PRKN_HUMAN Blast Output
Archaea
1|Sequence|1|10|MIVFVRFNSS

>sp|THIL_PYRHO|THIAMINE-MONOPHOSPHATE kinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 FVRFNSS 10
FVRFN S
Sbjct: 28 FVRFNDS 34


>sp|SYM_THEVO|METHIONINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 VFVRFN 8
VFVRFN
Sbjct: 33 VFVRFN 38


>sp|SYM_PICTO|METHIONINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 3 VFVRFN 8
+FVRFN
Sbjct: 32 IFVRFN 37




2|Sequence|6|15|RFNSSHGFPV

>sp|AMPPA_NATPD|AMP phosphorylase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 RFNSSHGFP 9
R +SHGFP
Sbjct: 59 RIGASHGFP 67


>sp|SPH2_HALSA|SMC-LIKE protein Sph2|Halobacterium salinarum (strain ATCC 700922

Query: 2 FNSSHG 7
FNSSHG
Sbjct: 547 FNSSHG 552


>sp|SPH2_HALS3|SMC-LIKE protein Sph2|Halobacterium salinarum (strain ATCC 29341

Query: 2 FNSSHG 7
FNSSHG
Sbjct: 547 FNSSHG 552


>sp|SYV_PYRHO|VALINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 RFNSSHGFPV 10
++ +SHG P+
Sbjct: 751 KYKNSHGLPL 760


>sp|SYV_PYRFU|VALINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 RFNSSHGFPV 10
++ +SHG P+
Sbjct: 751 KYKNSHGMPL 760


>sp|SYV_PYRAB|VALINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 RFNSSHGFPV 10
++ +SHG P+
Sbjct: 751 KYKNSHGMPL 760


>sp|BSUHB_ARCFU|FRUCTOSE-1,6-BISPHOSPHATASE/INOSITOL-1-MONOPHOSPHATASE fulgidus (strain ATCC 49558

Query: 2 FNSSHGFPV 10
FN++ G PV
Sbjct: 88 FNATRGIPV 96


>sp|HFLX_THEPD|GTPASE HflX|Thermofilum pendens (strain DSM 2475

Query: 6 HGFPV 10
HGFPV
Sbjct: 238 HGFPV 242


>sp|KPYK_AERPE|PYRUVATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 1 RFNSSHG 7
R N+SHG
Sbjct: 33 RINASHG 39




3|Sequence|11|20|HGFPVEVDSD

>sp|SYI_SULAC|ISOLEUCINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 HGFPVEVDSD 10
HG P+EV+++
Sbjct: 86 HGLPIEVETE 95


>sp|SYI_PICTO|ISOLEUCINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 1 HGFPVEVDSD 10
HG PVE++++
Sbjct: 93 HGLPVELEAE 102


>sp|SYI_SACS2|ISOLEUCINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 HGFPVEVDSD 10
HG P+EV ++
Sbjct: 26 HGLPIEVATE 35


>sp|SYI_SACI4|ISOLEUCINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 HGFPVEVDSD 10
HG P+EV ++
Sbjct: 89 HGLPIEVATE 98


>sp|SYI_SACI3|ISOLEUCINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 HGFPVEVDSD 10
HG P+EV ++
Sbjct: 89 HGLPIEVATE 98


>sp|Y1227_METJA|PUTATIVE glycyl-radical enzyme activating enzyme|Methanocaldococcus

Query: 2 GFPVEVDSD 10
GFPV++D++
Sbjct: 91 GFPVKIDTN 99


>sp|SYM_PYRAE|METHIONINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 HGFPVEVDS 9
HG PVEV++
Sbjct: 52 HGTPVEVEA 60


>sp|SYM_SULTO|METHIONINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 HGFPVEVDS 9
HG P+EV++
Sbjct: 53 HGTPIEVEA 61


>sp|SYI_THEAC|ISOLEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 HGFPVEVDSD 10
HG PVE++++
Sbjct: 92 HGLPVELEAE 101


>sp|SYI_THEVO|ISOLEUCINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 HGFPVEVDSD 10
HG PVE++++
Sbjct: 92 HGLPVELEAE 101


>sp|SYM_CALMQ|METHIONINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 HGFPVEVDS 9
HG P+EV++
Sbjct: 65 HGTPIEVEA 73


>sp|SYI_AERPE|ISOLEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 94 HGLPIEV 100


>sp|SYM_PYRNV|METHIONINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 HGFPVEVDS 9
HG P+EV++
Sbjct: 52 HGTPIEVEA 60


>sp|SYM_PYRAR|METHIONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 HGFPVEVDS 9
HG P+EV++
Sbjct: 52 HGTPIEVEA 60


>sp|Y048_ARCFU|UNCHARACTERIZED protein AF_0048|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 HGFPVEVDSD 10
HG P +DSD
Sbjct: 253 HGIPYALDSD 262


>sp|SYI_SULTO|ISOLEUCINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 86 HGLPIEV 92


>sp|SYM_PYRIL|METHIONINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 HGFPVEVDS 9
HG P+EV++
Sbjct: 52 HGTPIEVEA 60


>sp|SYM_PYRCJ|METHIONINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 HGFPVEVDS 9
HG P+EV++
Sbjct: 52 HGTPIEVEA 60


>sp|SYI_PYRAB|ISOLEUCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 89 HGLPIEV 95


>sp|SYI_METAC|ISOLEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 88 HGLPIEV 94


>sp|SYM_THEPD|METHIONINE--TRNA ligase|Thermofilum pendens (strain DSM 2475

Query: 1 HGFPVEVDS 9
HG P+EV++
Sbjct: 57 HGTPIEVEA 65


>sp|SYI_PYRHO|ISOLEUCINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 89 HGLPIEV 95


>sp|SYI_PYRFU|ISOLEUCINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 89 HGLPIEV 95


>sp|SYM_HYPBU|METHIONINE--TRNA ligase|Hyperthermus butylicus (strain DSM 5456

Query: 1 HGFPVEVDS 9
HG P+EV++
Sbjct: 52 HGTPIEVEA 60


>sp|SYI_THEKO|ISOLEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 89 HGLPIEV 95


>sp|SYI_METBF|ISOLEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 88 HGLPIEV 94


>sp|SYI_METJA|ISOLEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 86 HGLPIEV 92


>sp|SYM_SULAC|METHIONINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 HGFPVEVDS 9
HG P+E+++
Sbjct: 53 HGTPIEIEA 61


>sp|SYI_METMA|ISOLEUCINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 88 HGLPIEV 94


>sp|SYI_METB6|ISOLEUCINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 87 HGLPIEV 93


>sp|SYI_METTP|ISOLEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 88 HGLPIEV 94


>sp|SYM_IGNH4|METHIONINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 HGFPVEVDS 9
HG P+EV++
Sbjct: 52 HGTPIEVEA 60


>sp|SYI_METAR|ISOLEUCINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 88 HGLPIEV 94


>sp|RTCA_SACI7|RNA 3'-terminal phosphate cyclase|Saccharolobus islandicus (strain

Query: 2 GFPVEVDSD 10
G P+E+++D
Sbjct: 215 GVPIEIETD 223


>sp|RTCA_SACI2|RNA 3'-terminal phosphate cyclase|Saccharolobus islandicus (strain

Query: 2 GFPVEVDSD 10
G P+E+++D
Sbjct: 215 GVPIEIETD 223


>sp|RTCA_SACI1|RNA 3'-terminal phosphate cyclase|Saccharolobus islandicus (strain

Query: 2 GFPVEVDSD 10
G P+E+++D
Sbjct: 215 GVPIEIETD 223


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 87 HGLPIEV 93


>sp|ASSY_METBA|ARGININOSUCCINATE synthase|Methanosarcina barkeri

Query: 1 HGFPVEV 7
HG PVEV
Sbjct: 159 HGIPVEV 165


>sp|MER_METBF|5,10-METHYLENETETRAHYDROMETHANOPTERIN reductase|Methanosarcina barkeri (strain Fusaro /

Query: 1 HGFPVEVDS 9
HG PVE S
Sbjct: 244 HGIPVEAKS 252


>sp|SYM_METS5|METHIONINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 1 HGFPVEVDS 9
HG P+E+++
Sbjct: 53 HGTPIEIEA 61


>sp|SYI_METMP|ISOLEUCINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 86 HGLPIEV 92


>sp|SYI_META3|ISOLEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 87 HGLPIEV 93


>sp|SYI_ARCFU|ISOLEUCINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 83 HGLPIEV 89


>sp|SYI_METMJ|ISOLEUCINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 87 HGLPIEV 93


>sp|SYI_METBU|ISOLEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 88 HGLPIEV 94


>sp|ASSY_METBF|ARGININOSUCCINATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 HGFPVEV 7
HG PVEV
Sbjct: 159 HGIPVEV 165


>sp|ASSY_METAC|ARGININOSUCCINATE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 HGFPVEV 7
HG PVEV
Sbjct: 159 HGIPVEV 165


>sp|G3PP_PYRFU|GLYCERALDEHYDE 3-phosphate phosphatase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 HGFPVEVDS 9
HG PV+ D+
Sbjct: 36 HGMPVDFDT 44


>sp|SYI_METHJ|ISOLEUCINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 87 HGLPIEV 93


>sp|SYM_SACI4|METHIONINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 HGFPVEVDS 9
HG P+E+++
Sbjct: 53 HGTPIEIEA 61


>sp|SYM_SACS2|METHIONINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 HGFPVEVDS 9
HG P+E+++
Sbjct: 53 HGTPIEIEA 61


>sp|ASSY_SACS2|ARGININOSUCCINATE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GFPVEVDSD 10
G P++V+SD
Sbjct: 160 GIPIKVESD 168


>sp|CARA_PYRFU|CARBAMOYL phosphate synthase small chain|Pyrococcus furiosus (strain ATCC

Query: 1 HGFPVEVDSD 10
HG P+ +SD
Sbjct: 75 HGLPLHYESD 84


>sp|SYM_KORCO|METHIONINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 HGFPVEVDS 9
HG P+E+++
Sbjct: 50 HGTPIEIEA 58


>sp|Y187_THEON|UPF0292 protein TON_0187|Thermococcus onnurineus (strain NA1)

Query: 2 GFPVEVDSD 10
G+P VDS+
Sbjct: 87 GYPCRVDSE 95


>sp|TTRC_ARCFU|TETRATHIONATE reductase subunit C|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 FPVEVDSD 10
FP+EV+ D
Sbjct: 352 FPMEVEED 359


>sp|SIHH_METMA|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 HGFPVEVDS 9
HG P E+D+
Sbjct: 371 HGVPRELDT 379


>sp|SYI_METKA|ISOLEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 88 HGLPIEV 94


Query: 3 FPVEVDSD 10
FP+E DSD
Sbjct: 212 FPIEDDSD 219


>sp|ASSY_THEAC|ARGININOSUCCINATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 HGFPVEVD 8
HG PV++D
Sbjct: 158 HGIPVKLD 165


>sp|KPTA_THEKO|PROBABLE RNA 2'-phosphotransferase|Thermococcus kodakarensis (strain ATCC

Query: 1 HGFPVEVDSD 10
H FPV +D +
Sbjct: 79 HSFPVSLDHE 88


>sp|SYV_METTP|VALINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 84 HGLPTEV 90


>sp|NTPPA_THEKO|DTTP/UTP pyrophosphatase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 GFPVEV 7
GFP+E+
Sbjct: 169 GFPIEI 174


>sp|RTCA_SACI6|RNA 3'-terminal phosphate cyclase|Saccharolobus islandicus (strain

Query: 2 GFPVEVDSD 10
G P+E+ +D
Sbjct: 215 GVPIEIQTD 223


>sp|RTCA_SACI4|RNA 3'-terminal phosphate cyclase|Saccharolobus islandicus (strain

Query: 2 GFPVEVDSD 10
G P+E+ +D
Sbjct: 215 GVPIEIQTD 223


>sp|RTCA_SACI3|RNA 3'-terminal phosphate cyclase|Saccharolobus islandicus (strain

Query: 2 GFPVEVDSD 10
G P+E+ +D
Sbjct: 215 GVPIEIQTD 223


>sp|RPO6_HALLT|DNA-DIRECTED RNA polymerase subunit Rpo6|Halorubrum lacusprofundi (strain ATCC

Query: 1 HGFPVEVDSD 10
+G PV +D+D
Sbjct: 24 YGAPVLIDTD 33


>sp|SYV_METAC|VALINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 87 HGLPTEV 93


>sp|SYV_ARCFU|VALINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 83 HGLPTEV 89


>sp|HEM1_METTM|GLUTAMYL-TRNA reductase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 1 HGFPVEVDSD 10
+GF VE D D
Sbjct: 65 NGFTVEKDED 74


>sp|Y966_METJA|UNCHARACTERIZED protein MJ0966|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GFPVEVDSD 10
G P E D D
Sbjct: 314 GIPTETDED 322


>sp|SYV_METMA|VALINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 87 HGLPTEV 93


>sp|SYV_METBF|VALINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 87 HGLPTEV 93


>sp|NNR_ARCFU|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Archaeoglobus fulgidus (strain

Query: 1 HGFPVEVDSD 10
G P E+D+D
Sbjct: 101 EGLPEEIDAD 110


>sp|SYM_AERPE|METHIONINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 HGFPVEVDS 9
HG P+E+++
Sbjct: 52 HGTPIELEA 60


>sp|SYV_METMP|VALINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 83 HGLPTEV 89


>sp|SYA_ARCFU|ALANINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 HGFPVEV 7
HG PVE+
Sbjct: 452 HGIPVEL 458


>sp|SYV_METJA|VALINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 83 HGLPTEV 89


>sp|KPTA_THEON|PROBABLE RNA 2'-phosphotransferase|Thermococcus onnurineus (strain NA1)

Query: 1 HGFPVEVDSD 10
H FPV +D +
Sbjct: 79 HSFPVSLDHE 88


>sp|SYV_HALSA|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 85 HGLPTEV 91


>sp|SYV_HALS3|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 85 HGLPTEV 91


>sp|LMRAC_THEKO|LEUCINE/METHIONINE racemase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 HGFPVE 6
+GFPVE
Sbjct: 80 YGFPVE 85


>sp|SYI_HALWD|ISOLEUCINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 HGFPVEV 7
HG P+EV
Sbjct: 87 HGLPIEV 93


>sp|PELO_IGNH4|PROTEIN pelota homolog|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 GFPVEVDS 9
GF V+VDS
Sbjct: 213 GFKVKVDS 220


>sp|SYV_NATPD|VALINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 85 HGLPTEV 91


>sp|RPO6_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo6|Halobacterium salinarum (strain ATCC

Query: 1 HGFPVEVDSD 10
+G PV VD+D
Sbjct: 25 YGAPVLVDTD 34


>sp|RPO6_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo6|Halobacterium salinarum (strain ATCC

Query: 1 HGFPVEVDSD 10
+G PV VD+D
Sbjct: 25 YGAPVLVDTD 34


>sp|MFNA_METKA|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanopyrus kandleri (strain

Query: 1 HGFPVEVDS 9
HG P+ VD+
Sbjct: 172 HGVPLHVDA 180


>sp|ASSY_METKA|ARGININOSUCCINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 2 GFPVEVD 8
G PVEVD
Sbjct: 224 GVPVEVD 230


>sp|SYL_METBU|LEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 HGFPVE 6
HG PVE
Sbjct: 107 HGIPVE 112


>sp|SYY_PICTO|TYROSINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 GFPVEVDSD 10
G PV+VD D
Sbjct: 283 GGPVDVDMD 291


>sp|ASSY_METMA|ARGININOSUCCINATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 HGFPVE 6
HG PVE
Sbjct: 159 HGIPVE 164


>sp|SYV_METTH|VALINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 HGFPVEV 7
HG P EV
Sbjct: 86 HGLPTEV 92


>sp|Y699_METJA|UNCHARACTERIZED protein MJ0699|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GFPVEVDSD 10
G P++VD D
Sbjct: 147 GRPIKVDKD 155


>sp|DEGLY_PYRHO|DEGLYCASE PH1704|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 HGFPVEVD 8
HG+ V+VD
Sbjct: 44 HGYSVKVD 51


>sp|DEGLY_PYRFU|DEGLYCASE PfpI|Pyrococcus furiosus (strain ATCC 43587

Query: 1 HGFPVEVD 8
HG+ V+VD
Sbjct: 44 HGYSVKVD 51


>sp|Y1426_METTH|UPF0284 protein MTH_1426|Methanothermobacter thermautotrophicus (strain

Query: 1 HGFPVEV 7
HG PVE+
Sbjct: 339 HGIPVEM 345




4|Sequence|16|25|EVDSDTSIFQ

>sp|RELE3_METJA|TOXIN RelE3|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EVDSDTSIFQ 10
EV+ DT IF+
Sbjct: 66 EVNGDTIIFR 75


>sp|Y1506_METJA|UNCHARACTERIZED protein MJ1506|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EVDSDTSIFQ 10
E D DTSIF+
Sbjct: 352 EDDYDTSIFE 361


>sp|RL6_HALWD|LARGE ribosomal subunit protein uL6|Haloquadratum walsbyi (strain DSM

Query: 3 DSDTSIFQ 10
D DT IFQ
Sbjct: 161 DKDTRIFQ 168


>sp|RL6_HALSA|LARGE ribosomal subunit protein uL6|Halobacterium salinarum (strain ATCC

Query: 3 DSDTSIFQ 10
D DT +FQ
Sbjct: 157 DKDTRVFQ 164




5|Sequence|21|30|TSIFQLKEVV

>sp|Y1506_METJA|UNCHARACTERIZED protein MJ1506|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 TSIFQLKE 8
TSIF++KE
Sbjct: 357 TSIFEIKE 364




6|Sequence|26|35|LKEVVAKRQG

>sp|SYK_HALSA|LYSINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 LKEVVAKRQG 10
L+E +A+R+G
Sbjct: 413 LREEIARREG 422


>sp|RS24_THEVO|SMALL ribosomal subunit protein eS24|Thermoplasma volcanium (strain

Query: 1 LKEVVAKRQG 10
+KE++AK +G
Sbjct: 37 IKEIIAKHEG 46


>sp|PURQ_METMP|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Methanococcus maripaludis (strain DSM 14266

Query: 1 LKEVVAKRQG 10
LK+ +AKR G
Sbjct: 240 LKKEIAKRNG 249


>sp|PURQ_METM7|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Methanococcus maripaludis (strain C7 /

Query: 1 LKEVVAKRQG 10
LK+ +AKR G
Sbjct: 240 LKKEIAKRNG 249


>sp|SYFB_METVS|PHENYLALANINE--TRNA ligase beta subunit|Methanococcus vannielii (strain ATCC 35089

Query: 1 LKEVVAKRQG 10
LKE VAK G
Sbjct: 336 LKEEVAKNHG 345


>sp|Y859_METJA|UNCHARACTERIZED protein MJ0859|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LKEVVAKRQ 9
LKEV AKR+
Sbjct: 139 LKEVPAKRE 147




7|Sequence|31|40|AKRQGVPADQ

>sp|SYL_PYRAE|LEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 AKRQGVPADQ 10
AKR GVP +Q
Sbjct: 569 AKRTGVPPEQ 578


>sp|KAE1B_NATPD|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 AKRQGVP 7
A+RQGVP
Sbjct: 394 ARRQGVP 400


>sp|KAE1B_HALSA|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 AKRQGVP 7
A+RQGVP
Sbjct: 386 ARRQGVP 392


>sp|MCRA_METVA|METHYL-COENZYME M reductase subunit alpha|Methanococcus vannielii

Query: 2 KRQGVP 7
KRQGVP
Sbjct: 53 KRQGVP 58


>sp|SYR_KORCO|ARGININE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 2 KRQGVPAD 9
K QGVP D
Sbjct: 530 KAQGVPED 537


>sp|SYK_THEKO|LYSINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 AKRQGVPADQ 10
AK++G+P+ +
Sbjct: 479 AKKRGIPSKE 488


>sp|PTH_METKA|PEPTIDYL-TRNA hydrolase|Methanopyrus kandleri (strain AV19 /

Query: 1 AKRQGVPA 8
AKR+G+P+
Sbjct: 69 AKRRGLPS 76


>sp|MER_METTH|5,10-METHYLENETETRAHYDROMETHANOPTERIN reductase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 KRQGVPAD 9
+R G+PAD
Sbjct: 237 ERHGLPAD 244




8|Sequence|36|45|VPADQLRVIF

>sp|SYA_METMP|ALANINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 VPADQLRVI 9
VP D LR+I
Sbjct: 682 VPGDTLRII 690


>sp|SYA_METM7|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 VPADQLRVI 9
VP D LR+I
Sbjct: 682 VPGDTLRII 690


>sp|SYA_METM6|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 1 VPADQLRVI 9
VP D LR+I
Sbjct: 682 VPGDTLRII 690


>sp|SYA_METM5|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 1 VPADQLRVI 9
VP D LR+I
Sbjct: 682 VPGDTLRII 690


>sp|TOP1_PYRFU|DNA topoisomerase 1|Pyrococcus furiosus (strain ATCC 43587

Query: 1 VPADQLR 7
VPAD+LR
Sbjct: 395 VPADKLR 401


>sp|SYA_METVS|ALANINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 VPADQLRVI 9
VP D LR++
Sbjct: 682 VPGDTLRIV 690


>sp|SRP54_ACIAM|SIGNAL recognition particle 54 kDa|Acidianus ambivalens (Desulfurolobus

Query: 1 VPADQLRV 8
+P DQL+V
Sbjct: 363 IPEDQLKV 370


>sp|DNAG_PYRFU|DNA primase DnaG|Pyrococcus furiosus (strain ATCC 43587

Query: 1 VPADQLRVI 9
VPADQL I
Sbjct: 294 VPADQLLTI 302




9|Sequence|41|50|LRVIFAGKEL

>sp|AATC_METBF|A-TYPE ATP synthase subunit C|Methanosarcina barkeri (strain Fusaro /

Query: 1 LRVIFAGKE 9
LR+IF GKE
Sbjct: 337 LRIIFRGKE 345


>sp|AATC_METAC|A-TYPE ATP synthase subunit C|Methanosarcina acetivorans (strain ATCC

Query: 1 LRVIFAGKE 9
LR+IF GKE
Sbjct: 337 LRIIFRGKE 345


>sp|AATC_METMA|A-TYPE ATP synthase subunit C|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LRVIFAGKE 9
LR+IF GKE
Sbjct: 337 LRIIFRGKE 345


>sp|Y2298_ARCFU|UNCHARACTERIZED DNA primase small subunit-like|Archaeoglobus fulgidus (strain ATCC

Query: 1 LRVIFAGK 8
LRV+F+G+
Sbjct: 179 LRVVFSGR 186


>sp|ADEC_METTP|ADENINE deaminase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 RVIFAGKEL 10
RVIF G+E+
Sbjct: 335 RVIFEGEEV 343


>sp|CSG_METJA|S-LAYER protein|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LRVIFAGKEL 10
+R+ F GKE+
Sbjct: 234 MRIPFLGKEM 243


>sp|NAC_THEVO|NASCENT polypeptide-associated complex protein|Thermoplasma volcanium

Query: 2 RVIFAGKE 9
+VIF GKE
Sbjct: 30 KVIFVGKE 37


>sp|PURL_IGNH4|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 LRVIFAGKEL 10
LRV+ GKE+
Sbjct: 685 LRVLLNGKEV 694




10|Sequence|46|55|AGKELRNDWT

>sp|AROC_HALSA|CHORISMATE synthase|Halobacterium salinarum (strain ATCC 700922

Query: 1 AGKELRNDWT 10
AGK+ DWT
Sbjct: 260 AGKQRNEDWT 269


>sp|PYRI_CALMQ|ASPARTATE carbamoyltransferase regulatory chain|Caldivirga maquilingensis

Query: 2 GKELRND 8
GKEL ND
Sbjct: 67 GKELSND 73


>sp|IDI2_SULTO|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GKELRN 7
GKELRN
Sbjct: 344 GKELRN 349


>sp|CDRL_HALSA|TRANSCRIPTIONAL regulator CdrL|Halobacterium salinarum (strain ATCC 700922

Query: 2 GKELRNDW 9
G E+R DW
Sbjct: 146 GDEIRADW 153


>sp|CDRL_HALS3|TRANSCRIPTIONAL regulator CdrL|Halobacterium salinarum (strain ATCC 29341

Query: 2 GKELRNDW 9
G E+R DW
Sbjct: 146 GDEIRADW 153


>sp|PRIL_SACS2|DNA primase large subunit PriL|Saccharolobus solfataricus (strain ATCC

Query: 3 KELRNDW 9
K+L+ DW
Sbjct: 150 KDLKEDW 156


>sp|DAPF_METKA|DIAMINOPIMELATE epimerase|Methanopyrus kandleri (strain AV19 /

Query: 4 ELRNDW 9
ELR DW
Sbjct: 247 ELRGDW 252


>sp|CSG_METVS|S-LAYER protein|Methanococcus vannielii (strain ATCC 35089

Query: 2 GKELRNDW 9
G+E NDW
Sbjct: 369 GEEYINDW 376


>sp|SYK_METBA|LYSINE--TRNA ligase|Methanosarcina barkeri

Query: 1 AGKELRNDWT 10
+GK + +DW+
Sbjct: 158 SGKTVASDWS 167


>sp|SYM_METMJ|METHIONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 KELRNDW 9
KEL +DW
Sbjct: 222 KELLHDW 228




11|Sequence|51|60|RNDWTVQNCD

>sp|TKSP_THEKO|SUBTILISIN-LIKE serine protease|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 DWTVQNCD 10
DW VQN D
Sbjct: 253 DWAVQNKD 260


>sp|SYA_THEKO|ALANINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 DWTVQNC 9
DW VQ C
Sbjct: 713 DWDVQAC 719


>sp|SYA_PYRHO|ALANINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 DWTVQNC 9
DW VQ C
Sbjct: 711 DWDVQAC 717


>sp|SYA_PYRFU|ALANINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 DWTVQNC 9
DW VQ C
Sbjct: 711 DWDVQAC 717


>sp|SYA_PYRAB|ALANINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 3 DWTVQNC 9
DW VQ C
Sbjct: 711 DWDVQAC 717


>sp|FSX1_HALS0|FUSEXIN 1|Haloferax sp. (strain Q22)

Query: 3 DWTVQNC 9
DWT NC
Sbjct: 120 DWTTTNC 126


>sp|SYA_METS5|ALANINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 3 DWTVQNC 9
DW V++C
Sbjct: 698 DWDVESC 704


>sp|TRM1_HALMA|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloarcula marismortui

Query: 2 NDWTVQNCD 10
NDW CD
Sbjct: 71 NDWETTLCD 79


>sp|SYE_METTP|GLUTAMATE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 DWTVQNC 9
DW +++C
Sbjct: 155 DWYIEDC 161


>sp|AATA_METS5|A-TYPE ATP synthase subunit A|Metallosphaera sedula (strain ATCC 51363

Query: 2 NDWTVQNCD 10
+DW ++N D
Sbjct: 443 SDWWIKNVD 451


>sp|SYA_SACS2|ALANINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 DWTVQNC 9
DW +++C
Sbjct: 702 DWDIESC 708


>sp|SYA_SACI7|ALANINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 3 DWTVQNC 9
DW +++C
Sbjct: 702 DWDIESC 708


>sp|SYA_SACI6|ALANINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 3 DWTVQNC 9
DW +++C
Sbjct: 702 DWDIESC 708


>sp|SYA_SACI4|ALANINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 3 DWTVQNC 9
DW +++C
Sbjct: 702 DWDIESC 708


>sp|SYA_SACI3|ALANINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 3 DWTVQNC 9
DW +++C
Sbjct: 702 DWDIESC 708


>sp|SYA_SACI2|ALANINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 3 DWTVQNC 9
DW +++C
Sbjct: 702 DWDIESC 708


>sp|SYA_SACI1|ALANINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 3 DWTVQNC 9
DW +++C
Sbjct: 702 DWDIESC 708


>sp|RRP4_NITMS|EXOSOME complex component Rrp4|Nitrosopumilus maritimus (strain SCM1)

Query: 1 RNDWTVQNCD 10
+N W V +C+
Sbjct: 179 QNGWVVVSCE 188


>sp|SYE_METBU|GLUTAMATE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 3 DWTVQNCD 10
DW +++C+
Sbjct: 158 DWYLEDCE 165


>sp|SYA_SULTO|ALANINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 DWTVQNC 9
DW ++ C
Sbjct: 701 DWDIEGC 707


>sp|FSX1_NATA2|FUSEXIN 1|Natrinema altunense (strain JCM 12890

Query: 1 RNDWTVQNC 9
+ W QNC
Sbjct: 137 KQSWAEQNC 145


>sp|TREH1_SULAC|TREHALASE 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 DWTVQNC 9
+W ++NC
Sbjct: 412 EWVMRNC 418




12|Sequence|56|65|VQNCDLDQQS

>sp|IDI2_METMP|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Methanococcus maripaludis (strain DSM 14266

Query: 1 VQNCDLD 7
+ NCDLD
Sbjct: 40 ISNCDLD 46


>sp|TRPD_CENSY|ANTHRANILATE phosphoribosyltransferase|Cenarchaeum symbiosum (strain A)

Query: 4 CDLDQQ 9
CDLDQ+
Sbjct: 126 CDLDQR 131


>sp|PURQ_METJA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Methanocaldococcus jannaschii (strain ATCC

Query: 3 NCDLD 7
NCDLD
Sbjct: 12 NCDLD 16


>sp|COFC_METHJ|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 CDLDQQ 9
CD+D+Q
Sbjct: 172 CDIDEQ 177


>sp|GGGPS_HALMA|GERANYLGERANYLGLYCERYL phosphate synthase|Haloarcula marismortui (strain ATCC 43049

Query: 3 NCDLD 7
NCDLD
Sbjct: 136 NCDLD 140


>sp|IF2G_THEAC|TRANSLATION initiation factor 2 subunit|Thermoplasma acidophilum (strain ATCC

Query: 2 QNCDLDQ 8
+NCDL++
Sbjct: 76 ENCDLER 82


>sp|DNAG_METVS|DNA primase DnaG|Methanococcus vannielii (strain ATCC 35089

Query: 1 VQNCDLDQQS 10
+Q CD+D S
Sbjct: 230 LQTCDIDYVS 239


>sp|IDI2_META3|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 VQNCDLD 7
+ NCDL+
Sbjct: 39 ISNCDLE 45




13|Sequence|61|70|LDQQSIVHIV

***** No hits found ******


14|Sequence|66|75|IVHIVQRPWR

>sp|DOXA_ACIAM|THIOSULFATE dehydrogenase [quinone] small subunit|Acidianus ambivalens

Query: 2 VHIVQRPW 9
V ++Q PW
Sbjct: 100 VKVIQAPW 107




15|Sequence|71|80|QRPWRKGQEM

>sp|HIS3_METJA|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 QRPWRKGQE 9
++ WRKG+E
Sbjct: 62 KKLWRKGEE 70


>sp|HIS3_METM7|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus maripaludis (strain C7 /

Query: 4 WRKGQE 9
WRKG+E
Sbjct: 67 WRKGEE 72


>sp|HIS3_METM6|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus maripaludis (strain C6 /

Query: 4 WRKGQE 9
WRKG+E
Sbjct: 67 WRKGEE 72


>sp|HIS3_METM5|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus maripaludis (strain C5 /

Query: 4 WRKGQE 9
WRKG+E
Sbjct: 67 WRKGEE 72


>sp|HIS3_META3|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 WRKGQE 9
WRKG+E
Sbjct: 65 WRKGEE 70


>sp|HIS3_METMJ|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 QRPWRKGQE 9
Q+ W+KG+E
Sbjct: 50 QKLWKKGEE 58


>sp|DPM1_PYRFU|DOLICHOL-PHOSPHATE mannosyltransferase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 RPWRKGQEM 10
R W K QE+
Sbjct: 44 RTWEKAQEL 52


>sp|RNP1_THEON|RIBONUCLEASE P protein component 1|Thermococcus onnurineus (strain NA1)

Query: 2 RPWRKGQEM 10
RP RKGQE+
Sbjct: 15 RPQRKGQEV 23


>sp|SYM_THEON|METHIONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 1 QRPWRKGQE 9
Q+PW+ +E
Sbjct: 474 QKPWKTAKE 482


>sp|Y1089_METJA|UNCHARACTERIZED protein MJ1089|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 RPWRKGQEM 10
R W KG+++
Sbjct: 205 RAWEKGEKL 213


>sp|SYM_THEKO|METHIONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 QRPWRKGQE 9
Q+PW+ +E
Sbjct: 474 QKPWKTAKE 482


>sp|HIS3_METMP|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus maripaludis (strain DSM 14266

Query: 4 WRKGQE 9
W+KG+E
Sbjct: 67 WKKGEE 72


>sp|HIS3_METLZ|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 4 WRKGQE 9
W+KG+E
Sbjct: 58 WKKGEE 63


>sp|SYK_METMJ|LYSINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 RPWRK 6
RPWR+
Sbjct: 311 RPWRR 315


>sp|HIS3_METHJ|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 WRKGQE 9
W+KG+E
Sbjct: 64 WKKGEE 69


>sp|RFRNP_HALVD|RNA-FREE ribonuclease P|Haloferax volcanii (strain ATCC 29605

Query: 2 RPWRKGQE 9
RPW +G +
Sbjct: 218 RPWTRGDD 225


>sp|HIS3_METB6|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanoregula boonei (strain DSM 21154

Query: 1 QRPWRKGQE 9
++ W+KG+E
Sbjct: 52 KKIWKKGEE 60


>sp|HIS3_METKA|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanopyrus kandleri (strain AV19 /

Query: 4 WRKGQE 9
W+KG+E
Sbjct: 73 WKKGEE 78


>sp|RNP1_THEKO|RIBONUCLEASE P protein component 1|Thermococcus kodakarensis (strain ATCC

Query: 2 RPWRKGQEM 10
RP R+GQE+
Sbjct: 15 RPQRQGQEV 23


>sp|Y425_METJA|UNCHARACTERIZED protein MJ0425|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 WRKGQEM 10
W KG+E+
Sbjct: 60 WHKGEEI 66




16|Sequence|76|85|KGQEMNATGG

>sp|IF6_METLZ|TRANSLATION initiation factor 6|Methanocorpusculum labreanum (strain ATCC

Query: 2 GQEMNATG 9
G+EMNA G
Sbjct: 92 GEEMNAAG 99




17|Sequence|81|90|NATGGDDPRN

>sp|RPO10_HYPBU|DNA-DIRECTED RNA polymerase subunit Rpo10|Hyperthermus butylicus (strain DSM

Query: 4 GGDDPR 9
GG+DPR
Sbjct: 27 GGEDPR 32


>sp|CETZ_THEKO|TUBULIN-LIKE protein CetZ|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 ATGGDDP 8
ATG DDP
Sbjct: 363 ATGSDDP 369


>sp|Y1062_METJA|UNCHARACTERIZED protein MJ1062|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 ATGGDDPRN 10
A GG DP N
Sbjct: 175 AFGGSDPSN 183


>sp|Y206_METKA|UPF0280 protein MK0206|Methanopyrus kandleri (strain AV19 /

Query: 1 NATGGDDP 8
N T GDDP
Sbjct: 178 NLTSGDDP 185


>sp|RNP3_METKA|RIBONUCLEASE P protein component 3|Methanopyrus kandleri (strain AV19 /

Query: 2 ATGGDDPR 9
A GG DP+
Sbjct: 97 AVGGGDPK 104


>sp|PUS10_VULDI|TRNA pseudouridine synthase Pus10|Vulcanisaeta distributa (strain DSM

Query: 3 TGGDDP 8
TGG+DP
Sbjct: 237 TGGEDP 242


>sp|FTTA_METTH|TRANSCRIPTION termination factor FttA|Methanothermobacter thermautotrophicus

Query: 1 NATGGDD 7
N GGDD
Sbjct: 212 NVAGGDD 218


>sp|CETZ1_HALVD|TUBULIN-LIKE protein CetZ1|Haloferax volcanii (strain ATCC 29605

Query: 3 TGGDDP 8
TGGD+P
Sbjct: 253 TGGDEP 258




18|Sequence|86|95|DDPRNAAGGC

>sp|HPPA2_METAC|K(+)-INSENSITIVE pyrophosphate-energized proton pump|Methanosarcina acetivorans

Query: 1 DDPRNAA 7
DDPRNA
Sbjct: 197 DDPRNAG 203


>sp|COBS_PYRAE|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 DDPRNAAGG 9
+DPR GG
Sbjct: 90 EDPRRGTGG 98


>sp|COBS_PYRIL|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 DDPRNAAGG 9
+DPR GG
Sbjct: 90 EDPRRGVGG 98


>sp|GCK_PYRHO|GLYCERATE 2-kinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 DDPRNAAGG 9
D P +AAGG
Sbjct: 371 DGPTDAAGG 379


>sp|COBS_PYRCJ|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 DDPRNAAGG 9
+DPR GG
Sbjct: 90 EDPRRGTGG 98


>sp|DNLJ_HALWD|DNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 DPRNAAGG 9
+PRNAA G
Sbjct: 274 NPRNAAAG 281


>sp|ARGC_METBF|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanosarcina barkeri (strain Fusaro /

Query: 2 DPRNAAGG 9
DPRNA G
Sbjct: 119 DPRNAVYG 126


>sp|DNLJ_HALMA|DNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 3 PRNAAGGC 10
PRNAA G
Sbjct: 222 PRNAAAGT 229


>sp|ARGC_METMA|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 DPRNAAGG 9
DPRNA G
Sbjct: 122 DPRNAVYG 129


>sp|DNLJ_HALVD|DNA ligase|Haloferax volcanii (strain ATCC 29605

Query: 2 DPRNAAGGC 10
+PRNAA G
Sbjct: 221 NPRNAAAGT 229


>sp|DNLJ_HALLT|DNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 DPRNAAGGC 10
+PRNAA G
Sbjct: 231 NPRNAAAGT 239


>sp|DNLJ_NATPD|DNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 DPRNAAGG 9
+PRNAA G
Sbjct: 223 NPRNAAAG 230


>sp|AATE_META3|A-TYPE ATP synthase subunit E|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 PRNAAGGC 10
P N GGC
Sbjct: 161 PANIIGGC 168


>sp|TIAS_METKA|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Methanopyrus kandleri (strain

Query: 1 DDPRNAAGGC 10
DD + AGGC
Sbjct: 7 DDTDSPAGGC 16


>sp|TRM1_AERPE|TRNA (guanine(26)-N(2))-dimethyltransferase|Aeropyrum pernix (strain

Query: 1 DDPRNAAGG 9
+DP +A GG
Sbjct: 280 EDPASACGG 288




19|Sequence|91|100|AAGGCEREPQ

>sp|Y1804_AERPE|UNCHARACTERIZED protein APE_1804|Aeropyrum pernix (strain ATCC 700893

Query: 1 AAGGCEREPQ 10
A GG REP+
Sbjct: 18 APGGFPREPR 27


>sp|MTRD_METMP|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit D|Methanococcus maripaludis (strain DSM

Query: 1 AAGGCEREP 9
AA CE++P
Sbjct: 113 AADKCEKDP 121


>sp|KHSE_HALSA|HOMOSERINE kinase|Halobacterium salinarum (strain ATCC 700922

Query: 3 GGCEREPQ 10
G CE +PQ
Sbjct: 198 GMCENDPQ 205


>sp|KHSE_HALS3|HOMOSERINE kinase|Halobacterium salinarum (strain ATCC 29341

Query: 3 GGCEREPQ 10
G CE +PQ
Sbjct: 198 GMCENDPQ 205


>sp|Y1426_METTH|UPF0284 protein MTH_1426|Methanothermobacter thermautotrophicus (strain

Query: 3 GGCEREP 9
G C REP
Sbjct: 213 GDCSREP 219




20|Sequence|96|105|EREPQSLTRV

***** No hits found ******


21|Sequence|101|110|SLTRVDLSSS

***** No hits found ******


22|Sequence|106|115|DLSSSVLPGD

>sp|PYRH_PYRIL|URIDYLATE kinase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 LSSSVLPG 9
L SSVLPG
Sbjct: 164 LKSSVLPG 171


>sp|Y1624_METVS|UPF0145 protein Mevan_1624|Methanococcus vannielii (strain ATCC 35089

Query: 3 SSSVLPG 9
+SSVLPG
Sbjct: 84 TSSVLPG 90


>sp|PURL_HALMA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Haloarcula marismortui (strain ATCC 43049

Query: 2 LSSSVLPGD 10
+ +SVLPGD
Sbjct: 416 VRTSVLPGD 424


>sp|DCDA_ARCFU|DIAMINOPIMELATE decarboxylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 DLSSSVLP 8
DL+S++LP
Sbjct: 249 DLASAILP 256


>sp|METK_SACS2|S-ADENOSYLMETHIONINE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 DLSSSVLPG 9
DL+S + PG
Sbjct: 243 DLASKIAPG 251




23|Sequence|111|120|VLPGDSVGLA

>sp|Y2034_SULTO|UNCHARACTERIZED solute-binding protein STK_20340|Sulfurisphaera tokodaii (strain

Query: 1 VLPGDSVGLA 10
V+PG S GLA
Sbjct: 90 VVPGGSFGLA 99


>sp|EF1A_METPE|ELONGATION factor 1-alpha|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 LPGDSVGL 9
LPGD+VG
Sbjct: 282 LPGDNVGF 289


>sp|EF1A_METMJ|ELONGATION factor 1-alpha|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 LPGDSVGL 9
LPGD+VG
Sbjct: 282 LPGDNVGF 289


>sp|EF1A_METLZ|ELONGATION factor 1-alpha|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 LPGDSVGL 9
LPGD+VG
Sbjct: 282 LPGDNVGF 289


>sp|CSL4_ARCFU|EXOSOME complex component Csl4|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VLPGDSVGLA 10
V+PGD +G A
Sbjct: 4 VMPGDRIGSA 13


>sp|Y1441_METJA|UNCHARACTERIZED protein MJ1441|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LPGDSVGLA 10
LPG +VGL+
Sbjct: 537 LPGKNVGLS 545


>sp|RRP4_IGNAA|EXOSOME complex component Rrp4|Ignisphaera aggregans (strain DSM 17230

Query: 1 VLPGDSVGLA 10
V+PGDSV ++
Sbjct: 17 VVPGDSVQIS 26


>sp|EF1A_NANEQ|ELONGATION factor 1-alpha|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 LPGDSVGLA 10
LPGD++G +
Sbjct: 287 LPGDNIGFS 295


>sp|LEU3_METTH|3-ISOPROPYLMALATE dehydrogenase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 VLPGDSVGL 9
V+PGD +G+
Sbjct: 8 VIPGDGIGV 16


>sp|LEU3_SACS2|3-ISOPROPYLMALATE dehydrogenase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 VLPGDSVG 8
V+PGD +G
Sbjct: 7 VIPGDGIG 14


>sp|EF1A_PYRWO|ELONGATION factor 1-alpha|Pyrococcus woesei

Query: 2 LPGDSVGL 9
LPGD++G
Sbjct: 286 LPGDNIGF 293


>sp|LEU3_ARCFU|3-ISOPROPYLMALATE dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VLPGDSVG 8
V+PGD +G
Sbjct: 6 VIPGDGIG 13


>sp|EF1A_PYRFU|ELONGATION factor 1-alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LPGDSVGL 9
LPGD++G
Sbjct: 284 LPGDNIGF 291


>sp|MPTA_METMJ|GTP cyclohydrolase MptA|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 LPGDSV 7
LPGDSV
Sbjct: 272 LPGDSV 277


>sp|MPTA_METHJ|GTP cyclohydrolase MptA|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 LPGDSV 7
LPGDSV
Sbjct: 284 LPGDSV 289


>sp|EF1A_THECE|ELONGATION factor 1-alpha|Thermococcus celer

Query: 2 LPGDSVGL 9
LPGD++G
Sbjct: 284 LPGDNIGF 291


>sp|EF1A_PYRHO|ELONGATION factor 1-alpha|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 LPGDSVGL 9
LPGD++G
Sbjct: 284 LPGDNIGF 291


>sp|EF1A_METAR|ELONGATION factor 1-alpha|Methanocella arvoryzae (strain DSM 22066

Query: 2 LPGDSVGL 9
LPGD++G
Sbjct: 286 LPGDNIGF 293


>sp|EF1A_PYRAB|ELONGATION factor 1-alpha|Pyrococcus abyssi (strain GE5 /

Query: 2 LPGDSVGL 9
LPGD++G
Sbjct: 284 LPGDNIGF 291


>sp|EF1A_THEON|ELONGATION factor 1-alpha|Thermococcus onnurineus (strain NA1)

Query: 2 LPGDSVGL 9
LPGD++G
Sbjct: 284 LPGDNIGF 291


>sp|EF1A_THESM|ELONGATION factor 1-alpha|Thermococcus sibiricus (strain DSM 12597

Query: 2 LPGDSVGL 9
LPGD++G
Sbjct: 284 LPGDNIGF 291


>sp|CAS2_AERPE|CRISPR-ASSOCIATED endoribonuclease Cas2|Aeropyrum pernix (strain ATCC 700893

Query: 1 VLPGDSV 7
V+PGDSV
Sbjct: 67 VIPGDSV 73


>sp|PSB1_DESA1|PROTEASOME subunit beta 1|Desulfurococcus amylolyticus (strain DSM 18924

Query: 1 VLPGDSVGL 9
VLPG ++GL
Sbjct: 5 VLPGTAIGL 13


>sp|Y908_METJA|UNCHARACTERIZED protein MJ0908|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LPGDSVGLA 10
LPG VGL+
Sbjct: 556 LPGKCVGLS 564


>sp|EF1A_METBF|ELONGATION factor 1-alpha|Methanosarcina barkeri (strain Fusaro /

Query: 2 LPGDSVG 8
LPGD++G
Sbjct: 282 LPGDNIG 288


>sp|PSB2_THEPD|PROTEASOME subunit beta 2|Thermofilum pendens (strain DSM 2475

Query: 1 VLPGDSVGL 9
VLPG +VG+
Sbjct: 3 VLPGTTVGI 11


>sp|EF1A_METB6|ELONGATION factor 1-alpha|Methanoregula boonei (strain DSM 21154

Query: 2 LPGDSVGL 9
+PGD+VG
Sbjct: 282 VPGDNVGF 289


>sp|DPOL2_AERPE|DNA polymerase 2|Aeropyrum pernix (strain ATCC 700893

Query: 1 VLPGDSVGL 9
VLP SVGL
Sbjct: 52 VLPDGSVGL 60


>sp|LEU3_HALVD|3-ISOPROPYLMALATE dehydrogenase|Haloferax volcanii (strain ATCC 29605

Query: 1 VLPGDSVG 8
V+PGD +G
Sbjct: 7 VIPGDGIG 14


>sp|IDSA_METTH|SHORT chain isoprenyl diphosphate synthase|Methanothermobacter

Query: 3 PGDSVGLA 10
PGD+ G+A
Sbjct: 62 PGDAAGVA 69


>sp|TRM56_METMJ|TRNA (cytidine(56)-2'-O)-methyltransferase|Methanoculleus marisnigri

Query: 2 LPGDSVGLA 10
+PGD GLA
Sbjct: 113 VPGDIYGLA 121


>sp|AATA_NATPD|A-TYPE ATP synthase subunit A|Natronomonas pharaonis (strain ATCC 35678

Query: 1 VLPGDSVGL 9
V PGD VG+
Sbjct: 137 VSPGDVVGI 145


>sp|FLPA_METHJ|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanospirillum hungatei JF-1

Query: 1 VLPGDSV 7
VLPGD V
Sbjct: 14 VLPGDRV 20


>sp|TRM56_METAR|TRNA (cytidine(56)-2'-O)-methyltransferase|Methanocella arvoryzae

Query: 2 LPGDSVGLA 10
+PGD GLA
Sbjct: 116 VPGDIYGLA 124


>sp|RRP4_THEVO|EXOSOME complex component Rrp4|Thermoplasma volcanium (strain ATCC 51530

Query: 1 VLPGDSV 7
VLPGD V
Sbjct: 11 VLPGDPV 17


>sp|EF1A_METST|ELONGATION factor 1-alpha|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 PGDSVGL 9
PGD+VG
Sbjct: 273 PGDNVGF 279


>sp|GCH1L_METTH|GTP cyclohydrolase 1 type 2|Methanothermobacter thermautotrophicus

Query: 2 LPGDSVG 8
LPGD +G
Sbjct: 23 LPGDRIG 29


>sp|EF1A_META3|ELONGATION factor 1-alpha|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 PGDSVGL 9
PGD+VG
Sbjct: 287 PGDNVGF 293


>sp|PURL_HALMA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Haloarcula marismortui (strain ATCC 43049

Query: 1 VLPGDSVGL 9
VLPGD L
Sbjct: 420 VLPGDDAAL 428




24|Sequence|116|125|SVGLAVILHT

>sp|Y1051_METJA|UNCHARACTERIZED protein MJ1051|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SVGLAVILHT 10
S+G+ V+L+T
Sbjct: 465 SIGIPVVLNT 474


>sp|GGR_METS3|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 SVGLAVILH 9
+VGLA++ H
Sbjct: 220 NVGLAILQH 228


>sp|RLMN_NITMS|RIBOSOMAL RNA large subunit methyltransferase|Nitrosopumilus maritimus

Query: 2 VGLAVILH 9
+GLA+ LH
Sbjct: 219 IGLAISLH 226




25|Sequence|121|130|VILHTDSRKD

>sp|THIE_THEVO|THIAMINE-PHOSPHATE synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 LHTDSRKD 10
HTD++KD
Sbjct: 131 FHTDTKKD 138


>sp|APGM1_ARCFU|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VILHTDSRKD 10
VI+H D R+D
Sbjct: 360 VIVHEDVRRD 369


>sp|RS2_IGNH4|SMALL ribosomal subunit protein uS2|Ignicoccus hospitalis (strain KIN4/I

Query: 1 VILHTDSRKD 10
VIL TD+R D
Sbjct: 122 VILVTDTRMD 131


>sp|SYP_PYRNV|PROLINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 LHTDSRKD 10
LH D R+D
Sbjct: 327 LHVDDRRD 334


>sp|URED_HALMA|UREASE accessory protein UreD|Haloarcula marismortui (strain ATCC 43049

Query: 2 ILHTDSR 8
ILH DSR
Sbjct: 138 ILHADSR 144


>sp|THIE_THEAC|THIAMINE-PHOSPHATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 LHTDSRKD 10
HTD++KD
Sbjct: 133 FHTDTKKD 140




26|Sequence|126|135|DSRKDSPPAG

>sp|PNPH_ARCFU|PROBABLE 6-oxopurine nucleoside phosphorylase|Archaeoglobus fulgidus

Query: 3 RKDSPP 8
RKD PP
Sbjct: 52 RKDKPP 57


>sp|PRIS_HALWD|DNA primase small subunit PriS|Haloquadratum walsbyi (strain DSM

Query: 2 SRKDSPPAG 10
+R D+PPA
Sbjct: 20 ARMDTPPAA 28




27|Sequence|131|140|SPPAGSPAGR

>sp|PUR7_METMJ|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 SPPAGSPA 8
SPP G PA
Sbjct: 234 SPPWGEPA 241


>sp|Y427_METAR|UPF0173 metal-dependent hydrolase UNCMA_04270|Methanocella arvoryzae

Query: 4 AGSPAG 9
AGSPAG
Sbjct: 123 AGSPAG 128


>sp|CHEA_HALS3|CHEMOTAXIS protein CheA|Halobacterium salinarum (strain ATCC 29341

Query: 4 AGSPAG 9
AGSPAG
Sbjct: 140 AGSPAG 145


>sp|SERA_METTH|D-3-PHOSPHOGLYCERATE dehydrogenase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 PPAGSP 7
PP GSP
Sbjct: 262 PPEGSP 267


>sp|FTR_METJA|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 PPAGSPAGR 10
PP+ +P GR
Sbjct: 61 PPSKTPDGR 69


>sp|SYM_PYRNV|METHIONINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 PPAGSPA 8
PP G+PA
Sbjct: 405 PPPGTPA 411


>sp|RL10E_PYRIL|LARGE ribosomal subunit protein uL16|Pyrobaculum islandicum (strain DSM

Query: 5 GSPAGR 10
GSPAGR
Sbjct: 121 GSPAGR 126


>sp|RL10E_PYRAE|LARGE ribosomal subunit protein uL16|Pyrobaculum aerophilum (strain ATCC

Query: 5 GSPAGR 10
GSPAGR
Sbjct: 121 GSPAGR 126


>sp|RL10E_PYRCJ|LARGE ribosomal subunit protein uL16|Pyrobaculum calidifontis (strain DSM

Query: 5 GSPAGR 10
GSPAGR
Sbjct: 121 GSPAGR 126


>sp|Y1546_PYRCJ|UPF0282 protein Pcal_1546|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 PAGSPAGR 10
PAGS GR
Sbjct: 158 PAGSKTGR 165


>sp|RL10E_PYRNV|LARGE ribosomal subunit protein uL16|Pyrobaculum neutrophilum (strain DSM

Query: 5 GSPAGR 10
GSPAGR
Sbjct: 121 GSPAGR 126




28|Sequence|136|145|SPAGRSIYNS

>sp|PYRF_METBU|OROTIDINE 5'-phosphate decarboxylase|Methanococcoides burtonii (strain DSM

Query: 4 GRSIYNS 10
GRSIYNS
Sbjct: 193 GRSIYNS 199


>sp|PYRF_SACS2|OROTIDINE 5'-phosphate decarboxylase|Saccharolobus solfataricus (strain ATCC

Query: 4 GRSIYNS 10
GRSIYN+
Sbjct: 187 GRSIYNA 193


>sp|PYRF_METST|OROTIDINE 5'-phosphate decarboxylase|Methanosphaera stadtmanae (strain ATCC

Query: 4 GRSIYNS 10
GRSIYN+
Sbjct: 194 GRSIYNA 200


>sp|PYRF_PYRAB|OROTIDINE 5'-phosphate decarboxylase|Pyrococcus abyssi (strain GE5 /

Query: 4 GRSIYNS 10
GRSIYN+
Sbjct: 185 GRSIYNA 191


>sp|RS19E_AERPE|SMALL ribosomal subunit protein eS19|Aeropyrum pernix (strain ATCC 700893

Query: 1 SPAGRSIYNS 10
SPAGRS+ ++
Sbjct: 124 SPAGRSLLDT 133


>sp|PYRF_SULTO|OROTIDINE 5'-phosphate decarboxylase|Sulfurisphaera tokodaii (strain DSM

Query: 4 GRSIYNS 10
GRSIY S
Sbjct: 181 GRSIYES 187


>sp|HACA_METTH|PROBABLE methanogen homoaconitase large subunit|Methanothermobacter

Query: 1 SPAGRSIY 8
SPA R IY
Sbjct: 333 SPASREIY 340


>sp|PGP_NATPD|PHOSPHOGLYCOLATE phosphatase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 PAGRSIYN 9
PAG +YN
Sbjct: 71 PAGEVVYN 78


>sp|ILVC_ARCFU|KETOL-ACID reductoisomerase (NAD(P)(+))|Archaeoglobus fulgidus (strain ATCC

Query: 3 AGRSIYN 9
AGR +YN
Sbjct: 298 AGRPVYN 304


>sp|HISX_METTH|HISTIDINOL dehydrogenase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 PAGRSIYNS 10
P GR++Y S
Sbjct: 127 PGGRAVYPS 135


>sp|PYRF_PYRHO|OROTIDINE 5'-phosphate decarboxylase|Pyrococcus horikoshii (strain ATCC

Query: 4 GRSIYNS 10
GR+IYN+
Sbjct: 185 GRAIYNA 191


>sp|PYRF_PYRFU|OROTIDINE 5'-phosphate decarboxylase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 GRSIYNS 10
GR+IYN+
Sbjct: 185 GRAIYNA 191


>sp|PYRF_THEKO|OROTIDINE 5'-phosphate decarboxylase|Thermococcus kodakarensis (strain ATCC

Query: 4 GRSIYNS 10
GRSIY S
Sbjct: 189 GRSIYGS 195


>sp|GLPK1_SULAC|GLYCEROL kinase 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 SPAGRSIYNS 10
S +GR +YN+
Sbjct: 90 SRSGRPVYNA 99


>sp|PYRF_THEAC|OROTIDINE 5'-phosphate decarboxylase|Thermoplasma acidophilum (strain ATCC

Query: 4 GRSIYNS 10
GRSIY S
Sbjct: 187 GRSIYES 193




29|Sequence|141|150|SIYNSFYVYC

>sp|COFC_METTH|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanothermobacter thermautotrophicus (strain

Query: 1 SIYNSFYV 8
S+Y+SFY+
Sbjct: 168 SVYDSFYL 175


>sp|PYRG_SULAC|CTP synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 SIYNSFYVY 9
SIYNS ++Y
Sbjct: 448 SIYNSPHIY 456


>sp|SYR_HALLT|ARGININE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 YNSFYVYC 10
YN+FY C
Sbjct: 555 YNAFYREC 562


>sp|AROD_METHJ|3-DEHYDROQUINATE dehydratase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 IYNSFYVYC 10
++ S Y YC
Sbjct: 190 LFGSLYTYC 198


>sp|SYR_METHJ|ARGININE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 IYNSFY 7
I+NSFY
Sbjct: 508 IFNSFY 513


>sp|TRUD2_METMP|PROBABLE tRNA pseudouridine synthase D|Methanococcus maripaludis (strain DSM

Query: 4 NSFYVYC 10
++FY YC
Sbjct: 197 SAFYTYC 203


>sp|TRUD_METVS|PROBABLE tRNA pseudouridine synthase D|Methanococcus vannielii (strain ATCC

Query: 4 NSFYVYC 10
++FY YC
Sbjct: 197 SAFYTYC 203


>sp|TRUD_METM5|PROBABLE tRNA pseudouridine synthase D|Methanococcus maripaludis (strain C5

Query: 4 NSFYVYC 10
++FY YC
Sbjct: 197 SAFYTYC 203


>sp|SYR_THESM|ARGININE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 2 IYNSFYV 8
++NSFY+
Sbjct: 597 VFNSFYM 603


>sp|EF2_METTE|ELONGATION factor 2|Methanosarcina thermophila

Query: 3 YNSFYVY 9
+N FY+Y
Sbjct: 485 HNRFYIY 491


>sp|EF2_METBF|ELONGATION factor 2|Methanosarcina barkeri (strain Fusaro /

Query: 3 YNSFYVY 9
+N FY+Y
Sbjct: 485 HNRFYIY 491


>sp|EF2_METAC|ELONGATION factor 2|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 YNSFYVY 9
+N FY+Y
Sbjct: 485 HNRFYIY 491


>sp|COFC_METIM|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus infernus (strain DSM 11812

Query: 2 IYNSFYV 8
IY+SFY+
Sbjct: 162 IYDSFYL 168


>sp|MPTN_METJA|TETRAHYDROMETHANOPTERIN:ALPHA-L-GLUTAMATE ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 YNSFYV 8
YN+FY+
Sbjct: 169 YNTFYI 174


>sp|TRUD_META3|PROBABLE tRNA pseudouridine synthase D|Methanococcus aeolicus (strain ATCC

Query: 4 NSFYVYC 10
++FY YC
Sbjct: 206 SAFYTYC 212


>sp|Y133_METJA|UNCHARACTERIZED protein MJ0133|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 YNSFY 7
YNSFY
Sbjct: 187 YNSFY 191




30|Sequence|146|155|FYVYCKGPCQ

>sp|TRUD_META3|PROBABLE tRNA pseudouridine synthase D|Methanococcus aeolicus (strain ATCC

Query: 1 FYVYCKGP 8
FY YC P
Sbjct: 208 FYTYCGAP 215


>sp|TRUD_METVS|PROBABLE tRNA pseudouridine synthase D|Methanococcus vannielii (strain ATCC

Query: 1 FYVYCKGP 8
FY YC P
Sbjct: 199 FYTYCGTP 206


>sp|TRUD_METM5|PROBABLE tRNA pseudouridine synthase D|Methanococcus maripaludis (strain C5

Query: 1 FYVYCKGP 8
FY YC P
Sbjct: 199 FYTYCGTP 206


>sp|TRUD2_METMP|PROBABLE tRNA pseudouridine synthase D|Methanococcus maripaludis (strain DSM

Query: 1 FYVYCKGP 8
FY YC P
Sbjct: 199 FYTYCGTP 206


>sp|MTMB_METMA|MONOMETHYLAMINE methyltransferase MtmB|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 YVYCKGPC 9
Y C GPC
Sbjct: 334 YYPCAGPC 341


>sp|MTMB3_METBF|MONOMETHYLAMINE methyltransferase MtmB3|Methanosarcina barkeri (strain Fusaro /

Query: 2 YVYCKGPC 9
Y C GPC
Sbjct: 334 YYPCAGPC 341


>sp|MTMB2_METBF|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina barkeri (strain Fusaro /

Query: 2 YVYCKGPC 9
Y C GPC
Sbjct: 334 YYPCAGPC 341


>sp|MTMB1_METBF|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina barkeri (strain Fusaro /

Query: 2 YVYCKGPC 9
Y C GPC
Sbjct: 334 YYPCAGPC 341


>sp|MTMB1_METBA|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina barkeri

Query: 2 YVYCKGPC 9
Y C GPC
Sbjct: 334 YYPCAGPC 341


>sp|MTMB1_METAC|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina acetivorans (strain ATCC

Query: 2 YVYCKGPC 9
Y C GPC
Sbjct: 334 YYPCAGPC 341


>sp|MTMB2_METBA|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina barkeri

Query: 2 YVYCKGPC 9
Y C GPC
Sbjct: 334 YYPCAGPC 341


>sp|DAPAT_METMP|LL-DIAMINOPIMELATE aminotransferase|Methanococcus maripaludis (strain DSM 14266

Query: 1 FYVYCKGP 8
FY+Y K P
Sbjct: 334 FYLYVKAP 341


>sp|DAPAT_METJA|LL-DIAMINOPIMELATE aminotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FYVYCKGPCQ 10
FY+Y K P +
Sbjct: 334 FYLYVKSPTK 343


>sp|Y868_METJA|UNCHARACTERIZED protein MJ0868|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YVYCKGPCQ 10
++Y K PC+
Sbjct: 98 HLYVKSPCE 106


>sp|UVRC_METMA|UVRABC system protein C|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 CKGPC 9
C GPC
Sbjct: 168 CSGPC 172


>sp|UVRC_METBF|UVRABC system protein C|Methanosarcina barkeri (strain Fusaro /

Query: 5 CKGPC 9
C GPC
Sbjct: 162 CSGPC 166


>sp|UVRC_METAC|UVRABC system protein C|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 CKGPC 9
C GPC
Sbjct: 162 CSGPC 166


>sp|DP2L_METKA|DNA polymerase II large subunit|Methanopyrus kandleri (strain AV19 /

Query: 3 VYCKGPCQ 10
V C+G CQ
Sbjct: 281 VICEGICQ 288


>sp|APGM_AERPE|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Aeropyrum pernix (strain ATCC 700893

Query: 2 YVYCKGP 8
YV+ KGP
Sbjct: 313 YVHLKGP 319




31|Sequence|151|160|KGPCQRVQPG

>sp|CCA_PYRAE|CCA-ADDING enzyme|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 PCQRVQPG 10
PC ++QPG
Sbjct: 121 PCYKIQPG 128


>sp|SYFA_PYRAB|PHENYLALANINE--TRNA ligase alpha subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 KGPCQRVQPG 10
K P +R+ PG
Sbjct: 227 KAPVKRIYPG 236


>sp|SYFA_THEKO|PHENYLALANINE--TRNA ligase alpha subunit|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 KGPCQRVQPG 10
K P +R+ PG
Sbjct: 227 KAPVRRIYPG 236


>sp|SYFA_THEGJ|PHENYLALANINE--TRNA ligase alpha subunit|Thermococcus gammatolerans (strain DSM 15229

Query: 1 KGPCQRVQPG 10
K P +R+ PG
Sbjct: 226 KAPVRRIYPG 235


>sp|ILVD_METS5|DIHYDROXY-ACID dehydratase|Metallosphaera sedula (strain ATCC 51363

Query: 2 GPCQRVQPG 10
G C + QPG
Sbjct: 121 GGCDKTQPG 129


>sp|CCA_PYRNV|CCA-ADDING enzyme|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 PCQRVQPG 10
PC ++ PG
Sbjct: 119 PCYKIAPG 126


>sp|ILVD_AERPE|DIHYDROXY-ACID dehydratase|Aeropyrum pernix (strain ATCC 700893

Query: 2 GPCQRVQPG 10
G C + QPG
Sbjct: 120 GGCDKTQPG 128


>sp|RNZ_SULTO|RIBONUCLEASE Z|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GPCQRV 7
GPC++V
Sbjct: 202 GPCEKV 207


>sp|ILVD_PYRAE|DIHYDROXY-ACID dehydratase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 GPCQRVQPG 10
G C + QPG
Sbjct: 122 GGCDKTQPG 130


>sp|ILVD_PYRNV|DIHYDROXY-ACID dehydratase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 GPCQRVQPG 10
G C + QPG
Sbjct: 122 GGCDKTQPG 130


>sp|ILVD_PYRIL|DIHYDROXY-ACID dehydratase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 GPCQRVQPG 10
G C + QPG
Sbjct: 122 GGCDKTQPG 130


>sp|ILVD_PYRAR|DIHYDROXY-ACID dehydratase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 GPCQRVQPG 10
G C + QPG
Sbjct: 122 GGCDKTQPG 130


>sp|ACKA_METMZ|ACETATE kinase|Methanosarcina mazei (Methanosarcina frisia)

Query: 4 CQRVQPG 10
CQ + PG
Sbjct: 134 CQEIMPG 140


>sp|ACKA_METMA|ACETATE kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 CQRVQPG 10
CQ + PG
Sbjct: 134 CQEIMPG 140


>sp|ACKA_METAC|ACETATE kinase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 CQRVQPG 10
CQ + PG
Sbjct: 134 CQEIMPG 140


>sp|ILVD_PYRCJ|DIHYDROXY-ACID dehydratase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 GPCQRVQPG 10
G C + QPG
Sbjct: 122 GGCDKTQPG 130


>sp|CCA_AERPE|CCA-ADDING enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 3 PCQRVQPG 10
PC+R PG
Sbjct: 289 PCRRTLPG 296


>sp|RL2_METTP|LARGE ribosomal subunit protein uL2|Methanothrix thermoacetophila

Query: 2 GPCQRVQPG 10
GP +QPG
Sbjct: 83 GPAAEIQPG 91




32|Sequence|156|165|RVQPGKLRVQ

>sp|HELS_CALMQ|ATP-DEPENDENT DNA helicase Hel308|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 VQPGKLRV 9
VQPG LRV
Sbjct: 617 VQPGDLRV 624


>sp|Y1383_METJA|UNCHARACTERIZED protein MJ1383|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VQPGKL 7
+QPGKL
Sbjct: 183 IQPGKL 188


>sp|RL31_THEKO|LARGE ribosomal subunit protein eL31|Thermococcus kodakarensis (strain

Query: 4 PGKLRVQ 10
PGKLRV+
Sbjct: 67 PGKLRVK 73


>sp|AROA_METKA|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 4 PGKLRVQ 10
PGKLRV+
Sbjct: 232 PGKLRVE 238


>sp|EF1A_PYRFU|ELONGATION factor 1-alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 1 RVQPGKLRV 9
RV+ GKLRV
Sbjct: 241 RVETGKLRV 249


>sp|EF1A_PYRWO|ELONGATION factor 1-alpha|Pyrococcus woesei

Query: 1 RVQPGKLRV 9
RV+ GKLRV
Sbjct: 243 RVETGKLRV 251


>sp|TYW1_PYRHO|S-ADENOSYL-L-METHIONINE-DEPENDENT tRNA 4-demethylwyosine synthase|Pyrococcus horikoshii (strain

Query: 2 VQPGKLRVQ 10
++PGK+ VQ
Sbjct: 7 IKPGKITVQ 15


>sp|IF2P_IGNH4|PROBABLE translation initiation factor IF-2|Ignicoccus hospitalis (strain

Query: 2 VQPGKLRV 9
V+PGK+R+
Sbjct: 472 VRPGKIRI 479


>sp|TYW1_PYRAB|S-ADENOSYL-L-METHIONINE-DEPENDENT tRNA 4-demethylwyosine synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 VQPGKLRVQ 10
++PGK+ VQ
Sbjct: 7 IKPGKITVQ 15


>sp|IF2P_STAMF|PROBABLE translation initiation factor IF-2|Staphylothermus marinus (strain

Query: 2 VQPGKLRV 9
++PGK+R+
Sbjct: 472 IRPGKIRI 479




33|Sequence|161|170|KLRVQCSTCR

>sp|IF2B_SULAC|TRANSLATION initiation factor 2 subunit|Sulfolobus acidocaldarius (strain ATCC

Query: 1 KLRVQCSTCR 10
K+ VQCSTCR
Sbjct: 103 KMYVQCSTCR 112


>sp|IF2B_SULTO|TRANSLATION initiation factor 2 subunit|Sulfurisphaera tokodaii (strain DSM

Query: 1 KLRVQCSTCR 10
K VQCSTC+
Sbjct: 101 KTYVQCSTCK 110


>sp|IF2B_METS5|TRANSLATION initiation factor 2 subunit|Metallosphaera sedula (strain ATCC

Query: 1 KLRVQCSTCR 10
K VQCSTC+
Sbjct: 102 KTYVQCSTCK 111


>sp|HMED_ARCPA|HDR-LIKE menaquinol oxidoreductase iron-sulfur subunit|Archaeoglobus

Query: 4 VQCSTCR 10
+QCS CR
Sbjct: 162 LQCSLCR 168


>sp|SYA_METVS|ALANINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 3 RVQCSTCR 10
R QCS C+
Sbjct: 19 RKQCSECK 26


>sp|NPD_PYRFU|NAD-DEPENDENT protein deacylase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LRVQCSTC 9
RV+C++C
Sbjct: 120 FRVKCTSC 127


>sp|HMED_ARCFU|HDR-LIKE menaquinol oxidoreductase iron-sulfur subunit|Archaeoglobus

Query: 5 QCSTCR 10
QCS CR
Sbjct: 159 QCSLCR 164


>sp|NPD_PYRHO|NAD-DEPENDENT protein deacylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 LRVQCSTC 9
RV+C++C
Sbjct: 120 FRVRCTSC 127


>sp|DNAJ_METTE|CHAPERONE protein DnaJ|Methanosarcina thermophila

Query: 6 CSTCR 10
CSTCR
Sbjct: 186 CSTCR 190


>sp|DNAJ_HALMA|CHAPERONE protein DnaJ|Haloarcula marismortui (strain ATCC 43049

Query: 6 CSTCR 10
CSTCR
Sbjct: 215 CSTCR 219


>sp|SYA_PICTO|ALANINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 LRVQCSTC 9
+R QCS C
Sbjct: 14 VRKQCSVC 21


>sp|SYA_METBU|ALANINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 LRVQCSTC 9
+R QC TC
Sbjct: 17 VRKQCPTC 24


>sp|RS27_METJA|SMALL ribosomal subunit protein eS27|Methanocaldococcus jannaschii

Query: 2 LRVQCSTC 9
LRVQC C
Sbjct: 13 LRVQCPEC 20


>sp|PUR7_METMA|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 VQCSTCR 10
+ C TCR
Sbjct: 192 ISCDTCR 198


>sp|PUR7_METBU|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 4 VQCSTCR 10
+ C TCR
Sbjct: 192 ISCDTCR 198


>sp|PUR7_METBF|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 4 VQCSTCR 10
+ C TCR
Sbjct: 192 ISCDTCR 198


>sp|PUR7_METAC|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 VQCSTCR 10
+ C TCR
Sbjct: 192 ISCDTCR 198


>sp|ARSA_METJA|PUTATIVE arsenical pump-driving ATPase|Methanocaldococcus jannaschii (strain

Query: 4 VQCSTCR 10
VQC CR
Sbjct: 281 VQCDFCR 287


>sp|DNAJ_NATPD|CHAPERONE protein DnaJ|Natronomonas pharaonis (strain ATCC 35678

Query: 6 CSTCR 10
CSTCR
Sbjct: 211 CSTCR 215


>sp|CSL4_ARCFU|EXOSOME complex component Csl4|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 LRVQCSTCR 10
LR CS C+
Sbjct: 139 LRALCSNCK 147


>sp|IF2B_SACI7|TRANSLATION initiation factor 2 subunit|Saccharolobus islandicus (strain

Query: 1 KLRVQCSTCR 10
K V+CSTC+
Sbjct: 101 KAYVECSTCK 110


>sp|IF2B_SACI6|TRANSLATION initiation factor 2 subunit|Saccharolobus islandicus (strain M.16.4

Query: 1 KLRVQCSTCR 10
K V+CSTC+
Sbjct: 101 KAYVECSTCK 110


>sp|IF2B_SACI4|TRANSLATION initiation factor 2 subunit|Saccharolobus islandicus (strain

Query: 1 KLRVQCSTCR 10
K V+CSTC+
Sbjct: 101 KAYVECSTCK 110


>sp|IF2B_SACI3|TRANSLATION initiation factor 2 subunit|Saccharolobus islandicus (strain

Query: 1 KLRVQCSTCR 10
K V+CSTC+
Sbjct: 101 KAYVECSTCK 110


>sp|IF2B_SACI2|TRANSLATION initiation factor 2 subunit|Saccharolobus islandicus (strain

Query: 1 KLRVQCSTCR 10
K V+CSTC+
Sbjct: 101 KAYVECSTCK 110


>sp|IF2B_SACI1|TRANSLATION initiation factor 2 subunit|Saccharolobus islandicus (strain

Query: 1 KLRVQCSTCR 10
K V+CSTC+
Sbjct: 101 KAYVECSTCK 110


>sp|IF2B_SACS2|TRANSLATION initiation factor 2 subunit|Saccharolobus solfataricus (strain ATCC

Query: 1 KLRVQCSTCR 10
K V+CSTC+
Sbjct: 101 KAYVECSTCK 110


>sp|RPO3_METST|DNA-DIRECTED RNA polymerase subunit Rpo3|Methanosphaera stadtmanae (strain ATCC

Query: 6 CSTCR 10
CSTCR
Sbjct: 206 CSTCR 210




34|Sequence|166|175|CSTCRQATLT

>sp|HMED_ARCPA|HDR-LIKE menaquinol oxidoreductase iron-sulfur subunit|Archaeoglobus

Query: 1 CSTCRQATL 9
CS CR+ +L
Sbjct: 164 CSLCRRCSL 172


>sp|HMED_ARCFU|HDR-LIKE menaquinol oxidoreductase iron-sulfur subunit|Archaeoglobus

Query: 1 CSTCRQATL 9
CS CR+ +L
Sbjct: 160 CSLCRRCSL 168


>sp|DNAJ_HALMA|CHAPERONE protein DnaJ|Haloarcula marismortui (strain ATCC 43049

Query: 1 CSTCR 5
CSTCR
Sbjct: 215 CSTCR 219


>sp|DNAJ_METTE|CHAPERONE protein DnaJ|Methanosarcina thermophila

Query: 1 CSTCR 5
CSTCR
Sbjct: 186 CSTCR 190


>sp|DNAJ_NATPD|CHAPERONE protein DnaJ|Natronomonas pharaonis (strain ATCC 35678

Query: 1 CSTCR 5
CSTCR
Sbjct: 211 CSTCR 215


>sp|Y636_PYRAB|UPF0179 protein PYRAB06360|Pyrococcus abyssi (strain GE5 /

Query: 1 CSTCRQA 7
C TCR A
Sbjct: 26 CKTCRLA 32


>sp|Y1477_PYRHO|UPF0179 protein PH1477|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 CSTCRQA 7
C TCR A
Sbjct: 26 CKTCRLA 32


>sp|RPO3_METST|DNA-DIRECTED RNA polymerase subunit Rpo3|Methanosphaera stadtmanae (strain ATCC

Query: 1 CSTCR 5
CSTCR
Sbjct: 206 CSTCR 210




35|Sequence|171|180|QATLTLTQGP

>sp|Y136_METHJ|UPF0280 protein Mhun_0136|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 LTLTQGP 10
LT+TQGP
Sbjct: 55 LTITQGP 61




36|Sequence|176|185|LTQGPSCWDD

>sp|Y2167_ARCFU|UNCHARACTERIZED protein AF_2167|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 PSCWDD 10
P CWDD
Sbjct: 127 PKCWDD 132


>sp|AMPD_METTH|ANHYDROMEVALONATE phosphate decarboxylase|Methanothermobacter thermautotrophicus

Query: 1 LTQGPSCW 8
LT+G CW
Sbjct: 310 LTEGGCCW 317


>sp|AMPD_METSM|ANHYDROMEVALONATE phosphate decarboxylase|Methanobrevibacter smithii

Query: 1 LTQGPSCW 8
LT+G CW
Sbjct: 305 LTEGGCCW 312


>sp|AMPD_METJA|ANHYDROMEVALONATE phosphate decarboxylase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 LTQGPSCW 8
LT+G CW
Sbjct: 305 LTEGGCCW 312


>sp|LON_METST|LON protease|Methanosphaera stadtmanae (strain ATCC 43021

Query: 5 PSCWDD 10
P+C+DD
Sbjct: 29 PTCFDD 34


>sp|GSA_METTP|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 QGPSCWDD 10
+GP WD+
Sbjct: 49 EGPYLWDE 56


>sp|HMEE_ARCFU|HDR-LIKE menaquinol oxidoreductase cytochrome c|Archaeoglobus fulgidus

Query: 5 PSCWD 9
P CWD
Sbjct: 115 PECWD 119




37|Sequence|181|190|SCWDDVLIPN

>sp|Y812_ARCFU|UNCHARACTERIZED protein AF_0812|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SCWDDVLIPN 10
+ WD V+IP+
Sbjct: 227 TTWDKVVIPD 236


>sp|AAT_METJA|PROBABLE aspartate aminotransferase|Methanocaldococcus jannaschii (strain

Query: 4 DDVLIPN 10
D+VLIPN
Sbjct: 108 DEVLIPN 114


>sp|METXA_METBU|HOMOSERINE O-acetyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 3 WDDVLIP 9
WDD++ P
Sbjct: 75 WDDIIGP 81


>sp|RS7_METTH|SMALL ribosomal subunit protein uS7|Methanothermobacter

Query: 2 CWDDVLIPN 10
C D +L+P+
Sbjct: 25 CLDSILVPH 33


>sp|SYE_KORCO|GLUTAMATE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 3 WDDVLIP 9
WDD IP
Sbjct: 356 WDDPRIP 362


>sp|Y1295_METJA|UNCHARACTERIZED protein MJ1295|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 WDDVLI 8
WDD+++
Sbjct: 62 WDDIIV 67


>sp|RS7_METST|SMALL ribosomal subunit protein uS7|Methanosphaera stadtmanae (strain

Query: 2 CWDDVLIPN 10
C D++++P+
Sbjct: 26 CLDEIVVPH 34


>sp|SYV_HALSA|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 3 WDDVLI 8
WDDVL+
Sbjct: 512 WDDVLV 517


>sp|SYV_HALS3|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 3 WDDVLI 8
WDDVL+
Sbjct: 512 WDDVLV 517


>sp|Y2167_ARCFU|UNCHARACTERIZED protein AF_2167|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SCWDDV 6
CWDD+
Sbjct: 128 KCWDDI 133




38|Sequence|186|195|VLIPNRMSGE

>sp|IF1A_PICTO|TRANSLATION initiation factor 1A|Picrophilus torridus (strain ATCC 700027

Query: 1 VLIPNRMSGE 10
V+ PN+ SGE
Sbjct: 12 VITPNKKSGE 21


>sp|IF1A_THEVO|TRANSLATION initiation factor 1A|Thermoplasma volcanium (strain ATCC 51530

Query: 1 VLIPNRMSGE 10
V++PN+ GE
Sbjct: 30 VILPNKKKGE 39


>sp|IF1A_THEAC|TRANSLATION initiation factor 1A|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 VLIPNRMSGE 10
V++PN+ GE
Sbjct: 26 VILPNKKKGE 35


>sp|AATA_METST|A-TYPE ATP synthase subunit A|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 VLIPNRMSG 9
++IP +MSG
Sbjct: 148 IMIPPKMSG 156


>sp|DAPA_METMA|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 LIPNRMSG 9
++P++MSG
Sbjct: 208 IVPDKMSG 215


>sp|DPHB_AERPE|DIPHTHINE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 1 VLIPNRMSG 9
++IP R+SG
Sbjct: 247 IVIPARLSG 255


>sp|AATA_META3|A-TYPE ATP synthase subunit A|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 VLIPNRMSG 9
++IPN +SG
Sbjct: 149 IMIPNGISG 157


>sp|DP2L_METMJ|DNA polymerase II large subunit|Methanoculleus marisnigri (strain ATCC

Query: 1 VLIPNRMSGE 10
+LIP+ +SG+
Sbjct: 504 LLIPHHLSGD 513


>sp|DAPA_METAC|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 LIPNRMSG 9
++P++MSG
Sbjct: 208 IVPDKMSG 215




39|Sequence|191|200|RMSGECQSPH

>sp|AROB_THEKO|3-DEHYDROQUINATE synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 SGECQSP 9
SG+CQ P
Sbjct: 331 SGDCQKP 337


>sp|FRHA_METTH|COENZYME F420 hydrogenase subunit alpha|Methanothermobacter

Query: 1 RMSGECQSPH 10
R+ G C PH
Sbjct: 61 RICGVCPIPH 70




40|Sequence|196|205|CQSPHCPGTS

>sp|RS17_THEAC|SMALL ribosomal subunit protein uS17|Thermoplasma acidophilum (strain

Query: 1 CQSPHCP 7
C PHCP
Sbjct: 17 CNDPHCP 23


>sp|TIAS_IGNAA|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Ignisphaera aggregans (strain

Query: 1 CQSPHCP 7
C++P CP
Sbjct: 372 CKAPRCP 378


>sp|RS17_THEVO|SMALL ribosomal subunit protein uS17|Thermoplasma volcanium (strain

Query: 1 CQSPHCP 7
C PHCP
Sbjct: 17 CTDPHCP 23


>sp|LIPA_PYRCJ|LIPOYL synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 CQSPHCP 7
C+ HCP
Sbjct: 33 CEEAHCP 39


>sp|LIPA_PICTO|LIPOYL synthase|Picrophilus torridus (strain ATCC 700027

Query: 1 CQSPHCP 7
C+ HCP
Sbjct: 34 CEEAHCP 40


>sp|SYC_PYRAR|CYSTEINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 QSPHCPG 8
+SP CPG
Sbjct: 199 ESPWCPG 205


>sp|FDHA2_METMP|F420-DEPENDENT formate dehydrogenase 2 subunit|Methanococcus maripaludis (strain

Query: 1 CQSPHCPGT 9
C++P PGT
Sbjct: 521 CKTPEDPGT 529


>sp|SYT_THEVO|THREONINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 CQSPHCPGT 9
C PH P T
Sbjct: 165 CLGPHVPST 173


>sp|SYT_THEAC|THREONINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 CQSPHCPGT 9
C PH P T
Sbjct: 165 CLGPHVPST 173


>sp|SYT_HALMA|THREONINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 CQSPHCPGT 9
CQ PH T
Sbjct: 181 CQGPHVEST 189


>sp|SYI_METKA|ISOLEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 4 PHCP 7
PHCP
Sbjct: 361 PHCP 364


>sp|SYT_NATPD|THREONINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 CQSPHCPGT 9
CQ PH T
Sbjct: 181 CQGPHVDST 189


>sp|SYT_HALWD|THREONINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 CQSPHCPGT 9
CQ PH T
Sbjct: 181 CQGPHVDST 189


>sp|SYC_PYRNV|CYSTEINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 SPHCPG 8
SP CPG
Sbjct: 200 SPWCPG 205


>sp|SYC_PYRIL|CYSTEINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 3 SPHCPG 8
SP CPG
Sbjct: 200 SPWCPG 205


>sp|SYC_PYRCJ|CYSTEINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 SPHCPG 8
SP CPG
Sbjct: 200 SPWCPG 205


>sp|SYC_PYRAE|CYSTEINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 SPHCPG 8
SP CPG
Sbjct: 202 SPWCPG 207


>sp|RS17_METMP|SMALL ribosomal subunit protein uS17|Methanococcus maripaludis (strain

Query: 1 CQSPHCP 7
C+ P+CP
Sbjct: 15 CEDPNCP 21


>sp|Y1448_METMA|UPF0251 protein MM_1448|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 QSPHCPGTS 10
++PH PG S
Sbjct: 140 ETPHTPGVS 148


>sp|KCY_METLZ|CYTIDYLATE kinase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 CQSPHCPGT 9
C SP C T
Sbjct: 98 CASPECRST 106


>sp|PYRI_METTP|ASPARTATE carbamoyltransferase regulatory chain|Methanothrix thermoacetophila

Query: 1 CQSPHC 6
CQ+P C
Sbjct: 109 CQNPSC 114


>sp|SUCD2_ARCFU|SUCCINATE--COA ligase [ADP-forming] subunit alpha|Archaeoglobus fulgidus (strain

Query: 4 PHCPG 8
P+CPG
Sbjct: 122 PNCPG 126


>sp|SUCD1_ARCFU|SUCCINATE--COA ligase [ADP-forming] subunit alpha|Archaeoglobus fulgidus (strain

Query: 4 PHCPG 8
P+CPG
Sbjct: 125 PNCPG 129


>sp|Y157_METAC|UPF0251 protein MA_0157|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 QSPHCPGTS 10
++PH PG S
Sbjct: 140 ETPHTPGVS 148


>sp|THIO_METJA|THIOREDOXIN jannaschii (strain ATCC 43067

Query: 4 PHCPG 8
PHCP
Sbjct: 15 PHCPA 19


>sp|MVK_METTH|MEVALONATE kinase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 5 HCPG 8
HCPG
Sbjct: 274 HCPG 277


>sp|BGAL_HALLT|BETA-GALACTOSIDASE Bga|Halorubrum lacusprofundi (strain ATCC 49239

Query: 4 PHCP 7
PHCP
Sbjct: 322 PHCP 325


>sp|CYAS_METMJ|CYSTEATE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 5 HCPG 8
HCPG
Sbjct: 8 HCPG 11




41|Sequence|201|210|CPGTSAEFFF

>sp|RF1_THEVO|PEPTIDE chain release factor subunit|Thermoplasma volcanium (strain ATCC

Query: 2 PGTSAEFFF 10
PG + E+FF
Sbjct: 226 PGATKEYFF 234


>sp|RF1_THEAC|PEPTIDE chain release factor subunit|Thermoplasma acidophilum (strain ATCC

Query: 2 PGTSAEFFF 10
PG + E+FF
Sbjct: 226 PGATKEYFF 234


>sp|COFH_METKA|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanopyrus kandleri (strain AV19 /

Query: 2 PGTSAEFF 9
PGT+AE F
Sbjct: 177 PGTAAEIF 184


>sp|Y800_METJA|UNCHARACTERIZED protein MJ0800|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CPGTSAEFF 9
C G S FF
Sbjct: 276 CAGASGRFF 284




42|Sequence|206|215|AEFFFKCGAH

>sp|SYK_THEVO|LYSINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 AEFFFKCGAH 10
AE+ KCG H
Sbjct: 184 AEYTCKCGHH 193


>sp|SYK_THEAC|LYSINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 AEFFFKCGAH 10
AE+ KCG H
Sbjct: 187 AEYACKCGHH 196


>sp|TOP6B_SULTO|TYPE 2 DNA topoisomerase 6|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 AEFFFK 6
AEFFFK
Sbjct: 200 AEFFFK 205


>sp|METXA_HALLT|HOMOSERINE O-acetyltransferase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 AEFFFKCG 8
EF F+CG
Sbjct: 14 GEFVFECG 21


>sp|COFH2_METAC|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase 2|Methanosarcina acetivorans (strain

Query: 1 AEFFFKCGAH 10
A+F +CGA+
Sbjct: 303 AQFALQCGAN 312


>sp|FLPA_PYRAE|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Pyrobaculum aerophilum (strain

Query: 1 AEFFFKCGAH 10
A++F K G H
Sbjct: 171 ADYFLKPGGH 180


>sp|PYRG_METTP|CTP synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 FFFKCGAH 10
FFF C H
Sbjct: 500 FFFACQFH 507


>sp|METXA_NATPD|HOMOSERINE O-acetyltransferase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 AEFFFKCG 8
EF F+CG
Sbjct: 10 GEFTFECG 17


>sp|SPEH_SULTO|S-ADENOSYLMETHIONINE decarboxylase proenzyme|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 FKCGAH 10
+ CGAH
Sbjct: 87 YSCGAH 92


>sp|DPOL_METJA|DNA polymerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EFFFKCG 8
++ FKCG
Sbjct: 1229 KYIFKCG 1235


>sp|FRHG_METVO|COENZYME F420 hydrogenase subunit gamma|Methanococcus voltae

Query: 1 AEFFFKCG 8
+EF KCG
Sbjct: 217 SEFCIKCG 224




43|Sequence|211|220|KCGAHPTSDK

>sp|TRM1_PYRFU|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrococcus furiosus (strain

Query: 2 CGAHPTS 8
CGAHP +
Sbjct: 173 CGAHPKA 179


>sp|TRM1_PYRAB|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrococcus abyssi (strain

Query: 2 CGAHPTS 8
CGAHP +
Sbjct: 171 CGAHPKA 177


>sp|TRM1_PYRHO|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrococcus horikoshii

Query: 2 CGAHP 6
CGAHP
Sbjct: 174 CGAHP 178


>sp|DP2L_METBF|DNA polymerase II large subunit|Methanosarcina barkeri (strain Fusaro /

Query: 1 KCGAHPTS 8
KCG PTS
Sbjct: 688 KCGRKPTS 695


>sp|DP2L_METMA|DNA polymerase II large subunit|Methanosarcina mazei (strain ATCC

Query: 1 KCGAHPTS 8
KCG PTS
Sbjct: 694 KCGRKPTS 701


>sp|DP2L_METAC|DNA polymerase II large subunit|Methanosarcina acetivorans (strain ATCC

Query: 1 KCGAHPTS 8
KCG PTS
Sbjct: 687 KCGRKPTS 694


>sp|SYT_METAR|THREONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 KCGAHPTSD 9
KC HP S+
Sbjct: 125 KCKGHPLSE 133


>sp|Y3181_METBF|UPF0210 protein Mbar_A3181|Methanosarcina barkeri (strain Fusaro /

Query: 1 KCGAHPTS 8
+CGAH T+
Sbjct: 298 RCGAHGTT 305


>sp|LIPB_PYRCJ|PROBABLE octanoyltransferase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 CGAHPTS 8
CG HP++
Sbjct: 160 CGLHPSA 166


>sp|Y081_METMA|UPF0210 protein MM_0081|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 KCGAHPTS 8
+CGAH T+
Sbjct: 298 RCGAHGTT 305


>sp|SYM_HALWD|METHIONINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 CGAHPTSDK 10
CGAH D+
Sbjct: 170 CGAHARGDE 178


>sp|Y1487_METJA|UNCHARACTERIZED methyltransferase MJ1487|Methanocaldococcus jannaschii (strain ATCC

Query: 3 GAHPTSD 9
G HPT D
Sbjct: 96 GPHPTGD 102


>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1 (strain

Query: 1 KCGAHPTS 8
+CG PTS
Sbjct: 668 QCGMEPTS 675


>sp|SYT_PYRIL|THREONINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 KCGAHPTSD 9
KC HP S+
Sbjct: 122 KCFGHPLSE 130


>sp|Y2170_ARCFU|KELCH domain-containing protein AF_2170|Archaeoglobus fulgidus (strain

Query: 5 HPTSD 9
HPTSD
Sbjct: 130 HPTSD 134


>sp|MCRX_METTM|METHYL-COENZYME M reductase II subunit|Methanothermobacter marburgensis (strain

Query: 2 CGAHPTSD 9
CG PT D
Sbjct: 363 CGTKPTMD 370


>sp|MCRX_METTH|METHYL-COENZYME M reductase II subunit|Methanothermobacter thermautotrophicus

Query: 2 CGAHPTSD 9
CG PT D
Sbjct: 363 CGTKPTMD 370


>sp|Y2119_ARCFU|UNCHARACTERIZED protein AF_2119|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 HPTSD 9
HPTSD
Sbjct: 169 HPTSD 173




44|Sequence|216|225|PTSDKETSVA

>sp|DP2L_NANEQ|DNA polymerase II large subunit|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 PTSDKE 6
PTSDKE
Sbjct: 222 PTSDKE 227




45|Sequence|221|230|ETSVALHLIA

***** No hits found ******


46|Sequence|226|235|LHLIATNSRN

>sp|PYLS_METBF|PYRROLYSINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 HLIATNSRN 10
HL+ NSR+
Sbjct: 45 HLVVNNSRS 53


>sp|PYLS_METMA|PYRROLYSINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 HLIATNSRN 10
HL+ NSR+
Sbjct: 45 HLVVNNSRS 53


>sp|PYLS_METBA|PYRROLYSINE--TRNA ligase|Methanosarcina barkeri

Query: 2 HLIATNSRN 10
HL+ NSR+
Sbjct: 45 HLVVNNSRS 53




47|Sequence|231|240|TNSRNITCIT

>sp|TRM1_HALSA|TRNA (guanine(26)-N(2))-dimethyltransferase|Halobacterium salinarum

Query: 2 NSRNITCIT 10
N+RN+ C+T
Sbjct: 140 NARNLVCVT 148


>sp|TRM1_HALS3|TRNA (guanine(26)-N(2))-dimethyltransferase|Halobacterium salinarum

Query: 2 NSRNITCIT 10
N+RN+ C+T
Sbjct: 140 NARNLVCVT 148


>sp|TRM1_HALLT|TRNA (guanine(26)-N(2))-dimethyltransferase|Halorubrum lacusprofundi

Query: 2 NSRNITCIT 10
N+RN+ C+T
Sbjct: 139 NARNLVCVT 147


>sp|SYP_SACI7|PROLINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 NSRNITCIT 10
N NITC+T
Sbjct: 319 NKNNITCVT 327


>sp|SYP_SACI6|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 NSRNITCIT 10
N NITC+T
Sbjct: 319 NKNNITCVT 327


>sp|SYP_SACI4|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 NSRNITCIT 10
N NITC+T
Sbjct: 319 NKNNITCVT 327


>sp|SYP_SACI3|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 2 NSRNITCIT 10
N NITC+T
Sbjct: 319 NKNNITCVT 327


>sp|SYP_SACI2|PROLINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 NSRNITCIT 10
N NITC+T
Sbjct: 319 NKNNITCVT 327


>sp|SYP_SACI1|PROLINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 NSRNITCIT 10
N NITC+T
Sbjct: 319 NKNNITCVT 327


>sp|SYP_SACS2|PROLINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 NSRNITCIT 10
N NITC+T
Sbjct: 319 NKNNITCLT 327


>sp|TRM1_HALWD|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloquadratum walsbyi

Query: 2 NSRNITCIT 10
N+RN+ C+T
Sbjct: 149 NARNLVCVT 157


>sp|MOBA_PYRHO|PROBABLE molybdenum cofactor guanylyltransferase|Pyrococcus horikoshii

Query: 2 NSRNITCI 9
NSR I C+
Sbjct: 112 NSRKIACV 119


>sp|TRPC_SACS2|INDOLE-3-GLYCEROL phosphate synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 NSRNITCI 9
N RNIT I
Sbjct: 41 NKRNITAI 48




48|Sequence|236|245|ITCITCTDVR

>sp|RNP4_THEVO|RIBONUCLEASE P protein component 4|Thermoplasma volcanium (strain ATCC 51530

Query: 1 ITCITCTDVR 10
+TC+ C D+R
Sbjct: 83 VTCLECGDIR 92


>sp|Y1027_METJA|UNCHARACTERIZED protein MJ1027|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 CITCTD 8
C TCTD
Sbjct: 362 CFTCTD 367


>sp|MBHLA_PYRFU|MEMBRANE-BOUND hydrogenase subunit alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 3 CITCTD 8
C++CTD
Sbjct: 374 CLSCTD 379


>sp|RNP4_THEKO|RIBONUCLEASE P protein component 4|Thermococcus kodakarensis (strain ATCC

Query: 1 ITCITCTDV 9
ITC+ C ++
Sbjct: 94 ITCLNCGNI 102


>sp|SYS_SACS2|SERINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 ITCITCTD 8
++C CTD
Sbjct: 372 VSCSNCTD 379


>sp|SYS_SACI7|SERINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 ITCITCTD 8
++C CTD
Sbjct: 372 VSCSNCTD 379


>sp|SYS_SACI6|SERINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 ITCITCTD 8
++C CTD
Sbjct: 372 VSCSNCTD 379


>sp|SYS_SACI4|SERINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 ITCITCTD 8
++C CTD
Sbjct: 372 VSCSNCTD 379


>sp|SYS_SACI3|SERINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 ITCITCTD 8
++C CTD
Sbjct: 372 VSCSNCTD 379


>sp|SYS_SACI2|SERINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 ITCITCTD 8
++C CTD
Sbjct: 372 VSCSNCTD 379


>sp|SYS_SACI1|SERINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 ITCITCTD 8
++C CTD
Sbjct: 372 VSCSNCTD 379


>sp|SYS_METS5|SERINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 1 ITCITCTD 8
++C CTD
Sbjct: 372 VSCSNCTD 379


>sp|SYS_ARCFU|SERINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ITCITCTD 8
++C CTD
Sbjct: 369 VSCSNCTD 376


>sp|ILVD_METTH|DIHYDROXY-ACID dehydratase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 CITCT 7
C+TCT
Sbjct: 336 CVTCT 340


>sp|TH11_HALSA|PROBABLE transposase for insertion sequence|Halobacterium salinarum (strain

Query: 3 CITCTDVR 10
CI TDVR
Sbjct: 132 CIDSTDVR 139


>sp|TH11_HALS3|PROBABLE transposase for insertion sequence|Halobacterium salinarum (strain

Query: 3 CITCTDVR 10
CI TDVR
Sbjct: 132 CIDSTDVR 139


>sp|ILVD_METST|DIHYDROXY-ACID dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 CITCT 7
CITCT
Sbjct: 336 CITCT 340


>sp|FRHB_METJA|COENZYME F420 hydrogenase subunit beta|Methanocaldococcus jannaschii (strain

Query: 1 ITCITCTD 8
I C CTD
Sbjct: 196 IACHVCTD 203


>sp|TRM1_PYRAR|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrobaculum arsenaticum

Query: 1 ITCITCTD 8
+ C+T TD
Sbjct: 150 VICVTATD 157


>sp|TRM1_HALSA|TRNA (guanine(26)-N(2))-dimethyltransferase|Halobacterium salinarum

Query: 1 ITCITCTD 8
+ C+T TD
Sbjct: 144 LVCVTATD 151


>sp|TRM1_HALS3|TRNA (guanine(26)-N(2))-dimethyltransferase|Halobacterium salinarum

Query: 1 ITCITCTD 8
+ C+T TD
Sbjct: 144 LVCVTATD 151




49|Sequence|241|250|CTDVRSPVLV

>sp|SEPS_METHJ|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 TDVRSPVLV 10
TDVR PV +
Sbjct: 511 TDVRGPVFL 519


>sp|RNP3_METMA|RIBONUCLEASE P protein component 3|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 CTDVRSPV 8
C D+RSP+
Sbjct: 181 CYDLRSPM 188


>sp|RNP3_METAC|RIBONUCLEASE P protein component 3|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 CTDVRSPV 8
C D+RSP+
Sbjct: 181 CFDLRSPM 188


>sp|RNP3_METBF|RIBONUCLEASE P protein component 3|Methanosarcina barkeri (strain Fusaro /

Query: 1 CTDVRSPV 8
C D+RSP+
Sbjct: 181 CFDLRSPM 188


>sp|CDC45_SULAC|CELL division control protein 45|Sulfolobus acidocaldarius (strain ATCC

Query: 2 TDVRSPVL 9
TD++SP+L
Sbjct: 289 TDLKSPLL 296




50|Sequence|246|255|SPVLVFQCNS

>sp|PPSA_METJA|PROBABLE phosphoenolpyruvate synthase|Methanocaldococcus jannaschii (strain

Query: 1 SPVLVFQCNS 10
+P++VF C++
Sbjct: 816 TPIVVFNCHA 825


>sp|AMPD_METMA|ANHYDROMEVALONATE phosphate decarboxylase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SPVLVFQCNS 10
+PV VF+C++
Sbjct: 207 TPVEVFECSN 216


>sp|Y3532_METJA|UNCHARACTERIZED protein MJECL32|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 VLVFQCNS 10
VL+F+C S
Sbjct: 118 VLIFECKS 125


>sp|PUR7_METAC|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 SPVLVFQCNS 10
SPVLVF S
Sbjct: 114 SPVLVFDFKS 123


>sp|SFSA_METS3|SUGAR fermentation stimulation protein homolog|Methanobrevibacter smithii

Query: 3 VLVFQCNS 10
+LV++CN+
Sbjct: 213 ILVYKCNN 220


>sp|LONB_METJA|ARCHAEAL Lon protease|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PVLVFQC 8
PVL+++C
Sbjct: 181 PVLLYEC 187


>sp|APGM2_ARCFU|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Archaeoglobus fulgidus (strain ATCC

Query: 4 LVFQCN 9
LVF+CN
Sbjct: 89 LVFRCN 94




51|Sequence|251|260|FQCNSRHVIC

>sp|Y1664_METJA|UNCHARACTERIZED protein MJ1664|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FQCNSRHV 8
F+C +RH+
Sbjct: 152 FECKNRHI 159


>sp|TF2B2_THEAC|TRANSCRIPTION initiation factor IIB 2|Thermoplasma acidophilum (strain ATCC

Query: 2 QCNSRHVI 9
+CNS H+I
Sbjct: 13 ECNSEHLI 20


>sp|TRM1_THEVO|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermoplasma volcanium

Query: 1 FQCNSRHV 8
FQC S H+
Sbjct: 103 FQCVSSHI 110


>sp|PURL_METST|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 CNSRHVI 9
CNS HV+
Sbjct: 438 CNSTHVL 444


>sp|RL18_METHJ|LARGE ribosomal subunit protein uL18|Methanospirillum hungatei JF-1

Query: 5 SRHVIC 10
+RH+IC
Sbjct: 41 NRHIIC 46




52|Sequence|256|265|RHVICLDCFH

>sp|NPD_HALMA|NAD-DEPENDENT protein deacetylase|Haloarcula marismortui (strain ATCC 43049

Query: 1 RHVICLDCFH 10
R V+C DC H
Sbjct: 136 RRVVCDDCGH 145


>sp|RGYRA_NANEQ|REVERSE gyrase subunit A|Nanoarchaeum equitans (strain Kin4-M)

Query: 5 CLDCFH 10
CLDC H
Sbjct: 120 CLDCGH 125


>sp|GLCDH_METPS|GLUCOSE 1-dehydrogenase|Methanocella paludicola (strain DSM 17711

Query: 2 HVICLDCFH 10
H +C DC +
Sbjct: 280 HALCTDCIN 288


>sp|VHCG_METVO|F420-NON-REDUCING hydrogenase vhc subunit G|Methanococcus voltae

Query: 1 RHVICLDCF 9
RHV C C+
Sbjct: 232 RHVPCTGCY 240


>sp|GLCDH_METAR|GLUCOSE 1-dehydrogenase|Methanocella arvoryzae (strain DSM 22066

Query: 2 HVICLDC 8
H +C DC
Sbjct: 280 HSVCTDC 286


>sp|DNAJ_THEVO|CHAPERONE protein DnaJ|Thermoplasma volcanium (strain ATCC 51530

Query: 1 RHVICLDC 8
R+ IC DC
Sbjct: 148 RNAICPDC 155


>sp|DPOL1_SACS2|DNA polymerase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 HVICLD 7
H++C+D
Sbjct: 553 HIVCMD 558


>sp|PMDHL_METTH|PHOSPHOMEVALONATE dehydratase large subunit|Methanothermobacter thermautotrophicus

Query: 3 VICLDCFH 10
+ICL C H
Sbjct: 293 LICLGCPH 300


>sp|TDH_THEON|L-THREONINE 3-dehydrogenase|Thermococcus onnurineus (strain NA1)

Query: 2 HVICLDCF 9
H++C C+
Sbjct: 94 HIVCGKCY 101


>sp|TDH_THEKO|L-THREONINE 3-dehydrogenase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 HVICLDCF 9
H++C C+
Sbjct: 94 HIVCGKCY 101


>sp|TDH_PYRHO|L-THREONINE 3-dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 HVICLDCF 9
H++C C+
Sbjct: 94 HIVCGKCY 101


>sp|TDH_PYRFU|L-THREONINE 3-dehydrogenase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 HVICLDCF 9
H++C C+
Sbjct: 94 HIVCGKCY 101


>sp|TDH_PYRAB|L-THREONINE 3-dehydrogenase|Pyrococcus abyssi (strain GE5 /

Query: 2 HVICLDCF 9
H++C C+
Sbjct: 94 HIVCGKCY 101


>sp|Y090_METJA|UNCHARACTERIZED protease MJ0090|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RHVICLDCFH 10
RH C DC
Sbjct: 188 RHANCGDCLQ 197


>sp|Y002_METJA|UNCHARACTERIZED protein MJ0002|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 CLDCF 9
CLDC+
Sbjct: 167 CLDCY 171




53|Sequence|261|270|LDCFHLYCVT

>sp|Y188_ARCFU|PUTATIVE sulfur carrier protein AF_0188|Archaeoglobus fulgidus (strain

Query: 1 LDCFHLYC 8
+DC LYC
Sbjct: 4 VDCIGLYC 11


>sp|COFC_METHJ|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 LDCFHLYC 8
+D F LYC
Sbjct: 165 IDSFRLYC 172


>sp|DP2L_HALMA|DNA polymerase II large subunit|Haloarcula marismortui (strain ATCC 43049

Query: 2 DCFHLYCVT 10
D H+YC+T
Sbjct: 1121 DVDHVYCLT 1129


>sp|Y1479_METJA|UNCHARACTERIZED aminotransferase MJ1479|Methanocaldococcus jannaschii (strain

Query: 2 DCFHLYCVT 10
DC + YC T
Sbjct: 64 DCSYAYCPT 72


>sp|SAHH_THEKO|ADENOSYLHOMOCYSTEINASE kodakarensis (strain ATCC BAA-918

Query: 1 LDCFHLYCV 9
+DC YCV
Sbjct: 1 MDCTKDYCV 9


>sp|PYRI_SULTO|ASPARTATE carbamoyltransferase regulatory chain|Sulfurisphaera tokodaii

Query: 1 LDCFHLYCVT 10
L C +L C+T
Sbjct: 108 LKCTNLMCIT 117


>sp|LEU1_METKA|PROBABLE 2-isopropylmalate synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 LDCFHLYCVT 10
+DC H++ T
Sbjct: 89 VDCVHVFIAT 98


>sp|TRUD1_METJA|PROBABLE tRNA pseudouridine synthase D|Methanocaldococcus jannaschii (strain

Query: 4 FHLYCVT 10
FH YC T
Sbjct: 200 FHAYCGT 206


>sp|SAHH_PYRHO|ADENOSYLHOMOCYSTEINASE horikoshii (strain ATCC 700860

Query: 1 LDCFHLYCV 9
+DC YCV
Sbjct: 1 MDCGRDYCV 9


>sp|PYRI_SULAC|ASPARTATE carbamoyltransferase regulatory chain|Sulfolobus acidocaldarius

Query: 1 LDCFHLYCVT 10
L C + YC+T
Sbjct: 111 LKCPNPYCIT 120




54|Sequence|266|275|LYCVTRLNDR

>sp|PSTB1_NATPD|PHOSPHATE import ATP-binding protein PstB|Natronomonas pharaonis (strain

Query: 1 LYCVTRLNDR 10
L C+ R+NDR
Sbjct: 80 LRCINRMNDR 89


>sp|PSTB1_HALSA|PHOSPHATE import ATP-binding protein PstB|Halobacterium salinarum (strain

Query: 1 LYCVTRLNDR 10
L C+ R+NDR
Sbjct: 78 LRCINRMNDR 87


>sp|PSTB2_HALMA|PHOSPHATE import ATP-binding protein PstB|Haloarcula marismortui (strain ATCC

Query: 1 LYCVTRLNDR 10
L C+ R+NDR
Sbjct: 96 LRCLNRMNDR 105


>sp|PSTB_HALWD|PHOSPHATE import ATP-binding protein PstB|Haloquadratum walsbyi (strain DSM

Query: 1 LYCVTRLNDR 10
L C+ R+NDR
Sbjct: 90 LRCLNRMNDR 99


>sp|PSTB2_HALSA|PHOSPHATE import ATP-binding protein PstB|Halobacterium salinarum (strain

Query: 1 LYCVTRLNDR 10
L C+ R+NDR
Sbjct: 128 LRCLNRMNDR 137


>sp|PSTB3_NATPD|PHOSPHATE import ATP-binding protein PstB|Natronomonas pharaonis (strain

Query: 1 LYCVTRLNDR 10
L C+ R+ND+
Sbjct: 73 LRCINRMNDQ 82


>sp|PSTB_METJA|PHOSPHATE import ATP-binding protein PstB|Methanocaldococcus jannaschii

Query: 1 LYCVTRLND 9
L C+ RLND
Sbjct: 48 LRCLNRLND 56


>sp|PSTB1_HALMA|PHOSPHATE import ATP-binding protein PstB|Haloarcula marismortui (strain ATCC

Query: 1 LYCVTRLND 9
L C+ R+ND
Sbjct: 96 LRCINRMND 104


>sp|COAD_METMA|PHOSPHOPANTETHEINE adenylyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 YCVTRLND 9
Y VTRLND
Sbjct: 73 YEVTRLND 80


>sp|RPO3_THEAC|DNA-DIRECTED RNA polymerase subunit Rpo3|Thermoplasma acidophilum (strain ATCC

Query: 1 LYCVTRLNDR 10
LY + RL DR
Sbjct: 252 LYALNRLKDR 261


>sp|COAD_METAC|PHOSPHOPANTETHEINE adenylyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 YCVTRLND 9
Y +TRLND
Sbjct: 73 YEITRLND 80


>sp|PSTB_METMP|PHOSPHATE import ATP-binding protein PstB|Methanococcus maripaludis (strain

Query: 1 LYCVTRLND 9
L C+ R+ND
Sbjct: 47 LRCLNRMND 55


>sp|PSTB_METBU|PHOSPHATE import ATP-binding protein PstB|Methanococcoides burtonii (strain

Query: 1 LYCVTRLND 9
L C+ R+ND
Sbjct: 52 LRCLNRMND 60


>sp|DTDA_METHJ|D-AMINOACYL-TRNA deacylase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 CVTRLNDR 10
CVT L DR
Sbjct: 365 CVTLLQDR 372


>sp|CDC6_CENSY|ORC1-TYPE DNA replication protein|Cenarchaeum symbiosum (strain A)

Query: 1 LYCVTRLNDR 10
LY +TR N+R
Sbjct: 180 LYQLTRANER 189


>sp|SYM_METLZ|METHIONINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 YCVTRLND 9
+C+TR+ D
Sbjct: 228 WCITRMMD 235


>sp|AMTAB_PYRHO|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 2 YCVTRL 7
YC TRL
Sbjct: 154 YCATRL 159




55|Sequence|271|280|RLNDRQFVHD

>sp|ARGDC_SULTO|ARGININE decarboxylase proenzyme|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 LNDRQFVHD 10
LND+ F+H+
Sbjct: 31 LNDKDFLHN 39


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 RLNDRQFVH 9
RL+D F+H
Sbjct: 280 RLHDSDFIH 288


>sp|RS3_NATPD|SMALL ribosomal subunit protein uS3|Natronomonas pharaonis (strain ATCC

Query: 3 NDRQFVHD 10
++ QF+HD
Sbjct: 3 DEHQFIHD 10


>sp|THSG_SACSH|CHAPERONIN subunit gamma|Saccharolobus shibatae (strain ATCC 51178

Query: 4 DRQFVHD 10
DR+ VHD
Sbjct: 142 DRKIVHD 148


>sp|THSG_SACS2|CHAPERONIN subunit gamma|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 DRQFVHD 10
DR+ VHD
Sbjct: 142 DRKIVHD 148


>sp|AATB_THEAC|A-TYPE ATP synthase subunit B|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 NDRQFVH 9
NDR+++H
Sbjct: 398 NDRKYLH 404


>sp|Y776_METJA|UNCHARACTERIZED protein MJ0776|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LNDRQFVHD 10
++ R F+HD
Sbjct: 328 ISKRDFIHD 336




56|Sequence|276|285|QFVHDPQLGY

>sp|PT1_HALVD|PHOSPHOENOLPYRUVATE-PROTEIN phosphotransferase|Haloferax volcanii (strain ATCC 29605

Query: 1 QFVHDPQL 8
QF++DPQ+
Sbjct: 82 QFLNDPQI 89


>sp|CARB2_METKA|CARBAMOYL phosphate synthase large chain,|Methanopyrus kandleri (strain AV19

Query: 1 QFVHDPQ 7
QFV+DP+
Sbjct: 273 QFVYDPE 279


>sp|PSA_ARCFU|PROTEASOME subunit alpha|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 VHDPQLGY 10
+H PQ+GY
Sbjct: 1 MHLPQMGY 8


>sp|TF2B_PYRHO|TRANSCRIPTION initiation factor IIB|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 QFVHDPQLG 9
+F++DP+ G
Sbjct: 14 EFIYDPERG 22


>sp|TF2B_PYRAB|TRANSCRIPTION initiation factor IIB|Pyrococcus abyssi (strain GE5 /

Query: 1 QFVHDPQLG 9
+F++DP+ G
Sbjct: 14 EFIYDPERG 22


>sp|SYY_SULTO|TYROSINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 FVHDP 6
FVHDP
Sbjct: 249 FVHDP 253


>sp|PUR7_SULTO|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 HDPQLGY 10
HDP L Y
Sbjct: 126 HDPMLNY 132


>sp|SYD_THEVO|ASPARTATE--TRNA(ASP) ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 QFVHDPQL 8
Q VHDP L
Sbjct: 357 QRVHDPDL 364


>sp|TRPF_THEVO|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 QFVHDPQL 8
F HDP+L
Sbjct: 75 HFDHDPEL 82


>sp|TF2B2_THEKO|TRANSCRIPTION initiation factor IIB 2|Thermococcus kodakarensis (strain ATCC

Query: 1 QFVHDPQLG 9
+F++DP+ G
Sbjct: 17 EFIYDPRRG 25


>sp|TRET_PYRHO|TREHALOSE synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 FVHDPQ 7
VHDPQ
Sbjct: 130 LVHDPQ 135


>sp|SURE_HALSA|5'-NUCLEOTIDASE SurE|Halobacterium salinarum (strain ATCC 700922

Query: 3 VHDPQLGY 10
VHD LGY
Sbjct: 56 VHDHDLGY 63


>sp|SURE_HALS3|5'-NUCLEOTIDASE SurE|Halobacterium salinarum (strain ATCC 29341

Query: 3 VHDPQLGY 10
VHD LGY
Sbjct: 56 VHDHDLGY 63


>sp|SURE_NATPD|5'-NUCLEOTIDASE SurE|Natronomonas pharaonis (strain ATCC 35678

Query: 3 VHDPQLGY 10
+HD +LGY
Sbjct: 51 LHDHELGY 58


>sp|TF2B1_THEKO|TRANSCRIPTION initiation factor IIB 1|Thermococcus kodakarensis (strain ATCC

Query: 1 QFVHDPQLG 9
+F++DP G
Sbjct: 14 EFIYDPSRG 22


>sp|PUR7_SULAC|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 HDPQLGY 10
HDP L Y
Sbjct: 126 HDPLLNY 132


>sp|Y1514_ARCFU|UNCHARACTERIZED protein AF_1514|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 VHDPQLGY 10
VHD + GY
Sbjct: 39 VHDSKTGY 46


>sp|LIPA_PICTO|LIPOYL synthase|Picrophilus torridus (strain ATCC 700027

Query: 3 VHDPQLGY 10
V DP+ GY
Sbjct: 168 VRDPRAGY 175


>sp|PUR7_SACS2|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 HDPQLGY 10
HDP L Y
Sbjct: 126 HDPLLNY 132


>sp|SURE_HALMA|5'-NUCLEOTIDASE SurE|Haloarcula marismortui (strain ATCC 43049

Query: 3 VHDPQLGY 10
VH+ +LGY
Sbjct: 54 VHEHELGY 61


>sp|TYW3_SACS2|TRNA(PHE) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-

Query: 4 HDPQLGY 10
HD ++GY
Sbjct: 17 HDKEIGY 23


>sp|GLYA_HALWD|SERINE hydroxymethyltransferase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 QFVHDPQLGY 10
Q+ DP+ GY
Sbjct: 142 QYEVDPETGY 151


>sp|Y2543_HALSA|PROTEIN VNG_2543C|Halobacterium salinarum (strain ATCC 700922

Query: 4 HDPQLGY 10
HD QLG+
Sbjct: 79 HDQQLGH 85


>sp|Y267_ARCFU|UNCHARACTERIZED protein AF_0267|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 FVHDPQLGY 10
++H P GY
Sbjct: 384 YLHPPNYGY 392


>sp|Y1864_ARCFU|UNCHARACTERIZED protein AF_1864|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 VHDPQLG 9
V+DP+LG
Sbjct: 67 VYDPRLG 73




57|Sequence|281|290|PQLGYSLPCV

>sp|SRP54_THEKO|SIGNAL recognition particle 54 kDa|Thermococcus kodakarensis (strain ATCC

Query: 1 PQLGYSLP 8
P LGYSLP
Sbjct: 354 PGLGYSLP 361


>sp|SRP54_THEGJ|SIGNAL recognition particle 54 kDa|Thermococcus gammatolerans (strain DSM

Query: 1 PQLGYSLP 8
P LGYSLP
Sbjct: 354 PGLGYSLP 361


>sp|SRP54_PYRHO|SIGNAL recognition particle 54 kDa|Pyrococcus horikoshii (strain ATCC

Query: 1 PQLGYSLP 8
P LGYSLP
Sbjct: 354 PGLGYSLP 361


>sp|SRP54_PYRFU|SIGNAL recognition particle 54 kDa|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PQLGYSLP 8
P LGYSLP
Sbjct: 354 PGLGYSLP 361


>sp|SRP54_PYRAB|SIGNAL recognition particle 54 kDa|Pyrococcus abyssi (strain GE5 /

Query: 1 PQLGYSLP 8
P LGYSLP
Sbjct: 354 PGLGYSLP 361


>sp|SRP54_THEON|SIGNAL recognition particle 54 kDa|Thermococcus onnurineus (strain NA1)

Query: 1 PQLGYSLP 8
P +GYSLP
Sbjct: 354 PGMGYSLP 361


>sp|SYY_ARCFU|TYROSINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PQLGYSLP 8
P+LGYS P
Sbjct: 192 PRLGYSSP 199


>sp|HIS51_METMP|IMIDAZOLE glycerol phosphate synthase subunit|Methanococcus maripaludis

Query: 4 GYSLPCV 10
GY PC+
Sbjct: 166 GYEFPCI 172


>sp|RNZ_METMA|RIBONUCLEASE Z|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PQLGYSL 7
P LGYSL
Sbjct: 141 PSLGYSL 147


>sp|SYY_METKA|TYROSINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 PQLGYSLP 8
P+LGY P
Sbjct: 192 PKLGYDSP 199


>sp|MFNA_PYRHO|L-ASPARTATE/L-GLUTAMATE decarboxylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 QLGYSLP 8
+LGY LP
Sbjct: 208 ELGYELP 214


>sp|MFNA_PYRFU|PROBABLE L-aspartate decarboxylase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 QLGYSLP 8
+LGY LP
Sbjct: 208 ELGYDLP 214


>sp|GLGA_METJA|PROBABLE glycogen synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 LGYSLP 8
+GYSLP
Sbjct: 359 IGYSLP 364




58|Sequence|286|295|SLPCVAGCPN

>sp|SUDHA_PYRFU|SULFIDE dehydrogenase subunit alpha|Pyrococcus furiosus (strain ATCC

Query: 3 PCVAGCP 9
PC+ GCP
Sbjct: 51 PCIKGCP 57


>sp|Y280_METSM|UPF0280 protein ORFE|Methanobrevibacter smithii

Query: 2 LPCVAGC 8
+ CVAGC
Sbjct: 77 MACVAGC 83


>sp|Y088_METS3|UPF0280 protein Msm_0088|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 LPCVAGC 8
+ CVAGC
Sbjct: 78 MACVAGC 84


>sp|AATE_METVS|A-TYPE ATP synthase subunit E|Methanococcus vannielii (strain ATCC 35089

Query: 1 SLPCVAGC 8
SLP + GC
Sbjct: 161 SLPIIGGC 168


>sp|FSR_METJA|COENZYME F420-dependent sulfite reductase|Methanocaldococcus jannaschii

Query: 4 CVAGCPN 10
C+ CPN
Sbjct: 530 CIKNCPN 536


>sp|AROD_METBU|3-DEHYDROQUINATE dehydratase|Methanococcoides burtonii (strain DSM 6242

Query: 1 SLPCVA 6
SLPC+A
Sbjct: 65 SLPCIA 70


>sp|Y551_METJA|UNCHARACTERIZED protein MJ0551|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 VAGCPN 10
V+GCPN
Sbjct: 133 VSGCPN 138


>sp|Y1067_METMP|UNCHARACTERIZED iron-sulfur protein MMP1067|Methanococcus maripaludis (strain DSM

Query: 2 LPCVAGCP 9
L C+A CP
Sbjct: 141 LSCIAMCP 148


>sp|PURL_IGNH4|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 SLPCVAGCP 9
S+ CV CP
Sbjct: 164 SVACVGVCP 172


>sp|Y575_METJA|UNCHARACTERIZED protein MJ0575|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PCVAG 7
PCVAG
Sbjct: 196 PCVAG 200


>sp|HDRA_METTM|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit A|Methanothermobacter

Query: 4 CVAGCPN 10
CVA CP+
Sbjct: 626 CVAACPS 632


>sp|HDRA_METTH|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit A|Methanothermobacter

Query: 4 CVAGCPN 10
CVA CP+
Sbjct: 627 CVAACPS 633


>sp|NARH_HALMT|RESPIRATORY nitrate reductase subunit beta|Haloferax mediterranei (strain ATCC

Query: 4 CVAGCP 9
CV GCP
Sbjct: 187 CVEGCP 192


>sp|UPPP_METTP|UNDECAPRENYL-DIPHOSPHATASE thermoacetophila (strain DSM 6194

Query: 1 SLPCVAGCP 9
+L C+AG P
Sbjct: 192 ALDCLAGSP 200


>sp|ACDA_METBU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanococcoides

Query: 2 LPCVAGCPN 10
L C CPN
Sbjct: 417 LKCEVACPN 425


>sp|SYK_METMP|LYSINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 LPCVAGC 8
+PC GC
Sbjct: 91 IPCPQGC 97


>sp|SYK_METMI|LYSINE--TRNA ligase|Methanococcus maripaludis (Methanococcus deltae)

Query: 2 LPCVAGC 8
+PC GC
Sbjct: 91 IPCPQGC 97


>sp|SYK_METTH|LYSINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 LPCVAGC 8
+PC GC
Sbjct: 111 IPCPEGC 117


>sp|SYK_METST|LYSINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 LPCVAGC 8
+PC GC
Sbjct: 92 IPCPEGC 98


>sp|SYK_METJA|LYSINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LPCVAGC 8
+PC GC
Sbjct: 91 IPCPEGC 97


>sp|RNFB_METAC|ION-TRANSLOCATING oxidoreductase complex subunit B|Methanosarcina acetivorans (strain

Query: 4 CVAGCPN 10
C+A CPN
Sbjct: 178 CIAACPN 184


>sp|IF2G_META3|TRANSLATION initiation factor 2 subunit|Methanococcus aeolicus (strain ATCC

Query: 4 CVAGCP 9
CVAG P
Sbjct: 311 CVAGAP 316


>sp|Y1349_METJA|UNCHARACTERIZED protein MJ1349|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 CVAGCP 9
CVA CP
Sbjct: 26 CVAVCP 31




59|Sequence|291|300|AGCPNSLIKE

>sp|KORB_ARCFU|2-OXOGLUTARATE synthase subunit KorB|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 AGCPNSLI 8
AGCPN ++
Sbjct: 20 AGCPNGIV 27


>sp|UREG_SULTO|UREASE accessory protein UreG|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 AGCPNSLIKE 10
GCP++ I+E
Sbjct: 71 GGCPHTAIRE 80


>sp|UREG_METS5|UREASE accessory protein UreG|Metallosphaera sedula (strain ATCC 51363

Query: 1 AGCPNSLIKE 10
GCP++ I+E
Sbjct: 70 GGCPHTAIRE 79


>sp|PTH_THESM|PEPTIDYL-TRNA hydrolase|Thermococcus sibiricus (strain DSM 12597

Query: 2 GCPNSLIKE 10
G PNSLI++
Sbjct: 76 GIPNSLIRD 84


>sp|DSRA_ARCFU|SULFITE reductase, dissimilatory-type subunit alpha|Archaeoglobus fulgidus

Query: 1 AGCPNSLI 8
AGCPN +
Sbjct: 218 AGCPNDCV 225


>sp|PUS10_METKA|TRNA pseudouridine synthase Pus10|Methanopyrus kandleri (strain AV19 /

Query: 1 AGCPN 5
AGCPN
Sbjct: 212 AGCPN 216


>sp|PTH_PYRHO|PEPTIDYL-TRNA hydrolase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GCPNSLIKE 10
G PN+LI++
Sbjct: 79 GLPNALIRD 87


>sp|EF2_METPE|ELONGATION factor 2|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 4 PNSLIKE 10
PNSL+K+
Sbjct: 701 PNSLVKD 707


>sp|Y551_METJA|UNCHARACTERIZED protein MJ0551|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AGCPNS 6
+GCPNS
Sbjct: 134 SGCPNS 139


>sp|TRM1_METST|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosphaera stadtmanae

Query: 1 AGCPNSLIKE 10
A CPN L +E
Sbjct: 243 AHCPNCLHRE 252


>sp|FSR_METJA|COENZYME F420-dependent sulfite reductase|Methanocaldococcus jannaschii

Query: 1 AGCPNSLIK 9
+GCPN ++
Sbjct: 466 SGCPNGCVR 474


>sp|RL13_NANEQ|LARGE ribosomal subunit protein uL13|Nanoarchaeum equitans (strain

Query: 2 GCPNSLIKE 10
G P +LIKE
Sbjct: 124 GYPEALIKE 132


>sp|SYL2_SACS2|LEUCINE--TRNA ligase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GCPNSLIKE 10
G P+++IKE
Sbjct: 558 GIPSNIIKE 566


>sp|DTDA_METBF|D-AMINOACYL-TRNA deacylase|Methanosarcina barkeri (strain Fusaro /

Query: 2 GCPNSL 7
GCP SL
Sbjct: 131 GCPKSL 136


>sp|AROC_METBU|CHORISMATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 4 PNSLIKE 10
PNSL+K+
Sbjct: 360 PNSLLKQ 366


>sp|ACDA_METTH|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanothermobacter

Query: 3 CPNSL 7
CPNSL
Sbjct: 419 CPNSL 423


>sp|ACDA_METBU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanococcoides

Query: 1 AGCPNSL 7
CPNSL
Sbjct: 421 VACPNSL 427




60|Sequence|296|305|SLIKELHHFR

>sp|Y1049_METJA|UNCHARACTERIZED protein MJ1049|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SLIKELHHFR 10
S++KEL+ FR
Sbjct: 111 SILKELNEFR 120


>sp|TRPC_PYRAR|INDOLE-3-GLYCEROL phosphate synthase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 SLIKELHH 8
+LIKEL H
Sbjct: 233 ALIKELRH 240


>sp|IPYR_METMA|INORGANIC pyrophosphatase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 LIKELHHF 9
L+KE+ HF
Sbjct: 119 LLKEITHF 126


>sp|HEM3_METJA|PROBABLE porphobilinogen deaminase|Methanocaldococcus jannaschii (strain

Query: 1 SLIKELHHFR 10
S++KE++H R
Sbjct: 205 SILKEINHER 214


>sp|AATA_THEVO|A-TYPE ATP synthase subunit A|Thermoplasma volcanium (strain ATCC 51530

Query: 1 SLIKELH 7
S+IKE+H
Sbjct: 754 SIIKEIH 760


>sp|RFRNP_METBU|RNA-FREE ribonuclease P|Methanococcoides burtonii (strain DSM 6242

Query: 1 SLIKELHHF 9
S+ KELH F
Sbjct: 54 SVYKELHEF 62




61|Sequence|301|310|LHHFRILGEE

>sp|SYL1_SULTO|LEUCINE--TRNA ligase 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LHHFRILGEE 10
HHF I GE+
Sbjct: 598 FHHFAIFGEK 607


>sp|Y054_ARCFU|UNCHARACTERIZED protein AF_0054|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 HFRILGEE 10
HFRI GEE
Sbjct: 8 HFRIYGEE 15


>sp|TRM1_METKA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanopyrus kandleri

Query: 2 HHFRILGE 9
HH R++GE
Sbjct: 215 HHVRVIGE 222


>sp|Y1566_METJA|UNCHARACTERIZED protein MJ1566|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LHHFRILG 8
LHH +ILG
Sbjct: 407 LHHIKILG 414


>sp|SYA_CALMQ|ALANINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 3 HFRILGEE 10
H+R++G+E
Sbjct: 220 HYRVIGDE 227


>sp|RIB7_METTH|2,5-DIAMINO-6-RIBOSYLAMINO-4(3H)-PYRIMIDINONE 5'-phosphate reductase|Methanothermobacter thermautotrophicus

Query: 3 HFRILGEE 10
HFR+L +E
Sbjct: 86 HFRVLNDE 93


>sp|SYL1_SULAC|LEUCINE--TRNA ligase 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 HHFRILGEE 10
HH +LGE+
Sbjct: 598 HHVGVLGED 606


>sp|ILVD_METHJ|DIHYDROXY-ACID dehydratase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 HFRILGE 9
H R+LGE
Sbjct: 49 HLRVLGE 55


>sp|NIFK_METBA|NITROGENASE molybdenum-iron protein beta chain|Methanosarcina barkeri

Query: 1 LHHFRILG 8
LH+F I+G
Sbjct: 417 LHYFPIMG 424


>sp|HCP_METVS|HYDROXYLAMINE reductase|Methanococcus vannielii (strain ATCC 35089

Query: 1 LHHFRILG 8
LHH +LG
Sbjct: 156 LHHANVLG 163


>sp|SYM_PYRCJ|METHIONINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 LHHFRILGEE 10
+ HF+ LG+E
Sbjct: 265 VEHFKRLGKE 274


>sp|Y2141_ARCFU|UNCHARACTERIZED protein AF_2141|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 HFRILGEE 10
+FR +GEE
Sbjct: 140 YFRAIGEE 147


>sp|APGM2_METJA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanocaldococcus jannaschii (strain

Query: 3 HFRILGEE 10
H RI GEE
Sbjct: 383 HLRIRGEE 390




62|Sequence|306|315|ILGEEQYNRY

>sp|Y020_SULAC|UPF0284 protein Saci_0020|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 ILGEEQYNRY 10
ILGEE N Y
Sbjct: 136 ILGEELANSY 145


>sp|MFNA_METKA|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanopyrus kandleri (strain

Query: 2 LGEEQYNR 9
LGEE Y R
Sbjct: 273 LGEEGYRR 280


>sp|MCRA_METKA|METHYL-COENZYME M reductase I subunit|Methanopyrus kandleri (strain AV19 /

Query: 1 ILGEEQYNRY 10
+ G EQY RY
Sbjct: 382 LYGLEQYERY 391


>sp|FER_THEAC|ZINC-CONTAINING ferredoxin|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 GEEQYNRY 10
G E++N+Y
Sbjct: 104 GSEEWNKY 111


>sp|Y374_METJA|UNCHARACTERIZED protein MJ0374|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GEEQYNRY 10
GEE +N+Y
Sbjct: 96 GEEFFNKY 103


>sp|Y875_METJA|UNCHARACTERIZED protein MJ0875|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LGEEQYNRY 10
L EE YN++
Sbjct: 187 LAEESYNKF 195


>sp|TRUB_NANEQ|PROBABLE tRNA pseudouridine synthase B|Nanoarchaeum equitans (strain

Query: 3 GEEQYNR 9
GE+ YNR
Sbjct: 44 GEDPYNR 50


>sp|SYK_METMJ|LYSINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 LGEEQYNRY 10
LGEEQ++ +
Sbjct: 93 LGEEQFDLF 101




63|Sequence|311|320|QYNRYQQYGA

>sp|MRE11_METTH|DNA double-strand break repair protein|Methanothermobacter

Query: 2 YNRYQQYGA 10
+ RYQQY A
Sbjct: 10 FRRYQQYKA 18


>sp|CBID_THEAC|COBALT-PRECORRIN-5B C(1)-methyltransferase|Thermoplasma acidophilum (strain ATCC

Query: 1 QYNRYQQYG 9
Q N +QQYG
Sbjct: 3 QSNPFQQYG 11


>sp|MSMJL_METJA|LARGE-CONDUCTANCE mechanosensitive channel MscMJLR|Methanocaldococcus jannaschii

Query: 1 QYNRYQQY 8
+YN YQ+Y
Sbjct: 319 RYNGYQKY 326


>sp|RGYR1_SACS2|REVERSE gyrase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 NRYQQY 8
NRYQ+Y
Sbjct: 869 NRYQKY 874


>sp|FPOL_METMA|F(420)H(2) dehydrogenase subunit L|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 YNRYQQY 8
YNRY Q+
Sbjct: 588 YNRYYQH 594


>sp|CAS1_KORCO|CRISPR-ASSOCIATED endonuclease Cas1|Korarchaeum cryptofilum (strain OPF8)

Query: 3 NRYQQY 8
NRY+QY
Sbjct: 91 NRYEQY 96


>sp|CBID_THEVO|COBALT-PRECORRIN-5B C(1)-methyltransferase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 NRYQQYG 9
N +QQYG
Sbjct: 11 NPFQQYG 17


>sp|HDRB1_METAC|FERREDOXIN:COB-COM heterodisulfide reductase subunit B|Methanosarcina acetivorans

Query: 1 QYNRYQ 6
QY+RYQ
Sbjct: 256 QYDRYQ 261


>sp|RL4_METHJ|LARGE ribosomal subunit protein uL4|Methanospirillum hungatei JF-1

Query: 1 QYNRYQQYGA 10
Q RYQ +GA
Sbjct: 39 QSRRYQPHGA 48


>sp|SYH_SACI7|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 QYNRYQQY 8
QY RY+++
Sbjct: 114 QYGRYREF 121


>sp|SYH_SACI6|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 QYNRYQQY 8
QY RY+++
Sbjct: 114 QYGRYREF 121


>sp|SYH_SACI4|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 QYNRYQQY 8
QY RY+++
Sbjct: 114 QYGRYREF 121


>sp|SYH_SACI2|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 QYNRYQQY 8
QY RY+++
Sbjct: 114 QYGRYREF 121


>sp|SYH_SACSH|HISTIDINE--TRNA ligase|Saccharolobus shibatae (strain ATCC 51178

Query: 1 QYNRYQQY 8
QY RY+++
Sbjct: 114 QYGRYREF 121


>sp|SYH_SACS2|HISTIDINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 QYNRYQQY 8
QY RY+++
Sbjct: 114 QYGRYREF 121


>sp|SYH_SACI1|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 QYNRYQQY 8
QY RY+++
Sbjct: 114 QYGRYREF 121


>sp|SYH_SACI3|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 QYNRYQQY 8
QY RY+++
Sbjct: 114 QYGRYREF 121


>sp|RGYR2_SULTO|REVERSE gyrase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 NRYQQYGA 10
NRY +Y A
Sbjct: 852 NRYDEYNA 859




64|Sequence|316|325|QQYGAEECVL

>sp|NADE_HALSA|NH(3)-DEPENDENT NAD(+) synthetase|Halobacterium salinarum (strain ATCC 700922

Query: 4 GAEECVL 10
GAE CVL
Sbjct: 38 GAERCVL 44


>sp|NADE_HALS3|NH(3)-DEPENDENT NAD(+) synthetase|Halobacterium salinarum (strain ATCC 29341

Query: 4 GAEECVL 10
GAE CVL
Sbjct: 38 GAERCVL 44


>sp|RL4_HALSA|LARGE ribosomal subunit protein uL4|Halobacterium salinarum (strain

Query: 1 QQYGAEE 7
Q+YGA+E
Sbjct: 44 QEYGADE 50


>sp|RL4_HALS3|LARGE ribosomal subunit protein uL4|Halobacterium salinarum (strain

Query: 1 QQYGAEE 7
Q+YGA+E
Sbjct: 44 QEYGADE 50


>sp|PCNA_METMA|DNA polymerase sliding clamp|Methanosarcina mazei (strain ATCC

Query: 1 QQYGAEEC 8
++Y A+EC
Sbjct: 57 EEYSADEC 64


>sp|ASPD_METVS|L-ASPARTATE dehydrogenase|Methanococcus vannielii (strain ATCC 35089

Query: 1 QQYGAEECV 9
++ GAE CV
Sbjct: 46 EETGAESCV 54


>sp|PELO_HALLT|PROTEIN pelota homolog|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 QQYGAEE 7
QQYG EE
Sbjct: 153 QQYGTEE 159




65|Sequence|321|330|EECVLQMGGV

>sp|CAS8B_HALVD|CRISPR-ASSOCIATED protein Cas8b|Haloferax volcanii (strain ATCC 29605

Query: 1 EECVLQMGGV 10
E CVL+ GGV
Sbjct: 304 ETCVLRRGGV 313


>sp|HELS_ARCFU|ATP-DEPENDENT DNA helicase Hel308|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EECVLQMGGV 10
EECV + GGV
Sbjct: 236 EECVAENGGV 245


>sp|TRM1_THEAC|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermoplasma acidophilum

Query: 2 ECVLQMGG 9
ECVLQ G
Sbjct: 104 ECVLQHGA 111


>sp|RNZ_METTH|RIBONUCLEASE Z|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 ECVLQMG 8
EC+++MG
Sbjct: 99 ECIMKMG 105


>sp|AMPPA_METM5|AMP phosphorylase|Methanococcus maripaludis (strain C5 /

Query: 2 ECVLQMGG 9
ECVL GG
Sbjct: 316 ECVLTYGG 323


>sp|AMPPA_META3|AMP phosphorylase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 ECVLQMGG 9
ECVL GG
Sbjct: 315 ECVLTYGG 322


>sp|AMPPA_METMP|AMP phosphorylase|Methanococcus maripaludis (strain DSM 14266

Query: 2 ECVLQMGG 9
ECVL GG
Sbjct: 316 ECVLTYGG 323


>sp|AMPPA_METM6|AMP phosphorylase|Methanococcus maripaludis (strain C6 /

Query: 2 ECVLQMGG 9
ECVL GG
Sbjct: 316 ECVLTYGG 323


>sp|AMPPA_METVS|AMP phosphorylase|Methanococcus vannielii (strain ATCC 35089

Query: 2 ECVLQMGG 9
ECVL GG
Sbjct: 316 ECVLTYGG 323


>sp|AMPPA_METM7|AMP phosphorylase|Methanococcus maripaludis (strain C7 /

Query: 2 ECVLQMGG 9
ECVL GG
Sbjct: 316 ECVLTYGG 323


>sp|THIM_HALWD|HYDROXYETHYLTHIAZOLE kinase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 EECVLQMGGV 10
E C+L MG V
Sbjct: 70 EACLLNMGTV 79




66|Sequence|326|335|QMGGVLCPRP

>sp|RL34_METKA|LARGE ribosomal subunit protein eL34|Methanopyrus kandleri (strain AV19

Query: 3 GGVLCP 8
GGVLCP
Sbjct: 70 GGVLCP 75


>sp|Y057_METAR|UPF0212 protein UNCMA_00570|Methanocella arvoryzae (strain DSM 22066

Query: 1 QMGGVLCP 8
++GG CP
Sbjct: 46 EVGGTFCP 53


>sp|GCSPA_SULTO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Sulfurisphaera

Query: 2 MGGVLCP 8
+GG LCP
Sbjct: 75 LGGGLCP 81


>sp|CAPPA_METHJ|PHOSPHOENOLPYRUVATE carboxylase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 MGGVLCPR 9
MGGV PR
Sbjct: 367 MGGVSLPR 374


>sp|APBC_METMP|IRON-SULFUR cluster carrier protein|Methanococcus maripaludis (strain DSM 14266

Query: 2 MGGVLCP 8
MGG +CP
Sbjct: 213 MGGFVCP 219


>sp|AATE3_METHJ|A-TYPE ATP synthase subunit E|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 GGVLCPR 9
GGV+C R
Sbjct: 159 GGVICER 165


>sp|RL34_METJA|LARGE ribosomal subunit protein eL34|Methanocaldococcus jannaschii

Query: 3 GGVLCPR 9
GG LCPR
Sbjct: 70 GGYLCPR 76


>sp|GCSPA_SULAC|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Sulfolobus

Query: 2 MGGVLCP 8
+GG LCP
Sbjct: 75 IGGGLCP 81


>sp|RL34_METVS|LARGE ribosomal subunit protein eL34|Methanococcus vannielii (strain

Query: 2 MGGVLCPR 9
GG LCP+
Sbjct: 69 FGGALCPK 76


>sp|PYRI_METB6|ASPARTATE carbamoyltransferase regulatory chain|Methanoregula boonei (strain

Query: 3 GGVLCPRP 10
G V CP P
Sbjct: 117 GSVRCPNP 124


>sp|DNLJ_NATPD|DNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 GGVLCP 8
GGV CP
Sbjct: 447 GGVACP 452


>sp|NTPTH_METKA|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Methanopyrus kandleri (strain AV19 /

Query: 2 MGGVLCP 8
+GG+ CP
Sbjct: 33 VGGIYCP 39


>sp|ARGJ_ARCFU|ARGININE biosynthesis bifunctional protein ArgJ|Archaeoglobus fulgidus

Query: 2 MGGVLC 7
+GGVLC
Sbjct: 6 IGGVLC 11


>sp|PYRDB_SACS2|DIHYDROOROTATE dehydrogenase B (NAD(+)), catalytic|Saccharolobus solfataricus

Query: 4 GVLCP 8
GVLCP
Sbjct: 83 GVLCP 87


>sp|DNLJ_HALLT|DNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 GGVLCP 8
GG++CP
Sbjct: 462 GGLVCP 467


>sp|RL34_STAMF|LARGE ribosomal subunit protein eL34|Staphylothermus marinus (strain

Query: 3 GGVLCPR 9
GG +CPR
Sbjct: 70 GGYICPR 76


>sp|RPO12_NATPD|DNA-DIRECTED RNA polymerase subunit Rpo12|Natronomonas pharaonis (strain ATCC

Query: 1 QMGGVLCP 8
+ GGV CP
Sbjct: 16 EYGGVRCP 23


>sp|RL34_METM6|LARGE ribosomal subunit protein eL34|Methanococcus maripaludis (strain

Query: 2 MGGVLCPR 9
GG LCP+
Sbjct: 69 FGGNLCPK 76


>sp|RPO12_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo12|Halobacterium salinarum (strain ATCC

Query: 1 QMGGVLCP 8
+ GGV CP
Sbjct: 16 EYGGVRCP 23


>sp|RPO12_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo12|Halobacterium salinarum (strain ATCC

Query: 1 QMGGVLCP 8
+ GGV CP
Sbjct: 16 EYGGVRCP 23


>sp|RL34_METM5|LARGE ribosomal subunit protein eL34|Methanococcus maripaludis (strain

Query: 2 MGGVLCPR 9
GG LCP+
Sbjct: 69 FGGNLCPK 76


>sp|AMT2_METJA|AMMONIUM transporter Amt2|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 MGGVLCPR 9
+GG+LC +
Sbjct: 85 IGGILCSK 92


>sp|RPO12_HALMA|DNA-DIRECTED RNA polymerase subunit Rpo12|Haloarcula marismortui (strain ATCC

Query: 1 QMGGVLCP 8
+ GGV CP
Sbjct: 16 EYGGVRCP 23


>sp|RL34_METM7|LARGE ribosomal subunit protein eL34|Methanococcus maripaludis (strain

Query: 2 MGGVLCPR 9
GG LCP+
Sbjct: 69 FGGNLCPK 76




67|Sequence|331|340|LCPRPGCGAG

>sp|PYRI_METMJ|ASPARTATE carbamoyltransferase regulatory chain|Methanoculleus marisnigri

Query: 2 CPRPGC 7
CP PGC
Sbjct: 113 CPNPGC 118


>sp|PYRI_METB6|ASPARTATE carbamoyltransferase regulatory chain|Methanoregula boonei (strain

Query: 2 CPRPGC 7
CP PGC
Sbjct: 121 CPNPGC 126


>sp|PYRI_METPE|ASPARTATE carbamoyltransferase regulatory chain|Methanosphaerula palustris

Query: 2 CPRPGC 7
CP PGC
Sbjct: 113 CPNPGC 118


>sp|BGAL_HALLT|BETA-GALACTOSIDASE Bga|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 CPRPGCGA 9
CP+PG GA
Sbjct: 324 CPQPGEGA 331


>sp|DPOL2_SACS2|DNA polymerase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LCPRPGC 7
L P+PGC
Sbjct: 330 LFPQPGC 336


>sp|PYRI_METTH|ASPARTATE carbamoyltransferase regulatory chain|Methanothermobacter

Query: 2 CPRPGC 7
CP P C
Sbjct: 111 CPNPNC 116


>sp|PYRI_HALSA|ASPARTATE carbamoyltransferase regulatory chain|Halobacterium salinarum

Query: 2 CPRPGC 7
CP P C
Sbjct: 110 CPNPNC 115


>sp|GLNA1_METMA|GLUTAMINE synthetase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 CPRPGC 7
CP P C
Sbjct: 339 CPDPAC 344


>sp|PYRI_THEKO|ASPARTATE carbamoyltransferase regulatory chain|Thermococcus kodakarensis

Query: 2 CPRPGC 7
CP P C
Sbjct: 108 CPNPNC 113


>sp|PYRI_METKA|ASPARTATE carbamoyltransferase regulatory chain|Methanopyrus kandleri (strain

Query: 2 CPRPGC 7
CP P C
Sbjct: 107 CPNPNC 112


>sp|AMZA_PYRHO|ARCHAEMETZINCIN horikoshii (strain ATCC 700860

Query: 2 CPRPGC 7
CP P C
Sbjct: 148 CPNPKC 153


>sp|AMZA_PYRAB|ARCHAEMETZINCIN abyssi (strain GE5 /

Query: 2 CPRPGC 7
CP P C
Sbjct: 148 CPNPKC 153


>sp|PYRI_SACS2|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus solfataricus

Query: 2 CPRPGC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI7|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPGC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI6|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPGC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI4|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPGC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI3|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPGC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI2|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPGC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI1|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPGC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_STAMF|ASPARTATE carbamoyltransferase regulatory chain|Staphylothermus marinus

Query: 2 CPRPGC 7
CP P C
Sbjct: 116 CPNPTC 121


>sp|PYRI_HYPBU|ASPARTATE carbamoyltransferase regulatory chain|Hyperthermus butylicus

Query: 1 LCPRPGC 7
+CP P C
Sbjct: 109 MCPNPSC 115


>sp|AMZA_PYRFU|ARCHAEMETZINCIN furiosus (strain ATCC 43587

Query: 2 CPRPGC 7
CP P C
Sbjct: 148 CPNPKC 153


>sp|SYV_METKA|VALINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 CPRPGC 7
CP+ GC
Sbjct: 466 CPKCGC 471


>sp|PYRI_THEGJ|ASPARTATE carbamoyltransferase regulatory chain|Thermococcus gammatolerans

Query: 2 CPRPGC 7
CP P C
Sbjct: 107 CPNPNC 112


>sp|ATGT_METST|TRNA-GUANINE(15) transglycosylase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 6 GCGAG 10
GCGAG
Sbjct: 532 GCGAG 536


>sp|RS2_AERPE|SMALL ribosomal subunit protein uS2|Aeropyrum pernix (strain ATCC

Query: 1 LCPRPGCGA 9
+C R GC A
Sbjct: 86 MCERVGCKA 94


>sp|THSA_THEK8|CHAPERONIN subunit alpha|Thermococcus sp. (strain KS-8)

Query: 2 CPRPGCGAG 10
CP GC G
Sbjct: 536 CPPNGCMGG 544


>sp|PYRI_METLZ|ASPARTATE carbamoyltransferase regulatory chain|Methanocorpusculum labreanum

Query: 2 CPRPGC 7
CP P C
Sbjct: 112 CPNPNC 117


>sp|IF2G_METMA|TRANSLATION initiation factor 2 subunit|Methanosarcina mazei (strain ATCC

Query: 2 CPRPGC 7
CP P C
Sbjct: 81 CPEPQC 86


>sp|FDHA_METJA|F420-DEPENDENT formate dehydrogenase subunit alpha|Methanocaldococcus jannaschii

Query: 1 LCPRPGCGAG 10
+CP G G G
Sbjct: 9 ICPYCGVGCG 18


>sp|ACDB2_METMA|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanosarcina mazei

Query: 2 CPRPGCG 8
CP CG
Sbjct: 274 CPHTSCG 280


>sp|PYRI_THEPD|ASPARTATE carbamoyltransferase regulatory chain|Thermofilum pendens (strain

Query: 2 CPRPGC 7
CP P C
Sbjct: 108 CPNPNC 113


>sp|TRM1_METKA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanopyrus kandleri

Query: 2 CPRPGCGA 9
CPR G G+
Sbjct: 258 CPRCGSGS 265


>sp|GLMM_METAC|PROBABLE phosphoglucosamine mutase|Methanosarcina acetivorans (strain ATCC

Query: 6 GCGAG 10
GCGAG
Sbjct: 168 GCGAG 172


>sp|FDHA2_METMP|F420-DEPENDENT formate dehydrogenase 2 subunit|Methanococcus maripaludis (strain

Query: 1 LCPRPGCGAG 10
+CP G G G
Sbjct: 10 ICPYCGTGCG 19


>sp|GLMM_METBU|PROBABLE phosphoglucosamine mutase|Methanococcoides burtonii (strain DSM

Query: 6 GCGAG 10
GCGAG
Sbjct: 168 GCGAG 172


>sp|Y207_METJA|UNCHARACTERIZED protein MJ0207|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LCPRPGCG 8
LCP+ CG
Sbjct: 99 LCPKRICG 106


>sp|NNR_METTH|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Methanothermobacter

Query: 6 GCGAG 10
GCGAG
Sbjct: 336 GCGAG 340


>sp|GLMM_METBF|PROBABLE phosphoglucosamine mutase|Methanosarcina barkeri (strain Fusaro /

Query: 6 GCGAG 10
GCGAG
Sbjct: 168 GCGAG 172


>sp|GLMM_METMA|PROBABLE phosphoglucosamine mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 6 GCGAG 10
GCGAG
Sbjct: 168 GCGAG 172


>sp|FDHA1_METMP|F420-DEPENDENT formate dehydrogenase 1 subunit|Methanococcus maripaludis (strain

Query: 1 LCPRPGCGAG 10
+CP G G G
Sbjct: 9 ICPYCGTGCG 18


>sp|FDHA_METFO|F420-DEPENDENT formate dehydrogenase subunit alpha|Methanobacterium formicicum

Query: 1 LCPRPGCGAG 10
+CP G G G
Sbjct: 9 ICPYCGVGCG 18


>sp|ILVD_METB6|DIHYDROXY-ACID dehydratase|Methanoregula boonei (strain DSM 21154

Query: 2 CPRPGCGA 9
C PGCG+
Sbjct: 186 CAMPGCGS 193




68|Sequence|336|345|GCGAGLLPEP

>sp|SYV_AERPE|VALINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 CGAGLLPEP 10
CGA L+PEP
Sbjct: 428 CGAKLVPEP 436


>sp|RPO2C_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo2C|Halobacterium salinarum (strain ATCC

Query: 1 GCGAGLLPEP 10
G GAG++P P
Sbjct: 136 GIGAGMIPYP 145


>sp|RPO2C_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo2C|Halobacterium salinarum (strain ATCC

Query: 1 GCGAGLLPEP 10
G GAG++P P
Sbjct: 136 GIGAGMIPYP 145


>sp|DEOC_THEVO|DEOXYRIBOSE-PHOSPHATE aldolase|Thermoplasma volcanium (strain ATCC 51530

Query: 4 AGLLPEP 10
AG++PEP
Sbjct: 218 AGMIPEP 224


>sp|SYFA_SACS2|PHENYLALANINE--TRNA ligase alpha subunit|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 CGAGLL-PE 9
CGAGLL PE
Sbjct: 410 CGAGLLRPE 418


>sp|ENO_METM5|ENOLASE maripaludis (strain C5 /

Query: 1 GCGAGLLPEP 10
GC A ++P P
Sbjct: 138 GCNAYVMPAP 147


>sp|ENO_METM7|ENOLASE maripaludis (strain C7 /

Query: 1 GCGAGLLPEP 10
GC A ++P P
Sbjct: 138 GCNAYVMPAP 147


>sp|THPR_METTH|RNA 2',3'-cyclic phosphodiesterase|Methanothermobacter

Query: 3 GAGLLPEP 10
GAG+ P P
Sbjct: 79 GAGVFPNP 86


>sp|Y348_THEGJ|UPF0215 protein TGAM_0348|Thermococcus gammatolerans (strain DSM 15229

Query: 5 GLLPEP 10
GL+PEP
Sbjct: 171 GLIPEP 176


>sp|RPO2C_METJA|DNA-DIRECTED RNA polymerase subunit Rpo2C|Methanocaldococcus jannaschii (strain

Query: 1 GCGAGLLPEP 10
G GAG+ P P
Sbjct: 138 GIGAGVAPYP 147


>sp|RPO2C_METVS|DNA-DIRECTED RNA polymerase subunit Rpo2C|Methanococcus vannielii (strain ATCC

Query: 1 GCGAGLLPEP 10
G GAG+ P P
Sbjct: 134 GIGAGVAPYP 143


>sp|HEM1_NATPD|GLUTAMYL-TRNA reductase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 GAGLLPEP 10
G GL PEP
Sbjct: 412 GPGLEPEP 419


>sp|FTSZ1_ARCFU|CELL division protein FtsZ 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GCGAGLLPE 9
G GAG LP+
Sbjct: 99 GLGAGSLPQ 107


>sp|Y903_METJA|UNCHARACTERIZED protein MJ0903|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GAGLLPEP 10
G+GL+P P
Sbjct: 77 GSGLIPLP 84


>sp|RL24E_PYRIL|LARGE ribosomal subunit protein eL24|Pyrobaculum islandicum (strain DSM

Query: 2 CGAGLLP 8
CGA +LP
Sbjct: 9 CGADILP 15


>sp|KATG_METHJ|CATALASE-PEROXIDASE hungatei JF-1 (strain ATCC

Query: 3 GAGLLPEP 10
GAG +P+P
Sbjct: 350 GAGTVPDP 357


>sp|FDHA_METJA|F420-DEPENDENT formate dehydrogenase subunit alpha|Methanocaldococcus jannaschii

Query: 1 GCGAGLL 7
GCG GL+
Sbjct: 16 GCGLGLV 22


>sp|KATG_METAC|CATALASE-PEROXIDASE acetivorans (strain ATCC 35395

Query: 1 GCGAGLLPE 9
G GAG +P+
Sbjct: 353 GAGAGTIPD 361


>sp|FTSZ_METTH|CELL division protein FtsZ|Methanothermobacter thermautotrophicus

Query: 1 GCGAGLLPE 9
G GAG +PE
Sbjct: 95 GLGAGGVPE 103


>sp|RL24E_PYRAE|LARGE ribosomal subunit protein eL24|Pyrobaculum aerophilum (strain

Query: 2 CGAGLLP 8
CGA +LP
Sbjct: 9 CGADILP 15


>sp|PRIS_METLZ|DNA primase small subunit PriS|Methanocorpusculum labreanum (strain

Query: 1 GCGAGLLPE 9
G GAG PE
Sbjct: 23 GAGAGYSPE 31


>sp|TRUA_THEON|TRNA pseudouridine synthase A|Thermococcus onnurineus (strain NA1)

Query: 2 CGAGLLPE 9
CG G+L E
Sbjct: 190 CGLGILTE 197


>sp|FTSZ1_HALVD|CELL division protein FtsZ 1|Haloferax volcanii (strain ATCC 29605

Query: 1 GCGAGLLPE 9
G GAG LP+
Sbjct: 106 GRGAGSLPQ 114


>sp|CRUF_HALJT|BISANHYDROBACTERIORUBERIN hydratase|Haloarcula japonica (strain ATCC 49778

Query: 5 GLLPEP 10
GLLP+P
Sbjct: 54 GLLPDP 59


>sp|FTSZ_HALMT|CELL division protein FtsZ|Haloferax mediterranei (strain ATCC 33500

Query: 1 GCGAGLLPE 9
G GAG LP+
Sbjct: 104 GRGAGSLPQ 112


>sp|TRM1_METMJ|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanoculleus marisnigri

Query: 4 AGLLPEP 10
G+LPEP
Sbjct: 247 TGMLPEP 253




69|Sequence|341|350|LLPEPDQRKV

>sp|GLMM_METJA|PHOSPHOGLUCOSAMINE mutase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LPEPDQRKV 10
LPEPD++ +
Sbjct: 201 LPEPDEKNL 209


>sp|DNLI_METAR|DNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 LLPEPDQRKV 10
+ PE DQRK+
Sbjct: 49 IFPEWDQRKI 58


>sp|DP2S_ARCFU|DNA polymerase II small subunit|Archaeoglobus fulgidus (strain ATCC

Query: 1 LLPEPDQRKV 10
L P P++RKV
Sbjct: 74 LTPRPEERKV 83


>sp|DMSA_HALSA|PUTATIVE dimethyl sulfoxide reductase catalytic|Halobacterium salinarum

Query: 3 PEPDQR 8
P+PDQR
Sbjct: 126 PQPDQR 131


>sp|HIS8_METBF|HISTIDINOL-PHOSPHATE aminotransferase|Methanosarcina barkeri (strain Fusaro /

Query: 1 LLPEPDQRKV 10
LLPE D RKV
Sbjct: 177 LLPEKDLRKV 186


>sp|HIS8_METMA|HISTIDINOL-PHOSPHATE aminotransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LLPEPDQRKV 10
LLPE D RK+
Sbjct: 179 LLPEADLRKI 188


>sp|HIS8_METAC|HISTIDINOL-PHOSPHATE aminotransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 LLPEPDQRKV 10
LLPE D RK+
Sbjct: 178 LLPEADLRKI 187


>sp|GFO6_HALMA|D-XYLOSE 1-dehydrogenase [NADP(+)]|Haloarcula marismortui (strain ATCC 43049

Query: 1 LLPEPDQRKV 10
L+P+PDQ ++
Sbjct: 185 LVPDPDQWRL 194


>sp|MCRA_METBF|METHYL-COENZYME M reductase subunit alpha|Methanosarcina barkeri (strain Fusaro /

Query: 1 LLPEPDQRKV 10
L PE D RKV
Sbjct: 41 LGPEQDPRKV 50


>sp|SYI_THEVO|ISOLEUCINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 LPEPDQRKV 10
PEPD K+
Sbjct: 777 FPEPDTSKI 785


>sp|RL3_HALWD|LARGE ribosomal subunit protein uL3|Haloquadratum walsbyi (strain DSM

Query: 2 LPEPDQR 8
LP PDQR
Sbjct: 302 LPGPDQR 308


>sp|DNLI_CALMQ|DNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 LPEPDQRKV 10
LP PD++KV
Sbjct: 368 LPLPDRKKV 376


>sp|IF2P_METMP|PROBABLE translation initiation factor IF-2|Methanococcus maripaludis

Query: 2 LPEPDQRKV 10
+PEP+ RK+
Sbjct: 556 VPEPEARKL 564


>sp|IF2P_METM5|PROBABLE translation initiation factor IF-2|Methanococcus maripaludis

Query: 2 LPEPDQRKV 10
+PEP+ RK+
Sbjct: 556 VPEPEARKL 564


>sp|Y1047_ARCFU|UNCHARACTERIZED protein AF_1047|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PEPDQRKV 10
PEPD+ K+
Sbjct: 105 PEPDEEKL 112


>sp|IF2P_METM6|PROBABLE translation initiation factor IF-2|Methanococcus maripaludis

Query: 2 LPEPDQRKV 10
+PEP+ RK+
Sbjct: 556 VPEPEARKL 564


>sp|IF2P_METM7|PROBABLE translation initiation factor IF-2|Methanococcus maripaludis

Query: 2 LPEPDQRKV 10
+PEP+ RK+
Sbjct: 556 VPEPEARKL 564


>sp|SYC_ARCFU|CYSTEINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 EPDQRK 9
EPD+RK
Sbjct: 168 EPDERK 173


>sp|FEN_PYRCJ|FLAP endonuclease 1|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 LPEPDQRKV 10
L PD+RK+
Sbjct: 300 LSTPDERKI 308




70|Sequence|346|355|DQRKVTCEGG

>sp|TDXH_METJA|PEROXIREDOXIN jannaschii (strain ATCC 43067

Query: 2 QRKVTCEGG 10
QRK CE G
Sbjct: 194 QRKEACEKG 202


>sp|FENR_PICTO|FERREDOXIN--NADP reductase|Picrophilus torridus (strain ATCC 700027

Query: 3 RKVTCEG 9
RK+ CEG
Sbjct: 123 RKIGCEG 129


>sp|FLPA_METVS|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus vannielii (strain

Query: 1 DQRKVTCEGG 10
+Q+K+ EGG
Sbjct: 195 EQKKILIEGG 204


>sp|FLPA_METMP|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 1 DQRKVTCEGG 10
+Q+K+ EGG
Sbjct: 195 EQKKILIEGG 204


>sp|FLPA_METM7|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 1 DQRKVTCEGG 10
+Q+K+ EGG
Sbjct: 195 EQKKILIEGG 204


>sp|FLPA_METM6|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 1 DQRKVTCEGG 10
+Q+K+ EGG
Sbjct: 195 EQKKILIEGG 204


>sp|FLPA_METM5|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 1 DQRKVTCEGG 10
+Q+K+ EGG
Sbjct: 195 EQKKILIEGG 204


>sp|PYRG_METMP|CTP synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 DQRKVTCEGG 10
+QR+VT +GG
Sbjct: 422 EQREVTEKGG 431


>sp|DADD_METBU|5'-DEOXYADENOSINE deaminase|Methanococcoides burtonii (strain DSM 6242

Query: 1 DQRKVTC 7
D+RKV C
Sbjct: 403 DERKVLC 409


>sp|SFSA_ARCFU|SUGAR fermentation stimulation protein homolog|Archaeoglobus fulgidus

Query: 5 VTCEGG 10
V+CEGG
Sbjct: 69 VSCEGG 74


>sp|MCRW_METTH|METHYL-COENZYME M reductase II operon|Methanothermobacter thermautotrophicus

Query: 1 DQRKVTCEG 9
D+RK+T G
Sbjct: 64 DRRKITVRG 72


>sp|DPO42_METMA|DNA polymerase IV 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 QRKVTCEGG 10
Q+K+TC G
Sbjct: 149 QQKITCSVG 157


>sp|SYA_IGNH4|ALANINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 RKVTCEGG 10
R+V C+GG
Sbjct: 858 REVGCKGG 865


>sp|SYFA_PYRAR|PHENYLALANINE--TRNA ligase alpha subunit|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 RKVTCEGG 10
+ TC+GG
Sbjct: 79 KSATCDGG 86




71|Sequence|351|360|TCEGGNGLGC

>sp|CBID_SULTO|COBALT-PRECORRIN-5B C(1)-methyltransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 EGGNGLG 9
EGGNG+G
Sbjct: 94 EGGNGIG 100


>sp|RL10_NATPD|LARGE ribosomal subunit protein uL10|Natronomonas pharaonis (strain

Query: 3 EGGNGLG 9
EGG+GLG
Sbjct: 72 EGGDGLG 78


>sp|PSTA_METJA|PROBABLE phosphate transport system permease|Methanocaldococcus jannaschii

Query: 3 EGGNGLGC 10
EGG LGC
Sbjct: 169 EGGYALGC 176


>sp|XYLS_SACS2|ALPHA-XYLOSIDASE solfataricus (strain ATCC 35092

Query: 4 GGNGLG 9
GGNGLG
Sbjct: 122 GGNGLG 127


>sp|CBID_META3|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 GGNGLG 9
GGNG+G
Sbjct: 118 GGNGVG 123


>sp|CBID_METVS|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanococcus vannielii (strain ATCC 35089

Query: 4 GGNGLG 9
GGNG+G
Sbjct: 105 GGNGVG 110


>sp|PURL_ARCFU|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 GGNGLGC 10
GG GL C
Sbjct: 303 GGGGLSC 309


>sp|THIL_PYRAB|THIAMINE-MONOPHOSPHATE kinase|Pyrococcus abyssi (strain GE5 /

Query: 3 EGGNGL 8
EGGNG+
Sbjct: 278 EGGNGV 283


>sp|ARGD_METJA|ACETYLORNITHINE aminotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 TCEGGNGLGC 10
T GGN L C
Sbjct: 280 TTFGGNPLAC 289




72|Sequence|356|365|NGLGCGFAFC

>sp|Y695_METJA|UNCHARACTERIZED protein MJ0695|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 NGLGCGFAF 9
NG+ CGF+F
Sbjct: 47 NGIECGFSF 55


>sp|Y952_ARCFU|UNCHARACTERIZED protein AF_0952|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 NGLGCGFA 8
NGLG GFA
Sbjct: 46 NGLGGGFA 53


>sp|CAS6_HALMT|CRISPR-ASSOCIATED endoribonuclease Cas6|Haloferax mediterranei (strain ATCC 33500

Query: 1 NGLGCGFA 8
NGLG GF+
Sbjct: 243 NGLGFGFS 250


>sp|G1PDH_HALWD|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Haloquadratum walsbyi (strain DSM 16790

Query: 3 LGCGF 7
LGCGF
Sbjct: 107 LGCGF 111


>sp|NASA_HALMT|ASSIMILATORY nitrate reductase|Haloferax mediterranei (strain ATCC 33500

Query: 1 NGLGCG 6
NGL CG
Sbjct: 55 NGLACG 60


>sp|ARSM_METAC|ARSENITE methyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 GLGCG 6
GLGCG
Sbjct: 59 GLGCG 63


>sp|ARSM_HALSA|ARSENITE methyltransferase|Halobacterium salinarum (strain ATCC 700922

Query: 2 GLGCG 6
GLGCG
Sbjct: 189 GLGCG 193


>sp|CBIH_METTH|PROBABLE cobalt-factor III C(17)-methyltransferase|Methanothermobacter

Query: 2 GLGCGFAFC 10
G C F +C
Sbjct: 273 GQNCAFCYC 281


>sp|Y096_ARCFU|UNCHARACTERIZED protein AF_0096|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 CGFAFC 10
CG+ +C
Sbjct: 84 CGYTYC 89


>sp|Y1319_METJA|UNCHARACTERIZED sodium-dependent transporter MJ1319|Methanocaldococcus jannaschii

Query: 3 LGCGFAF 9
L CGF+F
Sbjct: 264 LNCGFSF 270




73|Sequence|361|370|GFAFCRECKE

>sp|MSMS_METAC|METHYL sulfide methyltransferase-associated sensor|Methanosarcina

Query: 4 FCRECKE 10
FC EC+E
Sbjct: 396 FCEECRE 402


>sp|DPOL_THEG8|DNA polymerase|Thermococcus sp. (strain GE8)

Query: 4 FCRECKE 10
+CREC E
Sbjct: 1040 YCRECAE 1046


>sp|DPOL_DESST|DNA polymerase|Desulfurococcus sp. (strain Tok)

Query: 4 FCRECKE 10
+CREC E
Sbjct: 505 YCRECAE 511


>sp|DPOL2_AERPE|DNA polymerase 2|Aeropyrum pernix (strain ATCC 700893

Query: 4 FCRECKE 10
+CREC E
Sbjct: 547 YCRECAE 553


>sp|AMZA_ARCFU|ARCHAEMETZINCIN fulgidus (strain ATCC 49558

Query: 3 AFCREC 8
+FCREC
Sbjct: 149 SFCREC 154


>sp|SYG_METTP|GLYCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 5 CRECKE 10
C+ECKE
Sbjct: 88 CKECKE 93


>sp|TF2B_METST|TRANSCRIPTION initiation factor IIB|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 FAFCRECK 9
+A CR CK
Sbjct: 174 YAACRRCK 181


>sp|DPOL_THES9|DNA polymerase|Thermococcus sp. (strain 9oN-7)

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 505 YCKECAE 511


>sp|DPOL_THEKO|DNA polymerase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 1402 YCKECAE 1408


>sp|DPOL_THEHY|DNA polymerase|Thermococcus hydrothermalis

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 1009 YCKECAE 1015


>sp|DPOL_THEGO|DNA polymerase|Thermococcus gorgonarius

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 505 YCKECAE 511


>sp|DPOL_THEFM|DNA polymerase|Thermococcus fumicolans

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 865 YCKECAE 871


>sp|DPOL_PYRWO|DNA polymerase|Pyrococcus woesei

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 506 YCKECAE 512


>sp|DPOL_PYRSD|DNA polymerase|Pyrococcus sp. (strain GB-D)

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 1043 YCKECAE 1049


>sp|DPOL_PYRHO|DNA polymerase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 966 YCKECAE 972


>sp|DPOL_PYRGL|DNA polymerase|Pyrococcus glycovorans

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 506 YCKECAE 512


>sp|DPOL_PYRFU|DNA polymerase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 506 YCKECAE 512


>sp|DPOL_PYRAY|DNA polymerase 1|Pyrococcus abyssi

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 506 YCKECAE 512


>sp|DPOL_PYRAB|DNA polymerase 1|Pyrococcus abyssi (strain GE5 /

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 506 YCKECAE 512


>sp|HCP_METMA|HYDROXYLAMINE reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 FCRECKE 10
FC +C+E
Sbjct: 2 FCNQCQE 8


>sp|RAD50_METJA|DNA double-strand break repair Rad50|Methanocaldococcus jannaschii

Query: 5 CRECKE 10
C ECKE
Sbjct: 387 CEECKE 392


>sp|Y934_METJA|UNCHARACTERIZED polyferredoxin-like protein MJ0934|Methanocaldococcus jannaschii

Query: 4 FCRECKE 10
FCREC+E
Sbjct: 190 FCRECEE 196


>sp|FDHB1_METMP|F420-DEPENDENT formate dehydrogenase 1 subunit|Methanococcus maripaludis (strain

Query: 4 FCREC 8
FCREC
Sbjct: 300 FCREC 304


>sp|SYV_METKA|VALINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 4 FCRECKE 10
+C+EC E
Sbjct: 437 YCKECGE 443


>sp|TF2B_METJA|TRANSCRIPTION initiation factor IIB|Methanocaldococcus jannaschii (strain ATCC

Query: 2 FAFCRECK 9
+A CR C+
Sbjct: 536 YAACRRCR 543


>sp|AMZA_METKA|ARCHAEMETZINCIN kandleri (strain AV19 /

Query: 4 FCRECKE 10
FCR C E
Sbjct: 159 FCRRCTE 165


>sp|MOAA_METTH|PROBABLE GTP 3',8-cyclase|Methanothermobacter thermautotrophicus (strain

Query: 2 FAFCRE 7
F FCRE
Sbjct: 171 FEFCRE 176


>sp|SYW_PYRCJ|TRYPTOPHAN--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 GFAFCRECKE 10
G C ECK+
Sbjct: 331 GALLCGECKQ 340


>sp|DP2L_METTP|DNA polymerase II large subunit|Methanothrix thermoacetophila (strain

Query: 1 GFAFCREC 8
GFAF EC
Sbjct: 628 GFAFRCEC 635


>sp|RPO3_SULTO|DNA-DIRECTED RNA polymerase subunit Rpo3|Sulfurisphaera tokodaii (strain DSM

Query: 5 CRECKE 10
C ECKE
Sbjct: 82 CAECKE 87


>sp|RPO3_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo3|Sulfolobus acidocaldarius (strain

Query: 5 CRECKE 10
C ECKE
Sbjct: 82 CAECKE 87


>sp|Y1016_METJA|UNCHARACTERIZED protein MJ1016|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GFAFCRECK 9
G + CR CK
Sbjct: 109 GSSICRICK 117


>sp|SYW_AERPE|TRYPTOPHAN--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 GFAFCRECKE 10
G C ECK+
Sbjct: 330 GKILCGECKQ 339


>sp|TFE_METMP|TRANSCRIPTION factor E|Methanococcus maripaludis (strain DSM 14266

Query: 2 FAFCRECK 9
F FC +C+
Sbjct: 114 FFFCSDCE 121


>sp|TFE_METM7|TRANSCRIPTION factor E|Methanococcus maripaludis (strain C7 /

Query: 2 FAFCRECK 9
F FC +C+
Sbjct: 114 FFFCSDCE 121


>sp|TFE_METM5|TRANSCRIPTION factor E|Methanococcus maripaludis (strain C5 /

Query: 2 FAFCRECK 9
F FC +C+
Sbjct: 114 FFFCSDCE 121


>sp|AMZA_PYRAE|ARCHAEMETZINCIN aerophilum (strain ATCC 51768

Query: 4 FCRECKE 10
FC +C+E
Sbjct: 143 FCPKCRE 149


>sp|TF2B_METTL|TRANSCRIPTION initiation factor IIB|Methanothermococcus thermolithotrophicus

Query: 5 CRECK 9
CR CK
Sbjct: 205 CRRCK 209




74|Sequence|366|375|RECKEAYHEG

>sp|Y963_METJA|UNCHARACTERIZED protein MJ0963|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 KEAYHEG 10
KE YHEG
Sbjct: 141 KELYHEG 147


>sp|ENO_META3|ENOLASE aeolicus (strain ATCC BAA-1280

Query: 1 RECKEAYH 8
R C E YH
Sbjct: 181 RMCAETYH 188


>sp|CDC6_THEKO|ORC1-TYPE DNA replication protein|Thermococcus kodakarensis (strain ATCC

Query: 1 RECKEAYHEG 10
+ KEA++EG
Sbjct: 228 QRAKEAFYEG 237


>sp|RL44E_ARCFU|LARGE ribosomal subunit protein eL42|Archaeoglobus fulgidus (strain

Query: 2 ECKEAYHE 9
ECK+A+H
Sbjct: 73 ECKKAHHR 80




75|Sequence|371|380|AYHEGECSAV

>sp|DNLI_ARCFU|DNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 YHEGEC 7
YH+GEC
Sbjct: 341 YHDGEC 346


>sp|QUEC1_SULTO|7-CYANO-7-DEAZAGUANINE synthase 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 YHEGECS 8
YH G+CS
Sbjct: 172 YHCGQCS 178


>sp|DPOL_THES9|DNA polymerase|Thermococcus sp. (strain 9oN-7)

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_THEKO|DNA polymerase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_THEHY|DNA polymerase|Thermococcus hydrothermalis

Query: 2 YHEGE 6
YHEGE
Sbjct: 113 YHEGE 117


>sp|DPOL_THEGO|DNA polymerase|Thermococcus gorgonarius

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_THEG8|DNA polymerase|Thermococcus sp. (strain GE8)

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_THEFM|DNA polymerase|Thermococcus fumicolans

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_PYRWO|DNA polymerase|Pyrococcus woesei

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_PYRSD|DNA polymerase|Pyrococcus sp. (strain GB-D)

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_PYRHO|DNA polymerase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_PYRGL|DNA polymerase|Pyrococcus glycovorans

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_PYRFU|DNA polymerase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_PYRAY|DNA polymerase 1|Pyrococcus abyssi

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_PYRAB|DNA polymerase 1|Pyrococcus abyssi (strain GE5 /

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|DPOL_DESST|DNA polymerase|Desulfurococcus sp. (strain Tok)

Query: 2 YHEGE 6
YHEGE
Sbjct: 146 YHEGE 150


>sp|TSR3_METBF|16S rRNA aminocarboxypropyltransferase|Methanosarcina barkeri (strain

Query: 2 YHEGEC 7
YH G+C
Sbjct: 14 YHAGQC 19


>sp|TTH_ACIAM|TETRATHIONATE hydrolase|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 3 HEGECSAV 10
H G C AV
Sbjct: 227 HRGRCGAV 234


>sp|DNLI_METJA|DNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 EGECSAV 10
EGEC A+
Sbjct: 297 EGECVAI 303


>sp|TSR3_METAC|16S rRNA aminocarboxypropyltransferase|Methanosarcina acetivorans

Query: 2 YHEGEC 7
YH G+C
Sbjct: 15 YHAGQC 20


>sp|TSR3_METMA|16S rRNA aminocarboxypropyltransferase|Methanosarcina mazei (strain

Query: 2 YHEGEC 7
YH G+C
Sbjct: 14 YHAGQC 19


>sp|UVRC_METMA|UVRABC system protein C|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 YHEGECSA 9
YH G CS
Sbjct: 163 YHIGACSG 170


>sp|UVRC_METAC|UVRABC system protein C|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 YHEGECSA 9
YH G CS
Sbjct: 157 YHIGACSG 164


>sp|PYRC_SULAC|DIHYDROOROTASE acidocaldarius (strain ATCC 33909

Query: 1 AYHEGECSAV 10
AY+EGE +
Sbjct: 7 AYYEGEIKEI 16


>sp|QUED_HALS3|PROBABLE 6-carboxy-5,6,7,8-tetrahydropterin synthase|Halobacterium

Query: 2 YHEGECS 8
+H+G+CS
Sbjct: 37 HHDGKCS 43




76|Sequence|376|385|ECSAVFEASG

>sp|RNZ_METMA|RIBONUCLEASE Z|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 CSAVFEAS 9
C AV EAS
Sbjct: 212 CEAVLEAS 219


>sp|RNZ_METAC|RIBONUCLEASE Z|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 CSAVFEAS 9
C AV EAS
Sbjct: 212 CEAVLEAS 219


>sp|HIS7_METHJ|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 ECSAVFEASG 10
+C A+F+A G
Sbjct: 161 KCEALFKAFG 170




77|Sequence|381|390|FEASGTTTQA

***** No hits found ******


78|Sequence|386|395|TTTQAYRVDE

>sp|KAE1B_METTH|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 TTTQAYRVDE 10
T Q YR DE
Sbjct: 311 TVVQRYRTDE 320


>sp|KAE1_METKA|TRNA N6-adenosine threonylcarbamoyltransferase|Methanopyrus kandleri

Query: 4 QAYRVDE 10
Q YRVDE
Sbjct: 323 QRYRVDE 329


>sp|CBIA_THEAC|COBYRINATE a,c-diamide synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 QAYRVDE 10
QAY +DE
Sbjct: 194 QAYEIDE 200




79|Sequence|391|400|YRVDERAAEQ

>sp|LHRC2_THEBM|ATP-DEPENDENT helicase Lhr-Core protein 2|Thermococcus barophilus (strain DSM

Query: 1 YRVDERAAE 9
YR+DE+AA+
Sbjct: 616 YRIDEKAAK 624


>sp|TRUA_NATPD|TRNA pseudouridine synthase A|Natronomonas pharaonis (strain ATCC 35678

Query: 1 YRVDERAAEQ 10
+ VD+RAAE
Sbjct: 232 FTVDDRAAES 241




80|Sequence|396|405|RAAEQARWEA

>sp|GGGPS_METPE|GERANYLGERANYLGLYCERYL phosphate synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 RAAEQARW 8
+AAE RW
Sbjct: 195 KAAEMGRW 202




81|Sequence|401|410|ARWEAASKET

>sp|T1SH_METJA|TYPE I restriction enzyme MjaIX|Methanocaldococcus jannaschii (strain

Query: 2 RWEAASKET 10
RWE KET
Sbjct: 8 RWETEFKET 16


>sp|DNLI1_HALWD|DNA ligase 1|Haloquadratum walsbyi (strain DSM 16790

Query: 1 ARWEAA 6
ARWEAA
Sbjct: 55 ARWEAA 60




82|Sequence|406|415|ASKETIKKTT

>sp|RFCS_METAC|REPLICATION factor C small subunit|Methanosarcina acetivorans (strain ATCC

Query: 2 SKETIKKTT 10
S+ETI +TT
Sbjct: 226 SRETIYRTT 234




83|Sequence|411|420|IKKTTKPCPR

>sp|SYE_METS3|GLUTAMATE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 IKKTTKPCP 9
+K KPCP
Sbjct: 201 LKDNCKPCP 209


>sp|SURE_AERPE|5'-NUCLEOTIDASE SurE|Aeropyrum pernix (strain ATCC 700893

Query: 3 KTTKPCPR 10
K T+PC R
Sbjct: 176 KVTRPCRR 183


>sp|TF2B5_HALSA|TRANSCRIPTION initiation factor IIB 5|Halobacterium salinarum (strain ATCC

Query: 2 KKTTKPCP 9
+ TT+PCP
Sbjct: 17 RGTTEPCP 24


>sp|Y996_METJA|METALLOPROTEASE MJ0996|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 6 KPCPR 10
KPCP+
Sbjct: 218 KPCPK 222


>sp|GCH32_HALSA|GTP cyclohydrolase III 2|Halobacterium salinarum (strain ATCC 700922

Query: 4 TTKPCPR 10
TT+P PR
Sbjct: 13 TTEPAPR 19


>sp|Y115_METJA|UNCHARACTERIZED protein MJ0115|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 KTTKPCP 9
K TKPCP
Sbjct: 74 KITKPCP 80


>sp|HUTU_THEAC|PROBABLE urocanate hydratase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 KTTKPCPR 10
KTTK PR
Sbjct: 89 KTTKDAPR 96


>sp|Y880_METJA|UNCHARACTERIZED protein MJ0880|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 IKKTTKP 7
IKK TKP
Sbjct: 33 IKKITKP 39


>sp|HUTU_THEVO|PROBABLE urocanate hydratase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 KTTKPCPR 10
KTTK PR
Sbjct: 89 KTTKDSPR 96


>sp|Y1398_METJA|UNCHARACTERIZED HTH-type transcriptional regulator MJ1398|Methanocaldococcus

Query: 1 IKKTTKPCP 9
+KKT+ P P
Sbjct: 190 VKKTSNPLP 198


>sp|RS5_THEAC|SMALL ribosomal subunit protein uS5|Thermoplasma acidophilum (strain ATCC

Query: 1 IKKTTKPCPR 10
++ T KP PR
Sbjct: 137 VRITLKPAPR 146


>sp|Y1314_ARCFU|UNCHARACTERIZED protein AF_1314|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 IKKTTKPCP 9
+ K KPCP
Sbjct: 144 VTKIKKPCP 152


>sp|SYE_SULTO|GLUTAMATE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 IKKTTKPCP 9
++ +KPCP
Sbjct: 205 MRDASKPCP 213


>sp|RS5_THEVO|SMALL ribosomal subunit protein uS5|Thermoplasma volcanium (strain ATCC

Query: 1 IKKTTKPCPR 10
++ T KP PR
Sbjct: 137 VRITLKPAPR 146


>sp|NIFH_METVO|NITROGENASE iron protein|Methanococcus voltae

Query: 2 KKTTKPCP 9
KKTT P P
Sbjct: 249 KKTTIPTP 256


>sp|RS27A_HYPBU|SMALL ribosomal subunit protein eS31|Hyperthermus butylicus (strain DSM

Query: 1 IKKTTKPCPR 10
IK+ K CPR
Sbjct: 22 IKRKNKICPR 31


>sp|RS5_METKA|SMALL ribosomal subunit protein uS5|Methanopyrus kandleri (strain AV19 /

Query: 1 IKKTTKPCPR 10
++ T KP PR
Sbjct: 142 VRITLKPAPR 151




84|Sequence|416|425|KPCPRCHVPV

>sp|RGYR1_AERPE|REVERSE gyrase 1|Aeropyrum pernix (strain ATCC 700893

Query: 2 PCPRC 6
PCPRC
Sbjct: 33 PCPRC 37


Query: 3 CPRC 6
CPRC
Sbjct: 761 CPRC 764


>sp|SYL_METJA|LEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 CPRCHVPV 10
CPRC PV
Sbjct: 182 CPRCDNPV 189


>sp|SYM_THEAC|METHIONINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 CPRCHVP 9
CP CH P
Sbjct: 145 CPYCHYP 151


>sp|DP2L_METAR|DNA polymerase II large subunit|Methanocella arvoryzae (strain DSM

Query: 3 CPRCHVP 9
CP+CH P
Sbjct: 678 CPKCHKP 684


Query: 3 CPRC 6
CPRC
Sbjct: 1068 CPRC 1071


>sp|Y1638_METJA|UNCHARACTERIZED protein MJ1638|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PCPRCH 7
PC RCH
Sbjct: 139 PCGRCH 144


>sp|TF2B5_HALSA|TRANSCRIPTION initiation factor IIB 5|Halobacterium salinarum (strain ATCC

Query: 1 KPCPRCHVPV 10
+PCP C PV
Sbjct: 21 EPCPECGGPV 30


>sp|SYL_METVS|LEUCINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 3 CPRCHVPV 10
CP+C PV
Sbjct: 189 CPKCENPV 196


>sp|SYL_METMP|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 3 CPRCHVPV 10
CP+C PV
Sbjct: 192 CPKCENPV 199


>sp|SYL_METM7|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 3 CPRCHVPV 10
CP+C PV
Sbjct: 192 CPKCENPV 199


>sp|SYL_METM5|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 3 CPRCHVPV 10
CP+C PV
Sbjct: 192 CPKCENPV 199


>sp|GMHB_THEVO|PROBABLE D-glycero-D-manno-heptose-1,7-bisphosphate

Query: 1 KPCPRCHVP 9
K CP CH P
Sbjct: 14 KDCPYCHNP 22


>sp|SYL_METTH|LEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 KPCPRCHVPV 10
K CP C PV
Sbjct: 173 KYCPECENPV 182


>sp|RGYR2_SULTO|REVERSE gyrase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 CPRCH 7
CP+CH
Sbjct: 709 CPKCH 713


>sp|Y2204_ARCFU|UNCHARACTERIZED protein AF_2204|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KPCPRCHVP 9
+ CP C++P
Sbjct: 66 RNCPYCYIP 74


>sp|AROC_THEAC|CHORISMATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 KPCPRCHVP 9
KP P H+P
Sbjct: 294 KPTPSIHIP 302


>sp|TFE_IGNH4|TRANSCRIPTION factor E|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 CPRCHVPV 10
CPRC P+
Sbjct: 136 CPRCGEPL 143


>sp|RGYR2_AERPE|REVERSE gyrase 2|Aeropyrum pernix (strain ATCC 700893

Query: 3 CPRCHVP 9
CPRC P
Sbjct: 719 CPRCGSP 725


>sp|SYV_ARCFU|VALINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KPCPRC 6
+PCP+C
Sbjct: 430 EPCPKC 435


Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 173 CPRCETTI 180


>sp|Y2663_HALWD|UPF0212 protein HQ_2663A|Haloquadratum walsbyi (strain DSM 16790

Query: 2 PCPRCHVP 9
PCP C P
Sbjct: 51 PCPACGEP 58


>sp|DNAJ_PICTO|CHAPERONE protein DnaJ|Picrophilus torridus (strain ATCC 700027

Query: 1 KPCPRCH 7
KPC CH
Sbjct: 199 KPCTVCH 205


Query: 3 CPRCH 7
CP CH
Sbjct: 161 CPTCH 165


>sp|DP2L_METBF|DNA polymerase II large subunit|Methanosarcina barkeri (strain Fusaro /

Query: 3 CPRCHVPV 10
CPRC + V
Sbjct: 673 CPRCKIEV 680


>sp|TF2B2_THEVO|TRANSCRIPTION initiation factor IIB 2|Thermoplasma volcanium (strain ATCC 51530

Query: 1 KPCPRCH 7
K CP CH
Sbjct: 15 KRCPECH 21


>sp|Y1198_METJA|PROTEIN MJ1198|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PCPRC 6
PCP+C
Sbjct: 56 PCPKC 60


>sp|DP2L_METMA|DNA polymerase II large subunit|Methanosarcina mazei (strain ATCC

Query: 3 CPRCHVPV 10
CPRC + V
Sbjct: 679 CPRCKIDV 686


>sp|SYV_AERPE|VALINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 3 CPRCHVP 9
CPRC P
Sbjct: 452 CPRCGAP 458


Query: 3 CPRC 6
CPRC
Sbjct: 186 CPRC 189


>sp|CARB_METS3|CARBAMOYL phosphate synthase large chain|Methanobrevibacter smithii (strain

Query: 1 KPCPRCH 7
+P P+CH
Sbjct: 139 EPIPKCH 145


>sp|DP2L_METAC|DNA polymerase II large subunit|Methanosarcina acetivorans (strain ATCC

Query: 3 CPRCHVPV 10
CPRC + V
Sbjct: 672 CPRCKIDV 679


>sp|TFE_PYRAE|TRANSCRIPTION factor E|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 CPRCHV 8
CP CH+
Sbjct: 122 CPNCHM 127


>sp|TRM1_SULTO|TRNA (guanine(26)-N(2))-dimethyltransferase|Sulfurisphaera tokodaii

Query: 1 KPCPRCHV 8
K CPRC +
Sbjct: 259 KICPRCGI 266


>sp|TF2B_METS3|TRANSCRIPTION initiation factor IIB|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 CPRCHVP 9
C RC+VP
Sbjct: 176 CRRCNVP 182


>sp|SYI_METTP|ISOLEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 182 CPRCQTAI 189


>sp|SYI_HALWD|ISOLEUCINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 181 CPRCQTAI 188


>sp|DP2L_METBU|DNA polymerase II large subunit|Methanococcoides burtonii (strain DSM

Query: 3 CPRCHVPV 10
CPRC + V
Sbjct: 678 CPRCGISV 685


>sp|SYL2_SULTO|LEUCINE--TRNA ligase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 CPRCHVPV 10
CP H+PV
Sbjct: 177 CPVHHIPV 184


>sp|SYL2_SULAC|LEUCINE--TRNA ligase 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 CPRCHVPV 10
CP H+PV
Sbjct: 176 CPVHHIPV 183


>sp|SYL2_SACS2|LEUCINE--TRNA ligase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 CPRCHVPV 10
CP H+PV
Sbjct: 177 CPVHHIPV 184


>sp|TFE_PYRNV|TRANSCRIPTION factor E|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 CPRCHV 8
CP CH+
Sbjct: 122 CPTCHM 127


>sp|TFE_PYRIL|TRANSCRIPTION factor E|Pyrobaculum islandicum (strain DSM 4184

Query: 3 CPRCHV 8
CP CH+
Sbjct: 122 CPTCHM 127


>sp|SYV_METMP|VALINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 173 CPRCETAI 180


>sp|SYV_HALSA|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 175 CPRCETAI 182


>sp|SYV_HALS3|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 175 CPRCETAI 182


>sp|SYI_NATPD|ISOLEUCINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 184 CPRCETAI 191


>sp|SYI_METMJ|ISOLEUCINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 181 CPRCETAI 188


>sp|SYI_METMA|ISOLEUCINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 182 CPRCETAI 189


>sp|SYI_METHJ|ISOLEUCINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 181 CPRCETAI 188


>sp|SYI_METBU|ISOLEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 182 CPRCETAI 189


>sp|SYI_METBF|ISOLEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 182 CPRCETAI 189


>sp|SYI_METB6|ISOLEUCINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 181 CPRCETAI 188


>sp|SYI_METAR|ISOLEUCINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 182 CPRCETAI 189


>sp|SYI_METAC|ISOLEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 182 CPRCETAI 189


>sp|SYI_HALSA|ISOLEUCINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 184 CPRCETAI 191


>sp|SYV_METJA|VALINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 173 CPRCQTAI 180


>sp|FOR_THELN|TUNGSTEN-CONTAINING formaldehyde ferredoxin oxidoreductase|Thermococcus litoralis

Query: 3 CPRCHVP 9
CP C++P
Sbjct: 284 CPYCNMP 290


>sp|TF2B_METJA|TRANSCRIPTION initiation factor IIB|Methanocaldococcus jannaschii (strain ATCC

Query: 3 CPRCHVP 9
C RC VP
Sbjct: 539 CRRCRVP 545


>sp|SYV_NATPD|VALINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 175 CPRCETAI 182


>sp|SUI1_METJA|PROTEIN translation factor SUI1 homolog|Methanocaldococcus jannaschii

Query: 3 CPRCHVP 9
CPRC +P
Sbjct: 6 CPRCGLP 12


>sp|SYV_METBF|VALINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 177 CPRCETAI 184


>sp|PYLS_METBU|PYRROLYSINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 KPCPRC 6
KPC RC
Sbjct: 67 KPCKRC 72


>sp|IDH_CALNO|ISOCITRATE dehydrogenase [NADP]|Caldococcus noboribetus

Query: 1 KPCPRCH 7
+P P CH
Sbjct: 140 QPTPHCH 146


>sp|RF1_THESM|PEPTIDE chain release factor subunit|Thermococcus sibiricus (strain DSM

Query: 1 KPCPRCH 7
K CP+C+
Sbjct: 354 KACPKCN 360


>sp|GMHB_THEAC|PROBABLE D-glycero-D-manno-heptose-1,7-bisphosphate

Query: 1 KPCPRCH 7
+ CP CH
Sbjct: 28 RDCPYCH 34


>sp|DNAJ_THEVO|CHAPERONE protein DnaJ|Thermoplasma volcanium (strain ATCC 51530

Query: 3 CPRCH 7
CP CH
Sbjct: 168 CPTCH 172


Query: 3 CPRCH 7
CPRC+
Sbjct: 208 CPRCN 212


>sp|TF2B_METST|TRANSCRIPTION initiation factor IIB|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 CPRCHVP 9
C RC VP
Sbjct: 177 CRRCKVP 183


>sp|SYV_METMA|VALINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 177 CPRCETAI 184


>sp|DNAJ_METTH|CHAPERONE protein DnaJ|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 KPCPRCH 7
K CP CH
Sbjct: 146 KKCPVCH 152


>sp|TF2B_META3|TRANSCRIPTION initiation factor IIB|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 CPRCHVP 9
C RC VP
Sbjct: 200 CRRCKVP 206


>sp|SYV_METAC|VALINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 177 CPRCETAI 184


>sp|TFE_METST|TRANSCRIPTION factor E|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 CPRCH 7
CPRC+
Sbjct: 149 CPRCN 153


>sp|SYV_NANEQ|VALINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 3 CPRCH 7
CPRC+
Sbjct: 425 CPRCN 429


>sp|DNAJ_THEAC|CHAPERONE protein DnaJ|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 CPRCH 7
CPRC+
Sbjct: 208 CPRCN 212


>sp|HDRB1_METAC|FERREDOXIN:COB-COM heterodisulfide reductase subunit B|Methanosarcina acetivorans

Query: 3 CPRCHV 8
CP CH+
Sbjct: 250 CPNCHI 255


>sp|DP2L_PYRFU|DNA polymerase II large subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 3 CPRCHV 8
CP+C+V
Sbjct: 748 CPKCNV 753


>sp|DNLJ_HALLT|DNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 CPRCHVPV 10
CP C PV
Sbjct: 444 CPICDAPV 451


>sp|SYI_THEKO|ISOLEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 CPRCH 7
CPRC
Sbjct: 184 CPRCQ 188


>sp|DNLJ_HALWD|DNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 CPRCHVPV 10
CP CH V
Sbjct: 479 CPICHSSV 486


>sp|TF2B_METMP|TRANSCRIPTION initiation factor IIB|Methanococcus maripaludis (strain DSM 14266

Query: 3 CPRCHVP 9
C RC VP
Sbjct: 205 CRRCKVP 211


>sp|DP2L_PYRAB|DNA polymerase II large subunit|Pyrococcus abyssi (strain GE5 /

Query: 3 CPRCHV 8
CP+C+V
Sbjct: 750 CPKCNV 755


Query: 3 CPRCH 7
CPRC+
Sbjct: 731 CPRCN 735


>sp|RUBH_METTH|PUTATIVE rubredoxin|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 CPRCHV 8
CPRC V
Sbjct: 25 CPRCGV 30


>sp|NOP10_THEAC|RIBOSOME biogenesis protein Nop10|Thermoplasma acidophilum (strain ATCC

Query: 1 KPCPRCHV 8
+ CPRCH
Sbjct: 6 RKCPRCHA 13


>sp|SYI_HALMA|ISOLEUCINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 184 CPRCETGI 191


>sp|RRP42_THEKO|EXOSOME complex component Rrp42|Thermococcus kodakarensis (strain ATCC

Query: 1 KPCPRCHVPV 10
+P P HVP+
Sbjct: 185 EPLPVNHVPI 194


>sp|Y931_METLZ|UPF0212 protein Mlab_0931|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 PCPRC 6
PCP C
Sbjct: 50 PCPYC 54


>sp|DNAJ_METMZ|CHAPERONE protein DnaJ|Methanosarcina mazei (Methanosarcina frisia)

Query: 2 PCPRC 6
PCP C
Sbjct: 200 PCPTC 204


>sp|DNAJ_METMA|CHAPERONE protein DnaJ|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 PCPRC 6
PCP C
Sbjct: 200 PCPTC 204


>sp|SYA_THEKO|ALANINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 KPCPRC 6
K CP+C
Sbjct: 18 KKCPKC 23


>sp|TF2B_METM6|TRANSCRIPTION initiation factor IIB|Methanococcus maripaludis (strain C6 /

Query: 3 CPRCHVP 9
C RC VP
Sbjct: 205 CRRCKVP 211


>sp|Y1650_METJA|UNCHARACTERIZED protein MJ1650|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 CPRC 6
CPRC
Sbjct: 153 CPRC 156


>sp|TRM1_HALSA|TRNA (guanine(26)-N(2))-dimethyltransferase|Halobacterium salinarum

Query: 3 CPRC 6
CPRC
Sbjct: 258 CPRC 261


>sp|TRM1_HALS3|TRNA (guanine(26)-N(2))-dimethyltransferase|Halobacterium salinarum

Query: 3 CPRC 6
CPRC
Sbjct: 258 CPRC 261


>sp|TFE_META3|TRANSCRIPTION factor E|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 CPRC 6
CPRC
Sbjct: 117 CPRC 120


>sp|TFE_HYPBU|TRANSCRIPTION factor E|Hyperthermus butylicus (strain DSM 5456

Query: 3 CPRC 6
CPRC
Sbjct: 136 CPRC 139


>sp|TFE_ARCFU|TRANSCRIPTION factor E|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 CPRC 6
CPRC
Sbjct: 139 CPRC 142


>sp|TFE_AERPE|TRANSCRIPTION factor E|Aeropyrum pernix (strain ATCC 700893

Query: 3 CPRC 6
CPRC
Sbjct: 130 CPRC 133


Query: 3 CPRC 6
CPRC
Sbjct: 149 CPRC 152


>sp|SYI_THEVO|ISOLEUCINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 CPRC 6
CPRC
Sbjct: 186 CPRC 189


>sp|SYI_THEAC|ISOLEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 CPRC 6
CPRC
Sbjct: 186 CPRC 189


>sp|SYI_SULTO|ISOLEUCINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 CPRC 6
CPRC
Sbjct: 181 CPRC 184


>sp|SYI_SACS2|ISOLEUCINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 CPRC 6
CPRC
Sbjct: 121 CPRC 124


>sp|SYI_SACI4|ISOLEUCINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 3 CPRC 6
CPRC
Sbjct: 184 CPRC 187


>sp|SYI_SACI3|ISOLEUCINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 3 CPRC 6
CPRC
Sbjct: 184 CPRC 187


>sp|SYI_PYRHO|ISOLEUCINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 CPRC 6
CPRC
Sbjct: 184 CPRC 187


>sp|SYI_PYRFU|ISOLEUCINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 CPRC 6
CPRC
Sbjct: 184 CPRC 187


>sp|SYI_PYRAE|ISOLEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 CPRC 6
CPRC
Sbjct: 185 CPRC 188


>sp|SYI_PYRAB|ISOLEUCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 3 CPRC 6
CPRC
Sbjct: 184 CPRC 187


>sp|SYI_PICTO|ISOLEUCINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 3 CPRC 6
CPRC
Sbjct: 187 CPRC 190


>sp|SYI_METTH|ISOLEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 CPRC 6
CPRC
Sbjct: 184 CPRC 187


>sp|SYI_METMP|ISOLEUCINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 3 CPRC 6
CPRC
Sbjct: 181 CPRC 184


>sp|SYI_METJA|ISOLEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 CPRC 6
CPRC
Sbjct: 181 CPRC 184


>sp|SYI_META3|ISOLEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 CPRC 6
CPRC
Sbjct: 182 CPRC 185


>sp|SYI_AERPE|ISOLEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 3 CPRC 6
CPRC
Sbjct: 189 CPRC 192


Query: 3 CPRC 6
CPRC
Sbjct: 514 CPRC 517


>sp|SYG_METTH|GLYCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 CPRC 6
CPRC
Sbjct: 130 CPRC 133


>sp|RGYR_THEKO|REVERSE gyrase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 CPRC 6
CPRC
Sbjct: 741 CPRC 744


>sp|RGYR_PYRHO|REVERSE gyrase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 CPRC 6
CPRC
Sbjct: 739 CPRC 742


>sp|RGYR_PYRFU|REVERSE gyrase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 CPRC 6
CPRC
Sbjct: 738 CPRC 741


>sp|RGYRA_NANEQ|REVERSE gyrase subunit A|Nanoarchaeum equitans (strain Kin4-M)

Query: 3 CPRC 6
CPRC
Sbjct: 133 CPRC 136


>sp|RGYR1_SULAC|REVERSE gyrase 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 CPRC 6
CPRC
Sbjct: 724 CPRC 727


>sp|HYPA_PYRHO|HYDROGENASE maturation factor HypA|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 CPRC 6
CPRC
Sbjct: 110 CPRC 113


>sp|DP2L_THEAC|DNA polymerase II large subunit|Thermoplasma acidophilum (strain ATCC

Query: 3 CPRC 6
CPRC
Sbjct: 630 CPRC 633


>sp|DNAJ_HALLT|CHAPERONE protein DnaJ|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 CPRC 6
CPRC
Sbjct: 203 CPRC 206


>sp|TF2B_METM7|TRANSCRIPTION initiation factor IIB|Methanococcus maripaludis (strain C7 /

Query: 3 CPRCHVP 9
C RC VP
Sbjct: 205 CRRCKVP 211


>sp|SYL_PYRCJ|LEUCINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 CPRCHVPV 10
CPR +PV
Sbjct: 184 CPRHQMPV 191


>sp|DP2L_PYRHO|DNA polymerase II large subunit|Pyrococcus horikoshii (strain ATCC

Query: 3 CPRCHV 8
CP+C+V
Sbjct: 747 CPKCNV 752


Query: 3 CPRCH 7
CPRC+
Sbjct: 728 CPRCN 732


>sp|TF2B_METM5|TRANSCRIPTION initiation factor IIB|Methanococcus maripaludis (strain C5 /

Query: 3 CPRCHVP 9
C RC VP
Sbjct: 205 CRRCKVP 211


>sp|RRP42_THEGJ|EXOSOME complex component Rrp42|Thermococcus gammatolerans (strain DSM

Query: 1 KPCPRCHVPV 10
+P P HVP+
Sbjct: 185 EPLPVKHVPI 194


>sp|Y282_ARCFU|UPF0212 protein AF_0282|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 CPRCHVPV 10
CP+C+ P+
Sbjct: 51 CPKCNSPL 58


>sp|TF2B_METTL|TRANSCRIPTION initiation factor IIB|Methanothermococcus thermolithotrophicus

Query: 3 CPRCHVP 9
C RC VP
Sbjct: 205 CRRCKVP 211


>sp|AROC_CALMQ|CHORISMATE synthase|Caldivirga maquilingensis (strain ATCC 700844

Query: 6 CHVPV 10
CH+PV
Sbjct: 49 CHIPV 53


>sp|TRM1_SACI3|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 3 CPRC 6
CPRC
Sbjct: 246 CPRC 249


>sp|SYT_THEVO|THREONINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 CPRCH 7
CP CH
Sbjct: 439 CPVCH 443


>sp|SYT_THEAC|THREONINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 CPRCH 7
CP CH
Sbjct: 439 CPVCH 443


>sp|RF1_METST|PEPTIDE chain release factor subunit|Methanosphaera stadtmanae (strain ATCC

Query: 1 KPCPRCH 7
K CP+C+
Sbjct: 350 KRCPKCN 356


>sp|TRM1_SACI7|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 3 CPRC 6
CPRC
Sbjct: 246 CPRC 249


>sp|TRM1_SACI6|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 3 CPRC 6
CPRC
Sbjct: 246 CPRC 249


>sp|TRM1_SACI4|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 3 CPRC 6
CPRC
Sbjct: 246 CPRC 249


>sp|TRM1_SACI2|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 3 CPRC 6
CPRC
Sbjct: 246 CPRC 249


>sp|TRM1_SACI1|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 3 CPRC 6
CPRC
Sbjct: 246 CPRC 249


>sp|SYV_METTH|VALINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 176 CPRCETAI 183


>sp|DNAJ_HALWD|CHAPERONE protein DnaJ|Haloquadratum walsbyi (strain DSM 16790

Query: 1 KPCPRC 6
+ CPRC
Sbjct: 202 QTCPRC 207


>sp|TIAS_CALMQ|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Caldivirga maquilingensis

Query: 3 CPRC 6
CPRC
Sbjct: 333 CPRC 336


>sp|SYI_METTM|ISOLEUCINE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 3 CPRC 6
CPRC
Sbjct: 184 CPRC 187


>sp|DP2L_THEKO|DNA polymerase II large subunit|Thermococcus kodakarensis (strain ATCC

Query: 3 CPRCHV 8
CP+C V
Sbjct: 759 CPKCDV 764


>sp|Y1270_PYRAB|UPF0148 protein PYRAB12700|Pyrococcus abyssi (strain GE5 /

Query: 1 KPCPRCHVPV 10
K CP+C P+
Sbjct: 24 KHCPKCGSPL 33


>sp|SYS_HALWD|SERINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 CPRCHVPV 10
CP VPV
Sbjct: 240 CPTAEVPV 247


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 3 CPRC 6
CPRC
Sbjct: 181 CPRC 184


>sp|Y009_METJA|UNCHARACTERIZED protein MJ0009|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KPCPRCH 7
+PC CH
Sbjct: 133 RPCIGCH 139


>sp|SYI_METKA|ISOLEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 3 CPRC 6
CPRC
Sbjct: 186 CPRC 189


>sp|SYA_KORCO|ALANINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 KPCPRC 6
K CP+C
Sbjct: 17 KRCPKC 22


>sp|SYA_ARCFU|ALANINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KPCPRC 6
K CP+C
Sbjct: 21 KRCPKC 26


>sp|HDRB_METTM|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit B|Methanothermobacter

Query: 3 CPRCHV 8
CP CH+
Sbjct: 231 CPFCHL 236


>sp|HDRB_METTH|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit B|Methanothermobacter

Query: 3 CPRCHV 8
CP CH+
Sbjct: 231 CPFCHL 236


>sp|Y1227_METJA|PUTATIVE glycyl-radical enzyme activating enzyme|Methanocaldococcus

Query: 3 CPRCH 7
CP CH
Sbjct: 33 CPYCH 37


>sp|TRM1_SACS2|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus solfataricus

Query: 3 CPRC 6
CPRC
Sbjct: 246 CPRC 249


>sp|DP2L_METTP|DNA polymerase II large subunit|Methanothrix thermoacetophila (strain

Query: 3 CPRC 6
CPRC
Sbjct: 656 CPRC 659


>sp|AROC_PYRIL|CHORISMATE synthase|Pyrobaculum islandicum (strain DSM 4184

Query: 6 CHVPV 10
CH+PV
Sbjct: 49 CHIPV 53


>sp|SYV_THEKO|VALINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 CPRC 6
CPRC
Sbjct: 171 CPRC 174


>sp|SYV_METKA|VALINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 191 CPRCETAI 198


>sp|AROC_PYRNV|CHORISMATE synthase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 6 CHVPV 10
CH+PV
Sbjct: 49 CHIPV 53


>sp|PUS10_METKA|TRNA pseudouridine synthase Pus10|Methanopyrus kandleri (strain AV19 /

Query: 2 PCPRCH 7
PCPRC
Sbjct: 205 PCPRCR 210


>sp|TFE_METJA|TRANSCRIPTION factor E|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 CPRCHV 8
CP C+V
Sbjct: 117 CPNCNV 122


>sp|SYV_PYRFU|VALINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 CPRC 6
CPRC
Sbjct: 171 CPRC 174


>sp|SYV_PYRAE|VALINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 CPRC 6
CPRC
Sbjct: 175 CPRC 178


>sp|DP2L_METMJ|DNA polymerase II large subunit|Methanoculleus marisnigri (strain ATCC

Query: 3 CPRCH 7
CPRC+
Sbjct: 664 CPRCN 668


Query: 3 CPRC 6
CPRC
Sbjct: 652 CPRC 655


>sp|AROC_PYRCJ|CHORISMATE synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 6 CHVPV 10
CH+PV
Sbjct: 49 CHIPV 53


>sp|SYV_METTP|VALINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 CPRCHVPV 10
CPRC +
Sbjct: 174 CPRCATAI 181


>sp|PRIS_CENSY|DNA primase small subunit PriS|Cenarchaeum symbiosum (strain A)

Query: 3 CPRC 6
CPRC
Sbjct: 126 CPRC 129


>sp|NPD_AERPE|NAD-DEPENDENT protein deacylase|Aeropyrum pernix (strain ATCC 700893

Query: 3 CPRC 6
CPRC
Sbjct: 146 CPRC 149


>sp|MTRB_METVS|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit B|Methanococcus vannielii (strain

Query: 1 KPCPRCHV 8
K CP HV
Sbjct: 5 KVCPEIHV 12


>sp|LONH_METTH|PUTATIVE lon protease homolog|Methanothermobacter thermautotrophicus (strain

Query: 3 CPRC 6
CPRC
Sbjct: 145 CPRC 148


>sp|TRM1_METKA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanopyrus kandleri

Query: 1 KPCPRC 6
+ CPRC
Sbjct: 256 RECPRC 261


>sp|HDRB1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B1|Methanococcus

Query: 3 CPRCHV 8
CP CH+
Sbjct: 236 CPFCHL 241


>sp|RS27A_METM5|SMALL ribosomal subunit protein eS31|Methanococcus maripaludis (strain

Query: 1 KPCPRC 6
K CP+C
Sbjct: 29 KACPKC 34


>sp|NPD_PYRAB|NAD-DEPENDENT protein deacylase|Pyrococcus abyssi (strain GE5 /

Query: 3 CPRC 6
CPRC
Sbjct: 150 CPRC 153


>sp|RS27A_METLZ|SMALL ribosomal subunit protein eS31|Methanocorpusculum labreanum

Query: 1 KPCPRCHVPV 10
+ CPRC V
Sbjct: 30 RACPRCGAGV 39


>sp|SPT4_METJA|TRANSCRIPTION elongation factor Spt4|Methanocaldococcus jannaschii (strain ATCC

Query: 3 CPRCHVP 9
CP CH P
Sbjct: 16 CPICHSP 22


>sp|TIAS_THEGJ|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Thermococcus gammatolerans

Query: 3 CPRC 6
CPRC
Sbjct: 356 CPRC 359


>sp|HDRB1_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 3 CPRCHV 8
CP CH+
Sbjct: 231 CPFCHL 236


>sp|RS27A_SACS2|SMALL ribosomal subunit protein eS31|Saccharolobus solfataricus (strain

Query: 1 KPCPRC 6
K CPRC
Sbjct: 39 KKCPRC 44


>sp|PYLS_METMA|PYRROLYSINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 KPCPRCHV 8
K C RC V
Sbjct: 67 KTCKRCRV 74


>sp|HDRB2_METAC|FERREDOXIN/F(420)H(2)-DEPENDENT CoB-CoM heterodisulfide reductase subunit|Methanosarcina

Query: 3 CPRCHV 8
CP CH+
Sbjct: 232 CPFCHL 237




85|Sequence|421|430|CHVPVEKNGG

>sp|DP2L_NANEQ|DNA polymerase II large subunit|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 HVPVEKNG 9
H+PVE NG
Sbjct: 213 HIPVEING 220


>sp|RADA_PICTO|DNA repair and recombination protein|Picrophilus torridus (strain ATCC

Query: 3 VPVEKNG 9
+PVEKNG
Sbjct: 133 MPVEKNG 139


>sp|DP2L_METMP|DNA polymerase II large subunit|Methanococcus maripaludis (strain DSM

Query: 2 HVPVEK 7
HVP+EK
Sbjct: 766 HVPIEK 771


>sp|Y1413_SULTO|PROTEIN STK_14130|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 VPVEKNGG 10
+PVE N G
Sbjct: 129 IPVENNAG 136


>sp|AATA_METAC|A-TYPE ATP synthase subunit A|Methanosarcina acetivorans (strain ATCC

Query: 2 HVPVEKNGG 10
HV +EK GG
Sbjct: 92 HVLLEKTGG 100


>sp|Y1128_METJA|UNCHARACTERIZED protein MJ1128|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 VPVEKNG 9
VPVEK G
Sbjct: 187 VPVEKGG 193


>sp|MOBA_PYRFU|PROBABLE molybdenum cofactor guanylyltransferase|Pyrococcus furiosus (strain

Query: 1 CHVPVE 6
C++PVE
Sbjct: 162 CYIPVE 167


>sp|RL4_METB6|LARGE ribosomal subunit protein uL4|Methanoregula boonei (strain DSM

Query: 2 HVPVEKNG 9
HVP KNG
Sbjct: 69 HVPRLKNG 76


>sp|Y1567_ARCFU|UNCHARACTERIZED protein AF_1567|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 VEKNGG 10
+EKNGG
Sbjct: 164 IEKNGG 169


>sp|DP2L_HALWD|DNA polymerase II large subunit|Haloquadratum walsbyi (strain DSM 16790

Query: 2 HVPVEKNG 9
+ P+E+NG
Sbjct: 1554 NTPIERNG 1561


>sp|SYI_THEVO|ISOLEUCINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 4 PVEKNG 9
PV+KNG
Sbjct: 343 PVDKNG 348


>sp|SYI_THEAC|ISOLEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 PVEKNG 9
PV+KNG
Sbjct: 343 PVDKNG 348


>sp|HIS4_META3|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanococcus aeolicus (strain

Query: 3 VPVEKNGG 10
VPVE GG
Sbjct: 75 VPVEVGGG 82




86|Sequence|426|435|EKNGGCMHMK

>sp|ACD_METJA|ACETATE--COA ligase [ADP-forming]|Methanocaldococcus jannaschii (strain ATCC

Query: 1 EKNGGCM 7
EK GGC+
Sbjct: 691 EKEGGCI 697


>sp|THIC_METB6|PHOSPHOMETHYLPYRIMIDINE synthase|Methanoregula boonei (strain DSM 21154

Query: 1 EKNGGCMHMK 10
+K+G +HMK
Sbjct: 131 KKDGAVIHMK 140


>sp|Y486_METJA|UNCHARACTERIZED protein MJ0486|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EKNGGCM 7
+KNGGC+
Sbjct: 53 KKNGGCI 59


>sp|Y1567_ARCFU|UNCHARACTERIZED protein AF_1567|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EKNGGCMHMK 10
EKNGG + +
Sbjct: 165 EKNGGVFYAR 174


>sp|END4_CENSY|PROBABLE endonuclease 4|Cenarchaeum symbiosum (strain A)

Query: 1 EKNGGCMHM 9
E +G C+HM
Sbjct: 61 EPSGTCVHM 69


>sp|HIS6_METKA|IMIDAZOLE glycerol phosphate synthase subunit|Methanopyrus kandleri (strain

Query: 3 NGGCMHMK 10
+GGC H K
Sbjct: 221 SGGCGHPK 228




87|Sequence|431|440|CMHMKCPQPQ

>sp|IF2G_META3|TRANSLATION initiation factor 2 subunit|Methanococcus aeolicus (strain ATCC

Query: 5 KCPQPQ 10
KCPQPQ
Sbjct: 120 KCPQPQ 125


>sp|IF2G_METMP|TRANSLATION initiation factor 2 subunit|Methanococcus maripaludis (strain DSM

Query: 5 KCPQPQ 10
+CPQPQ
Sbjct: 120 ECPQPQ 125


>sp|IF2G_METM7|TRANSLATION initiation factor 2 subunit|Methanococcus maripaludis (strain C7 /

Query: 5 KCPQPQ 10
+CPQPQ
Sbjct: 120 ECPQPQ 125


>sp|IF2G_METM6|TRANSLATION initiation factor 2 subunit|Methanococcus maripaludis (strain C6 /

Query: 5 KCPQPQ 10
+CPQPQ
Sbjct: 120 ECPQPQ 125


>sp|IF2G_METM5|TRANSLATION initiation factor 2 subunit|Methanococcus maripaludis (strain C5 /

Query: 5 KCPQPQ 10
+CPQPQ
Sbjct: 120 ECPQPQ 125


>sp|IF2G_METVS|TRANSLATION initiation factor 2 subunit|Methanococcus vannielii (strain ATCC

Query: 5 KCPQPQ 10
+CPQPQ
Sbjct: 120 ECPQPQ 125


>sp|PYRI_SACS2|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus solfataricus

Query: 4 MKCPQPQ 10
+KCP PQ
Sbjct: 111 IKCPNPQ 117


>sp|PYRI_SACI7|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 4 MKCPQPQ 10
+KCP PQ
Sbjct: 111 IKCPNPQ 117


>sp|PYRI_SACI6|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 4 MKCPQPQ 10
+KCP PQ
Sbjct: 111 IKCPNPQ 117


>sp|PYRI_SACI4|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 4 MKCPQPQ 10
+KCP PQ
Sbjct: 111 IKCPNPQ 117


>sp|PYRI_SACI3|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 4 MKCPQPQ 10
+KCP PQ
Sbjct: 111 IKCPNPQ 117


>sp|PYRI_SACI2|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 4 MKCPQPQ 10
+KCP PQ
Sbjct: 111 IKCPNPQ 117


>sp|PYRI_SACI1|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 4 MKCPQPQ 10
+KCP PQ
Sbjct: 111 IKCPNPQ 117


>sp|IF2G_THEVO|TRANSLATION initiation factor 2 subunit|Thermoplasma volcanium (strain ATCC

Query: 6 CPQPQ 10
CPQPQ
Sbjct: 119 CPQPQ 123


>sp|IF2G_THEAC|TRANSLATION initiation factor 2 subunit|Thermoplasma acidophilum (strain ATCC

Query: 6 CPQPQ 10
CPQPQ
Sbjct: 119 CPQPQ 123


>sp|IF2G_METJA|TRANSLATION initiation factor 2 subunit|Methanocaldococcus jannaschii (strain

Query: 6 CPQPQ 10
CPQPQ
Sbjct: 121 CPQPQ 125


>sp|IF2G_METMA|TRANSLATION initiation factor 2 subunit|Methanosarcina mazei (strain ATCC

Query: 5 KCPQPQ 10
KCP+PQ
Sbjct: 80 KCPEPQ 85


Query: 6 CPQPQ 10
CPQPQ
Sbjct: 141 CPQPQ 145


>sp|IF2G_ARCFU|TRANSLATION initiation factor 2 subunit|Archaeoglobus fulgidus (strain ATCC

Query: 5 KCPQPQ 10
KCP+PQ
Sbjct: 137 KCPRPQ 142


>sp|IF2G_METAC|TRANSLATION initiation factor 2 subunit|Methanosarcina acetivorans (strain ATCC

Query: 5 KCPQPQ 10
+CPQPQ
Sbjct: 152 ECPQPQ 157


Query: 5 KCPQPQ 10
KCP PQ
Sbjct: 92 KCPAPQ 97


>sp|IF2G_AERPE|TRANSLATION initiation factor 2 subunit|Aeropyrum pernix (strain ATCC 700893

Query: 6 CPQPQ 10
CPQPQ
Sbjct: 124 CPQPQ 128


>sp|IF2G_METTH|TRANSLATION initiation factor 2 subunit|Methanothermobacter thermautotrophicus

Query: 6 CPQPQ 10
CPQPQ
Sbjct: 119 CPQPQ 123


>sp|IF2G_METKA|TRANSLATION initiation factor 2 subunit|Methanopyrus kandleri (strain AV19 /

Query: 6 CPQPQ 10
CPQPQ
Sbjct: 120 CPQPQ 124


>sp|AROC_AERPE|CHORISMATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 4 MKCPQPQ 10
+KCP P+
Sbjct: 184 LKCPDPE 190


>sp|CHEB2_METHJ|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase 2|Methanospirillum

Query: 3 HMKCPQPQ 10
H+K P+P+
Sbjct: 141 HLKVPKPE 148


>sp|RADA_METJA|DNA repair and recombination protein|Methanocaldococcus jannaschii

Query: 1 CMHMKCPQ 8
C++++CP+
Sbjct: 150 CVNLQCPE 157


>sp|SFSA_PYRCJ|SUGAR fermentation stimulation protein homolog|Pyrobaculum

Query: 2 MHMKCPQP 9
MH PQP
Sbjct: 1 MHFPLPQP 8


>sp|QUEE_METHJ|7-CARBOXY-7-DEAZAGUANINE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 CMHMKCP 7
CM +KCP
Sbjct: 145 CMDVKCP 151


>sp|PYRI_SULAC|ASPARTATE carbamoyltransferase regulatory chain|Sulfolobus acidocaldarius

Query: 4 MKCPQP 9
+KCP P
Sbjct: 111 LKCPNP 116


>sp|TF2B_CALMQ|TRANSCRIPTION initiation factor IIB|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 CMHMKC 6
C+HM C
Sbjct: 196 CLHMAC 201


>sp|PYRI_THEKO|ASPARTATE carbamoyltransferase regulatory chain|Thermococcus kodakarensis

Query: 4 MKCPQP 9
+KCP P
Sbjct: 106 LKCPNP 111




88|Sequence|436|445|CPQPQCRLEW

>sp|IF2G_METMA|TRANSLATION initiation factor 2 subunit|Methanosarcina mazei (strain ATCC

Query: 1 CPQPQC 6
CP+PQC
Sbjct: 81 CPEPQC 86


Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 141 CPQPQTK 147


>sp|IF2G_THEVO|TRANSLATION initiation factor 2 subunit|Thermoplasma volcanium (strain ATCC

Query: 1 CPQPQCR 7
CPQPQ R
Sbjct: 119 CPQPQTR 125


>sp|IF2G_THEAC|TRANSLATION initiation factor 2 subunit|Thermoplasma acidophilum (strain ATCC

Query: 1 CPQPQCR 7
CPQPQ R
Sbjct: 119 CPQPQTR 125


>sp|PYRI_SACS2|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus solfataricus

Query: 1 CPQPQC 6
CP PQC
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI7|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 1 CPQPQC 6
CP PQC
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI6|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 1 CPQPQC 6
CP PQC
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI4|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 1 CPQPQC 6
CP PQC
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI3|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 1 CPQPQC 6
CP PQC
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI2|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 1 CPQPQC 6
CP PQC
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI1|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 1 CPQPQC 6
CP PQC
Sbjct: 113 CPNPQC 118


>sp|IF2G_METAC|TRANSLATION initiation factor 2 subunit|Methanosarcina acetivorans (strain

Query: 1 CPQPQC 6
CP PQC
Sbjct: 93 CPAPQC 98


Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 153 CPQPQTK 159


>sp|IF2G_METKA|TRANSLATION initiation factor 2 subunit|Methanopyrus kandleri (strain AV19 /

Query: 1 CPQPQCR 7
CPQPQ R
Sbjct: 120 CPQPQTR 126


>sp|IF2G_METVS|TRANSLATION initiation factor 2 subunit|Methanococcus vannielii (strain ATCC

Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 121 CPQPQTK 127


>sp|IF2G_METMP|TRANSLATION initiation factor 2 subunit|Methanococcus maripaludis (strain DSM

Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 121 CPQPQTK 127


>sp|IF2G_METM7|TRANSLATION initiation factor 2 subunit|Methanococcus maripaludis (strain C7 /

Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 121 CPQPQTK 127


>sp|IF2G_METM6|TRANSLATION initiation factor 2 subunit|Methanococcus maripaludis (strain C6 /

Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 121 CPQPQTK 127


>sp|IF2G_METM5|TRANSLATION initiation factor 2 subunit|Methanococcus maripaludis (strain C5 /

Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 121 CPQPQTK 127


>sp|IF2G_METJA|TRANSLATION initiation factor 2 subunit|Methanocaldococcus jannaschii (strain

Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 121 CPQPQTK 127


>sp|IF2G_META3|TRANSLATION initiation factor 2 subunit|Methanococcus aeolicus (strain ATCC

Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 121 CPQPQTK 127


>sp|IF2G_METTH|TRANSLATION initiation factor 2 subunit|Methanothermobacter thermautotrophicus

Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 119 CPQPQTK 125


>sp|IF2G_PYRFU|TRANSLATION initiation factor 2 subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 1 CPQPQCR 7
CP+PQ R
Sbjct: 121 CPRPQTR 127


>sp|IF2G_AERPE|TRANSLATION initiation factor 2 subunit|Aeropyrum pernix (strain ATCC 700893

Query: 1 CPQPQCR 7
CPQPQ +
Sbjct: 124 CPQPQTK 130


>sp|AMZA_PYRHO|ARCHAEMETZINCIN horikoshii (strain ATCC 700860

Query: 1 CPQPQCRLEW 10
CP P+C + +
Sbjct: 148 CPNPKCVMHF 157


>sp|AMZA_PYRFU|ARCHAEMETZINCIN furiosus (strain ATCC 43587

Query: 1 CPQPQCRLEW 10
CP P+C + +
Sbjct: 148 CPNPKCVMHF 157


>sp|AMZA_PYRAB|ARCHAEMETZINCIN abyssi (strain GE5 /

Query: 1 CPQPQCRLEW 10
CP P+C + +
Sbjct: 148 CPNPKCVMHF 157


>sp|IF2G_PYRAB|TRANSLATION initiation factor 2 subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 CPQPQCR 7
CP+PQ R
Sbjct: 121 CPRPQTR 127


>sp|IF2G_PYRHO|TRANSLATION initiation factor 2 subunit|Pyrococcus horikoshii (strain ATCC

Query: 1 CPQPQCR 7
CP+PQ R
Sbjct: 121 CPRPQTR 127


>sp|PYRI_METLZ|ASPARTATE carbamoyltransferase regulatory chain|Methanocorpusculum labreanum

Query: 1 CPQPQC 6
CP P C
Sbjct: 112 CPNPNC 117


>sp|PYRI_METTH|ASPARTATE carbamoyltransferase regulatory chain|Methanothermobacter

Query: 1 CPQPQC 6
CP P C
Sbjct: 111 CPNPNC 116


>sp|PYRI_HYPBU|ASPARTATE carbamoyltransferase regulatory chain|Hyperthermus butylicus

Query: 1 CPQPQC 6
CP P C
Sbjct: 110 CPNPSC 115


>sp|PYRI_STAMF|ASPARTATE carbamoyltransferase regulatory chain|Staphylothermus marinus

Query: 1 CPQPQC 6
CP P C
Sbjct: 116 CPNPTC 121


>sp|PYRI_HALSA|ASPARTATE carbamoyltransferase regulatory chain|Halobacterium salinarum

Query: 1 CPQPQC 6
CP P C
Sbjct: 110 CPNPNC 115


>sp|GLNA1_METMA|GLUTAMINE synthetase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 CPQPQC 6
CP P C
Sbjct: 339 CPDPAC 344


>sp|IF2G_ARCFU|TRANSLATION initiation factor 2 subunit|Archaeoglobus fulgidus (strain ATCC

Query: 1 CPQPQCR 7
CP+PQ +
Sbjct: 138 CPRPQTK 144


>sp|PYRI_SULAC|ASPARTATE carbamoyltransferase regulatory chain|Sulfolobus acidocaldarius

Query: 1 CPQPQC 6
CP P C
Sbjct: 113 CPNPYC 118


>sp|COFH_METBU|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanococcoides burtonii (strain DSM

Query: 1 CPQPQCRLEW 10
CP R EW
Sbjct: 180 CPDKLTRQEW 189


>sp|PYRI_METB6|ASPARTATE carbamoyltransferase regulatory chain|Methanoregula boonei (strain

Query: 1 CPQPQC 6
CP P C
Sbjct: 121 CPNPGC 126


>sp|TFE_METS3|TRANSCRIPTION factor E|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 CPQPQCRLEW 10
CPQ RL++
Sbjct: 115 CPQGHIRLDF 124


>sp|PYRI_METMJ|ASPARTATE carbamoyltransferase regulatory chain|Methanoculleus marisnigri

Query: 1 CPQPQC 6
CP P C
Sbjct: 113 CPNPGC 118


>sp|Y1060_METJA|UNCHARACTERIZED protein MJ1060|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 PQCRLEW 10
P C+L W
Sbjct: 361 PDCKLVW 367


>sp|PYRI_THEPD|ASPARTATE carbamoyltransferase regulatory chain|Thermofilum pendens (strain

Query: 1 CPQPQC 6
CP P C
Sbjct: 108 CPNPNC 113


>sp|PYRI_THEGJ|ASPARTATE carbamoyltransferase regulatory chain|Thermococcus gammatolerans

Query: 1 CPQPQC 6
CP P C
Sbjct: 107 CPNPNC 112


>sp|PYRI_THEKO|ASPARTATE carbamoyltransferase regulatory chain|Thermococcus kodakarensis

Query: 1 CPQPQC 6
CP P C
Sbjct: 108 CPNPNC 113


>sp|PYRI_METPE|ASPARTATE carbamoyltransferase regulatory chain|Methanosphaerula palustris

Query: 1 CPQPQC 6
CP P C
Sbjct: 113 CPNPGC 118


>sp|TTH_ACIAM|TETRATHIONATE hydrolase|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 4 PQCRLEW 10
P C+L W
Sbjct: 122 PPCKLPW 128


>sp|PYRI_AERPE|ASPARTATE carbamoyltransferase regulatory chain|Aeropyrum pernix (strain ATCC

Query: 1 CPQPQC 6
CP P C
Sbjct: 111 CPNPTC 116


>sp|PYRI_METKA|ASPARTATE carbamoyltransferase regulatory chain|Methanopyrus kandleri (strain

Query: 1 CPQPQC 6
CP P C
Sbjct: 107 CPNPNC 112


>sp|Y575_METJA|UNCHARACTERIZED protein MJ0575|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CPQPQCRLE 9
CP+ C L+
Sbjct: 109 CPEEMCLLD 117




89|Sequence|441|450|CRLEWCWNCG

>sp|UPPS_ARCFU|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Archaeoglobus

Query: 3 LEWCWNCG 10
LEWCW+ G
Sbjct: 57 LEWCWDLG 64


>sp|Y85A_METJA|PUTATIVE transposase MJ0856.1|Methanocaldococcus jannaschii (strain ATCC

Query: 2 RLEWCWNCG 10
RL +C++CG
Sbjct: 58 RLMYCFDCG 66


>sp|Y1401_METJA|PROBABLE ATP-dependent helicase MJ1401|Methanocaldococcus jannaschii (strain

Query: 1 CR---LEWCWNCG 10
CR LE C NCG
Sbjct: 117 CRYGNLEICINCG 129


>sp|SPH3_HALVD|SMC-LIKE protein Sph3|Haloferax volcanii (strain ATCC 29605

Query: 6 CWNCG 10
CW CG
Sbjct: 329 CWTCG 333


>sp|SPH2_HALSA|SMC-LIKE protein Sph2|Halobacterium salinarum (strain ATCC 700922

Query: 6 CWNCG 10
CW CG
Sbjct: 341 CWTCG 345


>sp|SPH2_HALS3|SMC-LIKE protein Sph2|Halobacterium salinarum (strain ATCC 29341

Query: 6 CWNCG 10
CW CG
Sbjct: 341 CWTCG 345


>sp|Y066_METJA|UNCHARACTERIZED protein MJ0066|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 LEWCWNC 9
L+WC NC
Sbjct: 16 LKWCKNC 22


>sp|RPO1N_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo1N|Sulfolobus acidocaldarius (strain ATCC

Query: 6 CWNCG 10
CW CG
Sbjct: 98 CWRCG 102


>sp|IORA_THEKO|INDOLEPYRUVATE oxidoreductase subunit IorA|Thermococcus kodakarensis (strain ATCC

Query: 6 CWNCG 10
CW CG
Sbjct: 625 CWGCG 629


>sp|IORA_PYRHO|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus horikoshii (strain ATCC

Query: 6 CWNCG 10
CW CG
Sbjct: 625 CWGCG 629


>sp|IORA_PYRAB|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus abyssi (strain GE5 /

Query: 6 CWNCG 10
CW CG
Sbjct: 625 CWGCG 629


>sp|SYV_SULTO|VALINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 LEWCWN 8
LEW WN
Sbjct: 409 LEWDWN 414


>sp|SYV_SULAC|VALINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 LEWCWN 8
LEW WN
Sbjct: 427 LEWDWN 432


>sp|Y045_METTH|MEMO1 family protein MTH_45|Methanothermobacter thermautotrophicus

Query: 2 RLEWCW 7
R+EWC+
Sbjct: 22 RIEWCF 27


>sp|TTRA_ARCFU|TETRATHIONATE reductase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 EWCWNCG 10
EWC CG
Sbjct: 500 EWCEICG 506


>sp|OFOB2_AERPE|2-OXOACID:FERREDOXIN oxidoreductase 2, subunit beta|Aeropyrum pernix (strain ATCC

Query: 3 LEWCWNCG 10
++WC CG
Sbjct: 14 VQWCPGCG 21


>sp|UPPS_METMA|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Methanosarcina

Query: 3 LEWCWNCG 10
+EWC+ G
Sbjct: 63 IEWCYEIG 70


>sp|UPPS_METAC|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Methanosarcina

Query: 3 LEWCWNCG 10
+EWC+ G
Sbjct: 63 IEWCYEIG 70


>sp|DP2L_CENSY|DNA polymerase II large subunit|Cenarchaeum symbiosum (strain A)

Query: 6 CWNCG 10
CW CG
Sbjct: 636 CWACG 640


>sp|OFOB2_SULTO|2-OXOACID:FERREDOXIN oxidoreductase 2, subunit beta|Sulfurisphaera tokodaii (strain

Query: 3 LEWCWNCG 10
++WC CG
Sbjct: 9 VDWCPGCG 16


>sp|HDRC_METTM|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 3 LEWCWNCG 10
LE+C+ CG
Sbjct: 32 LEYCFQCG 39


>sp|HDRC_METTH|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 3 LEWCWNCG 10
LE+C+ CG
Sbjct: 32 LEYCFQCG 39


>sp|OFOB_SULSP|2-OXOACID:FERREDOXIN oxidoreductase subunit beta|Sulfolobus sp

Query: 4 EWCWNCG 10
+WC CG
Sbjct: 10 DWCPGCG 16


>sp|OFOB_SACSO|2-OXOACID:FERREDOXIN oxidoreductase subunit beta|Saccharolobus solfataricus

Query: 4 EWCWNCG 10
+WC CG
Sbjct: 10 DWCPGCG 16


>sp|OFOB1_SULTO|2-OXOACID:FERREDOXIN oxidoreductase 1, subunit beta|Sulfurisphaera tokodaii (strain

Query: 4 EWCWNCG 10
+WC CG
Sbjct: 10 DWCPGCG 16


>sp|OFOB1_AERPE|2-OXOACID:FERREDOXIN oxidoreductase 1, subunit beta|Aeropyrum pernix (strain ATCC

Query: 4 EWCWNCG 10
+WC CG
Sbjct: 16 DWCPGCG 22


>sp|SYL_HALSA|LEUCINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 4 EWCWNC 9
E CW C
Sbjct: 177 ELCWRC 182


>sp|HELS_CALMQ|ATP-DEPENDENT DNA helicase Hel308|Caldivirga maquilingensis (strain ATCC 700844

Query: 5 WCWNCG 10
W WN G
Sbjct: 136 WIWNVG 141


>sp|SYI_PYRAE|ISOLEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 6 CWNCG 10
CW CG
Sbjct: 402 CWRCG 406


>sp|SYV_SACS2|VALINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 LEWCWN 8
+EW WN
Sbjct: 435 IEWDWN 440


>sp|Y201_METJA|UNCHARACTERIZED protein MJ0201|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 6 CWNCG 10
CW CG
Sbjct: 120 CWVCG 124


>sp|QUEC_METAC|7-CYANO-7-DEAZAGUANINE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 LEWCWNC 9
LE+ W+C
Sbjct: 189 LEYSWSC 195


>sp|QUEC_METMA|7-CYANO-7-DEAZAGUANINE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 LEWCWNC 9
LE+ W+C
Sbjct: 189 LEYSWSC 195


>sp|Y1178_METTH|UPF0251 protein MTH_1178|Methanothermobacter thermautotrophicus (strain

Query: 1 CRLEWCWNCG 10
CR E C CG
Sbjct: 173 CRTEKCPKCG 182


>sp|QUEC_METBF|7-CYANO-7-DEAZAGUANINE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 3 LEWCWNC 9
LE+ W+C
Sbjct: 189 LEYSWSC 195


>sp|QUEC_METBU|7-CYANO-7-DEAZAGUANINE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 3 LEWCWNC 9
LE+ W+C
Sbjct: 188 LEYSWSC 194


>sp|GLPA1_HALVD|ANAEROBIC glycerol-3-phosphate dehydrogenase subunit A1|Haloferax volcanii

Query: 2 RLEWCWNCG 10
+LE C CG
Sbjct: 103 KLEGCRECG 111


>sp|Y834_METJA|UNCHARACTERIZED protein MJ0834|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CRLEW 5
C+LEW
Sbjct: 115 CQLEW 119


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 3 LEWCWNCG 10
+ WC CG
Sbjct: 178 VNWCPRCG 185




90|Sequence|446|455|CWNCGCEWNR

>sp|SPH3_HALVD|SMC-LIKE protein Sph3|Haloferax volcanii (strain ATCC 29605

Query: 1 CWNCGCEWNR 10
CW CG E +R
Sbjct: 329 CWTCGTEVDR 338


>sp|SPH2_HALSA|SMC-LIKE protein Sph2|Halobacterium salinarum (strain ATCC 700922

Query: 1 CWNCGCEWNR 10
CW CG E R
Sbjct: 341 CWTCGTEVER 350


>sp|SPH2_HALS3|SMC-LIKE protein Sph2|Halobacterium salinarum (strain ATCC 29341

Query: 1 CWNCGCEWNR 10
CW CG E R
Sbjct: 341 CWTCGTEVER 350


>sp|RS5_METMJ|SMALL ribosomal subunit protein uS5|Methanoculleus marisnigri (strain

Query: 2 WNCGCE 7
W CGCE
Sbjct: 119 WECGCE 124


>sp|HYPA_PYRHO|HYDROGENASE maturation factor HypA|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 CWNCGCEW 8
C NCG EW
Sbjct: 73 CRNCGYEW 80


>sp|HYPA_THESM|HYDROGENASE maturation factor HypA|Thermococcus sibiricus (strain DSM 12597

Query: 1 CWNCGCEW 8
C NCG EW
Sbjct: 73 CRNCGNEW 80


>sp|HYPA_PYRAB|HYDROGENASE maturation factor HypA|Pyrococcus abyssi (strain GE5 /

Query: 1 CWNCGCEW 8
C NCG EW
Sbjct: 73 CRNCGHEW 80


>sp|RS5_THEVO|SMALL ribosomal subunit protein uS5|Thermoplasma volcanium (strain ATCC

Query: 2 WNCGC 6
W CGC
Sbjct: 116 WECGC 120


>sp|RS5_THEAC|SMALL ribosomal subunit protein uS5|Thermoplasma acidophilum (strain ATCC

Query: 2 WNCGC 6
W CGC
Sbjct: 116 WECGC 120


>sp|RS5_PICTO|SMALL ribosomal subunit protein uS5|Picrophilus torridus (strain ATCC

Query: 2 WNCGC 6
W CGC
Sbjct: 116 WECGC 120


>sp|RS5_METTP|SMALL ribosomal subunit protein uS5|Methanothrix thermoacetophila (strain

Query: 2 WNCGC 6
W CGC
Sbjct: 121 WECGC 125


>sp|RS5_METJA|SMALL ribosomal subunit protein uS5|Methanocaldococcus jannaschii (strain

Query: 2 WNCGC 6
W CGC
Sbjct: 119 WECGC 123


>sp|RS5_METHJ|SMALL ribosomal subunit protein uS5|Methanospirillum hungatei JF-1

Query: 2 WNCGC 6
W CGC
Sbjct: 119 WECGC 123


>sp|RS5_METBU|SMALL ribosomal subunit protein uS5|Methanococcoides burtonii (strain DSM

Query: 2 WNCGC 6
W CGC
Sbjct: 120 WECGC 124


>sp|RS5_METB6|SMALL ribosomal subunit protein uS5|Methanoregula boonei (strain DSM

Query: 2 WNCGC 6
W CGC
Sbjct: 119 WECGC 123


>sp|RS5_METAR|SMALL ribosomal subunit protein uS5|Methanocella arvoryzae (strain DSM

Query: 2 WNCGC 6
W CGC
Sbjct: 123 WECGC 127


>sp|RS5_META3|SMALL ribosomal subunit protein uS5|Methanococcus aeolicus (strain ATCC

Query: 2 WNCGC 6
W CGC
Sbjct: 124 WECGC 128


>sp|RS5_ARCFU|SMALL ribosomal subunit protein uS5|Archaeoglobus fulgidus (strain ATCC

Query: 2 WNCGC 6
W CGC
Sbjct: 116 WECGC 120


>sp|RS5_METM7|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain C7

Query: 2 WNCGCEW 8
W CGC +
Sbjct: 131 WECGCGY 137


>sp|RPO1N_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo1N|Sulfolobus acidocaldarius (strain ATCC

Query: 1 CWNCG 5
CW CG
Sbjct: 98 CWRCG 102


>sp|IORA_THEKO|INDOLEPYRUVATE oxidoreductase subunit IorA|Thermococcus kodakarensis (strain ATCC

Query: 1 CWNCG 5
CW CG
Sbjct: 625 CWGCG 629


>sp|IORA_PYRHO|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus horikoshii (strain ATCC

Query: 1 CWNCG 5
CW CG
Sbjct: 625 CWGCG 629


>sp|IORA_PYRAB|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus abyssi (strain GE5 /

Query: 1 CWNCG 5
CW CG
Sbjct: 625 CWGCG 629


>sp|RS5_METM6|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain C6

Query: 2 WNCGC 6
W CGC
Sbjct: 131 WECGC 135


>sp|RS5_METM5|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain C5

Query: 2 WNCGC 6
W CGC
Sbjct: 131 WECGC 135


>sp|RS5_METLZ|SMALL ribosomal subunit protein uS5|Methanocorpusculum labreanum (strain

Query: 2 WNCGC 6
W CGC
Sbjct: 119 WECGC 123


>sp|RS5_HALSA|SMALL ribosomal subunit protein uS5|Halobacterium salinarum (strain ATCC

Query: 2 WNCGC 6
W CGC
Sbjct: 118 WECGC 122


>sp|RS5_METMP|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain DSM

Query: 2 WNCGC 6
W CGC
Sbjct: 127 WECGC 131


>sp|RS5_METVS|SMALL ribosomal subunit protein uS5|Methanococcus vannielii (strain ATCC

Query: 2 WNCGC 6
W CGC
Sbjct: 127 WECGC 131


>sp|RS5_METVA|SMALL ribosomal subunit protein uS5|Methanococcus vannielii

Query: 2 WNCGC 6
W CGC
Sbjct: 127 WECGC 131


>sp|HYPA_THEON|HYDROGENASE maturation factor HypA|Thermococcus onnurineus (strain NA1)

Query: 1 CWNCGCEW 8
C +CG EW
Sbjct: 73 CRDCGHEW 80


>sp|LIPA_METAR|LIPOYL synthase|Methanocella arvoryzae (strain DSM 22066

Query: 1 CWNCGC 6
CW+ GC
Sbjct: 49 CWDGGC 54


>sp|RS5_HALMA|SMALL ribosomal subunit protein uS5|Haloarcula marismortui (strain ATCC

Query: 2 WNCGC 6
W CGC
Sbjct: 118 WECGC 122


>sp|HYPA_IGNH4|HYDROGENASE maturation factor HypA|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 CWNCGCEW 8
C CG EW
Sbjct: 75 CKRCGHEW 82


>sp|HYPA_THEKO|HYDROGENASE maturation factor HypA|Thermococcus kodakarensis (strain ATCC

Query: 1 CWNCGCEW 8
C NC EW
Sbjct: 73 CRNCNYEW 80


>sp|DP2L_CENSY|DNA polymerase II large subunit|Cenarchaeum symbiosum (strain A)

Query: 1 CWNCG 5
CW CG
Sbjct: 636 CWACG 640


>sp|HYPA_THEGJ|HYDROGENASE maturation factor HypA|Thermococcus gammatolerans (strain DSM

Query: 1 CWNCGCEW 8
C NCG W
Sbjct: 73 CRNCGHTW 80


>sp|SYI_META3|ISOLEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 NCGCEWNR 10
+CGCE R
Sbjct: 525 DCGCEMKR 532


>sp|KPRS2_ARCFU|RIBOSE-PHOSPHATE pyrophosphokinase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 NCGCEWN 9
+ GCEW+
Sbjct: 163 HAGCEWD 169


>sp|TOP1_THEAC|DNA topoisomerase 1|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 CWNCGCEWNR 10
C N CE+N+
Sbjct: 739 CPNMQCEYNK 748


>sp|RS5_METKA|SMALL ribosomal subunit protein uS5|Methanopyrus kandleri (strain AV19 /

Query: 2 WNCGC 6
W CGC
Sbjct: 121 WECGC 125


>sp|RGYR2_AERPE|REVERSE gyrase 2|Aeropyrum pernix (strain ATCC 700893

Query: 1 CWNCG 5
C+NCG
Sbjct: 13 CYNCG 17


>sp|RGYR1_SULTO|REVERSE gyrase 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 CWNCG 5
C+NCG
Sbjct: 658 CYNCG 662


>sp|Y201_METJA|UNCHARACTERIZED protein MJ0201|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CWNCG 5
CW CG
Sbjct: 120 CWVCG 124


>sp|SYI_PYRAE|ISOLEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 CWNCG 5
CW CG
Sbjct: 402 CWRCG 406


>sp|TOP1_ARCFU|DNA topoisomerase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 WNCGCEW 8
WN GC +
Sbjct: 646 WNLGCPY 652


>sp|Y832_METJA|UNCHARACTERIZED protein MJ0832|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CWNCGCE 7
C NCG E
Sbjct: 1710 CINCGSE 1716


>sp|Y800_METJA|UNCHARACTERIZED protein MJ0800|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 CGCEWN 9
CG EW+
Sbjct: 12 CGAEWS 17


>sp|HLY_HALMT|HALOLYSIN mediterranei (strain ATCC 33500

Query: 1 CWNCGCEWN 9
CW E+N
Sbjct: 333 CWTTSTEYN 341


>sp|HYPA_PYRFU|HYDROGENASE maturation factor HypA|Pyrococcus furiosus (strain ATCC 43587

Query: 1 CWNCGCEW 8
C NCG W
Sbjct: 73 CRNCGHVW 80


>sp|Y1650_METJA|UNCHARACTERIZED protein MJ1650|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CWNCGCE 7
C+ CG E
Sbjct: 22 CYRCGAE 28


>sp|RS5_PYRIL|SMALL ribosomal subunit protein uS5|Pyrobaculum islandicum (strain DSM

Query: 2 WNCGCE 7
W C C+
Sbjct: 120 WKCSCD 125


>sp|RS5_PYRCJ|SMALL ribosomal subunit protein uS5|Pyrobaculum calidifontis (strain DSM

Query: 2 WNCGCE 7
W C C+
Sbjct: 120 WKCSCD 125


>sp|RS5_PYRAR|SMALL ribosomal subunit protein uS5|Pyrobaculum arsenaticum (strain DSM

Query: 2 WNCGCE 7
W C C+
Sbjct: 120 WKCSCD 125


>sp|RS5_PYRAE|SMALL ribosomal subunit protein uS5|Pyrobaculum aerophilum (strain ATCC

Query: 2 WNCGCE 7
W C C+
Sbjct: 136 WKCSCD 141


>sp|SYM_ARCFU|METHIONINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 CWNCGCEWNR 10
C GC+W +
Sbjct: 261 CEEKGCDWRK 270


>sp|TMPS_METJA|THYMIDYLATE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CWNCGCEW 8
C+NC W
Sbjct: 50 CYNCRGNW 57


>sp|Y981_METJA|UNCHARACTERIZED protein MJ0981|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CWNCGCE 7
C NCG E
Sbjct: 11 CENCGFE 17


>sp|NPD1_PYRAE|NAD-DEPENDENT protein deacetylase 1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 CWNCGCEW 8
C NCG ++
Sbjct: 131 CTNCGSKY 138


>sp|PHR_HALSA|DEOXYRIBODIPYRIMIDINE photo-lyase|Halobacterium salinarum (strain ATCC 700922

Query: 2 WNCGCEWNR 10
W G +W R
Sbjct: 367 WRAGYDWFR 375


>sp|RNP4_ARCFU|RIBONUCLEASE P protein component 4|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 CWNCGCE 7
C NCG E
Sbjct: 87 CLNCGFE 93


>sp|Z0758_HALVD|ZINC finger mu-protein HVO_0758|Haloferax volcanii (strain ATCC 29605

Query: 1 CWNCGCEWN 9
C +CG EW
Sbjct: 45 CADCGREWK 53




91|Sequence|451|465|CEWNRVCMGDHWFDV

>sp|Y409_METJA|UNCHARACTERIZED protein MJ0409|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 WNRVCMGDHWF 13
WNR +HWF
Sbjct: 504 WNRYEYFNHWF 514


>sp|HIS8_METMJ|HISTIDINOL-PHOSPHATE aminotransferase|Methanoculleus marisnigri (strain ATCC 35101

Query: 5 RVCMGDHWFDV 15
RVC+G+ W ++
Sbjct: 333 RVCIGEDWENI 343


>sp|AHBD_METBF|ADOMET-DEPENDENT heme synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 CEWNRVCMG 9
CE+ +VC G
Sbjct: 315 CEYKKVCAG 323


>sp|TRPB_THEVO|TRYPTOPHAN synthase beta chain|Thermoplasma volcanium (strain ATCC 51530

Query: 8 MGDHWFDV 15
M DHW+++
Sbjct: 11 MPDHWYNI 18


>sp|TRPB_THEAC|TRYPTOPHAN synthase beta chain|Thermoplasma acidophilum (strain ATCC 25905

Query: 8 MGDHWFDV 15
M DHW+++
Sbjct: 11 MPDHWYNI 18


>sp|PSA2_HALVD|PROTEASOME subunit alpha 2|Haloferax volcanii (strain ATCC 29605

Query: 2 EWNRVCMGDHWFDV 15
EW V +G H DV
Sbjct: 160 EWKAVAIGGHREDV 173


>sp|GATD_ARCFU|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Archaeoglobus fulgidus (strain ATCC

Query: 1 CEWNRVC 7
C W RVC
Sbjct: 352 CLWGRVC 358


>sp|NOB1_METTH|ENDORIBONUCLEASE Nob1|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 WNRVCMG 9
W RVC G
Sbjct: 137 WRRVCTG 143


>sp|PGP_PICTO|PHOSPHOGLYCOLATE phosphatase|Picrophilus torridus (strain ATCC 700027

Query: 7 CMGDHWFDV 15
C GD FDV
Sbjct: 220 CYGDELFDV 228


>sp|NADK_THEGJ|NAD kinase|Thermococcus gammatolerans (strain DSM 15229

Query: 4 NRVCMGDHWFD 14
+R+ GD+W D
Sbjct: 107 SRLLEGDYWID 117


>sp|Y482_METM7|UPF0280 protein MmarC7_0482|Methanococcus maripaludis (strain C7 /

Query: 6 VCMGDH 11
VCMG+H
Sbjct: 216 VCMGEH 221


>sp|Y355_METM5|UPF0280 protein MmarC5_0355|Methanococcus maripaludis (strain C5 /

Query: 6 VCMGDH 11
VCMG+H
Sbjct: 216 VCMGEH 221


>sp|Y1236_METMP|UPF0280 protein MMP1236|Methanococcus maripaludis (strain DSM 14266

Query: 6 VCMGDH 11
VCMG+H
Sbjct: 216 VCMGEH 221


>sp|DHE3_THELN|GLUTAMATE dehydrogenase|Thermococcus litoralis (strain ATCC 51850

Query: 2 EWNRVCMGDHW 12
EW + GD+W
Sbjct: 354 EWVQNITGDYW 364


>sp|Y1311_METJA|UNCHARACTERIZED protein MJ1311|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 WNRVCMGDHWF 13
W VC G H+
Sbjct: 46 WEIVCEGTHYL 56


>sp|HIS81_ARCFU|HISTIDINOL-PHOSPHATE aminotransferase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 EWNRVCMG 9
EW R C+G
Sbjct: 229 EWMRSCVG 236


>sp|Y1283_METJA|UNCHARACTERIZED protein MJ1283|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 WNRVCMGDHW 12
W R+ + HW
Sbjct: 205 WQRMFLTTHW 214


>sp|CBID_ARCFU|COBALT-PRECORRIN-5B C(1)-methyltransferase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 9 GDHWFDV 15
GDH FDV
Sbjct: 94 GDHEFDV 100


>sp|Y1039_PYRHO|UNCHARACTERIZED ABC transporter extracellular-binding protein|Pyrococcus horikoshii

Query: 3 WNRVCMGDHW 12
W +V + D+W
Sbjct: 352 WKKVSIDDYW 361


>sp|ASSY_METKA|ARGININOSUCCINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 2 EWNRVCMGDHWFD 14
EW R+ WF+
Sbjct: 304 EWARLVYDGLWFN 316


>sp|AHBC_METBF|FE-COPROPORPHYRIN III synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 CEWNRVCMGD 10
C+W VC G+
Sbjct: 359 CKWLDVCNGN 368


>sp|GPMA_METVS|2,3-BISPHOSPHOGLYCERATE-DEPENDENT phosphoglycerate mutase|Methanococcus vannielii (strain ATCC

Query: 3 WNRVCMGDHWFDV 15
WN++ + W DV
Sbjct: 14 WNKMNIFTGWVDV 26


>sp|Y1498_SULAC|PARB-LIKE protein Saci_1498|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 EWNRVCMGD 10
EWNR+ D
Sbjct: 84 EWNRIIAPD 92


>sp|SYT_NATPD|THREONINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 EWNRVCMGDH 11
+W +C G H
Sbjct: 176 DWQDLCQGPH 185


>sp|Y1627_METJA|UPF0179 protein MJ1627|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CEWNRVCMGD 10
C++ R+C G+
Sbjct: 33 CKFKRLCHGN 42


>sp|Y996_METST|UPF0179 protein Msp_0996|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 CEWNRVCM 8
C +NR C+
Sbjct: 28 CRFNRTCL 35


>sp|SYR_SULAC|ARGININE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 10 DHWF 13
DHWF
Sbjct: 177 DHWF 180


>sp|SYR_KORCO|ARGININE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 10 DHWF 13
DHWF
Sbjct: 193 DHWF 196


>sp|RFCS_METKA|REPLICATION factor C small subunit|Methanopyrus kandleri (strain AV19 /

Query: 5 RVCMGDHWFD 14
R G+HW D
Sbjct: 66 RELFGEHWRD 75


>sp|CAS3_METJA|PUTATIVE CRISPR-associated nuclease/helicase Cas3|Methanocaldococcus

Query: 6 VCMGDHWFDV 15
+ G HW D+
Sbjct: 618 ILFGRHWTDI 627


>sp|Y405_HALVD|PROBABLE cell surface fusion protein|Haloferax volcanii (strain ATCC 29605

Query: 3 WNRVCMGDHWFDV 15
W+ V D W DV
Sbjct: 183 WSVVDADDRWADV 195


>sp|D89S1_PYRHO|DAMAGE-CONTROL phosphatase PH1575|Pyrococcus horikoshii (strain ATCC 700860

Query: 8 MGDHWFD 14
+G+H+FD
Sbjct: 158 VGEHYFD 164


>sp|RS5_ARCFU|SMALL ribosomal subunit protein uS5|Archaeoglobus fulgidus (strain ATCC

Query: 3 WNRVCMGDH 11
W C GDH
Sbjct: 116 WECGCGGDH 124


>sp|SYV_METMP|VALINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 6 VCMGDHWF 13
+ +GD WF
Sbjct: 350 IIVGDQWF 357




92|Sequence|456|465|VCMGDHWFDV

>sp|TRPB_THEVO|TRYPTOPHAN synthase beta chain|Thermoplasma volcanium (strain ATCC 51530

Query: 3 MGDHWFDV 10
M DHW+++
Sbjct: 11 MPDHWYNI 18


>sp|TRPB_THEAC|TRYPTOPHAN synthase beta chain|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 MGDHWFDV 10
M DHW+++
Sbjct: 11 MPDHWYNI 18


>sp|PGP_PICTO|PHOSPHOGLYCOLATE phosphatase|Picrophilus torridus (strain ATCC 700027

Query: 2 CMGDHWFDV 10
C GD FDV
Sbjct: 220 CYGDELFDV 228


>sp|Y482_METM7|UPF0280 protein MmarC7_0482|Methanococcus maripaludis (strain C7 /

Query: 1 VCMGDH 6
VCMG+H
Sbjct: 216 VCMGEH 221


>sp|Y355_METM5|UPF0280 protein MmarC5_0355|Methanococcus maripaludis (strain C5 /

Query: 1 VCMGDH 6
VCMG+H
Sbjct: 216 VCMGEH 221


>sp|Y1236_METMP|UPF0280 protein MMP1236|Methanococcus maripaludis (strain DSM 14266

Query: 1 VCMGDH 6
VCMG+H
Sbjct: 216 VCMGEH 221


>sp|CBID_ARCFU|COBALT-PRECORRIN-5B C(1)-methyltransferase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 GDHWFDV 10
GDH FDV
Sbjct: 94 GDHEFDV 100


>sp|HIS8_METMJ|HISTIDINOL-PHOSPHATE aminotransferase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 VCMGDHWFDV 10
VC+G+ W ++
Sbjct: 334 VCIGEDWENI 343


>sp|SYR_SULAC|ARGININE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 5 DHWF 8
DHWF
Sbjct: 177 DHWF 180


>sp|SYR_KORCO|ARGININE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 5 DHWF 8
DHWF
Sbjct: 193 DHWF 196


>sp|SYV_METMP|VALINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 VCMGDHWF 8
+ +GD WF
Sbjct: 350 IIVGDQWF 357


>sp|CAS3_METJA|PUTATIVE CRISPR-associated nuclease/helicase Cas3|Methanocaldococcus

Query: 1 VCMGDHWFDV 10
+ G HW D+
Sbjct: 618 ILFGRHWTDI 627


>sp|D89S1_PYRHO|DAMAGE-CONTROL phosphatase PH1575|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 MGDHWFD 9
+G+H+FD
Sbjct: 158 VGEHYFD 164


>sp|NADK_THEGJ|NAD kinase|Thermococcus gammatolerans (strain DSM 15229

Query: 4 GDHWFD 9
GD+W D
Sbjct: 112 GDYWID 117


>sp|GAPN_SACS2|NAD(P)-DEPENDENT glyceraldehyde-3-phosphate dehydrogenase|Saccharolobus

Query: 4 GDHWFDV 10
GD W DV
Sbjct: 37 GDEWQDV 43


>sp|RFCS_METKA|REPLICATION factor C small subunit|Methanopyrus kandleri (strain AV19 /

Query: 4 GDHWFD 9
G+HW D
Sbjct: 70 GEHWRD 75


>sp|Y1242_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 3 MGDHWFDV 10
+GD W D+
Sbjct: 353 VGDEWVDM 360


>sp|SPT4_THEKO|TRANSCRIPTION elongation factor Spt4|Thermococcus kodakarensis (strain ATCC

Query: 3 MGDHWFDV 10
+ D WFD+
Sbjct: 27 LSDDWFDL 34


>sp|NARG_HALMT|RESPIRATORY nitrate reductase subunit alpha|Haloferax mediterranei (strain ATCC

Query: 4 GDHW 7
GDHW
Sbjct: 777 GDHW 780






THE END