PLPL9_HUMAN Blast OutputR
Archaea
1|SequenceR|10|1|TNVLRGFFQM

>sp|DPOL_THEKO|DNA polymerase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 NVLRGFFQ 9
+VLRGFF+
Sbjct: 622 SVLRGFFE 629


>sp|DPOL_THEFM|DNA polymerase|Thermococcus fumicolans

Query: 2 NVLRGFFQ 9
+VLRGFF+
Sbjct: 622 SVLRGFFE 629


>sp|DPOL_THEAG|DNA polymerase|Thermococcus aggregans

Query: 3 VLRGFFQ 9
VLRGFF+
Sbjct: 626 VLRGFFE 632


>sp|IF2P_PYRHO|PROBABLE translation initiation factor IF-2|Pyrococcus horikoshii (strain

Query: 2 NVLRGFFQM 10
N LRGFF +
Sbjct: 224 NFLRGFFDI 232


>sp|DPOL_METJA|DNA polymerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 VLRGFFQ 9
+LRGFF+
Sbjct: 651 ILRGFFE 657




2|SequenceR|15|6|TVGSFTNVLR

>sp|CCA_THEAC|CCA-ADDING enzyme|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 GSFTNVLR 10
GSF NV+R
Sbjct: 186 GSFENVIR 193


>sp|CCA_THEVO|CCA-ADDING enzyme|Thermoplasma volcanium (strain ATCC 51530

Query: 3 GSFTNVLR 10
G+F NVLR
Sbjct: 186 GNFENVLR 193


>sp|EF2_KORCO|ELONGATION factor 2|Korarchaeum cryptofilum (strain OPF8)

Query: 1 TVGSFTNVLR 10
T+G F+N +R
Sbjct: 679 TLGGFSNEMR 688




3|SequenceR|20|11|NSFLNTVGSF

>sp|REG6_PYRAB|HTH-TYPE transcriptional regulator FL11|Pyrococcus abyssi (strain GE5 /

Query: 1 NSFLNTVGS 9
NSFL+ +GS
Sbjct: 118 NSFLDVIGS 126


>sp|DPCKG_METTH|GTP-DEPENDENT dephospho-CoA kinase|Methanothermobacter thermautotrophicus

Query: 1 NSFLNTVG 8
NSFL TVG
Sbjct: 30 NSFLITVG 37


>sp|REG6_PYRFU|HTH-TYPE transcriptional regulator FL11|Pyrococcus furiosus (strain ATCC

Query: 1 NSFLNTVGS 9
N+FL+ VGS
Sbjct: 118 NNFLDMVGS 126


>sp|SYM_METPE|METHIONINE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 NSFLNTVGSF 10
N +NT G+F
Sbjct: 378 NELVNTFGNF 387


>sp|SYM_METLZ|METHIONINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 NSFLNTVGSF 10
N +NT G+F
Sbjct: 377 NELVNTFGNF 386


>sp|PAN_METHJ|PROTEASOME-ACTIVATING nucleotidase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 FLNTVGS 9
FL+TVGS
Sbjct: 215 FLHTVGS 221


>sp|REG6_PYRHO|HTH-TYPE transcriptional regulator FL11|Pyrococcus horikoshii (strain ATCC

Query: 1 NSFLNTVGS 9
N+FL+ +GS
Sbjct: 118 NNFLDLIGS 126




4|SequenceR|25|16|KVRFPNSFLN

>sp|PCKG_THEAC|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 RFPNSFL 9
R+PNSFL
Sbjct: 59 RYPNSFL 65


>sp|RL2_SACS2|LARGE ribosomal subunit protein uL2|Saccharolobus solfataricus (strain

Query: 1 KVRFPNSF 8
KVR+PN F
Sbjct: 27 KVRYPNIF 34


>sp|RL2_SACI7|LARGE ribosomal subunit protein uL2|Saccharolobus islandicus (strain

Query: 1 KVRFPNSF 8
KVR+PN F
Sbjct: 27 KVRYPNIF 34


>sp|RL2_SACI6|LARGE ribosomal subunit protein uL2|Saccharolobus islandicus (strain

Query: 1 KVRFPNSF 8
KVR+PN F
Sbjct: 27 KVRYPNIF 34


>sp|RL2_SACI4|LARGE ribosomal subunit protein uL2|Saccharolobus islandicus (strain

Query: 1 KVRFPNSF 8
KVR+PN F
Sbjct: 27 KVRYPNIF 34


>sp|RL2_SACI3|LARGE ribosomal subunit protein uL2|Saccharolobus islandicus (strain

Query: 1 KVRFPNSF 8
KVR+PN F
Sbjct: 27 KVRYPNIF 34


>sp|RL2_SACI2|LARGE ribosomal subunit protein uL2|Saccharolobus islandicus (strain

Query: 1 KVRFPNSF 8
KVR+PN F
Sbjct: 27 KVRYPNIF 34


>sp|RL2_SACI1|LARGE ribosomal subunit protein uL2|Saccharolobus islandicus (strain

Query: 1 KVRFPNSF 8
KVR+PN F
Sbjct: 27 KVRYPNIF 34


>sp|PSTA_METJA|PROBABLE phosphate transport system permease|Methanocaldococcus jannaschii

Query: 4 FPNSFL 9
FPNSF+
Sbjct: 96 FPNSFI 101


>sp|COOS_METJA|CARBON monoxide dehydrogenase|Methanocaldococcus jannaschii (strain ATCC

Query: 3 RFPNSF 8
RFPN F
Sbjct: 29 RFPNQF 34


>sp|HTPX_THEVO|PROTEASE HtpX homolog|Thermoplasma volcanium (strain ATCC 51530

Query: 1 KVRFPNSF 8
+V FPN+F
Sbjct: 110 EVSFPNAF 117


>sp|SAV_SULAC|PROTEIN SAV|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 VRFPNSFL 9
+RF NSF+
Sbjct: 137 IRFDNSFV 144


>sp|CAS10_METJA|CRISPR system single-strand-specific deoxyribonuclease

Query: 1 KVRFPNSFLN 10
K +F N FLN
Sbjct: 44 KEKFKNGFLN 53


>sp|HTPX2_SULAC|PROTEASE HtpX homolog 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 VRFPNSF 8
V FPN+F
Sbjct: 97 VNFPNAF 103




5|SequenceR|30|21|AVAVEKVRFP

>sp|NFI_ARCFU|ENDONUCLEASE V|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 AVAVEKVRFP 10
AV VEKV FP
Sbjct: 64 AVRVEKVTFP 73


>sp|HIS82_ARCFU|HISTIDINOL-PHOSPHATE aminotransferase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 AVAVEKVRFP 10
A A+EKVR P
Sbjct: 225 AEAIEKVRLP 234


>sp|TRMY_PYRFU|TRNA (pseudouridine(54)-N(1))-methyltransferase|Pyrococcus furiosus

Query: 1 AVAVEKVRFP 10
V +EKV+FP
Sbjct: 138 GVDIEKVKFP 147


>sp|RL10E_METMA|LARGE ribosomal subunit protein uL16|Methanosarcina mazei (strain ATCC

Query: 2 VAVEKVRFP 10
VAVEK FP
Sbjct: 136 VAVEKQNFP 144


>sp|PUR2_ARCFU|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 AVEKVRFP 10
A+EK+ FP
Sbjct: 449 ALEKISFP 456




6|SequenceR|35|26|SSTYDAVAVE

>sp|DNLI2_HALWD|DNA ligase 2|Haloquadratum walsbyi (strain DSM 16790

Query: 3 TYDAVAVE 10
T+DAVA+E
Sbjct: 305 TWDAVAIE 312


>sp|FAU1_NATPD|PROBABLE ribonuclease FAU-1|Natronomonas pharaonis (strain ATCC 35678

Query: 1 SSTYDAVAVE 10
TYDA+ V+
Sbjct: 352 GGTYDAIGVK 361




7|SequenceR|40|31|ERVRDSSTYD

>sp|AATE2_METHJ|A-TYPE ATP synthase subunit E|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 ERVRDSSTYD 10
ER+RD+ST +
Sbjct: 177 ERIRDTSTLE 186


>sp|THIM_PYRFU|HYDROXYETHYLTHIAZOLE kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 5 DSSTYD 10
DSSTYD
Sbjct: 138 DSSTYD 143


>sp|RNZ_THEVO|RIBONUCLEASE Z|Thermoplasma volcanium (strain ATCC 51530

Query: 1 ERVRDSSTYD 10
E++RD+ TY+
Sbjct: 174 EKIRDNGTYE 183


>sp|UPPS_HALSA|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Halobacterium

Query: 1 ERVRDSSTY 9
+RVRD+ TY
Sbjct: 127 QRVRDAITY 135


>sp|KDXD_HALVD|PROBABLE 2-keto-3-deoxyxylonate dehydratase|Haloferax volcanii (strain

Query: 4 RDSSTYD 10
RDS+TYD
Sbjct: 18 RDSTTYD 24


>sp|RL30_KORCO|LARGE ribosomal subunit protein uL30|Korarchaeum cryptofilum (strain

Query: 2 RVRDSSTY 9
RV+D STY
Sbjct: 55 RVKDYSTY 62


>sp|CIMA_METMJ|PUTATIVE (R)-citramalate synthase CimA|Methanoculleus marisnigri (strain

Query: 3 VRDSSTYD 10
+RD+STY+
Sbjct: 295 MRDASTYE 302


>sp|AROC_HALLT|CHORISMATE synthase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 ERVRDSSTYD 10
E+V D+S YD
Sbjct: 142 EQVLDASEYD 151




8|SequenceR|45|36|ILQGEERVRD

>sp|Y101_ARCFU|UNCHARACTERIZED protein AF_0101|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ILQGEERVR 9
+ +GEERVR
Sbjct: 203 LAEGEERVR 211


>sp|NADM_SULTO|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 LQGEERVRD 10
++G+ER+RD
Sbjct: 158 IKGDERLRD 166


>sp|NADM1_SULAC|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 LQGEERVRD 10
++G+ER+RD
Sbjct: 158 IKGDERIRD 166


>sp|MDH_PYRAE|MALATE dehydrogenase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 ILQGEERVRD 10
+LQGE VRD
Sbjct: 250 VLQGEYGVRD 259


>sp|MDH_PYRIL|MALATE dehydrogenase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 ILQGEERVRD 10
+LQGE VRD
Sbjct: 250 VLQGEYDVRD 259


>sp|RL18_AERPE|LARGE ribosomal subunit protein uL18|Aeropyrum pernix (strain ATCC 700893

Query: 1 ILQGEERVR 9
IL G+ERVR
Sbjct: 137 ILPGDERVR 145


>sp|HDRD_METBF|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina barkeri (strain

Query: 1 ILQGEERVRD 10
+ GE RV+D
Sbjct: 351 VAMGESRVKD 360


>sp|ADEC_METTP|ADENINE deaminase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 ILQGEERVRD 10
I +GEE RD
Sbjct: 337 IFEGEEVARD 346


>sp|RL30_METB6|LARGE ribosomal subunit protein uL30|Methanoregula boonei (strain DSM

Query: 1 ILQGEERVRD 10
+ +GE R+RD
Sbjct: 100 LAKGESRLRD 109


>sp|GCH1L_ARCFU|GTP cyclohydrolase 1 type 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 GEERVR 9
GEERVR
Sbjct: 159 GEERVR 164




9|SequenceR|50|41|TNQFLILQGE

>sp|SYT_META3|THREONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 NQFLILQGE 10
N+F IL GE
Sbjct: 155 NKFYILDGE 163




10|SequenceR|55|46|WTRNPTNQFL

>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 WTRNP 5
WTRNP
Sbjct: 29 WTRNP 33


>sp|FDHA_METFO|F420-DEPENDENT formate dehydrogenase subunit alpha|Methanobacterium formicicum

Query: 1 WTRNPTNQ 8
W R+P N+
Sbjct: 34 WKRHPVNE 41


>sp|AATB_METVS|A-TYPE ATP synthase subunit B|Methanococcus vannielii (strain ATCC 35089

Query: 2 TRNPTNQFL 10
+RNP N F+
Sbjct: 125 SRNPPNAFV 133


>sp|AATB_METMP|A-TYPE ATP synthase subunit B|Methanococcus maripaludis (strain DSM 14266

Query: 2 TRNPTNQFL 10
+RNP N F+
Sbjct: 125 SRNPPNAFV 133


>sp|AATB_METM7|A-TYPE ATP synthase subunit B|Methanococcus maripaludis (strain C7 /

Query: 2 TRNPTNQFL 10
+RNP N F+
Sbjct: 125 SRNPPNAFV 133


>sp|AATB_METM6|A-TYPE ATP synthase subunit B|Methanococcus maripaludis (strain C6 /

Query: 2 TRNPTNQFL 10
+RNP N F+
Sbjct: 125 SRNPPNAFV 133


>sp|AATB_METM5|A-TYPE ATP synthase subunit B|Methanococcus maripaludis (strain C5 /

Query: 2 TRNPTNQFL 10
+RNP N F+
Sbjct: 125 SRNPPNAFV 133


>sp|ASSY_HALMA|ARGININOSUCCINATE synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 WTRNPTNQ 8
WT NP+++
Sbjct: 203 WTDNPSDK 210


>sp|CATA_METBF|CATALASE barkeri (strain Fusaro /

Query: 3 RNPTNQF 9
RNPTN F
Sbjct: 303 RNPTNYF 309


>sp|ASSY_METJA|ARGININOSUCCINATE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 WTRNP 5
WT+NP
Sbjct: 202 WTKNP 206


>sp|AATB_METTL|A-TYPE ATP synthase subunit B|Methanothermococcus thermolithotrophicus

Query: 2 TRNPTNQFL 10
+RNP N F+
Sbjct: 57 SRNPPNAFV 65


>sp|RL15E_METS5|LARGE ribosomal subunit protein eL15|Metallosphaera sedula (strain ATCC

Query: 1 WTRNPTNQ 8
W +NP N+
Sbjct: 148 WLKNPANR 155


>sp|HMU_HALWD|HALOMUCIN walsbyi (strain DSM 16790

Query: 1 WTRNPTNQ 8
W R TNQ
Sbjct: 2649 WDRGATNQ 2656


>sp|YPV2_METTF|UNCHARACTERIZED protein ORF2|Methanothermobacter thermautotrophicus

Query: 1 WTRNPTN 7
WT NP N
Sbjct: 259 WTPNPAN 265




11|SequenceR|60|51|VLVCDWTRNP

>sp|MTTB2_METAC|TRIMETHYLAMINE methyltransferase MttB2|Methanosarcina acetivorans (strain ATCC

Query: 3 VCDWTRN 9
+CDWT N
Sbjct: 139 LCDWTEN 145


>sp|COFG_METM5|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanococcus maripaludis (strain C5 /

Query: 3 VCDWTRN 9
VC+W RN
Sbjct: 45 VCNWCRN 51


>sp|COFG_METMP|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanococcus maripaludis (strain DSM 14266

Query: 3 VCDWTRN 9
VC+W RN
Sbjct: 23 VCNWCRN 29


>sp|COFG_METM6|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanococcus maripaludis (strain C6 /

Query: 3 VCDWTRN 9
VC+W RN
Sbjct: 45 VCNWCRN 51


>sp|COFG_METM7|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanococcus maripaludis (strain C7 /

Query: 3 VCDWTRN 9
VC+W RN
Sbjct: 45 VCNWCRN 51


>sp|COFG_METVS|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanococcus vannielii (strain ATCC 35089

Query: 3 VCDWTRN 9
VC+W RN
Sbjct: 45 VCNWCRN 51


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 6 WTRNP 10
WTRNP
Sbjct: 29 WTRNP 33


>sp|MTTB_METBU|TRIMETHYLAMINE methyltransferase MttB|Methanococcoides burtonii (strain DSM 6242

Query: 3 VCDWTRN 9
VCDW N
Sbjct: 140 VCDWADN 146


>sp|RS15_ARCFU|SMALL ribosomal subunit protein uS15|Archaeoglobus fulgidus (strain ATCC

Query: 1 VLVCDWTRNP 10
VL DW NP
Sbjct: 134 VLPADWKYNP 143


>sp|MTTB_METTE|TRIMETHYLAMINE methyltransferase MttB|Methanosarcina thermophila

Query: 3 VCDWTRN 9
+CDW N
Sbjct: 139 LCDWAEN 145


>sp|MTTB_METBF|TRIMETHYLAMINE methyltransferase MttB|Methanosarcina barkeri (strain Fusaro /

Query: 3 VCDWTRN 9
+CDW N
Sbjct: 139 LCDWAEN 145


>sp|MTTB_METBA|TRIMETHYLAMINE methyltransferase MttB|Methanosarcina barkeri

Query: 3 VCDWTRN 9
+CDW N
Sbjct: 139 LCDWAEN 145


>sp|MTTB2_METMA|TRIMETHYLAMINE methyltransferase MttB2|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 VCDWTRN 9
+CDW N
Sbjct: 139 LCDWAEN 145


>sp|MTTB1_METMA|TRIMETHYLAMINE methyltransferase MttB1|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 VCDWTRN 9
+CDW N
Sbjct: 139 LCDWAEN 145


>sp|MTTB1_METAC|TRIMETHYLAMINE methyltransferase MttB1|Methanosarcina acetivorans (strain ATCC

Query: 3 VCDWTRN 9
+CDW N
Sbjct: 139 LCDWAEN 145


>sp|RNP4_SACS2|RIBONUCLEASE P protein component 4|Saccharolobus solfataricus (strain ATCC

Query: 2 LVCDWTR 8
L+C+W R
Sbjct: 84 LICNWQR 90


>sp|Y3936_METAC|UPF0060 membrane protein MA_3936|Methanosarcina acetivorans (strain ATCC

Query: 2 LVCDWTRN 9
L+C W RN
Sbjct: 24 LICLWLRN 31


>sp|RNP4_SACI7|RIBONUCLEASE P protein component 4|Saccharolobus islandicus (strain Y.G.57.14

Query: 2 LVCDWTR 8
L+C+W R
Sbjct: 84 LICNWQR 90


>sp|RNP4_SACI2|RIBONUCLEASE P protein component 4|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 LVCDWTR 8
L+C+W R
Sbjct: 84 LICNWQR 90


>sp|RNP4_SACI1|RIBONUCLEASE P protein component 4|Saccharolobus islandicus (strain Y.N.15.51

Query: 2 LVCDWTR 8
L+C+W R
Sbjct: 84 LICNWQR 90


>sp|RNP4_SACI6|RIBONUCLEASE P protein component 4|Saccharolobus islandicus (strain M.16.4 /

Query: 2 LVCDWTR 8
L+C+W R
Sbjct: 84 LICNWQR 90


>sp|RNP4_SACI4|RIBONUCLEASE P protein component 4|Saccharolobus islandicus (strain M.14.25 /

Query: 2 LVCDWTR 8
L+C+W R
Sbjct: 84 LICNWQR 90


>sp|ASSY_METJA|ARGININOSUCCINATE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 6 WTRNP 10
WT+NP
Sbjct: 202 WTKNP 206


>sp|RL18_HALWD|LARGE ribosomal subunit protein uL18|Haloquadratum walsbyi (strain DSM

Query: 2 LVCDWTRN 9
++ DW+RN
Sbjct: 136 VLADWSRN 143


>sp|RNP4_SACI3|RIBONUCLEASE P protein component 4|Saccharolobus islandicus (strain M.16.27)

Query: 2 LVCDWTR 8
L+C+W R
Sbjct: 84 LICNWQR 90


>sp|RNP4_SULTO|RIBONUCLEASE P protein component 4|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 LVCDWTR 8
L C WTR
Sbjct: 87 LYCGWTR 93


>sp|PURL_IGNH4|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Ignicoccus hospitalis (strain KIN4/I /

Query: 5 DWTRNP 10
D+TRNP
Sbjct: 156 DFTRNP 161


>sp|DP2L_NATPD|DNA polymerase II large subunit|Natronomonas pharaonis (strain ATCC

Query: 1 VLVCDWTR 8
VLV D+TR
Sbjct: 157 VLVADYTR 164


>sp|COFG_META3|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 VCDWTRN 9
+C+W +N
Sbjct: 50 ICNWCKN 56




12|SequenceR|65|56|SNRPNVLVCD

>sp|UDGA_ARCFU|TYPE-4 uracil-DNA glycosylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 RPNVLVC 9
RPNV+VC
Sbjct: 113 RPNVIVC 119


>sp|RLME_METVS|RIBOSOMAL RNA large subunit methyltransferase|Methanococcus vannielii (strain

Query: 3 RPNVLVCD 10
+P+V++CD
Sbjct: 113 KPDVIICD 120


>sp|RLME_METMP|RIBOSOMAL RNA large subunit methyltransferase|Methanococcus maripaludis

Query: 3 RPNVLVCD 10
+P+V++CD
Sbjct: 113 KPDVIICD 120


>sp|RLME_METM7|RIBOSOMAL RNA large subunit methyltransferase|Methanococcus maripaludis

Query: 3 RPNVLVCD 10
+P+V++CD
Sbjct: 113 KPDVIICD 120


>sp|RLME_METM6|RIBOSOMAL RNA large subunit methyltransferase|Methanococcus maripaludis

Query: 3 RPNVLVCD 10
+P+V++CD
Sbjct: 113 KPDVIICD 120


>sp|RLME_METM5|RIBOSOMAL RNA large subunit methyltransferase|Methanococcus maripaludis

Query: 3 RPNVLVCD 10
+P+V++CD
Sbjct: 113 KPDVIICD 120


>sp|PYRG_META3|CTP synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 RPNVLVC 9
+PN+LVC
Sbjct: 202 QPNILVC 208


>sp|ADEC_METTP|ADENINE deaminase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 NRPNVLVC 9
N PN+++C
Sbjct: 258 NTPNIMLC 265


>sp|GLYA_METBF|SERINE hydroxymethyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 2 NRPNVLVC 9
N+P ++VC
Sbjct: 162 NKPQMIVC 169


>sp|KORC_METJA|2-OXOGLUTARATE synthase subunit KorC|Methanocaldococcus jannaschii (strain ATCC

Query: 3 RPNVLVC 9
+P++LVC
Sbjct: 74 KPDILVC 80


>sp|Y1466_METJA|UNCHARACTERIZED protein MJ1466|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SNRPNVLV 8
SN+P +LV
Sbjct: 134 SNKPKILV 141


>sp|Y017_METJA|UNCHARACTERIZED protein MJ0017|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SNRPNVLV 8
SN+P +LV
Sbjct: 134 SNKPKILV 141


>sp|RLME_METLZ|RIBOSOMAL RNA large subunit methyltransferase|Methanocorpusculum labreanum

Query: 5 NVLVCD 10
NV+VCD
Sbjct: 103 NVVVCD 108




13|SequenceR|70|61|RFGSQSNRPN

>sp|DNLI_CENSY|DNA ligase|Cenarchaeum symbiosum (strain A)

Query: 3 GSQSNRP 9
GS+SNRP
Sbjct: 181 GSKSNRP 187


>sp|AROC_PYRCJ|CHORISMATE synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 FGSQSNRP 9
FGS++N P
Sbjct: 257 FGSEANDP 264




14|SequenceR|75|66|ELQFLRFGSQ

>sp|SYE_NITMS|GLUTAMATE--TRNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 ELQFLRFG 8
E+QF+RFG
Sbjct: 547 EIQFVRFG 554


>sp|SYE_SULTO|GLUTAMATE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 LQFLRFG 8
+QF+RFG
Sbjct: 541 VQFIRFG 547


>sp|SYE_CENSY|GLUTAMATE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 2 LQFLRFG 8
+QF+RFG
Sbjct: 541 IQFVRFG 547


>sp|NADK_METKA|NAD kinase|Methanopyrus kandleri (strain AV19 /

Query: 3 QFLRFGS 9
+F+RFGS
Sbjct: 256 RFIRFGS 262


>sp|PDXS_THEAC|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermoplasma acidophilum

Query: 1 ELQFLRFGSQ 10
+L LRFGS+
Sbjct: 4 DLNKLRFGSE 13


>sp|SYE_AERPE|GLUTAMATE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 LQFLRFG 8
LQF+R+G
Sbjct: 549 LQFVRYG 555




15|SequenceR|80|71|ADAELELQFL

>sp|GLMS_SULTO|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Sulfurisphaera tokodaii (strain DSM

Query: 1 ADAELELQ 8
AD E+ELQ
Sbjct: 542 ADVEIELQ 549




16|SequenceR|85|76|HFNVLADAEL

>sp|TRPF_SULAC|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 FNVLADAEL 10
FNVL D+E+
Sbjct: 118 FNVLVDSEI 126


>sp|TMCA_THEKO|TRNA(MET) cytidine acetyltransferase TmcA|Thermococcus kodakarensis (strain

Query: 1 HFNVLADAEL 10
HF+VLA +E+
Sbjct: 113 HFDVLAGSEV 122


>sp|RUXX_THEKO|PUTATIVE snRNP Sm-like protein|Thermococcus kodakarensis (strain ATCC

Query: 1 HFNV-LADAEL 10
H NV LADAEL
Sbjct: 37 HLNVVLADAEL 47


>sp|Y2143_SULTO|UPF0284 protein STK_21430|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 HFNVLADAEL 10
HF ADAE
Sbjct: 46 HFTPAADAEF 55


>sp|Y020_SULAC|UPF0284 protein Saci_0020|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 HFNVLADAEL 10
HF ADAE
Sbjct: 45 HFTPAADAEF 54


>sp|HYPA_METBF|HYDROGENASE maturation factor HypA|Methanosarcina barkeri (strain Fusaro /

Query: 2 FNVLADAEL 10
FNVLAD +
Sbjct: 48 FNVLADESI 56


>sp|Y2213_SACS2|UPF0284 protein SSO2213|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 HFNVLADAE 9
HF ADAE
Sbjct: 45 HFTPAADAE 53


>sp|Y030_SACI7|UPF0284 protein YG5714_0030|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 HFNVLADAE 9
HF ADAE
Sbjct: 45 HFTPAADAE 53


>sp|Y030_SACI6|UPF0284 protein M164_0030|Saccharolobus islandicus (strain M.16.4 /

Query: 1 HFNVLADAE 9
HF ADAE
Sbjct: 45 HFTPAADAE 53


>sp|Y030_SACI4|UPF0284 protein M1425_0030|Saccharolobus islandicus (strain M.14.25 /

Query: 1 HFNVLADAE 9
HF ADAE
Sbjct: 45 HFTPAADAE 53


>sp|Y030_SACI3|UPF0284 protein M1627_0030|Saccharolobus islandicus (strain M.16.27)

Query: 1 HFNVLADAE 9
HF ADAE
Sbjct: 45 HFTPAADAE 53


>sp|Y030_SACI2|UPF0284 protein LS215_0030|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 HFNVLADAE 9
HF ADAE
Sbjct: 45 HFTPAADAE 53


>sp|Y030_SACI1|UPF0284 protein YN1551_0030|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 HFNVLADAE 9
HF ADAE
Sbjct: 45 HFTPAADAE 53


>sp|HEM11_PYRAR|GLUTAMYL-TRNA reductase 1|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 FNVLADAEL 10
FN + DAE+
Sbjct: 283 FNAMRDAEI 291


>sp|RSMA_METKA|PROBABLE ribosomal RNA small subunit|Methanopyrus kandleri (strain AV19 /

Query: 3 NVLADAEL 10
N+LAD EL
Sbjct: 164 NLLADVEL 171




17|SequenceR|90|81|QSSYQHFNVL

>sp|UVRC_METBU|UVRABC system protein C|Methanococcoides burtonii (strain DSM 6242

Query: 2 SSYQHFNV 9
S Y+HFN+
Sbjct: 419 SKYRHFNI 426


>sp|TRPD_METMP|ANTHRANILATE phosphoribosyltransferase|Methanococcus maripaludis (strain DSM

Query: 1 QSSYQHFNVL 10
+ SY+ FNVL
Sbjct: 14 EESYELFNVL 23


>sp|LYSJ_SACS2|[LYSW]-AMINOADIPATE semialdehyde/glutamate semialdehyde transaminase|Saccharolobus

Query: 3 SYQHFNV 9
+YQHF++
Sbjct: 222 AYQHFDI 228


>sp|LYSJ_SULAC|[LYSW]-AMINOADIPATE semialdehyde/glutamate semialdehyde transaminase|Sulfolobus

Query: 3 SYQHFNVL 10
+Y+H+N++
Sbjct: 221 AYKHYNIV 228




18|SequenceR|95|86|YFPLLQSSYQ

>sp|IF2B_NANEQ|TRANSLATION initiation factor 2 subunit|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 YFPLLQSSYQ 10
YF LL+ +YQ
Sbjct: 5 YFELLERAYQ 14


>sp|AATC_METMA|A-TYPE ATP synthase subunit C|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 YFPLLQ 6
Y+PLLQ
Sbjct: 174 YYPLLQ 179


>sp|AATC_METBF|A-TYPE ATP synthase subunit C|Methanosarcina barkeri (strain Fusaro /

Query: 1 YFPLLQ 6
Y+PLLQ
Sbjct: 174 YYPLLQ 179


>sp|AATC_METAC|A-TYPE ATP synthase subunit C|Methanosarcina acetivorans (strain ATCC

Query: 1 YFPLLQ 6
Y+PLLQ
Sbjct: 174 YYPLLQ 179




19|SequenceR|100|91|QPSSEYFPLL

>sp|AATE_THEON|A-TYPE ATP synthase subunit E|Thermococcus onnurineus (strain NA1)

Query: 2 PSSEYFPLL 10
P EYFP+L
Sbjct: 98 PEEEYFPML 106


>sp|AATE_DESSY|A-TYPE ATP synthase subunit E|Desulfurococcus sp. (strain SY)

Query: 2 PSSEYFPLL 10
P EYFP+L
Sbjct: 98 PEDEYFPML 106


>sp|AATC_METBF|A-TYPE ATP synthase subunit C|Methanosarcina barkeri (strain Fusaro /

Query: 4 SEYFPLL 10
SEY+PLL
Sbjct: 172 SEYYPLL 178


>sp|PSB2_SULAC|PROTEASOME subunit beta 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 SSEYFPLL 10
SS+YFP L
Sbjct: 99 SSKYFPYL 106


>sp|AMPPA_METJA|AMP phosphorylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 SSEYFP 8
SS+YFP
Sbjct: 26 SSQYFP 31


>sp|DP2L_METM7|DNA polymerase II large subunit|Methanococcus maripaludis (strain C7 /

Query: 5 EYFPLL 10
EY+PLL
Sbjct: 558 EYYPLL 563


>sp|AATC_METMA|A-TYPE ATP synthase subunit C|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 SEYFPLL 10
+EY+PLL
Sbjct: 172 TEYYPLL 178


>sp|DP2L_METM6|DNA polymerase II large subunit|Methanococcus maripaludis (strain C6 /

Query: 5 EYFPLL 10
EY+PLL
Sbjct: 558 EYYPLL 563


>sp|DP2L_METM5|DNA polymerase II large subunit|Methanococcus maripaludis (strain C5 /

Query: 5 EYFPLL 10
EY+PLL
Sbjct: 558 EYYPLL 563


>sp|DP2L_METVS|DNA polymerase II large subunit|Methanococcus vannielii (strain ATCC

Query: 5 EYFPLL 10
EY+PLL
Sbjct: 558 EYYPLL 563


>sp|VORB_METTM|KETOISOVALERATE oxidoreductase subunit VorB|Methanothermobacter marburgensis

Query: 3 SSEYFPLL 10
+S YFPL+
Sbjct: 39 ASRYFPLV 46


>sp|DP2L_METJA|DNA polymerase II large subunit|Methanocaldococcus jannaschii (strain

Query: 5 EYFPLL 10
EY+PLL
Sbjct: 563 EYYPLL 568


>sp|NADA_SACS2|QUINOLINATE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 PSSEYFPLL 10
PS +++PL+
Sbjct: 250 PSKKFYPLV 258




20|SequenceR|105|96|ETHLVQPSSE

>sp|HDRB2_METAC|FERREDOXIN/F(420)H(2)-DEPENDENT CoB-CoM heterodisulfide reductase subunit|Methanosarcina

Query: 3 HLVQPSSE 10
HL++PS E
Sbjct: 155 HLIKPSKE 162


>sp|UVRB_HALMA|UVRABC system protein B|Haloarcula marismortui (strain ATCC 43049

Query: 2 THLVQPSSE 10
THLV P+ E
Sbjct: 428 THLVDPAVE 436


>sp|SYK_METMJ|LYSINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 ETHLVQPS 8
E HL+QP+
Sbjct: 369 EKHLIQPT 376


>sp|AGLF_HALVD|UTP--GLUCOSE-1-PHOSPHATE uridylyltransferase AglF|Haloferax volcanii (strain ATCC 29605

Query: 3 HLVQPSS 9
HLVQPS+
Sbjct: 183 HLVQPSN 189




21|SequenceR|110|101|LHQLVETHLV

>sp|PGK_METBR|PHOSPHOGLYCERATE kinase|Methanobacterium bryantii

Query: 2 HQLVETHLV 10
HQ ETH+V
Sbjct: 132 HQQAETHMV 140


>sp|Y781_METJA|UNCHARACTERIZED protein MJ0781|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 HQLVETHLV 10
HQ+ ET++V
Sbjct: 200 HQMCETNIV 208


>sp|LHRC_METTH|ATP-DEPENDENT helicase Lhr-Core|Methanothermobacter thermautotrophicus (strain

Query: 1 LHQLVETH 8
LH L+E H
Sbjct: 274 LHDLIEDH 281


>sp|PUR7_PYRAE|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 LHQLVETHLV 10
L ++VETH V
Sbjct: 56 LSRVVETHFV 65




22|SequenceR|115|106|RILDTLHQLV

>sp|TRM1_THEGJ|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermococcus gammatolerans

Query: 1 RILDTLHQL 9
R+++TLH L
Sbjct: 341 RVIETLHSL 349


>sp|CMR6_SACS2|CRISPR system CMR subunit Cmr6|Saccharolobus solfataricus (strain ATCC

Query: 1 RILDTLHQ 8
RILDTL++
Sbjct: 11 RILDTLNR 18


>sp|Y1662_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 1 RILDTLHQLV 10
+I+D L+QL+
Sbjct: 383 KIVDALYQLI 392




23|SequenceR|120|111|WSPHNRILDT

>sp|GLNA_ARCFU|GLUTAMINE synthetase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 WSPHNR 6
WSP NR
Sbjct: 357 WSPRNR 362


>sp|PURT_METJA|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanocaldococcus

Query: 1 WSPHN 5
W PHN
Sbjct: 233 WQPHN 237


>sp|AATB_STAMF|A-TYPE ATP synthase subunit B|Staphylothermus marinus (strain ATCC 43588

Query: 3 PHNRI 7
PHNRI
Sbjct: 162 PHNRI 166


>sp|ATGT_METST|TRNA-GUANINE(15) transglycosylase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 PHNRIL 8
PHNR++
Sbjct: 595 PHNRVV 600


>sp|RAD50_NANEQ|DNA double-strand break repair Rad50|Nanoarchaeum equitans (strain

Query: 4 HNRILDT 10
HN +LDT
Sbjct: 772 HNELLDT 778


>sp|QUEE_METTH|7-CARBOXY-7-DEAZAGUANINE synthase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 SPHNRILDT 10
SPH +L+T
Sbjct: 96 SPHRTLLET 104


>sp|HEMH_THEAC|FERROCHELATASE acidophilum (strain ATCC 25905

Query: 2 SPHNRILDT 10
SP NRI+++
Sbjct: 51 SPSNRIIES 59


>sp|KCY_METHJ|CYTIDYLATE kinase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 SPHNRILDT 10
SP++ +LDT
Sbjct: 147 SPYHLVLDT 155




24|SequenceR|125|116|LHAVSWSPHN

>sp|PURT_METJA|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanocaldococcus

Query: 5 SWSPHN 10
SW PHN
Sbjct: 232 SWQPHN 237


>sp|ADEC_METKA|ADENINE deaminase|Methanopyrus kandleri (strain AV19 /

Query: 3 AVSWSPH 9
AV W PH
Sbjct: 132 AVVWDPH 138


>sp|Y3534_METJA|UNCHARACTERIZED protein MJECL34|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 SWSPHN 10
SW PHN
Sbjct: 24 SWIPHN 29


>sp|PURT_HALWD|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Haloquadratum walsbyi

Query: 2 HAVSWSPHN 10
+ SW PH+
Sbjct: 235 YRTSWQPHS 243


>sp|AROA_METMJ|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanoculleus marisnigri (strain ATCC

Query: 1 LHAVSWSPHN 10
LH V+ PH+
Sbjct: 370 LHGVAVDPHD 379


>sp|SYK_METBF|LYSINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 3 AVSWSPHN 10
A WSP N
Sbjct: 163 AADWSPFN 170


>sp|SYL_IGNH4|LEUCINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 HAVSWSP 8
H V+W P
Sbjct: 232 HPVAWDP 238


>sp|PURT_METVS|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanococcus vannielii

Query: 5 SWSPH 9
SW PH
Sbjct: 231 SWQPH 235


>sp|PURT_METMP|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanococcus

Query: 5 SWSPH 9
SW PH
Sbjct: 231 SWQPH 235


>sp|PURT_METM7|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanococcus

Query: 5 SWSPH 9
SW PH
Sbjct: 231 SWQPH 235


>sp|PURT_METM5|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanococcus

Query: 5 SWSPH 9
SW PH
Sbjct: 231 SWQPH 235


>sp|PURT_META3|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanococcus aeolicus

Query: 5 SWSPH 9
SW PH
Sbjct: 234 SWQPH 238


>sp|SYL_METBU|LEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 HAVSWSPHN 10
H V W P++
Sbjct: 177 HPVKWCPND 185


>sp|SYL_METAC|LEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 HAVSWSPHN 10
H V W P++
Sbjct: 177 HPVKWCPND 185


>sp|SYL_METBF|LEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 HAVSWSPHN 10
H V W P++
Sbjct: 177 HPVKWCPND 185


>sp|SYL_METMA|LEUCINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 HAVSWSPHN 10
H V W P++
Sbjct: 177 HPVKWCPND 185


>sp|P538_METTH|PROTEIN MTH_538|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 VSWSPH 9
V W+PH
Sbjct: 93 VGWNPH 98


>sp|AROC_IGNH4|CHORISMATE synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 4 VSWSPH 9
V W PH
Sbjct: 362 VEWGPH 367


>sp|MBD_THEAC|MEVALONATE 3,5-bisphosphate decarboxylase|Thermoplasma acidophilum (strain

Query: 2 HAVSWSPHN 10
H+VSW N
Sbjct: 8 HSVSWISSN 16


>sp|GLNA_ARCFU|GLUTAMINE synthetase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 VSWSPHN 10
+ WSP N
Sbjct: 355 ICWSPRN 361


>sp|SYV_METTH|VALINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 LHAVSWSP 8
+H V+W P
Sbjct: 170 VHPVNWCP 177




25|SequenceR|130|121|GLEVALHAVS

>sp|TRPB1_THEKO|TRYPTOPHAN synthase beta chain 1|Thermococcus kodakarensis (strain ATCC

Query: 1 GLEVALHAVS 10
GLE LHA S
Sbjct: 258 GLETGLHAAS 267


>sp|XAD_HALVD|D-XYLONATE dehydratase|Haloferax volcanii (strain ATCC 29605

Query: 1 GLEVALHAVS 10
G+E+ALH V+
Sbjct: 121 GIEIALHDVA 130


>sp|MOAA_SACS2|PROBABLE GTP 3',8-cyclase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 LEVALHAVS 10
+ ++LHAVS
Sbjct: 111 INISLHAVS 119


>sp|MOAA_SACI7|PROBABLE GTP 3',8-cyclase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 LEVALHAVS 10
+ V+LHA+S
Sbjct: 111 INVSLHAIS 119


>sp|MOAA_SACI6|PROBABLE GTP 3',8-cyclase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 LEVALHAVS 10
+ V+LHA+S
Sbjct: 111 INVSLHAIS 119


>sp|MOAA_SACI4|PROBABLE GTP 3',8-cyclase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 LEVALHAVS 10
+ V+LHA+S
Sbjct: 111 INVSLHAIS 119


>sp|MOAA_SACI3|PROBABLE GTP 3',8-cyclase|Saccharolobus islandicus (strain M.16.27)

Query: 2 LEVALHAVS 10
+ V+LHA+S
Sbjct: 111 INVSLHAIS 119


>sp|MOAA_SACI2|PROBABLE GTP 3',8-cyclase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 LEVALHAVS 10
+ V+LHA+S
Sbjct: 111 INVSLHAIS 119


>sp|MOAA_SACI1|PROBABLE GTP 3',8-cyclase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 LEVALHAVS 10
+ V+LHA+S
Sbjct: 111 INVSLHAIS 119




26|SequenceR|135|126|FCERIGLEVA

>sp|RS8_META3|SMALL ribosomal subunit protein uS8|Methanococcus aeolicus (strain ATCC

Query: 2 CERIGLEVA 10
CER+G +VA
Sbjct: 17 CERVGKDVA 25


>sp|NIFH1_METTM|NITROGENASE iron protein 1|Methanothermobacter marburgensis (strain ATCC

Query: 1 FCERIGLEV 9
FCERIG ++
Sbjct: 199 FCERIGTQM 207


>sp|NIFH1_METTH|NITROGENASE iron protein 1|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 FCERIGLEV 9
FCERIG ++
Sbjct: 199 FCERIGTQM 207


>sp|ACKA_METTE|ACETATE kinase|Methanosarcina thermophila

Query: 1 FCERIGLE 8
CERIG++
Sbjct: 30 LCERIGID 37


>sp|ACKA_METMZ|ACETATE kinase|Methanosarcina mazei (Methanosarcina frisia)

Query: 1 FCERIGLE 8
CERIG++
Sbjct: 30 LCERIGID 37


>sp|ACKA_METMA|ACETATE kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 FCERIGLE 8
CERIG++
Sbjct: 30 LCERIGID 37


>sp|ACKA_METAC|ACETATE kinase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 FCERIGLE 8
CERIG++
Sbjct: 30 LCERIGID 37


>sp|PYRG_METKA|CTP synthase|Methanopyrus kandleri (strain AV19 /

Query: 2 CERIGLE 8
CER+GL+
Sbjct: 261 CERLGLD 267


>sp|NDRZ_PYRFU|VITAMIN B12-dependent ribonucleoside-diphosphate reductase|Pyrococcus

Query: 1 FCERIGLE 8
F E+IGLE
Sbjct: 1237 FAEKIGLE 1244


>sp|FOLD_METBF|BIFUNCTIONAL protein FolD|Methanosarcina barkeri (strain Fusaro /

Query: 2 CERIGLE 8
CER+G++
Sbjct: 63 CERVGIQ 69


>sp|ACKA_METBF|ACETATE kinase|Methanosarcina barkeri (strain Fusaro /

Query: 1 FCERIGLE 8
CER+G++
Sbjct: 30 LCERVGID 37


>sp|NIFH1_METIV|NITROGENASE iron protein 1|Methanobacterium ivanovii

Query: 1 FCERIGLEV 9
FC+RIG ++
Sbjct: 199 FCKRIGTQM 207


>sp|PURL_THEAC|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 FCERIGLEV 9
FC ++GL V
Sbjct: 546 FCRKMGLPV 554


>sp|AROA_PICTO|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Picrophilus torridus (strain ATCC

Query: 3 ERIGLEVA 10
ERI LE+A
Sbjct: 48 ERIALEIA 55


>sp|DPOL1_SULOH|DNA polymerase 1|Sulfurisphaera ohwakuensis

Query: 1 FCERIGLEV 9
+C IGL+V
Sbjct: 641 YCRSIGLQV 649


>sp|APGM_SULTO|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 CERIGLEV 9
CE+IG+ V
Sbjct: 261 CEQIGMRV 268


>sp|DP2L_HALWD|DNA polymerase II large subunit|Haloquadratum walsbyi (strain DSM 16790

Query: 1 FCERIGLEV 9
+CE +G E+
Sbjct: 720 YCETVGFEL 728


>sp|HIS2_METVS|PHOSPHORIBOSYL-ATP pyrophosphatase|Methanococcus vannielii (strain ATCC 35089

Query: 2 CERIGLEVA 10
CE+IG E A
Sbjct: 40 CEKIGEEAA 48


>sp|FOLD_METAC|BIFUNCTIONAL protein FolD|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 CERIGLE 8
CER+G++
Sbjct: 63 CERVGIK 69


>sp|HIS2_METM7|PHOSPHORIBOSYL-ATP pyrophosphatase|Methanococcus maripaludis (strain C7 /

Query: 2 CERIGLEVA 10
CE+IG E A
Sbjct: 40 CEKIGEEAA 48


>sp|TSGDD_HALVD|GLUCOSE import ATP-binding protein TsgD13|Haloferax volcanii (strain ATCC

Query: 3 ERIGLEV 9
ERIGLE+
Sbjct: 523 ERIGLEM 529


>sp|HELS_PYRAB|ATP-DEPENDENT DNA helicase Hel308|Pyrococcus abyssi (strain GE5 /

Query: 3 ERIGLEVA 10
ER+GL+VA
Sbjct: 92 ERLGLKVA 99


>sp|ATGT_SACS2|TRNA-GUANINE(15) transglycosylase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 CERIGLEV 9
CE++GL +
Sbjct: 489 CEKLGLHI 496


>sp|CYDK_THEKO|CYTIDINE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 CERIGLEVA 10
C R+GLE A
Sbjct: 256 CVRLGLERA 264


>sp|COFE_METMA|COENZYME F420:L-glutamate ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 FCERIGLE 8
CE+IGL+
Sbjct: 24 ICEKIGLQ 31


>sp|Y367_PYRAB|PUTATIVE HTH-type transcriptional regulatory protein|Pyrococcus abyssi

Query: 2 CERIGLEV 9
ERIG+EV
Sbjct: 214 LERIGMEV 221


>sp|FOLD_METTP|BIFUNCTIONAL protein FolD|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 CERIGL 7
CER+G+
Sbjct: 51 CERVGI 56


>sp|FOLD_METMA|BIFUNCTIONAL protein FolD|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 CERIGL 7
CER+G+
Sbjct: 63 CERVGI 68


>sp|FOLD_METB6|BIFUNCTIONAL protein FolD|Methanoregula boonei (strain DSM 21154

Query: 2 CERIGL 7
CER+G+
Sbjct: 53 CERVGI 58


>sp|SYE_METTM|GLUTAMATE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 3 ERIGLEV 9
ER+GLE+
Sbjct: 69 ERLGLEI 75


>sp|FLAE_METJA|PUTATIVE flagella-related protein E|Methanocaldococcus jannaschii (strain

Query: 1 FCERIGLE 8
CER G+E
Sbjct: 44 LCERAGVE 51


>sp|FOLD_METMJ|BIFUNCTIONAL protein FolD|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 CERIGL 7
CER+G+
Sbjct: 51 CERVGI 56


>sp|HIS2_METM6|PHOSPHORIBOSYL-ATP pyrophosphatase|Methanococcus maripaludis (strain C6 /

Query: 2 CERIGLEVA 10
CE++G E A
Sbjct: 40 CEKVGEEAA 48


>sp|SYE_METTH|GLUTAMATE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 ERIGLEV 9
ER+GLE+
Sbjct: 70 ERLGLEI 76


>sp|HIS2_METM5|PHOSPHORIBOSYL-ATP pyrophosphatase|Methanococcus maripaludis (strain C5 /

Query: 2 CERIGLEVA 10
CE++G E A
Sbjct: 40 CEKVGEEAA 48


>sp|RS8_METIG|SMALL ribosomal subunit protein uS8|Methanotorris igneus (Methanococcus

Query: 2 CERIGLEV 9
CER+G +V
Sbjct: 17 CERVGKKV 24


>sp|FOLD_NATPD|BIFUNCTIONAL protein FolD|Natronomonas pharaonis (strain ATCC 35678

Query: 2 CERIGLE 8
CE +G+E
Sbjct: 56 CEEVGIE 62


>sp|RS8_METJA|SMALL ribosomal subunit protein uS8|Methanocaldococcus jannaschii

Query: 2 CERIGLEV 9
CER+G +V
Sbjct: 17 CERVGKKV 24


>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1 (strain

Query: 2 CERIGLEV 9
C R G+EV
Sbjct: 654 CSRCGIEV 661


>sp|Y804_METJA|UNCHARACTERIZED protein MJ0804|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FCERIGLEV 9
FC+ +GL V
Sbjct: 99 FCKDLGLRV 107


>sp|NIFH_METMP|NITROGENASE iron protein|Methanococcus maripaludis (strain DSM 14266

Query: 1 FCERIGLEV 9
FC++IG ++
Sbjct: 199 FCDKIGTQL 207


>sp|NIFH_METMI|NITROGENASE iron protein|Methanococcus maripaludis (Methanococcus deltae)

Query: 1 FCERIGLEV 9
FC++IG ++
Sbjct: 199 FCDKIGTQL 207


>sp|CIMA_METAC|PUTATIVE (R)-citramalate synthase CimA|Methanosarcina acetivorans (strain

Query: 1 FCERIGLEV 9
FC+ +GL V
Sbjct: 153 FCDTVGLLV 161


>sp|HIS2_METMP|PHOSPHORIBOSYL-ATP pyrophosphatase|Methanococcus maripaludis (strain DSM 14266

Query: 2 CERIGLEVA 10
CE++G E A
Sbjct: 40 CEKVGEEAA 48


>sp|CIMA_METMA|PUTATIVE (R)-citramalate synthase CimA|Methanosarcina mazei (strain ATCC

Query: 1 FCERIGLEV 9
FC+ +GL V
Sbjct: 153 FCDTVGLLV 161


>sp|PGP_METKA|PHOSPHOGLYCOLATE phosphatase|Methanopyrus kandleri (strain AV19 /

Query: 1 FCERIGLE 8
CER+G++
Sbjct: 163 ICERLGID 170


>sp|Y031_METPE|PUTATIVE HTH-type transcriptional regulatory protein|Methanosphaerula

Query: 2 CERIGLEV 9
ERIGLE+
Sbjct: 211 LERIGLEL 218


>sp|HISX_THEKO|HISTIDINOL dehydrogenase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 FCERIGLEV 9
+C R G+EV
Sbjct: 248 YCSREGIEV 256




27|SequenceR|140|131|IRSHHFCERI

>sp|Y3406_NATPD|UPF0179 protein NP_3406A|Natronomonas pharaonis (strain ATCC 35678

Query: 3 SHHFCE 8
SH FCE
Sbjct: 103 SHEFCE 108


>sp|Y3004_HALS3|UPF0179 protein OE_3004R|Halobacterium salinarum (strain ATCC 29341

Query: 3 SHHFCE 8
SH FCE
Sbjct: 103 SHEFCE 108


>sp|Y1401_HALSA|UPF0179 protein VNG_1401C|Halobacterium salinarum (strain ATCC 700922

Query: 3 SHHFCE 8
SH FCE
Sbjct: 103 SHEFCE 108


>sp|COFD_METKA|2-PHOSPHO-L-LACTATE transferase|Methanopyrus kandleri (strain AV19 /

Query: 2 RSHHFCERI 10
R H F ER+
Sbjct: 74 RGHEFLERL 82


>sp|RS27A_THEAC|SMALL ribosomal subunit protein eS31|Thermoplasma acidophilum (strain

Query: 1 IRSHHFCER 9
+R H FC R
Sbjct: 15 VRKHRFCPR 23


>sp|HIS7_METST|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 HHFCERI 10
HH CE I
Sbjct: 161 HHICEVI 167


>sp|HIS7_METMJ|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Methanoculleus marisnigri (strain ATCC 35101

Query: 4 HHFCE 8
HH CE
Sbjct: 159 HHICE 163




28|SequenceR|145|136|NACSIIRSHH

>sp|AROD_ARCFU|3-DEHYDROQUINATE dehydratase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 CSIIRSHH 10
C II S+H
Sbjct: 91 CRIIESYH 98


>sp|RNH2_METB6|RIBONUCLEASE HII|Methanoregula boonei (strain DSM 21154

Query: 3 CSIIRSHH 10
C I+ HH
Sbjct: 122 CEIVSEHH 129




29|SequenceR|150|141|ENEACNACSI

>sp|THIC_ARCFU|PHOSPHOMETHYLPYRIMIDINE synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ENEACNAC 8
E+EAC+ C
Sbjct: 402 ESEACSMC 409


>sp|CAS2A_METHJ|CRISPR-ASSOCIATED endoribonuclease Cas2 1|Methanospirillum hungatei JF-1 (strain

Query: 3 EACNAC 8
E CNAC
Sbjct: 69 EVCNAC 74


>sp|AOR_THEKO|TUNGSTEN-CONTAINING aldehyde ferredoxin oxidoreductase|Thermococcus kodakarensis

Query: 2 NEACNACSI 10
N+ C AC I
Sbjct: 285 NQPCYACPI 293


>sp|FER5_METJA|UNCHARACTERIZED ferredoxin MJ0251|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 CNACSI 10
CNACSI
Sbjct: 123 CNACSI 128


>sp|SYH_ARCFU|HISTIDINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 NEACNACSI 10
+ C ACS+
Sbjct: 307 DRVCEACSV 315


>sp|RIBL_METTP|FAD synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 ENEACNACS 9
E E C CS
Sbjct: 122 EREPCELCS 130


>sp|Y1363_METJA|UNCHARACTERIZED protein MJ1363|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 ACNACSI 10
CNAC I
Sbjct: 23 GCNACDI 29


>sp|Y2181_ARCFU|UNCHARACTERIZED protein AF_2181|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ENEACNACS 9
E+ CN CS
Sbjct: 187 ESRYCNYCS 195


>sp|QUEC_METLZ|7-CYANO-7-DEAZAGUANINE synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 NEACNACS 9
+EAC CS
Sbjct: 193 DEACGVCS 200




30|SequenceR|155|146|PTCGEENEAC

>sp|SYI_THEAC|ISOLEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PTCGEE 6
PTCGEE
Sbjct: 502 PTCGEE 507


>sp|RF1_THEVO|PEPTIDE chain release factor subunit|Thermoplasma volcanium (strain ATCC

Query: 1 PTCGEE 6
PTCGEE
Sbjct: 334 PTCGEE 339


>sp|SYP_METMA|PROLINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PTCGEENE 8
P CGEE E
Sbjct: 464 PACGEETE 471


>sp|SYP_METBF|PROLINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 PTCGEENE 8
P CGEE E
Sbjct: 464 PICGEETE 471


>sp|SYM_THEON|METHIONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 1 PTCGEENE 8
P CG EN+
Sbjct: 144 PYCGAENQ 151


>sp|SYM_THEKO|METHIONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PTCGEENE 8
P CG EN+
Sbjct: 144 PYCGAENQ 151


>sp|SYM_PYRFU|METHIONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PTCGEENE 8
P CG EN+
Sbjct: 144 PYCGAENQ 151


>sp|RPO2_THECE|DNA-DIRECTED RNA polymerase subunit Rpo2|Thermococcus celer

Query: 1 PTCGEE 6
P CGEE
Sbjct: 1083 PVCGEE 1088


>sp|RGYR_ARCFU|REVERSE gyrase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PTCGEEN 7
P CG EN
Sbjct: 599 PKCGSEN 605


>sp|SYM_PYRHO|METHIONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PTCGEENE 8
P CG EN+
Sbjct: 144 PFCGAENQ 151


>sp|RGYRA_NANEQ|REVERSE gyrase subunit A|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 PTCGEEN 7
P CG EN
Sbjct: 134 PRCGSEN 140


>sp|TRM1_PYRFU|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrococcus furiosus (strain

Query: 1 PTCGEENEAC 10
P CG +AC
Sbjct: 171 PLCGAHPKAC 180


>sp|TRM1_PYRAB|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrococcus abyssi (strain

Query: 1 PTCGEENEAC 10
P CG +AC
Sbjct: 169 PLCGAHPKAC 178


>sp|SYFB_THEKO|PHENYLALANINE--TRNA ligase beta subunit|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 CGEENEAC 10
CGE E C
Sbjct: 405 CGEHQEEC 412


>sp|SYI_THEVO|ISOLEUCINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 PTCGEE 6
P CGEE
Sbjct: 502 PDCGEE 507


>sp|RAD50_METMA|DNA double-strand break repair Rad50|Methanosarcina mazei (strain ATCC

Query: 1 PTCGEE 6
PTCG+E
Sbjct: 556 PTCGQE 561


>sp|RF1_METS3|PEPTIDE chain release factor subunit|Methanobrevibacter smithii (strain

Query: 1 PTCGEENE 8
P+CG E E
Sbjct: 330 PSCGNEEE 337


>sp|IF2G_METMA|TRANSLATION initiation factor 2 subunit|Methanosarcina mazei (strain ATCC

Query: 1 PTCGEENE 8
P CGE+ E
Sbjct: 94 PNCGEKTE 101


>sp|TRM1_PYRHO|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrococcus horikoshii

Query: 1 PTCGEENEAC 10
P CG AC
Sbjct: 172 PLCGAHPRAC 181


>sp|IF2G_METAC|TRANSLATION initiation factor 2 subunit|Methanosarcina acetivorans (strain ATCC

Query: 1 PTCGEENE 8
P CGE+ E
Sbjct: 106 PNCGEKTE 113


>sp|RAD50_METAC|DNA double-strand break repair Rad50|Methanosarcina acetivorans (strain

Query: 1 PTCGEE 6
PTCG+E
Sbjct: 560 PTCGQE 565


>sp|TFE_METS3|TRANSCRIPTION factor E|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 PTCGEENE 8
P CGEE E
Sbjct: 135 PECGEELE 142


>sp|SYP_PYRAB|PROLINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 PTCGEEN 7
P CGEE+
Sbjct: 426 PWCGEES 432


>sp|SYP_PYRHO|PROLINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PTCGEEN 7
P CGEE+
Sbjct: 426 PWCGEES 432


>sp|FPRA_METAZ|COENZYME F420H(2) oxidase|Methanobrevibacter arboriphilus

Query: 5 EENEAC 10
EEN+AC
Sbjct: 391 EENKAC 396


>sp|SYP_PYRFU|PROLINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PTCGEE 6
P CGEE
Sbjct: 426 PWCGEE 431


>sp|SYP_THEKO|PROLINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PTCGEE 6
P CGEE
Sbjct: 427 PWCGEE 432


>sp|PYRG_METMJ|CTP synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 TCGEENEAC 10
TCG E C
Sbjct: 476 TCGPRMEVC 484


>sp|IF2G_THEKO|TRANSLATION initiation factor 2 subunit|Thermococcus kodakarensis (strain

Query: 1 PTCGEENE 8
P CG E E
Sbjct: 74 PYCGHETE 81


>sp|IF2G_THEON|TRANSLATION initiation factor 2 subunit|Thermococcus onnurineus (strain NA1)

Query: 1 PTCGEENE 8
P CG E E
Sbjct: 74 PYCGHETE 81


>sp|IF2G_PYRHO|TRANSLATION initiation factor 2 subunit|Pyrococcus horikoshii (strain ATCC

Query: 1 PTCGEENE 8
P CG E E
Sbjct: 74 PYCGHETE 81


>sp|IF2G_PYRFU|TRANSLATION initiation factor 2 subunit|Pyrococcus furiosus (strain ATCC

Query: 1 PTCGEENE 8
P CG E E
Sbjct: 74 PYCGHETE 81


>sp|IF2G_PYRAB|TRANSLATION initiation factor 2 subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 PTCGEENE 8
P CG E E
Sbjct: 74 PYCGHETE 81


>sp|DP2L_METTP|DNA polymerase II large subunit|Methanothrix thermoacetophila (strain

Query: 1 PTCGEENEA 9
P+CG+E A
Sbjct: 622 PSCGKEGFA 630


>sp|SYP_METBU|PROLINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PTCGEE 6
P CGEE
Sbjct: 427 PWCGEE 432


>sp|ARGDC_SACS2|ARGININE decarboxylase proenzyme|Saccharolobus solfataricus (strain ATCC

Query: 2 TCGEENE 8
TCGE+++
Sbjct: 101 TCGEDSD 107


>sp|ARGDC_SACI7|ARGININE decarboxylase proenzyme|Saccharolobus islandicus (strain Y.G.57.14

Query: 2 TCGEENE 8
TCGE+++
Sbjct: 101 TCGEDSD 107


>sp|ARGDC_SACI6|ARGININE decarboxylase proenzyme|Saccharolobus islandicus (strain M.16.4 /

Query: 2 TCGEENE 8
TCGE+++
Sbjct: 101 TCGEDSD 107


>sp|ARGDC_SACI4|ARGININE decarboxylase proenzyme|Saccharolobus islandicus (strain M.14.25 /

Query: 2 TCGEENE 8
TCGE+++
Sbjct: 101 TCGEDSD 107


>sp|ARGDC_SACI3|ARGININE decarboxylase proenzyme|Saccharolobus islandicus (strain M.16.27)

Query: 2 TCGEENE 8
TCGE+++
Sbjct: 101 TCGEDSD 107


>sp|ARGDC_SACI2|ARGININE decarboxylase proenzyme|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 TCGEENE 8
TCGE+++
Sbjct: 101 TCGEDSD 107


>sp|ARGDC_SACI1|ARGININE decarboxylase proenzyme|Saccharolobus islandicus (strain Y.N.15.51

Query: 2 TCGEENE 8
TCGE+++
Sbjct: 101 TCGEDSD 107


>sp|ARGDC_METS5|ARGININE decarboxylase proenzyme|Metallosphaera sedula (strain ATCC 51363

Query: 2 TCGEENE 8
TCGE+++
Sbjct: 95 TCGEDSD 101


>sp|SUI1_METMJ|PROTEIN translation factor SUI1 homolog|Methanoculleus marisnigri (strain

Query: 1 PTCGEENEAC 10
PTCG E C
Sbjct: 7 PTCGLPKELC 16


>sp|SUI1_METB6|PROTEIN translation factor SUI1 homolog|Methanoregula boonei (strain DSM

Query: 1 PTCGEENEAC 10
PTCG E C
Sbjct: 7 PTCGLPKELC 16




31|SequenceR|160|151|CALHLPTCGE

>sp|SYI_THEAC|ISOLEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 6 PTCGE 10
PTCGE
Sbjct: 502 PTCGE 506


>sp|RF1_THEVO|PEPTIDE chain release factor subunit|Thermoplasma volcanium (strain ATCC

Query: 6 PTCGE 10
PTCGE
Sbjct: 334 PTCGE 338


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 4 HLPTCGE 10
H P CGE
Sbjct: 148 HCPHCGE 154


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 4 HLPTCGE 10
H P CGE
Sbjct: 148 HCPHCGE 154


>sp|Y1165_HALMA|UPF0212 protein rrnAC1165|Haloarcula marismortui (strain ATCC 43049

Query: 4 HLPTCGE 10
H P CGE
Sbjct: 49 HCPHCGE 55


>sp|CYAS_METMJ|CYSTEATE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 LHLPTCG 9
LH P CG
Sbjct: 7 LHCPGCG 13


>sp|MTRA_METAC|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanosarcina acetivorans (strain

Query: 1 CALHLP 6
CA HLP
Sbjct: 32 CASHLP 37


>sp|DP2S_METTH|DNA polymerase II small subunit|Methanothermobacter thermautotrophicus

Query: 5 LPTCGE 10
+PTCG+
Sbjct: 462 VPTCGQ 467


>sp|Y1038_PYRHO|PROBABLE ABC transporter permease protein|Pyrococcus horikoshii (strain

Query: 2 ALHLPT 7
A+HLPT
Sbjct: 79 AIHLPT 84


>sp|ARGC_METST|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 HLPTCGE 10
H PTC +
Sbjct: 188 HYPTCAD 194


>sp|TRMY_ARCFU|TRNA (pseudouridine(54)-N(1))-methyltransferase|Archaeoglobus fulgidus

Query: 3 LHLPTCGE 10
+H P CG+
Sbjct: 22 MHTPLCGD 29


>sp|NNR_METHJ|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Methanospirillum hungatei JF-1

Query: 3 LHLPTCGE 10
+H+PT G+
Sbjct: 280 IHVPTAGD 287




32|SequenceR|165|156|GDGKRCALHL

>sp|P936_METJA|PHOSPHODIESTERASE MJ0936|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 DGKRCAL 8
DG+RC L
Sbjct: 61 DGERCKL 67


>sp|DNLI_PYRIL|DNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 DGKRCALHL 10
DG+R +HL
Sbjct: 253 DGERAQIHL 261


>sp|DNLI_PYRCJ|DNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 DGKRCALHL 10
DG+R +HL
Sbjct: 253 DGERAQIHL 261


>sp|DNLI_PYRAE|DNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 DGKRCALHL 10
DG+R +HL
Sbjct: 253 DGERAQIHL 261


>sp|DNLI_IGNH4|DNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 DGKRCALHL 10
DG+R +HL
Sbjct: 260 DGERAQIHL 268


>sp|DNLI_NITMS|DNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 2 DGKRCALHL 10
DG+R LH+
Sbjct: 254 DGERVQLHI 262


>sp|RNP2_METPE|RIBONUCLEASE P protein component 2|Methanosphaerula palustris (strain ATCC

Query: 1 GDGKRCALH 9
GDG ALH
Sbjct: 44 GDGAGAALH 52


>sp|SYP_AERPE|PROLINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 DGKRCAL 8
+GKRC L
Sbjct: 464 EGKRCPL 470


>sp|GATD_HALSA|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Halobacterium salinarum (strain ATCC

Query: 5 RCALH 9
RCALH
Sbjct: 232 RCALH 236


>sp|GATD_HALS3|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Halobacterium salinarum (strain ATCC

Query: 5 RCALH 9
RCALH
Sbjct: 232 RCALH 236


>sp|Y1002_PYRHO|UPF0282 protein PH1002|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 DGKRCALH 9
DGK+ LH
Sbjct: 175 DGKKSVLH 182


>sp|RNP2_METMA|RIBONUCLEASE P protein component 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 DGKRCALHL 10
+GKR LH+
Sbjct: 85 NGKRATLHV 93


>sp|DADD_METMP|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain DSM 14266

Query: 2 DGKRCAL 8
DGK C L
Sbjct: 43 DGKNCVL 49


>sp|DADD_METM7|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain C7 /

Query: 2 DGKRCAL 8
DGK C L
Sbjct: 43 DGKNCVL 49


>sp|DADD_METM6|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain C6 /

Query: 2 DGKRCAL 8
DGK C L
Sbjct: 43 DGKNCVL 49


>sp|DADD_METM5|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain C5 /

Query: 2 DGKRCAL 8
DGK C L
Sbjct: 43 DGKNCVL 49


>sp|Y2337_ARCFU|UNCHARACTERIZED protein AF_2337|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 DGKRCALHL 10
DG+ C +H+
Sbjct: 39 DGELCQIHV 47


>sp|RNP2_METAC|RIBONUCLEASE P protein component 2|Methanosarcina acetivorans (strain ATCC

Query: 2 DGKRCALHL 10
+GKR LH+
Sbjct: 85 NGKRATLHV 93




33|SequenceR|170|161|EVLIEGDGKR

>sp|AMTAB_PYRAB|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 1 EVLIEGDGKR 10
EVLI G+GK+
Sbjct: 374 EVLIHGEGKK 383


>sp|COFC_METMJ|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 EVLIEGDGKR 10
E+LI G G+R
Sbjct: 175 EILIHGKGRR 184


>sp|AROA_METHJ|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanospirillum hungatei JF-1 (strain

Query: 1 EVLIEGDGK 9
EVL++GD K
Sbjct: 210 EVLVDGDDK 218


>sp|COFC_NATPD|2-PHOSPHO-L-LACTATE guanylyltransferase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 EVLIEGDGK 9
EVL+ GDG+
Sbjct: 168 EVLLHGDGR 176


>sp|APGM_METPE|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosphaerula palustris (strain ATCC

Query: 2 VLIEGDGKR 10
VLI GDG R
Sbjct: 362 VLIRGDGVR 370


>sp|AMTAB_PYRHO|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 1 EVLIEGDGKR 10
+VLI G+GK+
Sbjct: 374 KVLIHGEGKK 383


>sp|NARB_HALMT|PUTATIVE respiratory nitrate reductase subunit|Haloferax mediterranei

Query: 3 LIEGDGKR 10
L++GDG R
Sbjct: 87 LVDGDGNR 94


>sp|Y500_METJA|UNCHARACTERIZED protein MJ0500|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VLIEGDGKR 10
VLIE +GK+
Sbjct: 38 VLIESNGKK 46


>sp|Y1620_METJA|UNCHARACTERIZED protein MJ1620|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EVLIEGDGKR 10
+ L GDGKR
Sbjct: 7 DCLASGDGKR 16


>sp|RN393_SACS2|CRISPR system ring nuclease SSO1393|Saccharolobus solfataricus (strain

Query: 2 VLIEGDGKR 10
V++EG+G+R
Sbjct: 278 VIVEGEGER 286


>sp|Y2020_ARCFU|UNCHARACTERIZED protein AF_2020|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 LIEGDGKR 10
L+EGD +R
Sbjct: 75 LVEGDAER 82


>sp|HELS_THEKO|ATP-DEPENDENT DNA helicase Hel308|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 LIEGDG 8
LIEGDG
Sbjct: 600 LIEGDG 605


>sp|DUT_METKA|PROBABLE deoxyuridine 5'-triphosphate nucleotidohydrolase|Methanopyrus

Query: 2 VLIEGDGKR 10
L+EGD KR
Sbjct: 40 ALLEGDDKR 48


>sp|HEM1_METMJ|GLUTAMYL-TRNA reductase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 EVLIEGDGK 9
EVL++GD +
Sbjct: 56 EVLVQGDAR 64


>sp|Y663_METJA|UNCHARACTERIZED protein MJ0663|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VLIEGDG 8
VLI GDG
Sbjct: 398 VLISGDG 404


>sp|FMDC_METBF|MOLYBDENUM-CONTAINING formylmethanofuran dehydrogenase 1 subunit|Methanosarcina barkeri

Query: 1 EVLIEGD 7
E+L+EGD
Sbjct: 202 EILVEGD 208


>sp|DAPB_METTH|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 VLIEGDGKR 10
VL GDG+R
Sbjct: 223 VLFAGDGER 231


>sp|RS12_HYPBU|SMALL ribosomal subunit protein uS12|Hyperthermus butylicus (strain DSM

Query: 1 EVLIEGDG 8
EVLIEG G
Sbjct: 102 EVLIEGIG 109


>sp|MTAD_PYRAB|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase|Pyrococcus abyssi (strain GE5 /

Query: 1 EVLIEGD 7
+VLIEGD
Sbjct: 25 DVLIEGD 31




34|SequenceR|175|166|CYQVLEVLIE

>sp|SYI_AERPE|ISOLEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 YQVLEVL 8
Y+VLEVL
Sbjct: 279 YEVLEVL 285


>sp|Y1463_METJA|UPF0128 protein MJ1463|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YQVLEVLIE 10
Y+V+EVL E
Sbjct: 72 YEVIEVLQE 80




35|SequenceR|180|171|DMQTHCYQVL

>sp|CAS5_HALVD|CRISPR-ASSOCIATED protein Cas5|Haloferax volcanii (strain ATCC 29605

Query: 1 DMQTHCYQVL 10
D Q H Y+VL
Sbjct: 118 DRQLHSYEVL 127


>sp|AHBB_METBF|SIROHEME decarboxylase beta subunit|Methanosarcina barkeri (strain Fusaro

Query: 4 THCYQ 8
THCY+
Sbjct: 93 THCYE 97




36|SequenceR|185|176|KYDTVDMQTH

>sp|DNLI_METTH|DNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 KYDTVDMQTH 10
KYD + +Q H
Sbjct: 251 KYDGIRVQIH 260


>sp|DNLI_METTF|DNA ligase|Methanothermobacter thermautotrophicus (Methanobacterium

Query: 1 KYDTVDMQTH 10
KYD + +Q H
Sbjct: 251 KYDGIRVQIH 260


>sp|DNLI_METS3|DNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 KYDTVDMQTH 10
KYD + +Q H
Sbjct: 248 KYDGIRLQVH 257


>sp|KDPA_THEVO|POTASSIUM-TRANSPORTING ATPase potassium-binding subunit|Thermoplasma volcanium (strain

Query: 1 KYDTVDMQTH 10
KY T+ + TH
Sbjct: 433 KYSTLSLVTH 442


>sp|ISCS1_ARCFU|CYSTEINE desulfurase IscS 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KYDTVDMQ 8
KY TVD++
Sbjct: 122 KYGTVDLE 129


>sp|XPD_THEAC|ATP-DEPENDENT DNA helicase XPD|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 KYDTVD 6
KYDT+D
Sbjct: 406 KYDTLD 411


>sp|XERA_METTH|TYROSINE recombinase XerA|Methanothermobacter thermautotrophicus (strain

Query: 2 YDTVDMQT 9
Y +VDMQT
Sbjct: 293 YTSVDMQT 300




37|SequenceR|190|181|FVTEGKYDTV

>sp|Y644_METJA|UNCHARACTERIZED protein MJ0644|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VTEGKYDT 9
V EGKY+T
Sbjct: 79 VGEGKYET 86


>sp|RL11_SACS2|LARGE ribosomal subunit protein uL11|Saccharolobus solfataricus (strain

Query: 2 VTEGKYD 8
V EGKYD
Sbjct: 149 VEEGKYD 155


>sp|RL11_SACI7|LARGE ribosomal subunit protein uL11|Saccharolobus islandicus (strain

Query: 2 VTEGKYD 8
V EGKYD
Sbjct: 149 VEEGKYD 155


>sp|RL11_SACI6|LARGE ribosomal subunit protein uL11|Saccharolobus islandicus (strain

Query: 2 VTEGKYD 8
V EGKYD
Sbjct: 149 VEEGKYD 155


>sp|RL11_SACI3|LARGE ribosomal subunit protein uL11|Saccharolobus islandicus (strain

Query: 2 VTEGKYD 8
V EGKYD
Sbjct: 149 VEEGKYD 155


>sp|RL11_SACI2|LARGE ribosomal subunit protein uL11|Saccharolobus islandicus (strain

Query: 2 VTEGKYD 8
V EGKYD
Sbjct: 149 VEEGKYD 155


>sp|RAD50_ARCFU|DNA double-strand break repair Rad50|Archaeoglobus fulgidus (strain

Query: 2 VTEGKYDTV 10
+TEGKY V
Sbjct: 756 LTEGKYSGV 764


>sp|RL11_METB6|LARGE ribosomal subunit protein uL11|Methanoregula boonei (strain DSM

Query: 2 VTEGKYDTV 10
+ GKYD+V
Sbjct: 147 IAAGKYDSV 155


>sp|MANB_METJA|PHOSPHOMANNOMUTASE jannaschii (strain ATCC 43067

Query: 1 FVTEGKYD 8
F T+GKYD
Sbjct: 82 FGTKGKYD 89


>sp|HEM3_METBF|PROBABLE porphobilinogen deaminase|Methanosarcina barkeri (strain Fusaro /

Query: 2 VTEGKYDTV 10
+ EGKYD +
Sbjct: 153 LKEGKYDGI 161


>sp|RL11_SACI4|LARGE ribosomal subunit protein uL11|Saccharolobus islandicus (strain

Query: 2 VTEGKYD 8
V EGKYD
Sbjct: 149 VEEGKYD 155


>sp|RL11_SACI1|LARGE ribosomal subunit protein uL11|Saccharolobus islandicus (strain

Query: 2 VTEGKYD 8
V EGKYD
Sbjct: 149 VEEGKYD 155


>sp|RL11_METS5|LARGE ribosomal subunit protein uL11|Metallosphaera sedula (strain ATCC

Query: 2 VTEGKYD 8
V EGKYD
Sbjct: 149 VEEGKYD 155


>sp|RL11_SULTO|LARGE ribosomal subunit protein uL11|Sulfurisphaera tokodaii (strain DSM

Query: 2 VTEGKYD 8
V EGKYD
Sbjct: 149 VDEGKYD 155


>sp|HELS_SULAC|ATP-DEPENDENT DNA helicase Hel308|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 VTEGKYDT 9
VT G YDT
Sbjct: 103 VTSGDYDT 110


>sp|ALAXM_METMA|ALANYL-TRNA editing protein AlaX-M|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 VTEGKY 7
VTEGKY
Sbjct: 22 VTEGKY 27


>sp|RAD50_PYRFU|DNA double-strand break repair Rad50|Pyrococcus furiosus (strain ATCC

Query: 3 TEGKYDTV 10
TEGKY V
Sbjct: 760 TEGKYSEV 767


>sp|AATA_CENSY|A-TYPE ATP synthase subunit A|Cenarchaeum symbiosum (strain A)

Query: 1 FVTEGKYD 8
V+EG+YD
Sbjct: 163 IVSEGEYD 170


>sp|PUR5_METKA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Methanopyrus kandleri (strain AV19 /

Query: 5 GKYDTV 10
G+YDTV
Sbjct: 75 GRYDTV 80




38|SequenceR|195|186|QVAYHFVTEG

>sp|SFSA_THEVO|SUGAR fermentation stimulation protein homolog|Thermoplasma volcanium

Query: 1 QVAYHFVTE 9
Q+A HFV++
Sbjct: 82 QIASHFVSQ 90


>sp|ACSA_METTP|ACETYL-COENZYME A synthetase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 QVAYHFVTE 9
+VAY+FV E
Sbjct: 107 KVAYYFVGE 115


>sp|Y1030_METLZ|UPF0210 protein Mlab_1030|Methanocorpusculum labreanum (strain ATCC 43576

Query: 3 AYHFVTEG 10
A+H VTEG
Sbjct: 205 AFHGVTEG 212


>sp|SYI_PYRAE|ISOLEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 YHFVTEG 10
Y FVTEG
Sbjct: 558 YDFVTEG 564


>sp|SYI_METTM|ISOLEUCINE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 4 YHFVTEG 10
Y F+TEG
Sbjct: 545 YDFITEG 551


>sp|SYI_METTH|ISOLEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 YHFVTEG 10
Y F+TEG
Sbjct: 545 YDFITEG 551


>sp|NADB_PYRFU|L-ASPARTATE oxidase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 AYHFVT 8
AYHF+T
Sbjct: 85 AYHFLT 90


>sp|PELO_PYRFU|PROTEIN pelota homolog|Pyrococcus furiosus (strain ATCC 43587

Query: 4 YHFVTEG 10
YH ++EG
Sbjct: 27 YHIISEG 33




39|SequenceR|200|191|QSNDGQVAYH

>sp|GAD_SACS2|D-GLUCONATE/D-GALACTONATE dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 QSNDGQVAYH 10
++ND +VA+H
Sbjct: 290 EANDVEVAFH 299


>sp|RL3_METKA|LARGE ribosomal subunit protein uL3|Methanopyrus kandleri (strain AV19 /

Query: 5 GQVAYH 10
GQV YH
Sbjct: 257 GQVGYH 262


>sp|Y1242_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 1 QSNDGQVAYH 10
+ +GQ+ YH
Sbjct: 61 EPTEGQIIYH 70


>sp|Y1635_METJA|TNPB-LIKE protein MJ1635|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 QSNDGQVAY 9
+S +GQV Y
Sbjct: 337 ESQEGQVVY 345


>sp|RADB_THESM|DNA repair and recombination protein|Thermococcus sibiricus (strain

Query: 3 NDGQVAY 9
N+G+VAY
Sbjct: 44 NEGKVAY 50


>sp|RADB_PYRAB|DNA repair and recombination protein|Pyrococcus abyssi (strain GE5 /

Query: 3 NDGQVAY 9
N+G+VAY
Sbjct: 45 NEGKVAY 51


>sp|RADB_PYRHO|DNA repair and recombination protein|Pyrococcus horikoshii (strain

Query: 3 NDGQVAY 9
N+G+VAY
Sbjct: 55 NEGKVAY 61


>sp|RADB_PYRFU|DNA repair and recombination protein|Pyrococcus furiosus (strain ATCC

Query: 3 NDGQVAY 9
N+G+VAY
Sbjct: 49 NEGKVAY 55


>sp|IF2A_METST|TRANSLATION initiation factor 2 subunit|Methanosphaera stadtmanae (strain ATCC

Query: 1 QSNDGQVAYH 10
+ NDG+ ++H
Sbjct: 246 EENDGEGSFH 255


>sp|Y1705_METHJ|UPF0173 metal-dependent hydrolase Mhun_1705|Methanospirillum hungatei JF-1

Query: 2 SNDGQVAYH 10
S DG+ YH
Sbjct: 119 SMDGRTVYH 127


>sp|PGP_NITMS|PHOSPHOGLYCOLATE phosphatase|Nitrosopumilus maritimus (strain SCM1)

Query: 3 NDGQVAYH 10
+D Q AYH
Sbjct: 139 SDSQYAYH 146


>sp|TRPB_META3|TRYPTOPHAN synthase beta chain|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 QSNDGQVA 8
Q +DGQ+A
Sbjct: 285 QDDDGQIA 292


>sp|SYE_METTM|GLUTAMATE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 3 NDGQVAYH 10
+DG++ YH
Sbjct: 468 SDGELRYH 475




40|SequenceR|205|196|LLQLVQSNDG

>sp|HERA_PYRFU|DNA double-strand break repair helicase|Pyrococcus furiosus (strain

Query: 1 LLQLVQSNDG 10
LLQ++ NDG
Sbjct: 119 LLQMIYGNDG 128




41|SequenceR|210|201|VANRGLLQLV

>sp|LHRC2_THEBM|ATP-DEPENDENT helicase Lhr-Core protein 2|Thermococcus barophilus (strain DSM

Query: 1 VANRGLLQL 9
VANRGLL L
Sbjct: 742 VANRGLLIL 750


>sp|IXTPA_METTM|DITP/XTP pyrophosphatase|Methanothermobacter marburgensis (strain ATCC

Query: 1 VANRGLLQLV 10
+ NRG+L+L+
Sbjct: 87 IGNRGILKLM 96




42|SequenceR|215|206|QNLGAVANRG

>sp|Y1593_METB6|UPF0200 protein Mboo_1593|Methanoregula boonei (strain DSM 21154

Query: 1 QNLGAVANR 9
+NLGA+ANR
Sbjct: 49 ENLGAMANR 57


>sp|IF2B_PYRCJ|TRANSLATION initiation factor 2 subunit|Pyrobaculum calidifontis (strain DSM

Query: 1 QNLGAVANR 9
QN GA+A R
Sbjct: 41 QNFGAIAKR 49


>sp|PUR5_METM5|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Methanococcus maripaludis (strain C5 /

Query: 1 QNLGAVAN 8
QNLG+VA+
Sbjct: 273 QNLGSVAD 280


>sp|Y516_AERPE|UPF0113 protein APE_0516.1|Aeropyrum pernix (strain ATCC 700893

Query: 2 NLGAVANRG 10
NLG++ RG
Sbjct: 77 NLGSIGERG 85




43|SequenceR|220|211|GQNNVQNLGA

>sp|FDHA_METFO|F420-DEPENDENT formate dehydrogenase subunit alpha|Methanobacterium formicicum

Query: 1 GQNNVQ 6
GQNNVQ
Sbjct: 326 GQNNVQ 331


>sp|FDHA2_METMP|F420-DEPENDENT formate dehydrogenase 2 subunit|Methanococcus maripaludis (strain

Query: 1 GQNNVQ 6
GQNNVQ
Sbjct: 327 GQNNVQ 332


>sp|FDHA_METJA|F420-DEPENDENT formate dehydrogenase subunit alpha|Methanocaldococcus jannaschii

Query: 1 GQNNVQ 6
GQNNVQ
Sbjct: 325 GQNNVQ 330


>sp|PELO_METM7|PROTEIN pelota homolog|Methanococcus maripaludis (strain C7 /

Query: 1 GQNNVQN 7
G+NN+QN
Sbjct: 203 GKNNIQN 209


>sp|PELO_METM6|PROTEIN pelota homolog|Methanococcus maripaludis (strain C6 /

Query: 1 GQNNVQN 7
G+NN+QN
Sbjct: 203 GKNNIQN 209


>sp|FDHA1_METMP|F420-DEPENDENT formate dehydrogenase 1 subunit|Methanococcus maripaludis (strain

Query: 1 GQNNVQ 6
GQNNVQ
Sbjct: 326 GQNNVQ 331


>sp|PELO_METMP|PROTEIN pelota homolog|Methanococcus maripaludis (strain DSM 14266

Query: 1 GQNNVQN 7
G+NN+QN
Sbjct: 203 GRNNIQN 209


>sp|PELO_METM5|PROTEIN pelota homolog|Methanococcus maripaludis (strain C5 /

Query: 1 GQNNVQN 7
G+NN+QN
Sbjct: 203 GKNNIQN 209


>sp|Y3697_METBF|UPF0280 protein Mbar_A3697|Methanosarcina barkeri (strain Fusaro /

Query: 1 GQNNVQNLG 9
GQ+ ++NLG
Sbjct: 140 GQSTIKNLG 148


>sp|GLPR_HALVD|HTH-TYPE transcriptional regulator GlpR|Haloferax volcanii (strain ATCC

Query: 1 GQNNVQNL 8
GQ VQNL
Sbjct: 69 GQKEVQNL 76


>sp|Y1715_METAC|UPF0280 protein MA_1715|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GQNNVQNLG 9
GQ+ ++NLG
Sbjct: 140 GQSPIKNLG 148


>sp|Y2648_METMA|UPF0280 protein MM_2648|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GQNNVQNLG 9
GQ+ ++NLG
Sbjct: 143 GQSPIRNLG 151


>sp|EF2_NANEQ|ELONGATION factor 2|Nanoarchaeum equitans (strain Kin4-M)

Query: 3 NNVQNLG 9
NN++N+G
Sbjct: 19 NNIRNIG 25


>sp|Y309_METBU|UPF0280 protein Mbur_0309|Methanococcoides burtonii (strain DSM 6242

Query: 1 GQNNVQNLG 9
GQ++++N+G
Sbjct: 124 GQSSIRNIG 132




44|SequenceR|225|216|HLPTLGQNNV

>sp|UVRB_METAC|UVRABC system protein B|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 HLPTLG 6
HLPTLG
Sbjct: 294 HLPTLG 299


>sp|SYY_METLZ|TYROSINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 HLPTLG 6
HLPTLG
Sbjct: 184 HLPTLG 189


>sp|IF6_META3|TRANSLATION initiation factor 6|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 LPTLGQNNV 10
LPT+G N V
Sbjct: 145 LPTVGSNGV 153


>sp|RS8E_PYRNV|SMALL ribosomal subunit protein eS8|Pyrobaculum neutrophilum (strain

Query: 1 HLPTLGQNNV 10
+P LG+N+V
Sbjct: 37 QIPKLGENDV 46


>sp|SYR_HALWD|ARGININE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 HLPTLGQNNV 10
HLP GQ+ V
Sbjct: 112 HLPNTGQSVV 121


>sp|IF6_METM5|TRANSLATION initiation factor 6|Methanococcus maripaludis (strain C5 /

Query: 2 LPTLGQNNV 10
LPT+G N V
Sbjct: 145 LPTVGSNGV 153


>sp|IF6_METM7|TRANSLATION initiation factor 6|Methanococcus maripaludis (strain C7 /

Query: 2 LPTLGQNNV 10
LPT+G N V
Sbjct: 145 LPTVGSNGV 153


>sp|IF6_METMP|TRANSLATION initiation factor 6|Methanococcus maripaludis (strain DSM 14266

Query: 2 LPTLGQNNV 10
LPT+G N V
Sbjct: 145 LPTVGSNGV 153


>sp|TOP6A_PYRHO|TYPE 2 DNA topoisomerase 6|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 LPTLGQNNV 10
+PT G NNV
Sbjct: 44 VPTRGLNNV 52


>sp|TOP6A_PYRAB|TYPE 2 DNA topoisomerase 6|Pyrococcus abyssi (strain GE5 /

Query: 2 LPTLGQNNV 10
+PT G NNV
Sbjct: 44 VPTRGLNNV 52


>sp|TRUA_PYRFU|TRNA pseudouridine synthase A|Pyrococcus furiosus (strain ATCC 43587

Query: 1 HLPTLGQN 8
+LP+LG N
Sbjct: 109 YLPSLGMN 116


>sp|Y085_METJA|UNCHARACTERIZED lipoprotein MJ0085|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HLPTLGQ 7
+LPT+GQ
Sbjct: 105 NLPTIGQ 111


>sp|IF6_METVS|TRANSLATION initiation factor 6|Methanococcus vannielii (strain ATCC 35089

Query: 2 LPTLGQNNV 10
LPT+G N V
Sbjct: 145 LPTVGSNGV 153


>sp|IF6_METJA|TRANSLATION initiation factor 6|Methanocaldococcus jannaschii (strain ATCC

Query: 2 LPTLGQNNV 10
LPT+G N V
Sbjct: 147 LPTVGSNAV 155




45|SequenceR|230|221|LQCALHLPTL

>sp|MTRA_METAC|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanosarcina acetivorans (strain

Query: 1 LQCALHLP 8
+ CA HLP
Sbjct: 30 ITCASHLP 37


>sp|KAE1B_METMP|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 QCALHLPTL 10
+C +H P++
Sbjct: 407 ECGIHAPSI 415


>sp|Y1038_PYRHO|PROBABLE ABC transporter permease protein|Pyrococcus horikoshii (strain

Query: 4 ALHLPT 9
A+HLPT
Sbjct: 79 AIHLPT 84


>sp|METXA_METAC|HOMOSERINE O-acetyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 QCALHLPTL 10
+C HLP +
Sbjct: 448 ECVSHLPVI 456


>sp|MCRA_METBF|METHYL-COENZYME M reductase subunit alpha|Methanosarcina barkeri (strain Fusaro /

Query: 4 ALHLPTL 10
A+H+PT+
Sbjct: 221 AIHIPTI 227


>sp|MCRA_METAC|METHYL-COENZYME M reductase subunit alpha|Methanosarcina acetivorans (strain ATCC

Query: 4 ALHLPTL 10
A+H+PT+
Sbjct: 221 AIHIPTI 227




46|SequenceR|235|226|MEQKGLQCAL

>sp|ELP3_METIM|TRNA uridine(34) acetyltransferase|Methanocaldococcus infernus (strain

Query: 1 MEQKGLQC 8
ME+KGL+C
Sbjct: 377 MEKKGLRC 384


>sp|IDI2_PYRNV|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 MEQKGLQC 8
+EQ+GL C
Sbjct: 347 LEQRGLTC 354


>sp|SYR_KORCO|ARGININE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 MEQKGLQCAL 10
MEQKG++ L
Sbjct: 408 MEQKGVRACL 417


>sp|THI4_METMJ|THIAMINE thiazole synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 QKGLQCAL 10
+KG++CAL
Sbjct: 46 EKGVKCAL 53


>sp|HIS3_METJA|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MEQKGLQC 8
+EQKG+ C
Sbjct: 93 VEQKGVAC 100




47|SequenceR|240|231|LLVRVMEQKG

>sp|KHSE_SACI7|HOMOSERINE kinase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 LVRVMEQKG 10
LVR+ME++G
Sbjct: 66 LVRIMEERG 74


>sp|KHSE_SACI1|HOMOSERINE kinase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 LVRVMEQKG 10
LVR+ME++G
Sbjct: 66 LVRIMEERG 74


>sp|KHSE_SACI6|HOMOSERINE kinase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 LVRVMEQKG 10
LVR+ME++G
Sbjct: 66 LVRIMEERG 74


>sp|KHSE_SACI4|HOMOSERINE kinase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 LVRVMEQKG 10
LVR+ME++G
Sbjct: 66 LVRIMEERG 74


>sp|KHSE_SACI3|HOMOSERINE kinase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 2 LVRVMEQKG 10
LVR+ME++G
Sbjct: 66 LVRIMEERG 74


>sp|KHSE_SACI2|HOMOSERINE kinase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 LVRVMEQKG 10
LVR+ME++G
Sbjct: 66 LVRIMEERG 74


>sp|KPRS2_ARCFU|RIBOSE-PHOSPHATE pyrophosphokinase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LLVRVMEQKG 10
L VRVME++G
Sbjct: 37 LYVRVMEKEG 46


>sp|PELO_HALSA|PROTEIN pelota homolog|Halobacterium salinarum (strain ATCC 700922

Query: 2 LVRVMEQKG 10
LVR +EQ+G
Sbjct: 318 LVRTVEQQG 326


>sp|PELO_HALS3|PROTEIN pelota homolog|Halobacterium salinarum (strain ATCC 29341

Query: 2 LVRVMEQKG 10
LVR +EQ+G
Sbjct: 318 LVRTVEQQG 326


>sp|Y1477_PYRHO|UPF0179 protein PH1477|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 LVRVMEQKG 10
LV+VM +KG
Sbjct: 134 LVKVMREKG 142


>sp|NADM_THESM|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Thermococcus sibiricus (strain DSM 12597

Query: 1 LLVRVMEQKG 10
+L+R +++KG
Sbjct: 55 MLIRALDEKG 64




48|SequenceR|245|236|RANCLLLVRV

>sp|Y1555_ARCFU|UNCHARACTERIZED protein AF_1555|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 NCLLLVRV 10
NCLLL RV
Sbjct: 50 NCLLLPRV 57


>sp|SYM_METPE|METHIONINE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 3 NCLLLVR 9
NCL LVR
Sbjct: 471 NCLQLVR 477




49|SequenceR|250|241|GMINCRANCL

>sp|NASC_HALMT|PROBABLE molybdenum cofactor guanylyltransferase|Haloferax mediterranei

Query: 2 MINCRAN 8
+INCRA+
Sbjct: 57 VINCRAD 63


>sp|RL30_CALMQ|LARGE ribosomal subunit protein uL30|Caldivirga maquilingensis (strain

Query: 2 MINCRANCL 10
MIN +A+C+
Sbjct: 132 MINGKASCI 140


>sp|Y1054_METJA|UNCHARACTERIZED protein MJ1054|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 MINCRANC 9
++NC NC
Sbjct: 543 ILNCGINC 550




50|SequenceR|255|246|PYGNPGMINC

>sp|FLAB3_METVS|FLAGELLIN B3|Methanococcus vannielii (strain ATCC 35089

Query: 2 YGNPGMIN 9
YG+PG+IN
Sbjct: 185 YGSPGIIN 192


>sp|Y663_METTH|PUTATIVE ammonium transporter MTH_663|Methanothermobacter thermautotrophicus

Query: 2 YGNPGMI 8
YGNPG +
Sbjct: 352 YGNPGQL 358


>sp|Y362_METJA|UNCHARACTERIZED protein MJ0362|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PYGNPGMI 8
P GN GMI
Sbjct: 24 PIGNSGMI 31


>sp|MTAP_AERPE|S-METHYL-5'-THIOADENOSINE phosphorylase|Aeropyrum pernix (strain ATCC 700893

Query: 1 PYGNP 5
PYGNP
Sbjct: 39 PYGNP 43


>sp|COFG_METKA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 PYGNPGMI 8
P+ NPG+I
Sbjct: 103 PHSNPGVI 110


>sp|HDG_METAC|HYPOXANTHINE DNA glycosylase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 YGNPG 6
YGNPG
Sbjct: 34 YGNPG 38


>sp|DTDA_METPE|D-AMINOACYL-TRNA deacylase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 PYGNPG 6
P GNPG
Sbjct: 80 PTGNPG 85


>sp|Y378_NANEQ|UPF0173 metal-dependent hydrolase NEQ378|Nanoarchaeum equitans (strain

Query: 1 PYGNPG 6
P GNPG
Sbjct: 109 PLGNPG 114


>sp|TRPD_PYRIL|ANTHRANILATE phosphoribosyltransferase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 PYGNPGMI 8
P NPG++
Sbjct: 178 PLANPGLV 185


>sp|TRPD_PYRAR|ANTHRANILATE phosphoribosyltransferase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 PYGNPGMI 8
P NPG++
Sbjct: 180 PLANPGLV 187


>sp|TRPD_PYRAE|ANTHRANILATE phosphoribosyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PYGNPGMI 8
P NPG++
Sbjct: 180 PLANPGLV 187


>sp|TRPD_CALMQ|ANTHRANILATE phosphoribosyltransferase|Caldivirga maquilingensis (strain ATCC

Query: 1 PYGNPGMI 8
P NPG++
Sbjct: 179 PLANPGLV 186


>sp|FLA1_THEVO|FLAGELLIN B1|Thermoplasma volcanium (strain ATCC 51530

Query: 1 PYGNPGMI 8
P G+PG+I
Sbjct: 224 PVGSPGVI 231


>sp|BRIX_AERPE|PROBABLE Brix domain-containing ribosomal biogenesis|Aeropyrum pernix

Query: 3 GNPGMI 8
GNPG+I
Sbjct: 58 GNPGII 63


>sp|CARB_SULTO|CARBAMOYL phosphate synthase large chain|Sulfurisphaera tokodaii (strain DSM

Query: 2 YGNPGMINC 10
YGN +I C
Sbjct: 223 YGNSAVIAC 231


>sp|KDPC_THEAC|POTASSIUM-TRANSPORTING ATPase KdpC subunit|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 GNPGMIN 9
GNP M+N
Sbjct: 87 GNPAMLN 93


>sp|ILVD_HALMA|DIHYDROXY-ACID dehydratase|Haloarcula marismortui (strain ATCC 43049

Query: 1 PYGNPGM 7
P G PGM
Sbjct: 452 PQGGPGM 458


>sp|Y942_METJA|PROBABLE ATP-dependent helicase MJ0942|Methanocaldococcus jannaschii (strain

Query: 2 YGNPGMINC 10
YGN +I+C
Sbjct: 384 YGNAVVIHC 392




51|SequenceR|260|251|MASHIPYGNP

>sp|ORNAT_THEKO|ORNITHINE aminotransferase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 SHIPYGNP 10
+HIPY NP
Sbjct: 180 THIPYPNP 187


>sp|ORNAT_PYRHO|ORNITHINE aminotransferase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 HIPYGNP 10
H+PY NP
Sbjct: 181 HVPYPNP 187


>sp|PYRH_THEAC|URIDYLATE kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 MASHIPYGNP 10
MAS IP NP
Sbjct: 81 MASLIPGSNP 90


>sp|COFH2_METMA|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase 2|Methanosarcina mazei (strain ATCC

Query: 3 SHIPYGNP 10
S +PY NP
Sbjct: 248 SFLPYNNP 255


>sp|COFH2_METAC|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase 2|Methanosarcina acetivorans (strain

Query: 3 SHIPYGNP 10
S +PY NP
Sbjct: 248 SFLPYNNP 255


>sp|ARGD_METKA|ACETYLORNITHINE aminotransferase|Methanopyrus kandleri (strain AV19 /

Query: 4 HIPYGN 9
H+PYG+
Sbjct: 160 HVPYGD 165


>sp|COFH_METBU|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanococcoides burtonii (strain DSM

Query: 3 SHIPYGNP 10
S +PY NP
Sbjct: 242 SFMPYNNP 249


>sp|ATGT_AERPE|TRNA-GUANINE(15) transglycosylase|Aeropyrum pernix (strain ATCC 700893

Query: 4 HIPYGNP 10
H+P+G P
Sbjct: 212 HLPWGRP 218


>sp|MTAP_PYRHO|S-METHYL-5'-THIOADENOSINE phosphorylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 HIPYGNP 10
H PYG P
Sbjct: 25 HTPYGRP 31


>sp|MTAP_PYRFU|S-METHYL-5'-THIOADENOSINE phosphorylase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 HIPYGNP 10
H PYG P
Sbjct: 25 HTPYGRP 31


>sp|MTAP_PYRAB|S-METHYL-5'-THIOADENOSINE phosphorylase|Pyrococcus abyssi (strain GE5 /

Query: 4 HIPYGNP 10
H PYG P
Sbjct: 25 HTPYGRP 31


>sp|MTAP_AERPE|S-METHYL-5'-THIOADENOSINE phosphorylase|Aeropyrum pernix (strain ATCC 700893

Query: 6 PYGNP 10
PYGNP
Sbjct: 39 PYGNP 43


>sp|TRUD_HALSA|PROBABLE tRNA pseudouridine synthase D|Halobacterium salinarum (strain ATCC

Query: 1 MASHIPYGNP 10
MA +P+G P
Sbjct: 289 MARGLPFGEP 298


>sp|TRUD_HALS3|PROBABLE tRNA pseudouridine synthase D|Halobacterium salinarum (strain ATCC

Query: 1 MASHIPYGNP 10
MA +P+G P
Sbjct: 289 MARGLPFGEP 298


>sp|ARGD_METTH|ACETYLORNITHINE aminotransferase|Methanothermobacter thermautotrophicus (strain

Query: 4 HIPYGN 9
H+PYG+
Sbjct: 161 HVPYGD 166


>sp|MTAP_THEKO|S-METHYL-5'-THIOADENOSINE phosphorylase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 HIPYGNP 10
H PYG P
Sbjct: 25 HTPYGRP 31


>sp|THIC_METVS|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus vannielii (strain ATCC 35089

Query: 4 HIPYGN 9
H+PY N
Sbjct: 268 HVPYNN 273


>sp|THIC_METMP|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus maripaludis (strain DSM 14266

Query: 4 HIPYGN 9
H+PY N
Sbjct: 268 HVPYNN 273


>sp|THIC_METM7|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus maripaludis (strain C7 /

Query: 4 HIPYGN 9
H+PY N
Sbjct: 268 HVPYNN 273


>sp|THIC_METM6|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus maripaludis (strain C6 /

Query: 4 HIPYGN 9
H+PY N
Sbjct: 268 HVPYNN 273


>sp|THIC_METM5|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus maripaludis (strain C5 /

Query: 4 HIPYGN 9
H+PY N
Sbjct: 268 HVPYNN 273


>sp|SYM_AERPE|METHIONINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 MASHIPYGNP 10
+ASH PY P
Sbjct: 310 LASHDPYVLP 319


>sp|TF2B_AERPE|TRANSCRIPTION initiation factor IIB|Aeropyrum pernix (strain ATCC 700893

Query: 1 MASHIPY 7
MAS IPY
Sbjct: 1 MASEIPY 7


>sp|SYY_PYRCJ|TYROSINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 MASHIPYG 8
+ +HIP+G
Sbjct: 180 LGAHIPHG 187


>sp|DCDB_METS3|DCTP deaminase, dUMP-forming|Methanobrevibacter smithii (strain ATCC

Query: 3 SHIPYGNP 10
+ +PYG+P
Sbjct: 162 AELPYGHP 169


>sp|FRHA_METBF|COENZYME F420 hydrogenase subunit alpha|Methanosarcina barkeri (strain

Query: 1 MASHIPYGN 9
+A HIP G+
Sbjct: 360 LADHIPQGD 368


>sp|SYY_PYRAR|TYROSINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 MASHIPYG 8
+ +HIP+G
Sbjct: 180 LGAHIPHG 187


>sp|SYY1_PYRAE|TYROSINE--TRNA ligase 1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 MASHIPYG 8
+ +HIP+G
Sbjct: 180 LGAHIPHG 187


>sp|Y1468_METJA|UNCHARACTERIZED protein MJ1468|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 6 PYGNP 10
PYGNP
Sbjct: 459 PYGNP 463




52|SequenceR|265|256|KQSFKMASHI

***** No hits found ******


53|SequenceR|270|261|MEACGKQSFK

>sp|DP2L_METMA|DNA polymerase II large subunit|Methanosarcina mazei (strain ATCC

Query: 3 ACGKQSF 9
ACGK+S+
Sbjct: 657 ACGKESY 663


>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1 (strain

Query: 3 ACGKQSFK 10
ACG +S+K
Sbjct: 632 ACGTESYK 639


>sp|ACD_METJA|ACETATE--COA ligase [ADP-forming]|Methanocaldococcus jannaschii (strain ATCC

Query: 1 MEACGKQSFK 10
+E CGK+ K
Sbjct: 86 LEECGKKGVK 95


>sp|DP2L_METBF|DNA polymerase II large subunit|Methanosarcina barkeri (strain Fusaro /

Query: 3 ACGKQSF 9
ACGK+++
Sbjct: 651 ACGKETY 657


>sp|DP2L_METAC|DNA polymerase II large subunit|Methanosarcina acetivorans (strain ATCC

Query: 3 ACGKQSF 9
ACGK+++
Sbjct: 650 ACGKETY 656


>sp|QUEE_METJA|7-CARBOXY-7-DEAZAGUANINE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MEACGK 6
MEACG+
Sbjct: 219 MEACGE 224


>sp|GUAAA_METVS|GMP synthase [glutamine-hydrolyzing] subunit A|Methanococcus vannielii

Query: 2 EACGKQSFK 10
E CG ++FK
Sbjct: 143 EICGVEAFK 151




54|SequenceR|275|266|DMSIIMEACG

>sp|QUEE_METJA|7-CARBOXY-7-DEAZAGUANINE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 IMEACG 10
IMEACG
Sbjct: 218 IMEACG 223


>sp|Y462_METMA|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina mazei (strain

Query: 1 DMSIIMEACG 10
D SI+M CG
Sbjct: 388 DKSILMALCG 397


>sp|Y3551_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 1 DMSIIMEACG 10
D SI+M CG
Sbjct: 388 DKSILMALCG 397




55|SequenceR|280|271|HIQSSDMSII

>sp|GVPC_HALMT|GAS vesicle protein C|Haloferax mediterranei (strain ATCC 33500

Query: 1 HIQSSDMSI 9
H+Q+ DM+I
Sbjct: 354 HLQTHDMTI 362


>sp|GVPC1_HALSA|GAS vesicle protein C1|Halobacterium salinarum (strain ATCC 700922

Query: 1 HIQSSDMSI 9
H+Q+ DM+I
Sbjct: 355 HLQTHDMTI 363


>sp|CBIA_METVS|COBYRINATE a,c-diamide synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 HIQSSDMSII 10
H Q+ D+SII
Sbjct: 75 HSQNKDISII 84




56|SequenceR|285|276|RPDKSHIQSS

>sp|HIS4_META3|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanococcus aeolicus (strain

Query: 2 PDKSHIQ 8
PDK HI+
Sbjct: 22 PDKKHIE 28


>sp|COFC_METAR|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocella arvoryzae (strain DSM 22066

Query: 1 RPDKSHI 7
RPDK H+
Sbjct: 126 RPDKYHV 132


>sp|HIS4_METVS|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanococcus vannielii (strain

Query: 2 PDKSHIQ 8
PDK H++
Sbjct: 22 PDKKHVE 28


>sp|HIS4_METVA|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanococcus vannielii

Query: 2 PDKSHIQ 8
PDK H++
Sbjct: 22 PDKKHVE 28


>sp|HIS4_METMP|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanococcus maripaludis

Query: 2 PDKSHIQ 8
PDK H++
Sbjct: 22 PDKKHVE 28


>sp|HIS4_METM7|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanococcus maripaludis

Query: 2 PDKSHIQ 8
PDK H++
Sbjct: 22 PDKKHVE 28


>sp|HIS4_METM6|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanococcus maripaludis

Query: 2 PDKSHIQ 8
PDK H++
Sbjct: 22 PDKKHVE 28


>sp|HIS4_METM5|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanococcus maripaludis

Query: 2 PDKSHIQ 8
PDK H++
Sbjct: 22 PDKKHVE 28




57|SequenceR|290|281|PSAGYRPDKS

>sp|SYFA_PYRAB|PHENYLALANINE--TRNA ligase alpha subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 PSAGYRPDKS 10
P GY PD+S
Sbjct: 296 PEKGYLPDES 305


>sp|UPPP_PYRIL|UNDECAPRENYL-DIPHOSPHATASE islandicum (strain DSM 4184

Query: 4 GYRPDKS 10
GYRPD++
Sbjct: 180 GYRPDEA 186


>sp|SYFA_PYRHO|PHENYLALANINE--TRNA ligase alpha subunit|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PSAGYRPDKS 10
P GY PD++
Sbjct: 295 PEKGYLPDEN 304


>sp|SYFA_THEON|PHENYLALANINE--TRNA ligase alpha subunit|Thermococcus onnurineus (strain NA1)

Query: 1 PSAGYRPDK 9
P +GY P+K
Sbjct: 296 PKSGYLPNK 304


>sp|PSB2_PYRAE|PROTEASOME subunit beta 2|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 GYRPD 8
GYRPD
Sbjct: 150 GYRPD 154


>sp|PSB_METTH|PROTEASOME subunit beta|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 PSAGYRPDK 9
PS G PDK
Sbjct: 125 PSGGMIPDK 133


>sp|CFBE_METBF|COENZYME F(430) synthetase|Methanosarcina barkeri (strain Fusaro /

Query: 3 AGYRPD 8
AG+RPD
Sbjct: 180 AGFRPD 185


>sp|SYY_METST|TYROSINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 PSAGYRP 7
P GYRP
Sbjct: 188 PRLGYRP 194


>sp|OTC_PYRHO|ORNITHINE carbamoyltransferase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 GYRPDK 9
GY PDK
Sbjct: 189 GYEPDK 194


>sp|MOAA_HALSA|PROBABLE GTP 3',8-cyclase|Halobacterium salinarum (strain ATCC 700922

Query: 1 PSAGYRPD 8
P+AGY P+
Sbjct: 165 PTAGYVPE 172


>sp|MOAA_HALS3|PROBABLE GTP 3',8-cyclase|Halobacterium salinarum (strain ATCC 29341

Query: 1 PSAGYRPD 8
P+AGY P+
Sbjct: 165 PTAGYVPE 172


>sp|HDRA_METMA|FERREDOXIN:COB-COM heterodisulfide reductase subunit A|Methanosarcina mazei (strain

Query: 2 SAGYRPDKS 10
S GY P K+
Sbjct: 488 STGYEPSKA 496


>sp|HISX_METMA|HISTIDINOL dehydrogenase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 GYRPDK 9
GYRP K
Sbjct: 428 GYRPSK 433




58|SequenceR|295|286|KAWHLPSAGY

>sp|THII_PYRAE|TRNA sulfurtransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 KAWHLPSA 8
K WHLP A
Sbjct: 412 KKWHLPGA 419


>sp|XPB2_SULTO|DNA 3'-5' translocase XPB2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 HLPSAGY 10
HLPS GY
Sbjct: 178 HLPSEGY 184


>sp|SYY_METMJ|TYROSINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 4 HLPSAGY 10
HLPS GY
Sbjct: 184 HLPSIGY 190


>sp|Y123_ARCFU|UNCHARACTERIZED protein AF_0123|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KAWHLPSAGY 10
+ WHLP++ +
Sbjct: 49 ETWHLPASEF 58


>sp|NIFD_METTM|NITROGENASE molybdenum-iron protein alpha chain|Methanothermobacter

Query: 1 KAWHLP 6
K WHLP
Sbjct: 347 KNWHLP 352


>sp|NIFD_METTH|NITROGENASE molybdenum-iron protein alpha chain|Methanothermobacter

Query: 1 KAWHLP 6
K WHLP
Sbjct: 347 KNWHLP 352


>sp|SYT_THEVO|THREONINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 4 HLPSAGY 10
H+PS GY
Sbjct: 169 HVPSTGY 175


>sp|SYT_THEAC|THREONINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 HLPSAGY 10
H+PS GY
Sbjct: 169 HVPSTGY 175


>sp|SYY_METLZ|TYROSINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 4 HLPSAGY 10
HLP+ GY
Sbjct: 184 HLPTLGY 190


>sp|Y1684_METTH|UNCHARACTERIZED protein MTH_1684|Methanothermobacter thermautotrophicus (strain

Query: 2 AWHLPSAGY 10
AW PS Y
Sbjct: 378 AWSCPSGAY 386


>sp|PSA_ARCFU|PROTEASOME subunit alpha|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 HLPSAGY 10
HLP GY
Sbjct: 2 HLPQMGY 8


>sp|GLYA_SULAC|SERINE hydroxymethyltransferase|Sulfolobus acidocaldarius (strain ATCC

Query: 1 KAWHLP 6
KAWH P
Sbjct: 209 KAWHNP 214


>sp|GLYA_SULTO|SERINE hydroxymethyltransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 KAWHLP 6
KAWH P
Sbjct: 209 KAWHNP 214


>sp|DYRB_HALVO|DIHYDROFOLATE reductase HdrB|Haloferax volcanii (Halobacterium volcanii)

Query: 3 WHLP 6
WHLP
Sbjct: 39 WHLP 42


>sp|SYV_NANEQ|VALINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 3 WHLPSAGY 10
W+ P GY
Sbjct: 399 WYCPKCGY 406


>sp|RL3_METBU|LARGE ribosomal subunit protein uL3|Methanococcoides burtonii (strain DSM

Query: 2 AWHLPSAG 9
+W +P AG
Sbjct: 247 SWRVPQAG 254


>sp|GLPK2_SACS2|GLYCEROL kinase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 HLPSAGY 10
H PS GY
Sbjct: 38 HYPSPGY 44




59|SequenceR|300|291|AMEANKAWHL

>sp|AATA_SULAC|A-TYPE ATP synthase subunit A|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 AMEANKAWHL 10
A+E NK WH+
Sbjct: 112 ALERNKKWHV 121


>sp|AROE_SULTO|SHIKIMATE dehydrogenase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 AMEANKAW 8
AMEA K W
Sbjct: 232 AMEAEKIW 239


>sp|PUR2_PYRHO|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 MEANKAW 8
+E NKAW
Sbjct: 100 LETNKAW 106


>sp|PUR2_PYRFU|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 MEANKAW 8
+E NKAW
Sbjct: 101 LETNKAW 107


>sp|PUR2_PYRAB|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 MEANKAW 8
+E NKAW
Sbjct: 100 LETNKAW 106


>sp|FLAJ_METJA|FLAGELLA accessory protein J|Methanocaldococcus jannaschii (strain ATCC

Query: 1 AMEANKAWHL 10
+++NK+W L
Sbjct: 382 GIDSNKSWRL 391


>sp|AROE_SULAC|SHIKIMATE dehydrogenase (NADP(+))|Sulfolobus acidocaldarius (strain ATCC

Query: 1 AMEANKAW 8
AMEA + W
Sbjct: 235 AMEAERIW 242


>sp|PUR8_METTH|ADENYLOSUCCINATE lyase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 AMEANKAWH 9
A+E N WH
Sbjct: 304 ALENNPLWH 312


>sp|SYI_META3|ISOLEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 MEANKAW 8
+ ANKAW
Sbjct: 633 LSANKAW 639


>sp|SYI_METMP|ISOLEUCINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 MEANKAW 8
+ ANKAW
Sbjct: 626 LSANKAW 632


>sp|TDXH2_PICTO|PEROXIREDOXIN 2|Picrophilus torridus (strain ATCC 700027

Query: 3 EANKAWHL 10
E NK W++
Sbjct: 191 EGNKTWYI 198


>sp|CBIJ_METJA|COBALT-PRECORRIN-6A reductase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AMEANKAWHL 10
A +ANK +H+
Sbjct: 123 AKKANKVFHM 132


>sp|SYL_PYRIL|LEUCINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 AMEANKAW 8
A+EA +AW
Sbjct: 764 ALEAARAW 771


>sp|RNP3_PYRAB|RIBONUCLEASE P protein component 3|Pyrococcus abyssi (strain GE5 /

Query: 4 ANKAWHL 10
AN+ WH+
Sbjct: 170 ANEKWHI 176




60|SequenceR|305|296|KLLMRAMEAN

>sp|Y300_METJA|UNCHARACTERIZED HTH-type transcriptional regulator MJ0300|Methanocaldococcus

Query: 1 KLLMRAMEAN 10
KLLMRA+ N
Sbjct: 81 KLLMRAIHEN 90


>sp|SECY_HALVD|PROTEIN translocase subunit SecY|Haloferax volcanii (strain ATCC 29605

Query: 2 LLMRAMEAN 10
+L+RA++AN
Sbjct: 296 ILVRALQAN 304


>sp|SECY_HALSA|PROTEIN translocase subunit SecY|Halobacterium salinarum (strain ATCC

Query: 2 LLMRAMEAN 10
+L+RA++AN
Sbjct: 296 ILVRALQAN 304


>sp|SECY_HALMA|PROTEIN translocase subunit SecY|Haloarcula marismortui (strain ATCC 43049

Query: 2 LLMRAMEAN 10
+L+RA++AN
Sbjct: 296 ILVRALQAN 304




61|SequenceR|310|301|VNCGRKLLMR

>sp|RRP42_ARCFU|EXOSOME complex component Rrp42|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VNCGRKL 7
+NC RKL
Sbjct: 246 INCARKL 252


>sp|SYI_PYRAE|ISOLEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 CGRKLLMR 10
CG KL++R
Sbjct: 405 CGSKLILR 412


>sp|LONB_THEKO|ARCHAEAL Lon protease|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 NCGRK 6
NCGRK
Sbjct: 186 NCGRK 190


>sp|METE_SACS2|METHIONINE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 NCGRKLLMR 10
+CG KLL R
Sbjct: 295 DCGLKLLSR 303


>sp|METE_SACI7|METHIONINE synthase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 NCGRKLLMR 10
+CG KLL R
Sbjct: 295 DCGLKLLSR 303


>sp|METE_SACI6|METHIONINE synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 NCGRKLLMR 10
+CG KLL R
Sbjct: 295 DCGLKLLSR 303


>sp|METE_SACI4|METHIONINE synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 NCGRKLLMR 10
+CG KLL R
Sbjct: 295 DCGLKLLSR 303


>sp|METE_SACI3|METHIONINE synthase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 2 NCGRKLLMR 10
+CG KLL R
Sbjct: 295 DCGLKLLSR 303


>sp|METE_SACI2|METHIONINE synthase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 NCGRKLLMR 10
+CG KLL R
Sbjct: 295 DCGLKLLSR 303


>sp|METE_SACI1|METHIONINE synthase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 NCGRKLLMR 10
+CG KLL R
Sbjct: 295 DCGLKLLSR 303


>sp|TMG10_PYRAB|TRNA (guanine(10)-N2)-dimethyltransferase|Pyrococcus abyssi (strain GE5

Query: 1 VNCGRKL 7
V CGRKL
Sbjct: 129 VYCGRKL 135


>sp|AMZA_THEKO|ARCHAEMETZINCIN kodakarensis (strain ATCC BAA-918

Query: 2 NCGRKLL 8
NC RKLL
Sbjct: 173 NCERKLL 179


>sp|TIAS_IGNH4|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Ignicoccus hospitalis (strain

Query: 1 VNCGRKLLMR 10
V+ G+K LMR
Sbjct: 322 VSMGKKTLMR 331


>sp|METE_PYRHO|METHIONINE synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 NCGRKLLMR 10
+CG KLL R
Sbjct: 293 DCGMKLLDR 301


>sp|SYP_METTH|PROLINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 VNCGRK 6
+NCGR+
Sbjct: 465 INCGRE 470


>sp|METE_SULTO|METHIONINE synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 NCGRKLLMR 10
+CG KLL R
Sbjct: 293 DCGLKLLPR 301


>sp|METE_SULAC|METHIONINE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 NCGRKLLMR 10
+CG KLL R
Sbjct: 294 DCGLKLLPR 302


>sp|Y182_ARCFU|UNCHARACTERIZED protein AF_0182|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VNCGRKLL 8
+N GRKLL
Sbjct: 333 LNIGRKLL 340


>sp|RS12_THEVO|SMALL ribosomal subunit protein uS12|Thermoplasma volcanium (strain

Query: 1 VNCGRKLL 8
+N GRKLL
Sbjct: 5 LNAGRKLL 12


>sp|RS12_THEAC|SMALL ribosomal subunit protein uS12|Thermoplasma acidophilum (strain

Query: 1 VNCGRKLL 8
+N GRKLL
Sbjct: 5 INAGRKLL 12




62|SequenceR|315|306|SSTSNVNCGR

>sp|MOBB_METJA|PUTATIVE molybdopterin-guanine dinucleotide biosynthesis

Query: 3 TSNVNCG 9
T N+NCG
Sbjct: 150 TMNLNCG 156




63|SequenceR|320|311|ATNGASSTSN

>sp|DADD_METTP|5'-DEOXYADENOSINE deaminase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 ATNGASSTSN 10
T+GASS +N
Sbjct: 284 GTDGASSNNN 293




64|SequenceR|325|316|VAVHLATNGA

>sp|Y1257_METJA|UNCHARACTERIZED protein MJ1257|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 AVHLATNG 9
A HL TNG
Sbjct: 288 AKHLKTNG 295


>sp|CDPAS_HALSA|CDP-ARCHAEOL synthase|Halobacterium salinarum (strain ATCC 700922

Query: 2 AVHLATNG 9
A+HL TNG
Sbjct: 162 ALHLLTNG 169


>sp|CDPAS_HALS3|CDP-ARCHAEOL synthase|Halobacterium salinarum (strain ATCC 29341

Query: 2 AVHLATNG 9
A+HL TNG
Sbjct: 162 ALHLLTNG 169


>sp|SYA_METVS|ALANINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 VAVHLATNG 9
+A +LATNG
Sbjct: 822 IADNLATNG 830


>sp|GCSPA_THEKO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermococcus

Query: 2 AVHLATNG 9
A+HLAT G
Sbjct: 340 AIHLATLG 347


>sp|GCSPA_THEGJ|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermococcus

Query: 2 AVHLATNG 9
A+HLAT G
Sbjct: 342 AIHLATLG 349




65|SequenceR|330|321|FRNRMVAVHL

>sp|AROD_SACS2|3-DEHYDROQUINATE dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 FRNRMVAVH 9
+ NR+V+VH
Sbjct: 106 YDNRIVSVH 114


>sp|MCRC_METTM|METHYL-COENZYME M reductase I operon|Methanothermobacter marburgensis (strain ATCC

Query: 2 RNRMVAVHL 10
R+R++ VHL
Sbjct: 102 RHRLLVVHL 110




66|SequenceR|335|326|VIACDFRNRM

>sp|SYR_SACS2|ARGININE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 VIACDFRNR 9
VIA D RNR
Sbjct: 226 VIANDLRNR 234


>sp|COFH_ARCFU|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Archaeoglobus fulgidus (strain ATCC

Query: 4 CDFRNR 9
C FRNR
Sbjct: 60 CSFRNR 65


>sp|TRI_THEVO|TRICORN protease|Thermoplasma volcanium (strain ATCC 51530

Query: 2 IACDFR 7
IACDF+
Sbjct: 725 IACDFK 730


>sp|TRI_THEAC|TRICORN protease|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 IACDFR 7
IACDF+
Sbjct: 765 IACDFK 770


>sp|SYV_PICTO|VALINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 IACDFRN 8
++CDF+N
Sbjct: 125 LSCDFKN 131


>sp|ACD2_ARCFU|ACETATE--COA ligase [ADP-forming] II|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VIACDFRNRM 10
VIAC + NR+
Sbjct: 596 VIACVWANRL 605




67|SequenceR|340|331|GHTLLVIACD

>sp|NIFH2_METTH|NITROGENASE iron protein 2|Methanothermobacter thermautotrophicus (strain

Query: 2 HTLLVIACD 10
H +LVI CD
Sbjct: 29 HRVLVIGCD 37


>sp|GLMS_METJA|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Methanocaldococcus jannaschii

Query: 5 LVIACD 10
LVIACD
Sbjct: 821 LVIACD 826


>sp|NIFH_METVO|NITROGENASE iron protein|Methanococcus voltae

Query: 1 GHTLLVIACD 10
G +LV+ CD
Sbjct: 29 GKKVLVVGCD 38


>sp|NIFH_METJA|NITROGENASE iron protein|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GHTLLVIACD 10
G +LV+ CD
Sbjct: 29 GKKVLVVGCD 38


>sp|PYRH_METBF|URIDYLATE kinase|Methanosarcina barkeri (strain Fusaro /

Query: 2 HTLLVIA 8
HTLLV+A
Sbjct: 35 HTLLVVA 41


>sp|GVPD_HALMT|PROTEIN GvpD|Haloferax mediterranei (strain ATCC 33500

Query: 1 GHTLLV 6
GHTLLV
Sbjct: 32 GHTLLV 37


>sp|NIFH2_METIV|NITROGENASE iron protein 2|Methanobacterium ivanovii

Query: 2 HTLLVIACD 10
+ +LVI CD
Sbjct: 30 YNVLVIGCD 38


>sp|HJE_SACS2|CROSSOVER junction endodeoxyribonuclease Hje|Saccharolobus solfataricus

Query: 1 GHTLLVIAC 9
G+TLL I C
Sbjct: 45 GNTLLSIEC 53


>sp|AMZA_HALMA|ARCHAEMETZINCIN marismortui (strain ATCC 43049

Query: 1 GHTLLVIACD 10
GHTL + CD
Sbjct: 133 GHTLGLEHCD 142


>sp|AMZA_HALSA|ARCHAEMETZINCIN salinarum (strain ATCC 700922

Query: 1 GHTLLVIACD 10
GHTL + CD
Sbjct: 133 GHTLGLEHCD 142


>sp|AMZA_HALS3|ARCHAEMETZINCIN salinarum (strain ATCC 29341

Query: 1 GHTLLVIACD 10
GHTL + CD
Sbjct: 133 GHTLGLEHCD 142


>sp|AMZA_NATPD|ARCHAEMETZINCIN pharaonis (strain ATCC 35678

Query: 1 GHTLLVIACD 10
GHTL + CD
Sbjct: 133 GHTLGLEHCD 142




68|SequenceR|345|336|ADANAGHTLL

>sp|SYI_NATPD|ISOLEUCINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 ADANAGH 7
AD NAGH
Sbjct: 1034 ADLNAGH 1040


>sp|FTTA_CENSY|TRANSCRIPTION termination factor FttA|Cenarchaeum symbiosum (strain A)

Query: 3 ANAGHTL 9
ANAGH L
Sbjct: 333 ANAGHIL 339


>sp|EF2_CENSY|ELONGATION factor 2|Cenarchaeum symbiosum (strain A)

Query: 1 ADANAGHTL 9
AD+ AG+TL
Sbjct: 363 ADSRAGNTL 371


>sp|PURA_THEVO|ADENYLOSUCCINATE synthetase|Thermoplasma volcanium (strain ATCC 51530

Query: 4 NAGHTLL 10
NAGHT++
Sbjct: 47 NAGHTVV 53


>sp|PURA_THEAC|ADENYLOSUCCINATE synthetase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 NAGHTLL 10
NAGHT++
Sbjct: 46 NAGHTVV 52


>sp|PURA_PICTO|ADENYLOSUCCINATE synthetase|Picrophilus torridus (strain ATCC 700027

Query: 4 NAGHTLL 10
NAGHT++
Sbjct: 37 NAGHTVV 43


>sp|PURA1_METAC|ADENYLOSUCCINATE synthetase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 NAGHTLL 10
NAGHT++
Sbjct: 38 NAGHTVV 44


>sp|PURA_METVS|ADENYLOSUCCINATE synthetase|Methanococcus vannielii (strain ATCC 35089

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 40 NAGHTV 45


>sp|PURA_METTP|ADENYLOSUCCINATE synthetase|Methanothrix thermoacetophila (strain DSM 6194

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 37 NAGHTV 42


>sp|PURA_METMP|ADENYLOSUCCINATE synthetase|Methanococcus maripaludis (strain DSM 14266

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 40 NAGHTV 45


>sp|PURA_METM7|ADENYLOSUCCINATE synthetase|Methanococcus maripaludis (strain C7 /

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 40 NAGHTV 45


>sp|PURA_METM6|ADENYLOSUCCINATE synthetase|Methanococcus maripaludis (strain C6 /

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 40 NAGHTV 45


>sp|PURA_METM5|ADENYLOSUCCINATE synthetase|Methanococcus maripaludis (strain C5 /

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 40 NAGHTV 45


>sp|PURA_METJA|ADENYLOSUCCINATE synthetase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 46 NAGHTV 51


>sp|PURA_ARCFU|ADENYLOSUCCINATE synthetase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 40 NAGHTV 45


>sp|PURA2_METAC|ADENYLOSUCCINATE synthetase 2|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 37 NAGHTV 42


>sp|PURA_METBF|ADENYLOSUCCINATE synthetase|Methanosarcina barkeri (strain Fusaro /

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 37 NAGHTV 42


>sp|PURA_METBU|ADENYLOSUCCINATE synthetase|Methanococcoides burtonii (strain DSM 6242

Query: 4 NAGHTLL 10
NAGHT++
Sbjct: 37 NAGHTVV 43


>sp|PURA_HALSA|ADENYLOSUCCINATE synthetase|Halobacterium salinarum (strain ATCC 700922

Query: 4 NAGHTLL 10
NAGHT++
Sbjct: 37 NAGHTVV 43


>sp|PURA_HALS3|ADENYLOSUCCINATE synthetase|Halobacterium salinarum (strain ATCC 29341

Query: 4 NAGHTLL 10
NAGHT++
Sbjct: 37 NAGHTVV 43


>sp|PURA_HALMA|ADENYLOSUCCINATE synthetase|Haloarcula marismortui (strain ATCC 43049

Query: 4 NAGHTLL 10
NAGHT++
Sbjct: 37 NAGHTVV 43


>sp|PURA_METMA|ADENYLOSUCCINATE synthetase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 NAGHTL 9
NAGHT+
Sbjct: 37 NAGHTV 42




69|SequenceR|350|341|GHEGRADANA

>sp|IDI2_METB6|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Methanoregula boonei (strain DSM 21154

Query: 1 GHEGRADANA 10
GH G DANA
Sbjct: 73 GHPGTKDANA 82


>sp|SYE_PICTO|GLUTAMATE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 HEGRADANA 10
H+GRAD +
Sbjct: 18 HDGRADVKS 26


>sp|GAD_THETE|D-GLUCONATE dehydratase|Thermoproteus tenax

Query: 2 HEGRADANA 10
H GR +ANA
Sbjct: 304 HHGRFNANA 312


>sp|SYK_NATPD|LYSINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 GHEGRADANA 10
GHEGRA A
Sbjct: 235 GHEGRATFRA 244


>sp|SYE_THEAC|GLUTAMATE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 HEGRAD 7
HEG+AD
Sbjct: 17 HEGKAD 22


>sp|RIBA_ARCFU|GTP cyclohydrolase-2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GHEGRA 6
GHEGR
Sbjct: 271 GHEGRG 276


>sp|GLT_PYRHO|SODIUM-ASPARTATE symporter Glt(Ph)|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GHEGRADA 8
GH G ADA
Sbjct: 31 GHYGYADA 38


>sp|G1PDH_PYRHO|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 HEGRADANA 10
H+G A ANA
Sbjct: 119 HDGIASANA 127


>sp|RL24_ARCFU|LARGE ribosomal subunit protein uL24|Archaeoglobus fulgidus (strain

Query: 1 GHEGR 5
GHEGR
Sbjct: 63 GHEGR 67




70|SequenceR|355|346|HLPTNGHEGR

>sp|SURE_NATPD|5'-NUCLEOTIDASE SurE|Natronomonas pharaonis (strain ATCC 35678

Query: 3 PTNGHEG 9
PT GHEG
Sbjct: 242 PTTGHEG 248


>sp|HDRA_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit A|Methanococcus

Query: 3 PTNGHEGR 10
PT+GHE R
Sbjct: 364 PTHGHEIR 371


>sp|RL4_SULTO|LARGE ribosomal subunit protein uL4|Sulfurisphaera tokodaii (strain DSM

Query: 1 HLPTNGHEGR 10
HL GH GR
Sbjct: 235 HLAPGGHPGR 244


>sp|HDRA_METJA|COB--COM heterodisulfide reductase iron-sulfur subunit|Methanocaldococcus

Query: 3 PTNGHEGR 10
PT GHE R
Sbjct: 363 PTGGHEIR 370


>sp|RL4_SULAC|LARGE ribosomal subunit protein uL4|Sulfolobus acidocaldarius (strain

Query: 1 HLPTNGHEGR 10
HL GH GR
Sbjct: 235 HLAPGGHPGR 244


>sp|RL4_AERPE|LARGE ribosomal subunit protein uL4|Aeropyrum pernix (strain ATCC 700893

Query: 1 HLPTNGHEGR 10
HL GH GR
Sbjct: 242 HLAPGGHPGR 251


>sp|DNLI2_HALWD|DNA ligase 2|Haloquadratum walsbyi (strain DSM 16790

Query: 4 TNGHEG 9
+NGHEG
Sbjct: 456 SNGHEG 461


>sp|SYM_PICTO|METHIONINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 LPTNGHEGR 10
+P NG EG+
Sbjct: 241 IPLNGFEGK 249


>sp|FKBPL_METTH|LONG-TYPE peptidyl-prolyl cis-trans isomerase|Methanothermobacter

Query: 2 LPTNGHEGR 10
L GHEGR
Sbjct: 111 LTVEGHEGR 119


>sp|DUT_ARCFU|PROBABLE deoxyuridine 5'-triphosphate nucleotidohydrolase|Archaeoglobus

Query: 3 PTNGHEG 9
PT G+EG
Sbjct: 153 PTKGYEG 159


>sp|PELO_IGNH4|PROTEIN pelota homolog|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 LPTNGHEGR 10
LP G EGR
Sbjct: 158 LPGKGDEGR 166


>sp|RIBA_ARCFU|GTP cyclohydrolase-2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 6 GHEGR 10
GHEGR
Sbjct: 271 GHEGR 275


>sp|SYK_NATPD|LYSINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 6 GHEGR 10
GHEGR
Sbjct: 235 GHEGR 239


>sp|YF1B_METJA|UNCHARACTERIZED protein MJ1516.1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LPTNGHEG 9
+P NGH G
Sbjct: 31 IPYNGHNG 38


>sp|GCH1L_HALSA|GTP cyclohydrolase 1 type 2|Halobacterium salinarum (strain ATCC 700922

Query: 1 HLPTNGH 7
HLP +GH
Sbjct: 97 HLPLDGH 103


>sp|NIFH_METHJ|NITROGENASE iron protein|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 HLPTNGHEG 9
+LPT H+G
Sbjct: 269 YLPTIDHQG 277


>sp|Y1257_METJA|UNCHARACTERIZED protein MJ1257|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HLPTNGH 7
HL TNG+
Sbjct: 290 HLKTNGY 296


>sp|RL3_METAR|LARGE ribosomal subunit protein uL3|Methanocella arvoryzae (strain DSM

Query: 1 HLPTNGHE 8
HLP NG++
Sbjct: 114 HLPKNGYK 121


>sp|RL30_METTH|LARGE ribosomal subunit protein uL30|Methanothermobacter

Query: 1 HLPTNGHEG 9
H P G+EG
Sbjct: 118 HPPRKGYEG 126


>sp|RL30_METAR|LARGE ribosomal subunit protein uL30|Methanocella arvoryzae (strain DSM

Query: 1 HLPTNGHEG 9
H P GH+G
Sbjct: 119 HPPRKGHKG 127


>sp|CYAS_METPS|CYSTEATE synthase|Methanocella paludicola (strain DSM 17711

Query: 2 LPTNGH 7
LPT GH
Sbjct: 54 LPTRGH 59




71|SequenceR|360|351|KSMALHLPTN

>sp|PYRI_THEAC|ASPARTATE carbamoyltransferase regulatory chain|Thermoplasma acidophilum

Query: 2 SMALHLPTN 10
S+A+H+P+N
Sbjct: 42 SLAIHVPSN 50


>sp|ATGT_METM5|TRNA-GUANINE(15) transglycosylase|Methanococcus maripaludis (strain C5 /

Query: 5 LHLPTN 10
+HLPTN
Sbjct: 216 MHLPTN 221


>sp|ATGT_METM7|TRNA-GUANINE(15) transglycosylase|Methanococcus maripaludis (strain C7 /

Query: 5 LHLPTN 10
+HLPTN
Sbjct: 216 MHLPTN 221


>sp|ATGT_METMP|TRNA-GUANINE(15) transglycosylase|Methanococcus maripaludis (strain DSM 14266

Query: 5 LHLPTN 10
+HLPTN
Sbjct: 216 MHLPTN 221


>sp|ATGT_METM6|TRNA-GUANINE(15) transglycosylase|Methanococcus maripaludis (strain C6 /

Query: 5 LHLPTN 10
+HLPTN
Sbjct: 216 MHLPTN 221


>sp|NIFD_METBA|NITROGENASE molybdenum-iron protein alpha chain|Methanosarcina barkeri

Query: 3 MALHLPT 9
MALH PT
Sbjct: 512 MALHSPT 518


>sp|ATGT_METVS|TRNA-GUANINE(15) transglycosylase|Methanococcus vannielii (strain ATCC 35089

Query: 5 LHLPTN 10
+HLPTN
Sbjct: 216 MHLPTN 221


>sp|Y1038_PYRHO|PROBABLE ABC transporter permease protein|Pyrococcus horikoshii (strain

Query: 3 MALHLPT 9
+A+HLPT
Sbjct: 78 IAIHLPT 84




72|SequenceR|365|356|MEVNDKSMAL

>sp|YD5A_METJA|UNCHARACTERIZED protein MJ1351.1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MEVNDK 6
ME+NDK
Sbjct: 124 MEINDK 129


>sp|TOP6B_SULTO|TYPE 2 DNA topoisomerase 6|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 MEVNDKSM 8
+EVNDK +
Sbjct: 513 LEVNDKKL 520




73|SequenceR|370|361|ILAKIMEVND

>sp|RRP4_THEAC|EXOSOME complex component Rrp4|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 ILAKIMEVND 10
I AKIM VN+
Sbjct: 115 IYAKIMSVNE 124


>sp|Y1632_METJA|PUTATIVE glycyl-radical enzyme activating enzyme|Methanocaldococcus

Query: 1 ILAKIMEVND 10
IL KI+EVN+
Sbjct: 67 ILNKILEVNE 76


>sp|RRP4_THEVO|EXOSOME complex component Rrp4|Thermoplasma volcanium (strain ATCC 51530

Query: 1 ILAKIMEVND 10
+ AKIM VN+
Sbjct: 115 VYAKIMSVNE 124


>sp|Y952_ARCFU|UNCHARACTERIZED protein AF_0952|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ILAKIMEVN 9
++ K+ME+N
Sbjct: 134 VVKKVMEIN 142


>sp|RAD50_METJA|DNA double-strand break repair Rad50|Methanocaldococcus jannaschii

Query: 3 AKIMEVND 10
K+ME+ND
Sbjct: 208 KKLMEIND 215




74|SequenceR|375|366|EAGFVILAKI

>sp|Y919_METJA|UNCHARACTERIZED protein MJ0919|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EAGFVILAK 9
EAG++++AK
Sbjct: 65 EAGYIVIAK 73


>sp|HELS_METBU|ATP-DEPENDENT DNA helicase Hel308|Methanococcoides burtonii (strain DSM 6242

Query: 2 AGFVILAKI 10
AGFV +AK+
Sbjct: 694 AGFVSVAKL 702




75|SequenceR|380|371|NPTDVEAGFV

>sp|THYX_THEKO|FLAVIN-DEPENDENT thymidylate synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 NPTDVEAGFV 10
NP DVE FV
Sbjct: 100 NPEDVEETFV 109


>sp|THYX_PYRHO|FLAVIN-DEPENDENT thymidylate synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 NPTDVEAGFV 10
NP DVE FV
Sbjct: 97 NPEDVEETFV 106


>sp|THYX_THEON|FLAVIN-DEPENDENT thymidylate synthase|Thermococcus onnurineus (strain NA1)

Query: 1 NPTDVEAGFV 10
NP DVE FV
Sbjct: 100 NPRDVEETFV 109


>sp|NUCS_SACS2|ENDONUCLEASE NucS|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 NPTDVEAGFV 10
NP+ +E GFV
Sbjct: 136 NPSMIEEGFV 145


>sp|NUCS_SACI7|ENDONUCLEASE NucS|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 NPTDVEAGFV 10
NP+ +E GFV
Sbjct: 136 NPSMIEEGFV 145


>sp|NUCS_SACI4|ENDONUCLEASE NucS|Saccharolobus islandicus (strain M.14.25 /

Query: 1 NPTDVEAGFV 10
NP+ +E GFV
Sbjct: 136 NPSMIEEGFV 145


>sp|NUCS_SACI3|ENDONUCLEASE NucS|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 NPTDVEAGFV 10
NP+ +E GFV
Sbjct: 136 NPSMIEEGFV 145


>sp|NUCS_SACI2|ENDONUCLEASE NucS|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 NPTDVEAGFV 10
NP+ +E GFV
Sbjct: 136 NPSMIEEGFV 145


>sp|NUCS_SACI1|ENDONUCLEASE NucS|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 NPTDVEAGFV 10
NP+ +E GFV
Sbjct: 136 NPSMIEEGFV 145


>sp|Y798_METJA|TPR repeat-containing protein MJ0798|Methanocaldococcus jannaschii

Query: 1 NPTDVEA 7
NP DVEA
Sbjct: 199 NPNDVEA 205


>sp|HEM1_METKA|GLUTAMYL-TRNA reductase|Methanopyrus kandleri (strain AV19 /

Query: 1 NPTDVEAG 8
NP DVE G
Sbjct: 267 NPRDVEEG 274


>sp|Y263_METJA|TPR repeat-containing protein MJ0263|Methanocaldococcus jannaschii

Query: 2 PTDVEAGF 9
P DVEA F
Sbjct: 247 PNDVEAKF 254


>sp|RL40_HALSA|LARGE ribosomal subunit protein eL40|Halobacterium salinarum (strain

Query: 1 NPTDVEA 7
NPTD E+
Sbjct: 22 NPTDAES 28


>sp|RL40_HALS3|LARGE ribosomal subunit protein eL40|Halobacterium salinarum (strain

Query: 1 NPTDVEA 7
NPTD E+
Sbjct: 22 NPTDAES 28


>sp|RPIA_AERPE|RIBOSE-5-PHOSPHATE isomerase A|Aeropyrum pernix (strain ATCC 700893

Query: 2 PTDVEAGFV 10
P +VE GFV
Sbjct: 138 PVEVEPGFV 146


>sp|RS10_PYRNV|SMALL ribosomal subunit protein uS10|Pyrobaculum neutrophilum (strain

Query: 1 NPTDVE 6
NPTDV+
Sbjct: 17 NPTDVD 22


>sp|PUR2_METKA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 NPTDVEA 7
+PTDVEA
Sbjct: 52 DPTDVEA 58


>sp|Y260_METJA|UNCHARACTERIZED protein MJ0260|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 NPTDVEAG 8
NP DV+ G
Sbjct: 39 NPNDVDVG 46


>sp|SYI_METMJ|ISOLEUCINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 NPTDVEAG 8
NP ++EAG
Sbjct: 9 NPRELEAG 16


>sp|Y996_METJA|METALLOPROTEASE MJ0996|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 NPTDVE 6
NPTDV+
Sbjct: 111 NPTDVD 116


>sp|PYRD_NATPD|DIHYDROOROTATE dehydrogenase (quinone)|Natronomonas pharaonis (strain ATCC 35678

Query: 1 NPTDVEAGF 9
NP V AGF
Sbjct: 61 NPVGVAAGF 69




76|SequenceR|385|376|TEGFDNPTDV

>sp|H669_METJA|PROBABLE ATP-dependent RNA helicase MJ0669|Methanocaldococcus jannaschii

Query: 2 EGFDNPTDV 10
+GF+ PTD+
Sbjct: 24 KGFEKPTDI 32


>sp|KHSE_THEKO|HOMOSERINE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 EGFDNPTD 9
EG+D PTD
Sbjct: 43 EGYDVPTD 50


>sp|PYRDB_THEKO|DIHYDROOROTATE dehydrogenase B (NAD(+)), catalytic|Thermococcus kodakarensis

Query: 2 EGFDNPTDV 10
+G+DNPT V
Sbjct: 55 KGYDNPTIV 63


>sp|PYRDB_PYRHO|DIHYDROOROTATE dehydrogenase B (NAD(+)), catalytic|Pyrococcus horikoshii (strain

Query: 2 EGFDNPTDV 10
+G+DNPT V
Sbjct: 55 KGYDNPTIV 63


>sp|ISCS2_ARCFU|CYSTEINE desulfurase IscS 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 TEGFDNPTDV 10
TE F NP+ V
Sbjct: 25 TESFGNPSSV 34


>sp|PYRDB_PYRFU|DIHYDROOROTATE dehydrogenase B (NAD(+)), catalytic|Pyrococcus furiosus (strain

Query: 2 EGFDNPTDV 10
+G+DNPT V
Sbjct: 52 KGYDNPTVV 60


>sp|GCK_PYRHO|GLYCERATE 2-kinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 TEGFDNPTD 9
T+G D PTD
Sbjct: 367 TDGTDGPTD 375


>sp|SYH_AERPE|HISTIDINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 3 GFDNP 7
GFDNP
Sbjct: 178 GFDNP 182


>sp|PURP_SULTO|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Sulfurisphaera tokodaii (strain DSM

Query: 2 EGFDNPTDV 10
E F+NP D+
Sbjct: 119 EQFENPEDI 127


>sp|PYRDB_ARCFU|DIHYDROOROTATE dehydrogenase B (NAD(+)), catalytic|Archaeoglobus fulgidus

Query: 2 EGFDNPTDV 10
EG+ NPT V
Sbjct: 52 EGYRNPTVV 60


>sp|ISCS_METTE|CYSTEINE desulfurase IscS|Methanosarcina thermophila

Query: 1 TEGFDNPTDV 10
TE F NP+ +
Sbjct: 41 TENFGNPSSI 50


>sp|WTPA_METJA|MOLYBDATE/TUNGSTATE-BINDING protein WtpA|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GFDNPTD 9
GF NP D
Sbjct: 151 GFSNPND 157


>sp|PDXT_METTP|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Methanothrix thermoacetophila

Query: 2 EGFDNP 7
EGFD P
Sbjct: 123 EGFDRP 128


>sp|WTPA_ARCFU|MOLYBDATE/TUNGSTATE-BINDING protein WtpA|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 GFDNPTD 9
GF NP D
Sbjct: 146 GFSNPND 152


>sp|ARLY_METAR|ARGININOSUCCINATE lyase|Methanocella arvoryzae (strain DSM 22066

Query: 3 GFDNPTD 9
GFD P D
Sbjct: 220 GFDRPMD 226


>sp|ARLY_PYRCJ|ARGININOSUCCINATE lyase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 TEGFDNPTDV 10
TEG NP +V
Sbjct: 404 TEGSANPEEV 413


>sp|PYRDB_PYRAB|DIHYDROOROTATE dehydrogenase B (NAD(+)), catalytic|Pyrococcus abyssi (strain GE5

Query: 2 EGFDNPTDV 10
+G++NPT V
Sbjct: 51 KGYENPTIV 59


>sp|Y816_METJA|UNCHARACTERIZED protein MJ0816|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EGFDNPTD 9
+GF PTD
Sbjct: 280 KGFKEPTD 287


>sp|MES_EURX9|METALLOPTERIN-DEPENDENT ergothioneine synthase|Euryarchaeota archaeon (strain ADurb.Bin009)

Query: 3 GFDNPT 8
GFD PT
Sbjct: 552 GFDTPT 557


>sp|PURP_METS5|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Metallosphaera sedula (strain ATCC

Query: 4 FDNPTDV 10
F+NP DV
Sbjct: 120 FENPEDV 126


>sp|Y280_METAC|UNCHARACTERIZED solute-binding protein MA_0280|Methanosarcina acetivorans (strain

Query: 3 GFDNPTD 9
GF NP D
Sbjct: 154 GFSNPND 160




77|SequenceR|390|381|ALFTPTEGFD

>sp|WECBH_METMP|UDP-N-ACETYLGLUCOSAMINE 2-epimerase homolog|Methanococcus maripaludis (strain DSM 14266

Query: 2 LFTPTEGFD 10
LFTPTE D
Sbjct: 142 LFTPTETAD 150


>sp|RL18_METS5|LARGE ribosomal subunit protein uL18|Metallosphaera sedula (strain ATCC

Query: 1 ALFTPTEG 8
LFTPT+G
Sbjct: 106 GLFTPTKG 113


>sp|TIAS_THESM|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Thermococcus sibiricus (strain

Query: 1 ALFTPTEGF 9
A F PT+GF
Sbjct: 300 AAFEPTKGF 308


>sp|SAT_AERPE|SULFATE adenylyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 1 ALFTPTEGF 9
+F+P EGF
Sbjct: 49 GVFSPLEGF 57


>sp|SAT_CENSY|SULFATE adenylyltransferase|Cenarchaeum symbiosum (strain A)

Query: 1 ALFTPTEGF 9
+F+P EGF
Sbjct: 44 GIFSPLEGF 52


>sp|SAT_STAMF|SULFATE adenylyltransferase|Staphylothermus marinus (strain ATCC 43588

Query: 3 FTPTEGF 9
F+P EGF
Sbjct: 51 FSPLEGF 57


>sp|SAT_NITMS|SULFATE adenylyltransferase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 ALFTPTEGF 9
+F+P EGF
Sbjct: 45 GIFSPLEGF 53


>sp|PYCB_METJA|PYRUVATE carboxylase subunit B|Methanocaldococcus jannaschii (strain ATCC

Query: 1 ALFTPTEGFD 10
L TP EG++
Sbjct: 176 GLLTPYEGYE 185


>sp|DNAG_PYRNV|DNA primase DnaG|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 ALFTPTEGF 9
ALF+ TEG
Sbjct: 30 ALFSQTEGL 38


>sp|DNAG_PYRIL|DNA primase DnaG|Pyrobaculum islandicum (strain DSM 4184

Query: 1 ALFTPTEGF 9
ALF+ TEG
Sbjct: 30 ALFSQTEGL 38


>sp|DNAG_PYRCJ|DNA primase DnaG|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 ALFTPTEGF 9
ALF+ TEG
Sbjct: 30 ALFSQTEGL 38


>sp|DNAG_PYRAR|DNA primase DnaG|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 ALFTPTEGF 9
ALF+ TEG
Sbjct: 30 ALFSQTEGL 38


>sp|DNAG_PYRAE|DNA primase DnaG|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 ALFTPTEGF 9
ALF+ TEG
Sbjct: 30 ALFSQTEGL 38


>sp|DNAG_CALMQ|DNA primase DnaG|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 ALFTPTEGF 9
ALF+ TEG
Sbjct: 30 ALFSQTEGL 38


>sp|Y1067_METMP|UNCHARACTERIZED iron-sulfur protein MMP1067|Methanococcus maripaludis (strain DSM

Query: 2 LFTPTEGFD 10
+ P EGFD
Sbjct: 75 IIEPLEGFD 83


>sp|PGK_PYRWO|PHOSPHOGLYCERATE kinase|Pyrococcus woesei

Query: 2 LFTPTEGFD 10
LFT +GFD
Sbjct: 229 LFTLAKGFD 237


>sp|PGK_PYRFU|PHOSPHOGLYCERATE kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LFTPTEGFD 10
LFT +GFD
Sbjct: 229 LFTLAKGFD 237


>sp|PYRC_METTH|DIHYDROOROTASE thermautotrophicus (strain ATCC 29096

Query: 1 ALFTPTEGF 9
A +TP EGF
Sbjct: 382 AHYTPFEGF 390


>sp|SECD_HALVD|PROTEIN-EXPORT membrane protein SecD|Haloferax volcanii (strain ATCC 29605

Query: 1 ALFTPTEG 8
ALF+PT G
Sbjct: 23 ALFSPTMG 30


>sp|PYRC_ARCFU|DIHYDROOROTASE fulgidus (strain ATCC 49558

Query: 3 FTPTEGFD 10
+TP EGF+
Sbjct: 367 WTPFEGFE 374


>sp|VHTA_METMA|F420 non-reducing hydrogenase II large|Methanosarcina mazei (strain ATCC

Query: 3 FTPTEGFD 10
+ PT+G+D
Sbjct: 318 YKPTDGYD 325


>sp|VHOA_METMA|F420 non-reducing hydrogenase I large|Methanosarcina mazei (strain ATCC

Query: 3 FTPTEGFD 10
+ PT+G+D
Sbjct: 318 YKPTDGYD 325




78|SequenceR|395|386|RGIKSALFTP

>sp|KHSE_HALSA|HOMOSERINE kinase|Halobacterium salinarum (strain ATCC 700922

Query: 1 RGIKSALFTP 10
RG++ AL TP
Sbjct: 209 RGVEDALVTP 218


>sp|KHSE_HALS3|HOMOSERINE kinase|Halobacterium salinarum (strain ATCC 29341

Query: 1 RGIKSALFTP 10
RG++ AL TP
Sbjct: 209 RGVEDALVTP 218


>sp|IDI2_ARCFU|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 RGIKSALF 8
RG+K+A+F
Sbjct: 309 RGLKTAMF 316


>sp|HDRD_METMA|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina mazei (strain

Query: 2 GIKSALFTP 10
GIK+ LF P
Sbjct: 64 GIKAKLFGP 72


>sp|TRPA_SULAC|TRYPTOPHAN synthase alpha chain|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 GIKSALFT 9
GIK+ LFT
Sbjct: 132 GIKTVLFT 139


>sp|PURP_SULTO|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Sulfurisphaera tokodaii (strain DSM

Query: 2 GIKSALFTP 10
G K+AL TP
Sbjct: 22 GFKTALVTP 30


>sp|TRPA_SULTO|TRYPTOPHAN synthase alpha chain|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 RGIKSALFT 9
+G+K+ LFT
Sbjct: 130 KGVKAVLFT 138


>sp|Y1491_METJA|UNCHARACTERIZED protein MJ1491|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GIKSALFT 9
G+K+A+FT
Sbjct: 88 GLKAAMFT 95


>sp|SYE_PYRHO|GLUTAMATE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 RGIKSALFTP 10
RG++ FTP
Sbjct: 441 RGVRRLKFTP 450




79|SequenceR|400|391|KRTVLRGIKS

>sp|AATC_HALWD|A-TYPE ATP synthase subunit C|Haloquadratum walsbyi (strain DSM 16790

Query: 2 RTVLRGIKS 10
+TV+RGI S
Sbjct: 105 KTVIRGIYS 113


>sp|SYL1_METS5|LEUCINE--TRNA ligase 1|Metallosphaera sedula (strain ATCC 51363

Query: 2 RTVLRGIK 9
R VLRG+K
Sbjct: 837 RAVLRGLK 844


>sp|FLAK_METJA|PREFLAGELLIN peptidase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 RTVLRGIK 9
R V+RG+K
Sbjct: 135 RNVIRGVK 142


>sp|RS19_METM7|SMALL ribosomal subunit protein uS19|Methanococcus maripaludis (strain

Query: 1 KRTVLRGI 8
+RT+LRGI
Sbjct: 58 RRTMLRGI 65


>sp|RS19_METM6|SMALL ribosomal subunit protein uS19|Methanococcus maripaludis (strain

Query: 1 KRTVLRGI 8
+RT+LRGI
Sbjct: 58 RRTMLRGI 65


>sp|GUAAA_SULAC|GMP synthase [glutamine-hydrolyzing] subunit A|Sulfolobus

Query: 3 TVLRGIK 9
T+LRG+K
Sbjct: 113 TILRGLK 119




80|SequenceR|405|396|LTLIAKRTVL

***** No hits found ******


81|SequenceR|410|401|GVTRLLTLIA

>sp|CAS3_HALVD|CRISPR-ASSOCIATED nuclease/helicase Cas3|Haloferax volcanii (strain ATCC 29605

Query: 1 GVTRLLTLI 9
G+TRL+ L+
Sbjct: 456 GITRLIELL 464




82|SequenceR|415|406|FCYEAGVTRL

>sp|Y908_METJA|UNCHARACTERIZED protein MJ0908|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CYEAGVTRL 10
CY AGV+ L
Sbjct: 1003 CYGAGVSHL 1011


>sp|HIS7_METKA|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Methanopyrus kandleri (strain AV19 /

Query: 1 FCYEAGVT 8
FC AGVT
Sbjct: 147 FCDHAGVT 154


>sp|SUCC_HALMA|SUCCINATE--COA ligase [ADP-forming] subunit beta|Haloarcula marismortui (strain

Query: 3 YEAGVTR 9
YEAGV R
Sbjct: 157 YEAGVDR 163


>sp|AROA_METKA|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 2 CYEAGVTRL 10
C+ GVTR+
Sbjct: 321 CFAEGVTRI 329




83|SequenceR|420|411|GHIPPFCYEA

>sp|RL7A_PYRHO|LARGE ribosomal subunit protein eL8|Pyrococcus horikoshii (strain ATCC

Query: 1 GHIPPFCYE 9
H+PP C E
Sbjct: 64 AHLPPLCEE 72


>sp|RL7A_PYRAB|LARGE ribosomal subunit protein eL8|Pyrococcus abyssi (strain GE5 /

Query: 1 GHIPPFCYE 9
H+PP C E
Sbjct: 64 AHLPPLCEE 72


>sp|RL7A_PYRFU|LARGE ribosomal subunit protein eL8|Pyrococcus furiosus (strain ATCC

Query: 1 GHIPPFCYE 9
H+PP C E
Sbjct: 64 AHLPPLCEE 72


>sp|RL7A_THEGJ|LARGE ribosomal subunit protein eL8|Thermococcus gammatolerans (strain

Query: 1 GHIPPFCYE 9
H+PP C E
Sbjct: 64 AHLPPLCEE 72


>sp|RL7A_METTP|LARGE ribosomal subunit protein eL8|Methanothrix thermoacetophila

Query: 1 GHIPPFCYE 9
H+PP C E
Sbjct: 64 AHLPPLCEE 72


>sp|RL7A_THEKO|LARGE ribosomal subunit protein eL8|Thermococcus kodakarensis (strain

Query: 1 GHIPPFCYE 9
H+PP C E
Sbjct: 64 AHLPPLCEE 72


>sp|RL7A_METS5|LARGE ribosomal subunit protein eL8|Metallosphaera sedula (strain ATCC

Query: 1 GHIPPFCYE 9
H+PP C E
Sbjct: 64 AHLPPLCEE 72


>sp|RL7A_THEON|LARGE ribosomal subunit protein eL8|Thermococcus onnurineus (strain

Query: 1 GHIPPFCYE 9
H+PP C E
Sbjct: 64 AHLPPLCEE 72


>sp|PURP_SULTO|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Sulfurisphaera tokodaii (strain DSM

Query: 1 GHIPPFCYEA 10
G I PFC E+
Sbjct: 261 GMIGPFCLES 270


>sp|PURP_SULAC|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Sulfolobus acidocaldarius (strain ATCC

Query: 1 GHIPPFCYEA 10
G I PFC E+
Sbjct: 261 GMIGPFCLES 270


>sp|PURP_SACS2|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Saccharolobus solfataricus (strain ATCC

Query: 1 GHIPPFCYEA 10
G I PFC E+
Sbjct: 265 GMIGPFCLES 274


>sp|PURP_METS5|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Metallosphaera sedula (strain ATCC

Query: 1 GHIPPFCYEA 10
G I PFC E+
Sbjct: 260 GAIGPFCLES 269


>sp|TRM56_STAMF|TRNA (cytidine(56)-2'-O)-methyltransferase|Staphylothermus marinus

Query: 3 IPPFCYE 9
+PPF YE
Sbjct: 114 VPPFFYE 120


>sp|RF1_ARCFU|PEPTIDE chain release factor subunit|Archaeoglobus fulgidus (strain ATCC

Query: 4 PPFCYE 9
PPFC E
Sbjct: 342 PPFCEE 347


>sp|FAU1_HALWD|PROBABLE ribonuclease FAU-1|Haloquadratum walsbyi (strain DSM 16790

Query: 1 GHIPP 5
GHIPP
Sbjct: 482 GHIPP 486


>sp|ILVD_METBU|DIHYDROXY-ACID dehydratase|Methanococcoides burtonii (strain DSM 6242

Query: 1 GHIPPFCYEA 10
GHI P YE
Sbjct: 479 GHISPEAYEG 488


>sp|GATA_AERPE|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Aeropyrum pernix (strain ATCC 700893

Query: 1 GHIPPF 6
G+IPPF
Sbjct: 97 GYIPPF 102


>sp|RPO1C_METJA|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanocaldococcus jannaschii (strain

Query: 2 HIPPFCYEA 10
HIP C EA
Sbjct: 198 HIPANCVEA 206


>sp|TRM56_HYPBU|TRNA (cytidine(56)-2'-O)-methyltransferase|Hyperthermus butylicus

Query: 3 IPPFCYE 9
+PPF YE
Sbjct: 124 VPPFFYE 130


>sp|ASD_METMA|PUTATIVE archaetidylserine decarboxylase proenzyme|Methanosarcina mazei

Query: 1 GHIPPFCYEA 10
G++P FC ++
Sbjct: 110 GYLPAFCKDS 119


>sp|ASD_METBF|PUTATIVE archaetidylserine decarboxylase proenzyme|Methanosarcina barkeri

Query: 1 GHIPPFCYEA 10
G++P FC ++
Sbjct: 109 GYLPAFCKDS 118


>sp|ASD_METAC|PUTATIVE archaetidylserine decarboxylase proenzyme|Methanosarcina

Query: 1 GHIPPFCYEA 10
G++P FC ++
Sbjct: 110 GYLPAFCKDS 119


>sp|PURP_METBU|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanococcoides burtonii (strain DSM

Query: 1 GHIPPFCYE 9
G I PFC E
Sbjct: 284 GMIGPFCLE 292


>sp|SYFB_METBU|PHENYLALANINE--TRNA ligase beta subunit|Methanococcoides burtonii (strain DSM 6242

Query: 4 PPFCYEA 10
PPF Y+A
Sbjct: 145 PPFKYQA 151


>sp|SYG_METKA|GLYCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 HIPPFCYE 9
+PP CYE
Sbjct: 408 EVPPECYE 415


>sp|SYFB_THESM|PHENYLALANINE--TRNA ligase beta subunit|Thermococcus sibiricus (strain DSM 12597

Query: 4 PPFCYEA 10
PPF Y+A
Sbjct: 152 PPFYYKA 158


>sp|GATA_METMA|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanosarcina mazei (strain ATCC

Query: 1 GHIPPF 6
G++PPF
Sbjct: 89 GYVPPF 94


>sp|GATA_METAC|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanosarcina acetivorans (strain

Query: 1 GHIPPF 6
G++PPF
Sbjct: 89 GYVPPF 94


>sp|PURP_KORCO|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 GHIPPFCYE 9
G I PFC E
Sbjct: 294 GLIGPFCME 302


>sp|SYK1_METAC|LYSINE--TRNA ligase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GHIPPF 6
GH PPF
Sbjct: 253 GHEPPF 258


>sp|KPTA_PYRAE|PROBABLE RNA 2'-phosphotransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 HIPPFC 7
H+PP C
Sbjct: 197 HVPPEC 202


>sp|DGGGP_THESM|DIGERANYLGERANYLGLYCERYL phosphate synthase|Thermococcus sibiricus (strain DSM 12597

Query: 1 GHIPP 5
GH+PP
Sbjct: 31 GHLPP 35


>sp|ILVD_META3|DIHYDROXY-ACID dehydratase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 HIPPFCYE 9
HIP YE
Sbjct: 273 HIPALAYE 280


>sp|ADEC_METMJ|ADENINE deaminase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 GHIPPFC 7
G++PP C
Sbjct: 311 GYLPPAC 317


>sp|Y1859_ARCFU|UNCHARACTERIZED protein AF_1859|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 HIPPF 6
H+PPF
Sbjct: 20 HLPPF 24


>sp|BIOA_METJA|ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE aminotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 PPFCY 8
PP+CY
Sbjct: 182 PPYCY 186




84|SequenceR|425|416|QEAPVGHIPP

>sp|YR33_THEPE|UNCHARACTERIZED 33.4 kDa protein in|Thermofilum pendens

Query: 2 EAPVGHIPP 10
E PVG PP
Sbjct: 5 ELPVGRFPP 13


>sp|PCKG_PYRFU|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Pyrococcus furiosus (strain ATCC 43587

Query: 2 EAPVGHIP 9
E P+G+IP
Sbjct: 534 ETPIGYIP 541


>sp|PCKG_THEVO|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Thermoplasma volcanium (strain ATCC 51530

Query: 2 EAPVGHIP 9
E P+G+IP
Sbjct: 522 ETPIGYIP 529


>sp|PCKG_PYRHO|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 EAPVGHIP 9
E P+G+IP
Sbjct: 529 ETPIGYIP 536


>sp|PCKG_THEKO|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 EAPVGHIP 9
E P+G+IP
Sbjct: 532 ETPIGYIP 539


>sp|PCKG_PYRAB|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Pyrococcus abyssi (strain GE5 /

Query: 2 EAPVGHIP 9
E P+G+IP
Sbjct: 529 ETPIGYIP 536


>sp|PCKG_THEAC|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 EAPVGHIP 9
E P+G+IP
Sbjct: 522 ETPIGYIP 529


>sp|RFCL_METLZ|REPLICATION factor C large subunit|Methanocorpusculum labreanum (strain ATCC

Query: 1 QEAPVGHIPP 10
QE PV PP
Sbjct: 441 QEPPVPETPP 450


>sp|SYM_METJA|METHIONINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EAPVGHI 8
EAP+G+I
Sbjct: 249 EAPIGYI 255


>sp|SYM_META3|METHIONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 EAPVGHI 8
EAP+G+I
Sbjct: 251 EAPIGYI 257


>sp|PCKG_THESM|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Thermococcus sibiricus (strain DSM 12597

Query: 2 EAPVGHIP 9
+ PVG+IP
Sbjct: 533 KTPVGYIP 540


>sp|SYM_THEON|METHIONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 2 EAPVGHI 8
EAP+G+I
Sbjct: 257 EAPIGYI 263


>sp|ARSA_HALSA|PUTATIVE arsenical pump-driving ATPase|Halobacterium salinarum (strain ATCC

Query: 2 EAPVGHIP 9
E PVGH P
Sbjct: 390 EQPVGHEP 397


>sp|SECY_HALSA|PROTEIN translocase subunit SecY|Halobacterium salinarum (strain ATCC

Query: 2 EAPVGHIP 9
E P GH+P
Sbjct: 18 ERPEGHVP 25


>sp|SYM_PYRFU|METHIONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 EAPVGHI 8
EAP+G+I
Sbjct: 256 EAPIGYI 262


>sp|SYS_PYRAE|SERINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 QEAPVGH 7
++APVGH
Sbjct: 150 EKAPVGH 156


>sp|SYM_PYRHO|METHIONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 EAPVGHI 8
EAP+G+I
Sbjct: 256 EAPIGYI 262


>sp|DGGGP_THESM|DIGERANYLGERANYLGLYCERYL phosphate synthase|Thermococcus sibiricus (strain DSM 12597

Query: 5 VGHIPP 10
+GH+PP
Sbjct: 30 LGHLPP 35


>sp|SYM_THEKO|METHIONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 EAPVGHI 8
EAP+G+I
Sbjct: 257 EAPIGYI 263


>sp|SYM_PYRAB|METHIONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 EAPVGHI 8
EAP+G+I
Sbjct: 256 EAPIGYI 262


>sp|SYM_METVS|METHIONINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 EAPVGHI 8
EAP+G++
Sbjct: 250 EAPIGYV 256


>sp|SYM_METMP|METHIONINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 EAPVGHI 8
EAP+G++
Sbjct: 250 EAPIGYV 256


>sp|SYM_METM7|METHIONINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 2 EAPVGHI 8
EAP+G++
Sbjct: 250 EAPIGYV 256


>sp|SYM_METM5|METHIONINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 2 EAPVGHI 8
EAP+G++
Sbjct: 250 EAPIGYV 256


>sp|TRPE_METTH|ANTHRANILATE synthase component 1|Methanothermobacter thermautotrophicus (strain

Query: 1 QEAPVGHI 8
+E P GH+
Sbjct: 168 EETPTGHL 175


>sp|SECY_HALMA|PROTEIN translocase subunit SecY|Haloarcula marismortui (strain ATCC

Query: 2 EAPVGHIP 9
+ P GH+P
Sbjct: 18 QRPEGHVP 25


>sp|FAU1_HALWD|PROBABLE ribonuclease FAU-1|Haloquadratum walsbyi (strain DSM 16790

Query: 6 GHIPP 10
GHIPP
Sbjct: 482 GHIPP 486




85|SequenceR|430|421|PAASGQEAPV

>sp|RL30_PYRNV|LARGE ribosomal subunit protein uL30|Pyrobaculum neutrophilum (strain DSM

Query: 1 PAASGQEAP 9
PA GQ AP
Sbjct: 121 PAREGQRAP 129


>sp|MUTL_METTP|DNA mismatch repair protein MutL|Methanothrix thermoacetophila (strain

Query: 1 PAASGQEAP 9
PAA+G E+P
Sbjct: 465 PAAAGLESP 473


>sp|RL1_HALWD|LARGE ribosomal subunit protein uL1|Haloquadratum walsbyi (strain DSM

Query: 1 PAASGQEAPV 10
PA +GQE +
Sbjct: 50 PAGTGQETQI 59


>sp|BACS_HALSD|SENSORY rhodopsin|Halorubrum sodomense

Query: 1 PAASGQEAP 9
P A+G +AP
Sbjct: 242 PVATGDDAP 250




86|SequenceR|435|426|SFPHHPAASG

>sp|NUOCD_HALVD|NADH-QUINONE oxidoreductase subunit C/D|Haloferax volcanii (strain ATCC 29605

Query: 3 PHHPAASG 10
PHHPA G
Sbjct: 192 PHHPATHG 199


>sp|RL15E_STAMF|LARGE ribosomal subunit protein eL15|Staphylothermus marinus (strain ATCC

Query: 3 PHHPA 7
PHHPA
Sbjct: 137 PHHPA 141


>sp|RADA_CENSY|DNA repair and recombination protein|Cenarchaeum symbiosum (strain A)

Query: 3 PHHPAA 8
PHHPA+
Sbjct: 302 PHHPAS 307


>sp|DLD_ARCFU|D-LACTATE dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SFPHHPAA 8
SFP HP A
Sbjct: 122 SFPPHPGA 129


>sp|SYC_METVS|CYSTEINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 SFPHH 5
SFPHH
Sbjct: 230 SFPHH 234


>sp|SYC_METMP|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 SFPHH 5
SFPHH
Sbjct: 230 SFPHH 234


>sp|SYC_METM7|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 SFPHH 5
SFPHH
Sbjct: 230 SFPHH 234


>sp|SYC_METM6|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 1 SFPHH 5
SFPHH
Sbjct: 230 SFPHH 234


>sp|FILI_METH6|METHANOGENESIS regulatory histidine kinase FilI|Methanothrix harundinacea (strain

Query: 1 SFPHHPAAS 9
S P+HP +S
Sbjct: 550 SLPYHPDSS 558


>sp|SYC_THEVO|CYSTEINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 FPHHPA 7
FPHH A
Sbjct: 230 FPHHEA 235


>sp|SYC_THEAC|CYSTEINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 FPHHPA 7
FPHH A
Sbjct: 230 FPHHEA 235


>sp|RL15E_METHJ|LARGE ribosomal subunit protein eL15|Methanospirillum hungatei JF-1

Query: 3 PHHPA 7
PHHP+
Sbjct: 137 PHHPS 141


>sp|RL15E_DESA1|LARGE ribosomal subunit protein eL15|Desulfurococcus amylolyticus (strain

Query: 3 PHHPA 7
PHHP+
Sbjct: 136 PHHPS 140


>sp|HACA_METJA|METHANOGEN homoaconitase large subunit|Methanocaldococcus jannaschii (strain

Query: 1 SFPHHP 6
+ PHHP
Sbjct: 275 AVPHHP 280


>sp|KHSE_SULTO|HOMOSERINE kinase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 FPHHP 6
FPH+P
Sbjct: 234 FPHYP 238


>sp|RL15E_METAC|LARGE ribosomal subunit protein eL15|Methanosarcina acetivorans (strain

Query: 3 PHHP 6
PHHP
Sbjct: 137 PHHP 140


>sp|RL15E_METMA|LARGE ribosomal subunit protein eL15|Methanosarcina mazei (strain ATCC

Query: 3 PHHP 6
PHHP
Sbjct: 137 PHHP 140


>sp|MTD_METJA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanocaldococcus

Query: 3 PHHP 6
PHHP
Sbjct: 259 PHHP 262


>sp|MTSA_METBA|METHYLATED-THIOL--COENZYME M methyltransferase|Methanosarcina barkeri

Query: 2 FPHHPAASG 10
FP P+ASG
Sbjct: 198 FPADPSASG 206


>sp|RL15E_METAR|LARGE ribosomal subunit protein eL15|Methanocella arvoryzae (strain DSM

Query: 3 PHHPA 7
PHHP+
Sbjct: 137 PHHPS 141


>sp|RL15E_PYRFU|LARGE ribosomal subunit protein eL15|Pyrococcus furiosus (strain ATCC

Query: 3 PHHP 6
PHHP
Sbjct: 135 PHHP 138


>sp|G3PP_PYRAB|GLYCERALDEHYDE 3-phosphate phosphatase|Pyrococcus abyssi (strain GE5 /

Query: 1 SFPHH 5
+FPHH
Sbjct: 57 NFPHH 61


>sp|RL15E_THEON|LARGE ribosomal subunit protein eL15|Thermococcus onnurineus (strain NA1)

Query: 3 PHHP 6
PHHP
Sbjct: 135 PHHP 138


>sp|RL15E_THEGJ|LARGE ribosomal subunit protein eL15|Thermococcus gammatolerans (strain

Query: 3 PHHP 6
PHHP
Sbjct: 135 PHHP 138


>sp|RL15E_PYRHO|LARGE ribosomal subunit protein eL15|Pyrococcus horikoshii (strain ATCC

Query: 3 PHHP 6
PHHP
Sbjct: 135 PHHP 138


>sp|RL10E_METMJ|LARGE ribosomal subunit protein uL16|Methanoculleus marisnigri (strain

Query: 1 SFPHH 5
+FPHH
Sbjct: 88 TFPHH 92


>sp|RL15E_PYRAB|LARGE ribosomal subunit protein eL15|Pyrococcus abyssi (strain GE5 /

Query: 3 PHHP 6
PHHP
Sbjct: 135 PHHP 138


>sp|LEUC_THEKO|3-ISOPROPYLMALATE dehydratase large subunit|Thermococcus kodakarensis (strain ATCC

Query: 3 PHHPA 7
PHHP+
Sbjct: 237 PHHPS 241


>sp|RL15E_THEKO|LARGE ribosomal subunit protein eL15|Thermococcus kodakarensis (strain

Query: 3 PHHP 6
PHHP
Sbjct: 135 PHHP 138


>sp|SAT_STAMF|SULFATE adenylyltransferase|Staphylothermus marinus (strain ATCC 43588

Query: 3 PHHP 6
PHHP
Sbjct: 161 PHHP 164


>sp|METXA_HALVD|HOMOSERINE O-acetyltransferase|Haloferax volcanii (strain ATCC 29605

Query: 1 SFPHHPAAS 9
+FP PAAS
Sbjct: 256 AFPSDPAAS 264




87|SequenceR|440|431|QARELSFPHH

>sp|SYC_METVS|CYSTEINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 ARELSFPHH 10
R+LSFPHH
Sbjct: 226 GRDLSFPHH 234


>sp|SYC_METMP|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 ARELSFPHH 10
R+LSFPHH
Sbjct: 226 GRDLSFPHH 234


>sp|SYC_METM6|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 2 ARELSFPHH 10
R+LSFPHH
Sbjct: 226 GRDLSFPHH 234


>sp|SYC_METM7|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 2 ARELSFPHH 10
R+LSFPHH
Sbjct: 226 GRDLSFPHH 234


>sp|SYC_IGNH4|CYSTEINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 ARELSFPHH 10
AR+L FPHH
Sbjct: 223 ARDLIFPHH 231


>sp|KHSE_SULTO|HOMOSERINE kinase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 QARELSFPHH 10
+ARE FPH+
Sbjct: 228 KAREPLFPHY 237


>sp|MTAP_THEKO|S-METHYL-5'-THIOADENOSINE phosphorylase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 ARELSFPHH 10
A+EL FP H
Sbjct: 141 AKELGFPVH 149




88|SequenceR|445|436|SIPPPQAREL

>sp|TRPD_SACI7|ANTHRANILATE phosphoribosyltransferase|Saccharolobus islandicus (strain

Query: 2 IPPPQAREL 10
+PP +A+EL
Sbjct: 131 VPPERAKEL 139


>sp|TRPD_SACI6|ANTHRANILATE phosphoribosyltransferase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 IPPPQAREL 10
+PP +A+EL
Sbjct: 131 VPPERAKEL 139


>sp|TRPD_SACI4|ANTHRANILATE phosphoribosyltransferase|Saccharolobus islandicus (strain M.14.25

Query: 2 IPPPQAREL 10
+PP +A+EL
Sbjct: 131 VPPERAKEL 139


>sp|TRPD_SACI3|ANTHRANILATE phosphoribosyltransferase|Saccharolobus islandicus (strain M.16.27)

Query: 2 IPPPQAREL 10
+PP +A+EL
Sbjct: 131 VPPERAKEL 139


>sp|TRPD_SACI2|ANTHRANILATE phosphoribosyltransferase|Saccharolobus islandicus (strain L.S.2.15

Query: 2 IPPPQAREL 10
+PP +A+EL
Sbjct: 131 VPPERAKEL 139


>sp|TRPD_SACI1|ANTHRANILATE phosphoribosyltransferase|Saccharolobus islandicus (strain

Query: 2 IPPPQAREL 10
+PP +A+EL
Sbjct: 131 VPPERAKEL 139


>sp|TRPD_SACS2|ANTHRANILATE phosphoribosyltransferase|Saccharolobus solfataricus (strain ATCC

Query: 2 IPPPQAREL 10
+PP +A+EL
Sbjct: 131 VPPERAKEL 139


>sp|Y384_ARCFU|UPF0252 protein AF_0384|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SIPPPQ 6
S+PPPQ
Sbjct: 88 SLPPPQ 93


>sp|TIAS_IGNAA|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Ignisphaera aggregans (strain

Query: 2 IPPPQA 7
IPPP+A
Sbjct: 422 IPPPRA 427


>sp|THIC_METKA|PHOSPHOMETHYLPYRIMIDINE synthase|Methanopyrus kandleri (strain AV19 /

Query: 4 PPQAREL 10
PPQA+EL
Sbjct: 402 PPQAKEL 408


>sp|IF2P_METM6|PROBABLE translation initiation factor IF-2|Methanococcus maripaludis

Query: 2 IPPPQAREL 10
+P P+AR+L
Sbjct: 556 VPEPEARKL 564


>sp|IF2P_METM5|PROBABLE translation initiation factor IF-2|Methanococcus maripaludis

Query: 2 IPPPQAREL 10
+P P+AR+L
Sbjct: 556 VPEPEARKL 564


>sp|IF2P_METMP|PROBABLE translation initiation factor IF-2|Methanococcus maripaludis

Query: 2 IPPPQAREL 10
+P P+AR+L
Sbjct: 556 VPEPEARKL 564


>sp|IF2P_METM7|PROBABLE translation initiation factor IF-2|Methanococcus maripaludis

Query: 2 IPPPQAREL 10
+P P+AR+L
Sbjct: 556 VPEPEARKL 564


>sp|HIS1_THEON|ATP phosphoribosyltransferase|Thermococcus onnurineus (strain NA1)

Query: 2 IPPPQAREL 10
+ PP+ REL
Sbjct: 25 LKPPETREL 33


>sp|SYA_METKA|ALANINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 IPPPQAREL 10
IPP ARE+
Sbjct: 450 IPPEVAREI 458


>sp|SYL_NANEQ|LEUCINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 4 PPQAREL 10
PPQ +EL
Sbjct: 542 PPQVKEL 548


>sp|HTAXP_HALS3|HEAT repeat-containing taxis protein OE_2401F|Halobacterium salinarum

Query: 1 SIPPPQAREL 10
++PP Q+ EL
Sbjct: 249 NVPPDQSHEL 258


>sp|NOB1_METJA|ENDORIBONUCLEASE Nob1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SIPPPQAREL 10
S+PPP+ +L
Sbjct: 3 SLPPPEFYKL 12




89|SequenceR|450|441|ELNNLSIPPP

>sp|LPLAN_THEAC|LIPOATE-PROTEIN ligase A subunit 1|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 ELNNLSIP 8
ELN++SIP
Sbjct: 125 ELNDVSIP 132


>sp|CARB_SACI7|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 3 NNLSIPP 9
NNL +PP
Sbjct: 137 NNLPVPP 143


>sp|CARB_SACI2|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 3 NNLSIPP 9
NNL +PP
Sbjct: 137 NNLPVPP 143


>sp|CARB_SACI6|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 3 NNLSIPP 9
NNL +PP
Sbjct: 137 NNLPVPP 143


>sp|CARB_SACI4|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 3 NNLSIPP 9
NNL +PP
Sbjct: 137 NNLPVPP 143


>sp|CARB_SACI3|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 3 NNLSIPP 9
NNL +PP
Sbjct: 137 NNLPVPP 143


>sp|CARB_SACI1|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 3 NNLSIPP 9
NNL +PP
Sbjct: 137 NNLPVPP 143


>sp|CARB_SACS2|CARBAMOYL phosphate synthase large chain|Saccharolobus solfataricus (strain

Query: 3 NNLSIPP 9
NNL +PP
Sbjct: 137 NNLPVPP 143


>sp|SYK_METKA|LYSINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 ELNNLSIPP 9
E+N IPP
Sbjct: 229 EVNGFEIPP 237


>sp|YPZ2_METTF|UNCHARACTERIZED protein ORF2'|Methanothermobacter thermautotrophicus

Query: 1 ELNNLSIPP 9
EL+NL PP
Sbjct: 81 ELSNLGNPP 89


>sp|HIS4_METST|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanosphaera stadtmanae (strain

Query: 2 LNNLSIP 8
LNN+SIP
Sbjct: 186 LNNVSIP 192


>sp|CARB_METHJ|CARBAMOYL phosphate synthase large chain|Methanospirillum hungatei JF-1

Query: 2 LNNLSIPPP 10
L++LSIP P
Sbjct: 666 LDSLSIPTP 674


>sp|Y865_METJA|PUTATIVE methylthiotransferase MJ0865|Methanocaldococcus jannaschii (strain

Query: 3 NNLSIP 8
NNLS+P
Sbjct: 252 NNLSVP 257


>sp|EF1A_METBU|ELONGATION factor 1-alpha|Methanococcoides burtonii (strain DSM 6242

Query: 2 LNNLSIP 8
LNNL++P
Sbjct: 210 LNNLTVP 216


>sp|PCNA1_SULAC|DNA polymerase sliding clamp 1|Sulfolobus acidocaldarius (strain ATCC

Query: 2 LNNLSIPPP 10
+NN+ + PP
Sbjct: 111 INNIQVSPP 119


>sp|ASSY_THEVO|ARGININOSUCCINATE synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 ELNNLSIPPP 10
E+ N+S+P P
Sbjct: 183 EIENMSLPVP 192




90|SequenceR|455|446|MLDQLELNNL

>sp|ACDA2_METMA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina mazei

Query: 1 MLDQLELNNL 10
M+D +E NNL
Sbjct: 258 MMDYMEENNL 267


>sp|QOXM_SULAC|QUINOL oxidase subunit 1/3|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 DQLELNNL 10
DQL NNL
Sbjct: 43 DQLSFNNL 50


>sp|PURP_METM5|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanococcus maripaludis (strain C5 /

Query: 3 DQLELN 8
DQLELN
Sbjct: 243 DQLELN 248


>sp|PUR2_METAR|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 MLDQLELNNL 10
+ D+LELN +
Sbjct: 81 LADELELNGI 90




91|SequenceR|460|451|ARSIHMLDQL

>sp|KAE1_NANEQ|TRNA N6-adenosine threonylcarbamoyltransferase|Nanoarchaeum equitans

Query: 2 RSIHMLDQ 9
R++HMLD+
Sbjct: 236 RAMHMLDK 243


>sp|SYI_METTH|ISOLEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 SIHMLD 8
SIHMLD
Sbjct: 780 SIHMLD 785


>sp|SYI_AERPE|ISOLEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 3 SIHMLD 8
SIHMLD
Sbjct: 793 SIHMLD 798


>sp|SYI_METTM|ISOLEUCINE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 3 SIHMLDQL 10
SIHMLD +
Sbjct: 780 SIHMLDWM 787


>sp|RLME_HALMA|RIBOSOMAL RNA large subunit methyltransferase|Haloarcula marismortui (strain

Query: 1 ARSIHMLDQ 9
ARS+H++ Q
Sbjct: 132 ARSVHLVRQ 140


>sp|TIAS_METJA|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Methanocaldococcus jannaschii

Query: 3 SIHMLDQL 10
+IH+LD+L
Sbjct: 60 AIHILDEL 67


>sp|SYI_THEKO|ISOLEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 SIHMLD 8
S+HMLD
Sbjct: 812 SVHMLD 817


>sp|SYI_PYRHO|ISOLEUCINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 SIHMLD 8
S+HMLD
Sbjct: 812 SVHMLD 817


>sp|SYI_PYRFU|ISOLEUCINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 SIHMLD 8
S+HMLD
Sbjct: 812 SVHMLD 817


>sp|SYI_PYRAB|ISOLEUCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 3 SIHMLD 8
S+HMLD
Sbjct: 812 SVHMLD 817


>sp|SYI_METMJ|ISOLEUCINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 SIHMLD 8
S+HMLD
Sbjct: 787 SVHMLD 792


>sp|SYI_METB6|ISOLEUCINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 3 SIHMLD 8
S+HMLD
Sbjct: 786 SVHMLD 791


>sp|DADD_METMA|5'-DEOXYADENOSINE deaminase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 SIHMLDQL 10
S+HMLD +
Sbjct: 230 SVHMLDDI 237


>sp|ENGB_METMP|PROBABLE GTP-binding protein EngB|Methanococcus maripaludis (strain DSM

Query: 1 ARSIHMLD 8
A SIH+LD
Sbjct: 120 AASIHILD 127


>sp|PCNA_METTH|DNA polymerase sliding clamp|Methanothermobacter thermautotrophicus

Query: 1 ARSIHMLDQL 10
ARSI+ LD++
Sbjct: 187 ARSIYSLDKI 196


>sp|Y1419_METJA|UPF0147 protein MJ1419|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ARSIHMLDQL 10
A +IH+LD++
Sbjct: 59 ATAIHILDEI 68




92|SequenceR|465|456|FAPKRARSIH

>sp|TRUA_PYRNV|TRNA pseudouridine synthase A|Pyrobaculum neutrophilum (strain DSM

Query: 1 FAPKRARSIH 10
F P+RARS H
Sbjct: 84 FNPRRARSRH 93


>sp|Y2181_ARCFU|UNCHARACTERIZED protein AF_2181|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 FAPKRARSIH 10
+A KRA+++H
Sbjct: 49 WAKKRAKALH 58


>sp|RS19_METBF|SMALL ribosomal subunit protein uS19|Methanosarcina barkeri (strain

Query: 1 FAPKRARSIH 10
FAP R+R H
Sbjct: 110 FAPTRSRVSH 119


>sp|RS19_METAC|SMALL ribosomal subunit protein uS19|Methanosarcina acetivorans (strain

Query: 1 FAPKRARSIH 10
FAP R+R H
Sbjct: 110 FAPTRSRVSH 119


>sp|RS19_METMA|SMALL ribosomal subunit protein uS19|Methanosarcina mazei (strain ATCC

Query: 1 FAPKRARSIH 10
FAP R+R H
Sbjct: 110 FAPTRSRVNH 119




93|SequenceR|470|461|MSGLIFAPKR

>sp|RGYRB_METKA|REVERSE gyrase subunit B|Methanopyrus kandleri (strain AV19 /

Query: 3 GLIFAPKR 10
GLIF P+R
Sbjct: 437 GLIFVPQR 444


>sp|MCAL_HALMA|L-MALYL-COA/BETA-METHYLMALYL-COA lyase|Haloarcula marismortui (strain ATCC 43049

Query: 1 MSGLIFAP 8
+SGL+F P
Sbjct: 168 LSGLVFGP 175


>sp|PYRI_HALWD|ASPARTATE carbamoyltransferase regulatory chain|Haloquadratum walsbyi (strain

Query: 1 MSGLIFAPKR 10
++GL+F P R
Sbjct: 127 VTGLLFCPNR 136


>sp|SERK_DESA1|ATP-DEPENDENT L-serine kinase|Desulfurococcus amylolyticus (strain DSM 18924

Query: 3 GLIFAPK 9
GL++APK
Sbjct: 228 GLVYAPK 234




94|SequenceR|475|466|RKEDRMSGLI

>sp|THI4_PYRFU|THIAMINE thiazole synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 KEDRMSGLI 10
K+DR+SG++
Sbjct: 132 KDDRVSGIV 140


>sp|THI4_METVS|THIAMINE thiazole synthase|Methanococcus vannielii (strain ATCC 35089

Query: 2 KEDRMSGLI 10
KED++SG++
Sbjct: 139 KEDKISGVV 147


>sp|THI4_METMP|THIAMINE thiazole synthase|Methanococcus maripaludis (strain DSM 14266

Query: 2 KEDRMSGLI 10
KED++SG++
Sbjct: 139 KEDKVSGVV 147


>sp|Y1570_METJA|UNCHARACTERIZED protein MJ1570|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 EDRMSGLI 10
ED++SGL+
Sbjct: 50 EDKVSGLL 57


>sp|THI4_METBF|THIAMINE thiazole synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 RKEDRMSGLI 10
R+ DR++G++
Sbjct: 133 RENDRVTGIV 142


>sp|THI4_HALVD|THIAMINE thiazole synthase|Haloferax volcanii (strain ATCC 29605

Query: 1 RKEDRMSGLI 10
R++DR+ G++
Sbjct: 141 REDDRVGGIV 150


>sp|Y773_METJA|UNCHARACTERIZED protein MJ0773|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KEDRMSGLI 10
KED++ G++
Sbjct: 118 KEDKLGGIV 126


>sp|THI4_METMA|THIAMINE thiazole synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 RKEDRMSGLI 10
R+ DR++G++
Sbjct: 133 RENDRVTGIV 142


>sp|THI4_METAC|THIAMINE thiazole synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 RKEDRMSGLI 10
R+ DR++G++
Sbjct: 133 RENDRVTGIV 142


>sp|DNPH1_METAC|PUTATIVE 2'-deoxynucleoside 5'-phosphate N-hydrolase 1|Methanosarcina

Query: 1 RKEDRMSGL 9
+KEDR+ G+
Sbjct: 9 KKEDRIMGI 17




95|SequenceR|480|471|LHDHTRKEDR

>sp|METE_SACS2|METHIONINE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 HTRKED 9
HTRKED
Sbjct: 184 HTRKED 189


>sp|Y963_METKA|MEMO1 family protein MK0963|Methanopyrus kandleri (strain AV19 /

Query: 2 HDHTRKEDR 10
HD +K+DR
Sbjct: 200 HDQAQKKDR 208


>sp|NUCS_SULTO|ENDONUCLEASE NucS|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LHDHTRKE 8
+H+HT++E
Sbjct: 61 VHEHTKRE 68


>sp|AATB_PICTO|A-TYPE ATP synthase subunit B|Picrophilus torridus (strain ATCC 700027

Query: 3 DHTRKEDR 10
DHTR++ R
Sbjct: 360 DHTREDHR 367


>sp|CHED_METHJ|PROBABLE chemoreceptor glutamine deamidase CheD|Methanospirillum hungatei

Query: 1 LHDHTRK 7
+HD TRK
Sbjct: 41 IHDETRK 47


>sp|METE_SULAC|METHIONINE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 HTRKED 9
HTRKED
Sbjct: 185 HTRKED 190


>sp|METE_SACI1|METHIONINE synthase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 4 HTRKED 9
HTR+ED
Sbjct: 184 HTRRED 189


>sp|METE_SACI7|METHIONINE synthase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 4 HTRKED 9
HTR+ED
Sbjct: 184 HTRRED 189


>sp|METE_SACI6|METHIONINE synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 4 HTRKED 9
HTR+ED
Sbjct: 184 HTRRED 189


>sp|METE_SACI4|METHIONINE synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 4 HTRKED 9
HTR+ED
Sbjct: 184 HTRRED 189


>sp|METE_SACI3|METHIONINE synthase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 4 HTRKED 9
HTR+ED
Sbjct: 184 HTRRED 189


>sp|METE_SACI2|METHIONINE synthase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 4 HTRKED 9
HTR+ED
Sbjct: 184 HTRRED 189


>sp|RNZ_HALMA|RIBONUCLEASE Z|Haloarcula marismortui (strain ATCC 43049

Query: 1 LHDHTRKEDR 10
+HD T EDR
Sbjct: 228 VHDATFAEDR 237




96|SequenceR|485|476|GDLCLLHDHT

>sp|Y1105_METKA|PUTATIVE nickel insertion protein|Methanopyrus kandleri (strain AV19 /

Query: 1 GDLCLLHD 8
GDLC LH+
Sbjct: 112 GDLCHLHE 119


>sp|Y1518_METJA|UNCHARACTERIZED protein MJ1518|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 LCLLHDHT 10
+CLL+D+T
Sbjct: 251 MCLLYDYT 258


>sp|SFSA_SULAC|SUGAR fermentation stimulation protein homolog|Sulfolobus

Query: 1 GDLCLLHD 8
G LC LHD
Sbjct: 34 GKLCHLHD 41


>sp|DPCKG_METAR|GTP-DEPENDENT dephospho-CoA kinase|Methanocella arvoryzae (strain DSM 22066

Query: 2 DLCLLHDHT 10
D+CL+ D T
Sbjct: 61 DMCLVDDQT 69


>sp|MEND_HALLT|2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE synthase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 GDLCLLHD 8
GDL L HD
Sbjct: 483 GDLALYHD 490


>sp|CAS1B_METHJ|PUTATIVE CRISPR-associated endonuclease Cas1 2|Methanospirillum hungatei

Query: 2 DLCLLHD 8
D C+LHD
Sbjct: 256 DRCILHD 262


>sp|PURL_METTP|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanothrix thermoacetophila (strain DSM

Query: 1 GDLCLLHDH 9
++C+L DH
Sbjct: 671 AEMCMLSDH 679


>sp|TPSP_THETK|BIFUNCTIONAL trehalose-6-phosphate synthase/phosphatase|Thermoproteus tenax

Query: 1 GDLCLLHDH 9
GDL +HD+
Sbjct: 136 GDLVWIHDY 144


>sp|NUCS_METTH|ENDONUCLEASE NucS|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 GDLCLLHDH 9
GD+ ++H H
Sbjct: 137 GDMIIMHPH 145


>sp|CPGS_THEGJ|CYCLIC 2,3-diphosphoglycerate synthetase|Thermococcus gammatolerans

Query: 3 LCLLHDHT 10
LCLLH T
Sbjct: 94 LCLLHGVT 101


>sp|DPCKG_METMA|GTP-DEPENDENT dephospho-CoA kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 DLCLLHDHT 10
D+C++ D T
Sbjct: 63 DICIVDDRT 71


>sp|QUEC_METLZ|7-CYANO-7-DEAZAGUANINE synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 DLCLLHDHT 10
+LC+ ++HT
Sbjct: 177 ELCVPYEHT 185




97|SequenceR|490|481|GKVGGGDLCL

>sp|AROA_NITMS|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 GKVGGGDLCL 10
GK+ GGD+ +
Sbjct: 147 GKISGGDVTI 156


>sp|GATE_METJA|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanocaldococcus jannaschii (strain

Query: 1 GKVGGGDLCL 10
GKVG LCL
Sbjct: 149 GKVGITSLCL 158


>sp|Y1526_METJA|UPF0280 protein MJ1526|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 GGDLCL 10
GGD+CL
Sbjct: 105 GGDICL 110


>sp|AATE_METTH|A-TYPE ATP synthase subunit E|Methanothermobacter thermautotrophicus

Query: 2 KVGGGDL 8
++GGGDL
Sbjct: 120 EIGGGDL 126


>sp|RFRNP_METKA|RNA-FREE ribonuclease P|Methanopyrus kandleri (strain AV19 /

Query: 2 KVGGGDLC 9
++G GDLC
Sbjct: 23 ELGDGDLC 30


>sp|RL3_SULTO|LARGE ribosomal subunit protein uL3|Sulfurisphaera tokodaii (strain DSM

Query: 2 KVGGGDL 8
+VGGGD+
Sbjct: 174 QVGGGDI 180


>sp|Y1437_METM6|UPF0280 protein MmarC6_1437|Methanococcus maripaludis (strain C6 /

Query: 5 GGDLCL 10
GGD+CL
Sbjct: 109 GGDICL 114


>sp|Y1236_METMP|UPF0280 protein MMP1236|Methanococcus maripaludis (strain DSM 14266

Query: 5 GGDLCL 10
GGD+CL
Sbjct: 109 GGDICL 114


>sp|Y355_METM5|UPF0280 protein MmarC5_0355|Methanococcus maripaludis (strain C5 /

Query: 5 GGDLCL 10
GGD+CL
Sbjct: 109 GGDICL 114


>sp|Y482_METM7|UPF0280 protein MmarC7_0482|Methanococcus maripaludis (strain C7 /

Query: 5 GGDLCL 10
GGD+CL
Sbjct: 109 GGDICL 114


>sp|PYRG_METTP|CTP synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 KVGGGDLCL 10
+ GG ++CL
Sbjct: 130 RTGGSEICL 138


>sp|SYS_THESM|SERINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 2 KVGGGDL 8
K+GG DL
Sbjct: 168 KIGGADL 174


>sp|AATE_METS3|A-TYPE ATP synthase subunit E|Methanobrevibacter smithii (strain ATCC

Query: 2 KVGGGDL 8
++GGGDL
Sbjct: 120 ELGGGDL 126




98|SequenceR|495|486|QIIILGKVGG

>sp|PURL_PYRAB|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrococcus abyssi (strain GE5 /

Query: 1 QIIILGKVGG 10
+I I+G+VGG
Sbjct: 663 KISIVGRVGG 672


>sp|HTAXP_HALS3|HEAT repeat-containing taxis protein OE_2401F|Halobacterium salinarum

Query: 5 LGKVGG 10
LGKVGG
Sbjct: 367 LGKVGG 372


>sp|Y973_METJA|UNCHARACTERIZED protein MJ0973|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 IILGKVGG 10
IIL K+GG
Sbjct: 28 IILKKIGG 35


>sp|PURL_METJA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanocaldococcus jannaschii (strain ATCC

Query: 4 ILGKVGG 10
I+GKVGG
Sbjct: 692 IIGKVGG 698


>sp|PURL_PYRFU|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrococcus furiosus (strain ATCC 43587

Query: 2 IIILGKVGG 10
I +LG++GG
Sbjct: 664 ITLLGRIGG 672


>sp|PURL_METAC|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 ILGKVGG 10
++GKVGG
Sbjct: 677 VIGKVGG 683




99|SequenceR|500|491|IAILLQIIIL

***** No hits found ******


100|SequenceR|505|496|GSAKEIAILL

>sp|THSB_ARCFU|THERMOSOME subunit beta|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GSAKEIAILL 10
GSA E+A+++
Sbjct: 506 GSATEVAVMI 515


>sp|RAD50_METAC|DNA double-strand break repair Rad50|Methanosarcina acetivorans (strain

Query: 1 GSAKEIAILL 10
G+A EIA+L+
Sbjct: 409 GAADEIALLI 418




101|SequenceR|510|501|DKTAVGSAKE

>sp|KPRS_METTH|RIBOSE-PHOSPHATE pyrophosphokinase|Methanothermobacter thermautotrophicus (strain

Query: 1 DKTAVGSAKE 10
DK A+G A+E
Sbjct: 162 DKGALGHARE 171




102|SequenceR|515|506|VWDFLDKTAV

>sp|PYRH_METST|URIDYLATE kinase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 WDFLDKTAV 10
++F+DKTA+
Sbjct: 180 YEFIDKTAI 188


>sp|GLYA_ARCFU|SERINE hydroxymethyltransferase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 WDFLDKTA 9
WD L+KTA
Sbjct: 359 WDSLEKTA 366


>sp|PANB_THEKO|3-METHYL-2-OXOBUTANOATE hydroxymethyltransferase|Thermococcus kodakarensis (strain ATCC

Query: 2 WDFLDK 7
W+FLDK
Sbjct: 262 WEFLDK 267


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 VWDFLDKTAV 10
VWD LD TAV
Sbjct: 874 VWDKLDWTAV 883


>sp|RNZ_HALSA|RIBONUCLEASE Z|Halobacterium salinarum (strain ATCC 700922

Query: 2 WDFLDKT 8
WDF D+T
Sbjct: 77 WDFNDRT 83


>sp|RNZ_HALS3|RIBONUCLEASE Z|Halobacterium salinarum (strain ATCC 29341

Query: 2 WDFLDKT 8
WDF D+T
Sbjct: 77 WDFNDRT 83


>sp|Y3504_METJA|UNCHARACTERIZED protein MJECL04|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WDFLDK 7
WD+LDK
Sbjct: 198 WDYLDK 203


>sp|SODF_ACIAM|SUPEROXIDE dismutase [Fe]|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 2 WDFLDK 7
WDF DK
Sbjct: 198 WDFADK 203


>sp|PYRF_METAC|OROTIDINE 5'-phosphate decarboxylase|Methanosarcina acetivorans (strain

Query: 1 VWDFLDKTAV 10
VW+F+D V
Sbjct: 26 VWEFVDAIKV 35


>sp|PYRF_METTE|OROTIDINE 5'-phosphate decarboxylase|Methanosarcina thermophila

Query: 1 VWDFLDKTAV 10
VW+F+D V
Sbjct: 20 VWEFVDAIKV 29


>sp|SYS_PICTO|SERINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 WDFLDK 7
WDF D+
Sbjct: 314 WDFFDE 319


>sp|SYS_THEAC|SERINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 WDFLDK 7
WDFL++
Sbjct: 315 WDFLEE 320


>sp|HELS_PYRAB|ATP-DEPENDENT DNA helicase Hel308|Pyrococcus abyssi (strain GE5 /

Query: 1 VWDFLDKT 8
++DFL++T
Sbjct: 433 IYDFLERT 440


>sp|ENGB_PYRAB|PROBABLE GTP-binding protein EngB|Pyrococcus abyssi (strain GE5 /

Query: 2 WDFLDKTAV 10
WD +DKT +
Sbjct: 174 WDEIDKTFI 182


>sp|Y27A_AERPE|UPF0175 protein APE_0276a|Aeropyrum pernix (strain ATCC 700893

Query: 2 WDFLDKTA 9
WDFL+ A
Sbjct: 56 WDFLELLA 63


>sp|DP2L_METKA|DNA polymerase II large subunit|Methanopyrus kandleri (strain AV19 /

Query: 2 WDFLDK 7
W+FL+K
Sbjct: 305 WEFLEK 310


>sp|HELS_PYRHO|ATP-DEPENDENT DNA helicase Hel308|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 VWDFLDKT 8
++DFL++T
Sbjct: 433 IYDFLERT 440


>sp|THII_METAC|PROBABLE tRNA sulfurtransferase|Methanosarcina acetivorans (strain ATCC

Query: 1 VWDFLDK 7
VWD L+K
Sbjct: 153 VWDSLEK 159




103|SequenceR|520|511|TSTGAVWDFL

>sp|LYSJ_PYRAE|PUTATIVE [LysW]-aminoadipate semialdehyde/glutamate semialdehyde

Query: 3 TGAVWDF 9
TGAVW F
Sbjct: 218 TGAVWAF 224


>sp|LEUD_PYRHO|3-ISOPROPYLMALATE dehydratase small subunit|Pyrococcus horikoshii (strain ATCC

Query: 2 STGAVWDF 9
+TG VW F
Sbjct: 3 TTGKVWKF 10


>sp|ASPGP_PYRCJ|PLANT-TYPE L-asparaginase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 TSTGAVW 7
TSTG VW
Sbjct: 185 TSTGGVW 191


>sp|LEUD2_PYRAB|3-ISOPROPYLMALATE dehydratase small subunit 2|Pyrococcus abyssi (strain GE5 /

Query: 2 STGAVWDF 9
+TG VW F
Sbjct: 3 TTGRVWKF 10


>sp|ILVC_CENSY|KETOL-ACID reductoisomerase (NADP(+))|Cenarchaeum symbiosum (strain A)

Query: 2 STGAVWD 8
STG WD
Sbjct: 157 STGGAWD 163




104|SequenceR|525|516|ALIGGTSTGA

>sp|DP2L_METBF|DNA polymerase II large subunit|Methanosarcina barkeri (strain Fusaro /

Query: 2 LIGGTSTGA 10
LIGG TG
Sbjct: 279 LIGGAKTGG 287


>sp|GGGPS_CENSY|GERANYLGERANYLGLYCERYL phosphate synthase|Cenarchaeum symbiosum (strain A)

Query: 2 LIGGTSTG 9
L+GG+STG
Sbjct: 49 LVGGSSTG 56


>sp|FUMC_SACS2|FUMARATE hydratase class II|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 IGGTSTG 9
IGGT+TG
Sbjct: 199 IGGTATG 205


>sp|FLGA2_HALVD|FLAGELLIN A2|Haloferax volcanii (strain ATCC 29605

Query: 2 LIGGTSTG 9
LIGG STG
Sbjct: 177 LIGGLSTG 184


>sp|AROC_METTP|CHORISMATE synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 LIGGTSTGA 10
++GG STGA
Sbjct: 295 ILGGISTGA 303




105|SequenceR|530|521|HLIALALIGG

>sp|IF2G_HALLT|TRANSLATION initiation factor 2 subunit|Halorubrum lacusprofundi (strain ATCC

Query: 1 HLIALALIG 9
HL+AL LIG
Sbjct: 129 HLMALDLIG 137


>sp|IF2G_AERPE|TRANSLATION initiation factor 2 subunit|Aeropyrum pernix (strain ATCC 700893

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 132 HLVALEIIG 140


>sp|IF2G_ARCFU|TRANSLATION initiation factor 2 subunit|Archaeoglobus fulgidus (strain ATCC

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 146 HLMALQIIG 154


>sp|IF2G_METKA|TRANSLATION initiation factor 2 subunit|Methanopyrus kandleri (strain AV19 /

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 128 HLMALEIIG 136


>sp|AGLB_METVO|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase|Methanococcus voltae

Query: 1 HLIALALIG 9
HL A+ LIG
Sbjct: 382 HLFAIGLIG 390


>sp|IF2G_NATPD|TRANSLATION initiation factor 2 subunit|Natronomonas pharaonis (strain ATCC

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 129 HLMALDIIG 137


>sp|IF2G_HALSA|TRANSLATION initiation factor 2 subunit|Halobacterium salinarum (strain ATCC

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 130 HLMALDIIG 138


>sp|IF2G_HALS3|TRANSLATION initiation factor 2 subunit|Halobacterium salinarum (strain ATCC

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 130 HLMALDIIG 138


>sp|IF2G_PYRHO|TRANSLATION initiation factor 2 subunit|Pyrococcus horikoshii (strain ATCC

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 129 HLMALQIIG 137


>sp|IF2G_SACS2|TRANSLATION initiation factor 2 subunit|Saccharolobus solfataricus (strain ATCC

Query: 1 HLIALALIG 9
H +AL +IG
Sbjct: 132 HFVALGIIG 140


>sp|IF2G_PYRAB|TRANSLATION initiation factor 2 subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 129 HLMALQIIG 137


>sp|IF2G_PYRFU|TRANSLATION initiation factor 2 subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 129 HLMALQIIG 137


>sp|IF2G_HALWD|TRANSLATION initiation factor 2 subunit|Haloquadratum walsbyi (strain DSM 16790

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 129 HLMALDIIG 137


>sp|IF2G_METMA|TRANSLATION initiation factor 2 subunit|Methanosarcina mazei (strain ATCC

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 149 HLMALDIIG 157


>sp|IF2G_METTH|TRANSLATION initiation factor 2 subunit|Methanothermobacter thermautotrophicus

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 127 HLMALDVIG 135


>sp|RIFK_METB6|RIBOFLAVIN kinase|Methanoregula boonei (strain DSM 21154

Query: 2 LIALALIGG 10
L ALAL+GG
Sbjct: 10 LKALALMGG 18


>sp|IF2G_METAC|TRANSLATION initiation factor 2 subunit|Methanosarcina acetivorans (strain ATCC

Query: 1 HLIALALIG 9
HL+AL +IG
Sbjct: 161 HLMALDIIG 169


>sp|MCM_SACS2|MINICHROMOSOME maintenance protein MCM|Saccharolobus solfataricus (strain ATCC

Query: 3 IALALIGG 10
+ALAL GG
Sbjct: 313 LALALFGG 320


>sp|MCM_SACI5|MINICHROMOSOME maintenance protein MCM|Saccharolobus islandicus (strain REY15A)

Query: 3 IALALIGG 10
+ALAL GG
Sbjct: 313 LALALFGG 320


>sp|GPMI2_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanosarcina barkeri (strain Fusaro /

Query: 1 HLIALALIGG 10
HL+ LA GG
Sbjct: 114 HLMGLASCGG 123


>sp|IF2G_THEKO|TRANSLATION initiation factor 2 subunit|Thermococcus kodakarensis (strain ATCC

Query: 1 HLIALALIG 9
HL+AL ++G
Sbjct: 128 HLMALQIVG 136


>sp|IF2G_THEON|TRANSLATION initiation factor 2 subunit|Thermococcus onnurineus (strain NA1)

Query: 1 HLIALALIG 9
HL+AL ++G
Sbjct: 128 HLMALQIVG 136


>sp|APGM_METMJ|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanoculleus marisnigri (strain ATCC

Query: 1 HLIALALIG 9
H ALALIG
Sbjct: 149 HRAALALIG 157




106|SequenceR|535|526|AMSKSHLIAL

***** No hits found ******


107|SequenceR|540|531|MGRMYAMSKS

>sp|AMTAB_PYRHO|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 1 MGRMYAMSK 9
MGRMY + +
Sbjct: 266 MGRMYTVEE 274


>sp|Y188_METJA|UNCHARACTERIZED protein MJ0188|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MGRMYAMSK 9
+GRMY + K
Sbjct: 167 VGRMYELKK 175


>sp|RFCL_METAR|REPLICATION factor C large subunit|Methanocella arvoryzae (strain DSM 22066

Query: 4 MYAMSK 9
MYAMSK
Sbjct: 145 MYAMSK 150




108|SequenceR|545|536|KMRFYMGRMY

>sp|PFDA_METAR|PREFOLDIN subunit alpha|Methanocella arvoryzae (strain DSM 22066

Query: 1 KMRFYMGRM 9
KM+ Y GRM
Sbjct: 16 KMQAYQGRM 24


>sp|DNLI_METB6|DNA ligase|Methanoregula boonei (strain DSM 21154

Query: 2 MRFYMGRMY 10
+RF MGR++
Sbjct: 42 VRFVMGRIF 50


>sp|TSGAD_HALVD|PUTATIVE ABC transporter glucose-binding protein|Haloferax volcanii (strain

Query: 2 MRFYMGRMY 10
M YMGR+Y
Sbjct: 169 MGRYMGRIY 177


>sp|SYH_METS5|HISTIDINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 4 FYMGRMY 10
FY+GR+Y
Sbjct: 102 FYIGRVY 108


>sp|DNLI_METMJ|DNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 MRFYMGRMY 10
+RF MGR++
Sbjct: 42 VRFVMGRVF 50


>sp|VHTA_METMA|F420 non-reducing hydrogenase II large|Methanosarcina mazei (strain ATCC

Query: 4 FYMGRMY 10
F+MGR Y
Sbjct: 560 FHMGRSY 566


>sp|VHOA_METMA|F420 non-reducing hydrogenase I large|Methanosarcina mazei (strain ATCC

Query: 4 FYMGRMY 10
F+MGR Y
Sbjct: 560 FHMGRSY 566


>sp|TRM56_STAMF|TRNA (cytidine(56)-2'-O)-methyltransferase|Staphylothermus marinus

Query: 3 RFYMGR 8
RFYMG+
Sbjct: 145 RFYMGK 150


>sp|APGM_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina acetivorans (strain ATCC

Query: 1 KMRFYMGRMY 10
K+RFY G Y
Sbjct: 134 KVRFYPGISY 143


>sp|PAT_SACS2|N-ACETYLTRANSFERASE Pat|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 KMRFYMGRMY 10
KMRFY +Y
Sbjct: 131 KMRFYEDEVY 140


>sp|CAS2A_PYRAE|CRISPR-ASSOCIATED endoribonuclease Cas2 1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 FYMGRM 9
FY+GRM
Sbjct: 34 FYVGRM 39




109|SequenceR|550|541|RFVEDKMRFY

>sp|SYH_METLZ|HISTIDINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 RFVEDKMR 8
RFVE KMR
Sbjct: 20 RFVEQKMR 27


>sp|SYY1_PYRAE|TYROSINE--TRNA ligase 1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 RFVEDKMRFY 10
R V DK+RFY
Sbjct: 199 RQVADKIRFY 208


>sp|SYY_PYRIL|TYROSINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 RFVEDKMRFY 10
R V DK+RFY
Sbjct: 199 RQVADKIRFY 208


>sp|SYY_PYRCJ|TYROSINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 RFVEDKMRFY 10
R V DK+RFY
Sbjct: 199 RQVADKIRFY 208


>sp|Y360_METJA|UNCHARACTERIZED protein MJ0360|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RFVEDKMRFY 10
+FVE K RFY
Sbjct: 75 KFVEIKARFY 84


>sp|Y101_METAC|PUTATIVE RNase MA_0101|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 FVEDKMRFY 10
FVED+MR +
Sbjct: 33 FVEDEMRVF 41


>sp|SEPS_META3|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 FVEDKMRFY 10
F+E K++FY
Sbjct: 394 FIEKKIKFY 402


>sp|GUAAB_PYRHO|GMP synthase [glutamine-hydrolyzing] subunit B|Pyrococcus horikoshii

Query: 1 RFVEDKMR 8
RFVE+K+R
Sbjct: 5 RFVEEKVR 12


>sp|SYH_METJA|HISTIDINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RFVEDKMR 8
RFVE+K+R
Sbjct: 23 RFVENKLR 30


>sp|IXTPA_METMA|DITP/XTP pyrophosphatase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 RFVEDKM 7
RFVEDK+
Sbjct: 83 RFVEDKL 89


>sp|KVAP_AERPE|VOLTAGE-GATED potassium channel|Aeropyrum pernix (strain ATCC 700893

Query: 5 DKMRFY 10
DK+RFY
Sbjct: 159 DKIRFY 164


>sp|IXTPA_METAC|DITP/XTP pyrophosphatase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 RFVEDKM 7
RFVEDK+
Sbjct: 83 RFVEDKL 89


>sp|MCM_SULAC|MINICHROMOSOME maintenance protein MCM|Sulfolobus acidocaldarius (strain ATCC

Query: 1 RFVEDKMRF 9
+F+EDK F
Sbjct: 180 KFIEDKSEF 188


>sp|SYI_NATPD|ISOLEUCINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 VEDKMRFY 10
VED RFY
Sbjct: 725 VEDVSRFY 732


>sp|SRP54_THEAC|SIGNAL recognition particle 54 kDa|Thermoplasma acidophilum (strain ATCC

Query: 4 EDKMRFY 10
EDK+R Y
Sbjct: 368 EDKLRMY 374


>sp|SYI_HALMA|ISOLEUCINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 3 VEDKMRFY 10
VED RFY
Sbjct: 728 VEDVSRFY 735




110|SequenceR|555|546|YPRSGRFVED

>sp|NTPTH_PYRAB|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Pyrococcus abyssi (strain GE5 /

Query: 1 YPRSGRFVED 10
YPR GR+V D
Sbjct: 68 YPRVGRYVVD 77


>sp|NTPTH_PYRFU|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Pyrococcus furiosus (strain ATCC 43587

Query: 1 YPRSGRFVED 10
YPR GR+V D
Sbjct: 71 YPRLGRYVID 80


>sp|RL6_METTH|LARGE ribosomal subunit protein uL6|Methanothermobacter

Query: 1 YPRSGRFVED 10
+PR+ RFV D
Sbjct: 117 HPRTARFVGD 126


>sp|PYCA_ARCFU|PYRUVATE carboxylase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 YPRSGRFV 8
YPRSGR +
Sbjct: 346 YPRSGRIL 353


>sp|NTPTH_PYRHO|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 YPRSGRFVED 10
YPR G++V D
Sbjct: 68 YPRLGKYVID 77


>sp|SYFA_METAR|PHENYLALANINE--TRNA ligase alpha subunit|Methanocella arvoryzae (strain DSM 22066

Query: 1 YPRSGRFVE 9
+P++GR++E
Sbjct: 424 HPKTGRWIE 432


>sp|RL31_HALLT|LARGE ribosomal subunit protein eL31|Halorubrum lacusprofundi (strain

Query: 3 RSGRFVED 10
R+ RFVED
Sbjct: 74 RAARFVED 81


>sp|TGT_ARCFU|PUTATIVE queuine tRNA-ribosyltransferase|Archaeoglobus fulgidus (strain ATCC

Query: 2 PRSGRFVE 9
P+SGR VE
Sbjct: 148 PKSGRIVE 155


>sp|OFOA2_AERPE|2-OXOACID:FERREDOXIN oxidoreductase 2, subunit alpha|Aeropyrum pernix (strain ATCC

Query: 1 YPRSGRFVED 10
YP GR VE+
Sbjct: 564 YPFPGRLVEE 573


>sp|EF1A_STAMF|ELONGATION factor 1-alpha|Staphylothermus marinus (strain ATCC 43588

Query: 2 PRSGRFVED 10
PR+G+ VE+
Sbjct: 368 PRTGKVVEE 376


>sp|K6PF_PYRFU|ADP-SPECIFIC phosphofructokinase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 PRSGRFV 8
P SGRF+
Sbjct: 183 PHSGRFI 189


>sp|SYI_METTH|ISOLEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 SGRFVED 10
SGRFV+D
Sbjct: 355 SGRFVKD 361


>sp|TOP6A_ARCFU|TYPE 2 DNA topoisomerase 6|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PRSGRFVED 10
P S R VED
Sbjct: 111 PESDRLVED 119


>sp|EF1A_THECE|ELONGATION factor 1-alpha|Thermococcus celer

Query: 2 PRSGRFVED 10
PR+G VE+
Sbjct: 364 PRTGNIVEE 372


>sp|KPYK_AERPE|PYRUVATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 1 YPRSGRFVE 9
Y ++GRF E
Sbjct: 366 YSKTGRFAE 374


>sp|EF1A_THEKO|ELONGATION factor 1-alpha|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 PRSGRFVED 10
PR+G VE+
Sbjct: 364 PRTGNIVEE 372


>sp|EF1A_THEGJ|ELONGATION factor 1-alpha|Thermococcus gammatolerans (strain DSM 15229

Query: 2 PRSGRFVED 10
PR+G VE+
Sbjct: 364 PRTGNIVEE 372


>sp|EF1A_PYRHO|ELONGATION factor 1-alpha|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 PRSGRFVED 10
PR+G VE+
Sbjct: 364 PRTGNIVEE 372


>sp|DNAG_METHJ|DNA primase DnaG|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 YPRSGRFVED 10
YP G VED
Sbjct: 241 YPTRGESVED 250


>sp|K6PF_PYRHO|ADP-SPECIFIC phosphofructokinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 PRSGRFV 8
P SGRF+
Sbjct: 181 PNSGRFI 187


>sp|ILVC_SULTO|KETOL-ACID reductoisomerase (NADP(+))|Sulfurisphaera tokodaii (strain DSM

Query: 3 RSGRFVED 10
RSG+F E+
Sbjct: 283 RSGKFAEE 290


>sp|ILVC_METS5|KETOL-ACID reductoisomerase (NAD(P)(+))|Metallosphaera sedula (strain ATCC

Query: 3 RSGRFVED 10
RSG+F E+
Sbjct: 286 RSGKFAEE 293




111|SequenceR|560|551|LPGSEYPRSG

>sp|TRUB_THEAC|PROBABLE tRNA pseudouridine synthase B|Thermoplasma acidophilum (strain ATCC

Query: 3 GSEYPRSG 10
G YPRSG
Sbjct: 342 GRVYPRSG 349


>sp|MCRG_METBF|METHYL-COENZYME M reductase subunit gamma|Methanosarcina barkeri (strain Fusaro /

Query: 2 PGSEYPRS 9
PGS+YP +
Sbjct: 46 PGSDYPST 53


>sp|TRI_SACS2|TRICORN protease homolog|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 GSEYPRSG 10
G +YPR+G
Sbjct: 943 GYDYPRNG 950


>sp|IPK_THEAC|ISOPENTENYL phosphate kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 LPGSEYPRS 9
LPG + PRS
Sbjct: 58 LPGPKNPRS 66


>sp|Y142_AERPE|UNCHARACTERIZED HTH-type transcriptional regulator APE_0142|Aeropyrum pernix

Query: 1 LPGSEYPR 8
LPG EY R
Sbjct: 34 LPGGEYAR 41


>sp|PYCA_ARCFU|PYRUVATE carboxylase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PGSEYPRSG 10
P + YPRSG
Sbjct: 342 PVNFYPRSG 350


>sp|SYA_THEAC|ALANINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 PGSEYP 7
PG+EYP
Sbjct: 795 PGAEYP 800


>sp|RS2_THEAC|SMALL ribosomal subunit protein uS2|Thermoplasma acidophilum (strain

Query: 1 LPGSEYPRSG 10
+P EY +SG
Sbjct: 7 IPEEEYQKSG 16


>sp|RS2_PICTO|SMALL ribosomal subunit protein uS2|Picrophilus torridus (strain ATCC

Query: 1 LPGSEYPRSG 10
+P EY +SG
Sbjct: 8 IPEDEYQKSG 17


>sp|NCPP_ARCFU|PROBABLE inosine/xanthosine triphosphatase|Archaeoglobus fulgidus (strain

Query: 2 PGSEYPR 8
PG EYP+
Sbjct: 99 PGFEYPK 105


>sp|UREG_CENSY|UREASE accessory protein UreG|Cenarchaeum symbiosum (strain A)

Query: 3 GSEYPRSG 10
G +YPR G
Sbjct: 134 GDKYPRKG 141


>sp|TBPD_HALSA|TATA-BOX-BINDING protein D|Halobacterium salinarum (strain ATCC 700922

Query: 1 LPGSEY 6
LPG+EY
Sbjct: 32 LPGAEY 37


>sp|PRIS_METHJ|DNA primase small subunit PriS|Methanospirillum hungatei JF-1 (strain

Query: 1 LPGSEYPRSG 10
LPGS + +SG
Sbjct: 301 LPGSLHAKSG 310


>sp|MCRG_METTM|METHYL-COENZYME M reductase I subunit|Methanothermobacter marburgensis (strain

Query: 2 PGSEYP 7
PG EYP
Sbjct: 45 PGEEYP 50


>sp|MCRG_METTH|METHYL-COENZYME M reductase I subunit|Methanothermobacter thermautotrophicus

Query: 2 PGSEYP 7
PG EYP
Sbjct: 45 PGEEYP 50


>sp|MCRG_METFE|METHYL-COENZYME M reductase subunit gamma|Methanothermus fervidus

Query: 2 PGSEYP 7
PG EYP
Sbjct: 45 PGEEYP 50


>sp|TBPB_HALSA|TATA-BOX-BINDING protein B|Halobacterium salinarum (strain ATCC 700922

Query: 1 LPGSEY 6
LPG+EY
Sbjct: 32 LPGAEY 37


>sp|PRIS_METBU|DNA primase small subunit PriS|Methanococcoides burtonii (strain DSM

Query: 1 LPGSEYPRSG 10
LPGS + +SG
Sbjct: 309 LPGSLHGKSG 318




112|SequenceR|565|556|KLFEELPGSE

>sp|CHEB_THEKO|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Thermococcus

Query: 1 KLFEELPG 8
K+FE+LPG
Sbjct: 181 KVFEKLPG 188


>sp|RLME_NITMS|RIBOSOMAL RNA large subunit methyltransferase|Nitrosopumilus maritimus

Query: 4 EELPGSE 10
EE+PG+E
Sbjct: 77 EEIPGAE 83


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 KLFEELPGS 9
KLF E PGS
Sbjct: 515 KLFYERPGS 523


>sp|Y1547_METJA|PUTATIVE protein adenylyltransferase MJ1547|Methanocaldococcus jannaschii

Query: 1 KLFEELP 7
K+FEELP
Sbjct: 50 KIFEELP 56


>sp|SRP54_SULAC|SIGNAL recognition particle 54 kDa|Sulfolobus acidocaldarius (strain ATCC

Query: 1 KLFEELPGS 9
K+F+ LPG+
Sbjct: 346 KIFQMLPGA 354


>sp|AGLB_HALVD|DOLICHYL-MONOPHOSPHOOLIGOSACCHARIDE--PROTEIN glycotransferase AglB|Haloferax volcanii (strain ATCC 29605

Query: 1 KLFEELPGS 9
K FE +PG+
Sbjct: 881 KTFERVPGA 889


>sp|XPD_THEAC|ATP-DEPENDENT DNA helicase XPD|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 LFEELPGSE 10
LF+ELP +E
Sbjct: 126 LFDELPTAE 134


>sp|CMR1_SACS2|CRISPR system CMR subunit Cmr1|Saccharolobus solfataricus (strain ATCC

Query: 1 KLFEELPGSE 10
+LFE++ GSE
Sbjct: 69 RLFEDVFGSE 78


>sp|AATA2_METHJ|A-TYPE ATP synthase subunit A|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 340 LEEMPGEE 347


>sp|AATA_METST|A-TYPE ATP synthase subunit A|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 345 LEEMPGEE 352


>sp|SRP54_ACIAM|SIGNAL recognition particle 54 kDa|Acidianus ambivalens (Desulfurolobus

Query: 1 KLFEELPG 8
KLF+ LPG
Sbjct: 349 KLFQLLPG 356


>sp|CARB_HALSA|CARBAMOYL phosphate synthase large chain|Halobacterium salinarum (strain ATCC

Query: 3 FEELPGSE 10
F+ LPGS+
Sbjct: 906 FDRLPGSD 913


>sp|AATA_THEAC|A-TYPE ATP synthase subunit A|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 516 LEEMPGEE 523


>sp|PPSA_PYRAB|PROBABLE phosphoenolpyruvate synthase|Pyrococcus abyssi (strain GE5 /

Query: 3 FEELPGSE 10
F E+PG E
Sbjct: 596 FREMPGGE 603


>sp|AATA_THEVO|A-TYPE ATP synthase subunit A|Thermoplasma volcanium (strain ATCC 51530

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 528 LEEMPGEE 535


>sp|AATA_METB6|A-TYPE ATP synthase subunit A|Methanoregula boonei (strain DSM 21154

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 350 LEEMPGEE 357


>sp|PPSA_PYRHO|PROBABLE phosphoenolpyruvate synthase|Pyrococcus horikoshii (strain ATCC

Query: 3 FEELPGSE 10
F E+PG E
Sbjct: 599 FREMPGGE 606


>sp|PPSA_PYRFU|PHOSPHOENOLPYRUVATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 FEELPGSE 10
F E+PG E
Sbjct: 596 FREMPGGE 603


>sp|GCS2_HALLT|GLUTAMATE--CYSTEINE ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 KLFEELPGS 9
K+FE LP +
Sbjct: 185 KIFENLPNT 193


>sp|RL4_THEVO|LARGE ribosomal subunit protein uL4|Thermoplasma volcanium (strain ATCC

Query: 1 KLFEELPG 8
K+F+ LPG
Sbjct: 209 KVFKSLPG 216


>sp|AATA_METM5|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C5 /

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 345 LEEMPGEE 352


>sp|AATA_METAR|A-TYPE ATP synthase subunit A|Methanocella arvoryzae (strain DSM 22066

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 342 LEEMPGEE 349


>sp|AATA_METVS|A-TYPE ATP synthase subunit A|Methanococcus vannielii (strain ATCC 35089

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 345 LEEMPGEE 352


>sp|AATA_METM7|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C7 /

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 345 LEEMPGEE 352


>sp|AATA_METM6|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C6 /

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 345 LEEMPGEE 352


>sp|PURL_METTP|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanothrix thermoacetophila (strain DSM

Query: 3 FEELPGSE 10
F+EL GSE
Sbjct: 611 FDELGGSE 618


>sp|AATA_METBA|A-TYPE ATP synthase subunit A|Methanosarcina barkeri

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 341 LEEMPGEE 348


>sp|AATA_METMP|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain DSM 14266

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 345 LEEMPGEE 352


>sp|AATA_STAMF|A-TYPE ATP synthase subunit A|Staphylothermus marinus (strain ATCC 43588

Query: 3 FEELPGSE 10
EELPG E
Sbjct: 344 LEELPGEE 351


>sp|Y1357_HALVD|PUTATIVE transcriptional regulator HVO_1357|Haloferax volcanii (strain ATCC

Query: 2 LFEELPGS 9
+FE++PG+
Sbjct: 277 VFEDIPGA 284


>sp|AATA_METLZ|A-TYPE ATP synthase subunit A|Methanocorpusculum labreanum (strain ATCC

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 345 LEEMPGEE 352


>sp|AATA1_METHJ|A-TYPE ATP synthase subunit A|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 344 LEEMPGEE 351


>sp|AATA_METMJ|A-TYPE ATP synthase subunit A|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 347 LEEMPGEE 354


>sp|AATA_METTP|A-TYPE ATP synthase subunit A|Methanothrix thermoacetophila (strain DSM

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 341 LEEMPGEE 348


>sp|AATA_METS3|A-TYPE ATP synthase subunit A|Methanobrevibacter smithii (strain ATCC

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 346 LEEMPGEE 353


>sp|AATA_METBF|A-TYPE ATP synthase subunit A|Methanosarcina barkeri (strain Fusaro /

Query: 3 FEELPGSE 10
EE+PG E
Sbjct: 341 LEEMPGEE 348




113|SequenceR|570|561|EGFERKLFEE

>sp|PURO_METS3|IMP cyclohydrolase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 EGFERKLFE 9
EGFE+ +FE
Sbjct: 46 EGFEKDIFE 54


>sp|ALF1_THETK|FRUCTOSE-BISPHOSPHATE aldolase class 1|Thermoproteus tenax (strain ATCC 35583

Query: 2 GFERKLFEE 10
GFE K+FEE
Sbjct: 118 GFEWKMFEE 126


>sp|Y1582_METJA|UNCHARACTERIZED metal-dependent hydrolase MJ1582|Methanocaldococcus jannaschii

Query: 2 GFERKLFE 9
GFERK+F+
Sbjct: 132 GFERKIFD 139


>sp|Y243_ARCFU|UNCHARACTERIZED protein AF_0243|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 FERKLFE 9
FERKLFE
Sbjct: 126 FERKLFE 132


>sp|Y154_ARCFU|UNCHARACTERIZED protein AF_0154|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EGFERKLFEE 10
EGFE LFE+
Sbjct: 204 EGFEHPLFEK 213


>sp|SYA_METMJ|ALANINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 EGFERKL 7
EGFERK+
Sbjct: 14 EGFERKV 20


>sp|ECFA_METMP|ENERGY-COUPLING factor transporter ATP-binding protein|Methanococcus maripaludis

Query: 1 EGFERK 6
EGFERK
Sbjct: 130 EGFERK 135


>sp|RL10_SULAC|LARGE ribosomal subunit protein uL10|Sulfolobus acidocaldarius (strain

Query: 2 GFERKLFE 9
G++ KLFE
Sbjct: 75 GYDTKLFE 82


>sp|PUR2_METS3|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 EGFERKLFEE 10
+ F RKLFE+
Sbjct: 102 KSFMRKLFED 111


>sp|Y1519_METJA|UNCHARACTERIZED protein MJ1519|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EGFERKLFEE 10
+ FER +FEE
Sbjct: 400 DSFERIIFEE 409


>sp|RSMA_META3|PROBABLE ribosomal RNA small subunit|Methanococcus aeolicus (strain ATCC

Query: 1 EGFERKLFE 9
+GF R LF+
Sbjct: 196 DGFNRALFQ 204


>sp|PUR2_METST|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 EGFERKLFEE 10
+ F RKLFE+
Sbjct: 103 KAFMRKLFED 112


>sp|PUR2_METTH|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 EGFERKLFEE 10
+ F RKLFE+
Sbjct: 102 KSFMRKLFED 111




114|SequenceR|575|566|TMKTHEGFER

>sp|GLMS_METKA|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Methanopyrus kandleri (strain AV19 /

Query: 1 TMKTHEGFER 10
M TH GFE+
Sbjct: 391 VMYTHAGFEK 400


>sp|HYPB_METJA|PROBABLE hydrogenase maturation factor HypB|Methanocaldococcus jannaschii

Query: 1 TMKTHEGFER 10
++KT EGF++
Sbjct: 199 SLKTMEGFDK 208


>sp|G3P_METM7|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Methanococcus maripaludis (strain C7 /

Query: 1 TMKTHEGFE 9
T+K EGF+
Sbjct: 251 TLKASEGFD 259


>sp|G3P_METM6|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Methanococcus maripaludis (strain C6 /

Query: 1 TMKTHEGFE 9
T+K EGF+
Sbjct: 251 TLKASEGFD 259


>sp|G3P_METM5|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Methanococcus maripaludis (strain C5 /

Query: 1 TMKTHEGFE 9
T+K EGF+
Sbjct: 251 TLKASEGFD 259


>sp|IORB_METTM|INDOLEPYRUVATE oxidoreductase subunit IorB|Methanothermobacter marburgensis

Query: 5 HEGFE 9
HEGFE
Sbjct: 187 HEGFE 191


>sp|SYFB_THEVO|PHENYLALANINE--TRNA ligase beta subunit|Thermoplasma volcanium (strain ATCC 51530

Query: 2 MKTHEGFE 9
MKT++ FE
Sbjct: 155 MKTYDSFE 162


>sp|ARFB_METJA|2-AMINO-5-FORMYLAMINO-6-RIBOSYLAMINOPYRIMIDIN-4(3H)-ONE 5'-monophosphate deformylase|Methanocaldococcus jannaschii (strain

Query: 1 TMKTHEGFER 10
T+K H FE+
Sbjct: 158 TLKEHNNFEK 167




115|SequenceR|580|571|PKRVDTMKTH

>sp|FOLD_METB6|BIFUNCTIONAL protein FolD|Methanoregula boonei (strain DSM 21154

Query: 1 PKRVDT 6
PKRVDT
Sbjct: 97 PKRVDT 102


>sp|KHSE_SULTO|HOMOSERINE kinase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 PKRVDTMK 8
PK++DT K
Sbjct: 187 PKQIDTSK 194


>sp|RADB_METS3|DNA repair and recombination protein|Methanobrevibacter smithii (strain

Query: 2 KRVDTMKTH 10
KRV T+K H
Sbjct: 207 KRVATLKRH 215


>sp|Y683_METJA|UNCHARACTERIZED protein MJ0683|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KRVDTMKT 9
KR+D +KT
Sbjct: 158 KRIDALKT 165


>sp|GUAA_AERPE|GMP synthase [glutamine-hydrolyzing]|Aeropyrum pernix (strain ATCC

Query: 5 DTMKTH 10
DT+KTH
Sbjct: 340 DTIKTH 345




116|SequenceR|585|576|TLMVKPKRVD

>sp|T1R1_METJA|PUTATIVE type I restriction enzyme|Methanocaldococcus jannaschii (strain

Query: 1 TLMVKPKRVD 10
T+++ PKR+D
Sbjct: 538 TILLNPKRID 547


>sp|RPO1C_THEKO|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus kodakarensis (strain ATCC

Query: 1 TLMVKPKRV 9
TL+V+PK+V
Sbjct: 197 TLVVRPKKV 205


>sp|TRUB_SULTO|PROBABLE tRNA pseudouridine synthase B|Sulfurisphaera tokodaii (strain DSM

Query: 2 LMVKPKRV 9
++VKPKRV
Sbjct: 315 IVVKPKRV 322


>sp|GLNK1_METMA|NITROGEN regulatory protein GlnK1|Methanosarcina mazei (strain ATCC

Query: 3 MVKPKRVD 10
M++P+R+D
Sbjct: 10 MIRPERLD 17




117|SequenceR|590|581|DSLTGTLMVK

>sp|COFH2_METBF|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase 2|Methanosarcina barkeri (strain Fusaro

Query: 1 DSLTGT 6
DSLTGT
Sbjct: 167 DSLTGT 172


>sp|COFH2_METMA|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase 2|Methanosarcina mazei (strain ATCC

Query: 1 DSLTGT 6
DSLTGT
Sbjct: 167 DSLTGT 172


>sp|COFH2_METAC|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase 2|Methanosarcina acetivorans (strain

Query: 1 DSLTGT 6
DSLTGT
Sbjct: 167 DSLTGT 172




118|SequenceR|595|586|EAPQRDSLTG

>sp|TRI_SACS2|TRICORN protease homolog|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 PQRDSLT 9
P++DSLT
Sbjct: 314 PEKDSLT 320


>sp|Y1156_METJA|CELL division cycle protein 48|Methanocaldococcus jannaschii (strain

Query: 2 APQRDSLTG 10
AP+RD TG
Sbjct: 285 APKRDEATG 293


>sp|CDCH_HALSA|PROTEIN CdcH|Halobacterium salinarum (strain ATCC 700922

Query: 2 APQRDSLTG 10
AP+R+ +TG
Sbjct: 295 APKREDVTG 303


>sp|EF2_HALMA|ELONGATION factor 2|Haloarcula marismortui (strain ATCC 43049

Query: 1 EAPQRDS 7
EAPQ DS
Sbjct: 468 EAPQEDS 474


>sp|SCAF_METTH|DUF35 domain-containing scaffold protein|Methanothermobacter

Query: 3 PQRDSLTG 10
PQR +LTG
Sbjct: 13 PQRYNLTG 20


>sp|SAV_SULAC|PROTEIN SAV|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 APQRDSLTG 10
AP+R+ +TG
Sbjct: 318 APKREDVTG 326




119|SequenceR|600|591|RFLHLEAPQR

>sp|APGM_METTP|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanothrix thermoacetophila (strain DSM

Query: 2 FLHLEAP 8
+LH+EAP
Sbjct: 284 YLHIEAP 290


>sp|APGM_METMA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 FLHLEAP 8
F+H+EAP
Sbjct: 288 FVHVEAP 294


>sp|APGM_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina barkeri (strain Fusaro /

Query: 2 FLHLEAP 8
F+H+EAP
Sbjct: 288 FVHVEAP 294


>sp|APGM_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina acetivorans (strain ATCC

Query: 2 FLHLEAP 8
F+H+EAP
Sbjct: 288 FVHVEAP 294


>sp|NASA_HALMT|ASSIMILATORY nitrate reductase|Haloferax mediterranei (strain ATCC 33500

Query: 1 RFLHLEAPQR 10
RF+H +AP +
Sbjct: 689 RFVHPDAPAK 698


>sp|CCA_AERPE|CCA-ADDING enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 2 FLHLEAPQR 10
++H+E+P R
Sbjct: 351 YIHMESPSR 359


>sp|PYRG_PYRCJ|CTP synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 RFLHLEAPQR 10
RFL +E P R
Sbjct: 77 RFLDVELPHR 86


>sp|CAS1_KORCO|CRISPR-ASSOCIATED endonuclease Cas1|Korarchaeum cryptofilum (strain OPF8)

Query: 2 FLHLEAPQR 10
+LH+E P R
Sbjct: 240 YLHVERPGR 248




120|SequenceR|605|596|PADYNRFLHL

>sp|AHBD_METBF|ADOMET-DEPENDENT heme synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 PADYNRFLH 9
PADY R LH
Sbjct: 198 PADYERILH 206


>sp|NEP1_THEKO|RIBOSOMAL RNA small subunit methyltransferase|Thermococcus kodakarensis

Query: 1 PADYNRFLHL 10
P +YNRFL L
Sbjct: 103 PRNYNRFLGL 112


>sp|NEP1_SULTO|RIBOSOMAL RNA small subunit methyltransferase|Sulfurisphaera tokodaii (strain

Query: 1 PADYNRFLHL 10
P +YNRF+ L
Sbjct: 102 PKNYNRFIGL 111


>sp|NEP1_ARCFU|RIBOSOMAL RNA small subunit methyltransferase|Archaeoglobus fulgidus (strain

Query: 1 PADYNRFLHL 10
P +YNRF+ L
Sbjct: 101 PRNYNRFVGL 110


>sp|Y635_METJA|UNCHARACTERIZED protein MJ0635|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PADYNRFLHL 10
P DYN F+++
Sbjct: 41 PVDYNGFVYV 50


>sp|NEP1_PYRAB|RIBOSOMAL RNA small subunit methyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 1 PADYNRFLHL 10
P +YNRF+ L
Sbjct: 108 PRNYNRFIGL 117


>sp|NEP1_THEON|RIBOSOMAL RNA small subunit methyltransferase|Thermococcus onnurineus (strain

Query: 1 PADYNRFLHL 10
P +YNRF+ L
Sbjct: 103 PRNYNRFVGL 112


>sp|NEP1_PYRFU|RIBOSOMAL RNA small subunit methyltransferase|Pyrococcus furiosus (strain

Query: 1 PADYNRFLHL 10
P +YNRF+ L
Sbjct: 106 PRNYNRFIGL 115


>sp|NEP1_PYRHO|RIBOSOMAL RNA small subunit methyltransferase|Pyrococcus horikoshii (strain

Query: 1 PADYNRFLHL 10
P +YNRF+ L
Sbjct: 108 PRNYNRFIGL 117


>sp|NEP1_THEVO|RIBOSOMAL RNA small subunit methyltransferase|Thermoplasma volcanium (strain

Query: 1 PADYNRFLHL 10
P YNRF+ L
Sbjct: 105 PKSYNRFIGL 114


>sp|OFOA2_AERPE|2-OXOACID:FERREDOXIN oxidoreductase 2, subunit alpha|Aeropyrum pernix (strain ATCC

Query: 1 PADYNRF 7
PADY R+
Sbjct: 451 PADYRRY 457


>sp|HPRT_METTP|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanothrix thermoacetophila (strain

Query: 2 ADYNRFLH 9
DYN F+H
Sbjct: 18 GDYNYFIH 25


>sp|NEP1_THEAC|RIBOSOMAL RNA small subunit methyltransferase|Thermoplasma acidophilum

Query: 1 PADYNRFLHL 10
P YNRF+ L
Sbjct: 105 PKSYNRFIGL 114


>sp|SYM_PYRCJ|METHIONINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 PADYNRFL 8
PADY RF+
Sbjct: 352 PADYWRFI 359


>sp|NEP1_THESM|RIBOSOMAL RNA small subunit methyltransferase|Thermococcus sibiricus (strain

Query: 1 PADYNRFLHL 10
P +YNRF+ L
Sbjct: 103 PRNYNRFVGL 112


>sp|NEP1_STAMF|RIBOSOMAL RNA small subunit methyltransferase|Staphylothermus marinus (strain

Query: 1 PADYNRFLHL 10
P +YNRF+ L
Sbjct: 108 PRNYNRFVGL 117


>sp|HPRT_METLA|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanobacterium lacus (strain AL-21)

Query: 2 ADYNRFLH 9
DYN F+H
Sbjct: 18 GDYNYFVH 25


>sp|SYM_PYRAE|METHIONINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PADYNRFL 8
PADY RF+
Sbjct: 352 PADYWRFV 359


>sp|RGYR2_SULTO|REVERSE gyrase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 DYNRFLHL 10
DY++FL+L
Sbjct: 1083 DYSKFLYL 1090


>sp|HTPX1_SACS2|PROTEASE HtpX homolog 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 ADYNRFLHL 10
ADYN FL L
Sbjct: 219 ADYNSFLVL 227


>sp|SYM_THEPD|METHIONINE--TRNA ligase|Thermofilum pendens (strain DSM 2475

Query: 1 PADYNRFL 8
PADY RF+
Sbjct: 357 PADYWRFV 364


>sp|HBCAL_NITMS|4-HYDROXYBUTYRATE--COA ligase [ADP-forming]|Nitrosopumilus maritimus (strain SCM1)

Query: 2 ADYNRF 7
AD+NRF
Sbjct: 357 ADFNRF 362


>sp|ARCE_THEKO|ARGININE synthetase ArcE|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PADYNRFLHL 10
P D RF++L
Sbjct: 404 PVDLRRFMNL 413


>sp|RS8_SULAC|SMALL ribosomal subunit protein uS8|Sulfolobus acidocaldarius (strain

Query: 1 PADYNRFLHL 10
P DYN L L
Sbjct: 80 PLDYNGLLRL 89


>sp|GLMS_SULAC|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Sulfolobus acidocaldarius (strain

Query: 1 PADYNRFLHL 10
P DYN H+
Sbjct: 83 PTDYNAHPHV 92


>sp|MALA_HALJT|ALPHA-AMYLASE MalA|Haloarcula japonica (strain ATCC 49778

Query: 2 ADYNRFLH 9
ADY RF+
Sbjct: 316 ADYERFIE 323


>sp|Y2001_METTM|UNCHARACTERIZED protein MTBMA_p00010|Methanothermobacter marburgensis (strain ATCC

Query: 4 YNRFLHL 10
YN +LHL
Sbjct: 363 YNPYLHL 369




121|SequenceR|610|601|ERVTEPADYN

>sp|SYY_METTH|TYROSINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 ERVTEPADYN 10
ER+ E ADYN
Sbjct: 81 ERIRELADYN 90


>sp|CSA2B_SACS2|CRISPR-ASSOCIATED aCascade subunit Cas7/Csa2 2|Saccharolobus solfataricus (strain

Query: 1 ERVTEPADYN 10
E + EP DYN
Sbjct: 93 EGIKEPKDYN 102


>sp|SYH_PYRNV|HISTIDINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 ERVTEPADY 9
ERV +P DY
Sbjct: 327 ERVEKPLDY 335


>sp|HMGCS_METAR|HYDROXYMETHYLGLUTARYL-COA synthase|Methanocella arvoryzae (strain DSM 22066

Query: 4 TEPADYN 10
T+P+DYN
Sbjct: 223 TKPSDYN 229


>sp|AROD_METKA|3-DEHYDROQUINATE dehydratase|Methanopyrus kandleri (strain AV19 /

Query: 1 ERVTEPADY 9
ERV+ ADY
Sbjct: 82 ERVSSEADY 90


>sp|HDRB1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B1|Methanococcus

Query: 1 ERVTEPADYN 10
ERV P D N
Sbjct: 142 ERVERPLDIN 151


>sp|LYSY_CENSY|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 RVTEPADY 9
R+ +PADY
Sbjct: 102 RLHDPADY 109


>sp|PT1_HALVD|PHOSPHOENOLPYRUVATE-PROTEIN phosphotransferase|Haloferax volcanii (strain ATCC 29605

Query: 1 ERVTEPADY 9
ERV+E DY
Sbjct: 464 ERVSELGDY 472




122|SequenceR|615|606|QNFRPERVTE

>sp|RADA_METMA|DNA repair and recombination protein|Methanosarcina mazei (strain ATCC

Query: 3 FRPERVTE 10
FRPER+T+
Sbjct: 146 FRPERITQ 153


>sp|RADA_METAC|DNA repair and recombination protein|Methanosarcina acetivorans (strain

Query: 3 FRPERVTE 10
FRPER+T+
Sbjct: 146 FRPERITQ 153


>sp|RADA_METM7|DNA repair and recombination protein|Methanococcus maripaludis (strain

Query: 3 FRPERVTE 10
FRPERV +
Sbjct: 154 FRPERVVQ 161


>sp|RADA_METM6|DNA repair and recombination protein|Methanococcus maripaludis (strain

Query: 3 FRPERVTE 10
FRPERV +
Sbjct: 154 FRPERVVQ 161


>sp|RADA_METMI|DNA repair and recombination protein|Methanococcus maripaludis

Query: 3 FRPERVTE 10
FRPERV +
Sbjct: 154 FRPERVVQ 161


>sp|RADA_METMP|DNA repair and recombination protein|Methanococcus maripaludis (strain

Query: 3 FRPERVTE 10
FRPERV +
Sbjct: 154 FRPERVVQ 161


>sp|RISC_METTM|RIBOFLAVIN synthase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 3 FRPERVT 9
FRPER+T
Sbjct: 130 FRPERLT 136


>sp|GPMI_HALWD|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 NFRPERVTE 10
NFRP+RV +
Sbjct: 251 NFRPDRVRQ 259


>sp|RADA_METM5|DNA repair and recombination protein|Methanococcus maripaludis (strain

Query: 3 FRPERVTE 10
FRPERV +
Sbjct: 154 FRPERVVQ 161


>sp|RADA_METJA|DNA repair and recombination protein|Methanocaldococcus jannaschii

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 184 FRPERIVQ 191


>sp|RADA_PYRHO|DNA repair and recombination protein|Pyrococcus horikoshii (strain ATCC

Query: 3 FRPERVTE 10
FRPER+ E
Sbjct: 357 FRPERIRE 364


>sp|RADA_PYRAB|DNA repair and recombination protein|Pyrococcus abyssi (strain GE5 /

Query: 3 FRPERVTE 10
FRPER+ E
Sbjct: 181 FRPERIRE 188


>sp|RADA_METBU|DNA repair and recombination protein|Methanococcoides burtonii (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 146 FRPERIAQ 153


>sp|RADA_PYRFU|DNA repair and recombination protein|Pyrococcus furiosus (strain ATCC

Query: 3 FRPERVTE 10
FRPER+ E
Sbjct: 177 FRPERIRE 184


>sp|RADA_METVO|DNA repair and recombination protein|Methanococcus voltae

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 154 FRPERIMQ 161


>sp|RADA_METLZ|DNA repair and recombination protein|Methanocorpusculum labreanum

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 146 FRPERIEQ 153


>sp|NADC_METJA|PROBABLE nicotinate-nucleotide pyrophosphorylase

Query: 2 NFRPERVTE 10
NF+PE + E
Sbjct: 213 NFKPEEIEE 221


>sp|SYL_PYRAR|LEUCINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 QNFRPERVTE 10
N RPE++TE
Sbjct: 543 HNLRPEQLTE 552


>sp|RADA_METBF|DNA repair and recombination protein|Methanosarcina barkeri (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 146 FRPERIAQ 153


>sp|PYRF_METBF|OROTIDINE 5'-phosphate decarboxylase|Methanosarcina barkeri (strain Fusaro /

Query: 4 RPERVT 9
RPERVT
Sbjct: 150 RPERVT 155


>sp|RADA_HALVD|DNA repair and recombination protein|Haloferax volcanii (strain ATCC

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 146 FRPERIDD 153


>sp|GPMI2_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanosarcina acetivorans (strain ATCC

Query: 2 NFRPERVTE 10
NFRP+R +
Sbjct: 268 NFRPDRARQ 276


>sp|RADA_CENSY|DNA repair and recombination protein|Cenarchaeum symbiosum (strain A)

Query: 3 FRPERV 8
FRPERV
Sbjct: 153 FRPERV 158


>sp|TOP1_THEAC|DNA topoisomerase 1|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 QNFRPER 7
Q+FRPER
Sbjct: 214 QSFRPER 220


>sp|COSB_HALS3|CHEMOTACTIC signal transduction system substrate-binding|Halobacterium

Query: 3 FRPERVT 9
F PERVT
Sbjct: 213 FDPERVT 219


>sp|GPMI1_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 1|Methanosarcina barkeri (strain Fusaro /

Query: 2 NFRPERVTE 10
NFRP+R +
Sbjct: 265 NFRPDRARQ 273


>sp|TFE_METTH|TRANSCRIPTION factor E|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 FRPERVTE 10
F PE+VTE
Sbjct: 83 FEPEKVTE 90


>sp|RADA_METMJ|DNA repair and recombination protein|Methanoculleus marisnigri (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 146 FRPERIEQ 153


>sp|GPMI_METMA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 NFRPERVTE 10
NFRP+R +
Sbjct: 268 NFRPDRARQ 276


>sp|RADA_PICTO|DNA repair and recombination protein|Picrophilus torridus (strain ATCC

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 153 FRPERIIQ 160


>sp|RADA_HALWD|DNA repair and recombination protein|Haloquadratum walsbyi (strain DSM

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 146 FRPERIDD 153


>sp|RADA_PYRNV|DNA repair and recombination protein|Pyrobaculum neutrophilum (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 163 FRPERIMQ 170


>sp|TRPA_ARCFU|TRYPTOPHAN synthase alpha chain|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 QNFRPERVTE 10
+NFR ERV E
Sbjct: 60 RNFRVERVFE 69


>sp|RADA_PYRIL|DNA repair and recombination protein|Pyrobaculum islandicum (strain DSM

Query: 2 NFRPERVTE 10
FRPER+ +
Sbjct: 162 TFRPERIMQ 170


>sp|RADA_NANEQ|DNA repair and recombination protein|Nanoarchaeum equitans (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 153 FRPERIKQ 160


>sp|RADA_METS3|DNA repair and recombination protein|Methanobrevibacter smithii (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 143 FRPERIEQ 150


>sp|Y670_METJA|UNCHARACTERIZED protein MJ0670|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 NFRPERVTE 10
NF+P R+ E
Sbjct: 255 NFKPNRINE 263


>sp|RADA_THEAC|DNA repair and recombination protein|Thermoplasma acidophilum (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 154 FRPERIIQ 161


>sp|RADA_METST|DNA repair and recombination protein|Methanosphaera stadtmanae (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 143 FRPERIEQ 150


>sp|TOP1_ARCFU|DNA topoisomerase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 QNFRPERVTE 10
QNF+PE+ E
Sbjct: 213 QNFKPEKYYE 222


>sp|RADA_PYRAR|DNA repair and recombination protein|Pyrobaculum arsenaticum (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 166 FRPERIMQ 173


>sp|RADA_PYRCJ|DNA repair and recombination protein|Pyrobaculum calidifontis (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 165 FRPERIMQ 172


>sp|NADC_ARCFU|PROBABLE nicotinate-nucleotide pyrophosphorylase

Query: 2 NFRPERVTE 10
NF PE V E
Sbjct: 192 NFTPEMVAE 200


>sp|RADA_THEVO|DNA repair and recombination protein|Thermoplasma volcanium (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 154 FRPERIIQ 161


>sp|RADA_METTH|DNA repair and recombination protein|Methanothermobacter

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 143 FRPERIEQ 150


>sp|RADA_PYRAE|DNA repair and recombination protein|Pyrobaculum aerophilum (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 166 FRPERIMQ 173


>sp|RADA_HALSA|DNA repair and recombination protein|Halobacterium salinarum (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 146 FRPERIDD 153


>sp|RADA_HALS3|DNA repair and recombination protein|Halobacterium salinarum (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 146 FRPERIDD 153


>sp|RADA_ARCFU|DNA repair and recombination protein|Archaeoglobus fulgidus (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 154 FRPERIIQ 161


>sp|RADA_THEKO|DNA repair and recombination protein|Thermococcus kodakarensis (strain

Query: 3 FRPERVTE 10
FRPER+ +
Sbjct: 664 FRPERIKQ 671


>sp|GPMI_METBU|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcoides burtonii (strain DSM 6242

Query: 2 NFRPERVTE 10
NFRP+R +
Sbjct: 262 NFRPDRARQ 270


>sp|ENCP1_PYRFU|FERRITIN-LIKE-ENCAPSULIN shell fusion protein|Pyrococcus furiosus (strain ATCC 43587

Query: 2 NFRPERVTE 10
N PE+VTE
Sbjct: 74 NLDPEQVTE 82


>sp|MRE11_ARCFU|DNA double-strand break repair protein|Archaeoglobus fulgidus (strain

Query: 1 QNFRPERV 8
+NFRPE V
Sbjct: 253 KNFRPEFV 260


>sp|RL22_PYRHO|LARGE ribosomal subunit protein uL22|Pyrococcus horikoshii (strain ATCC

Query: 1 QNFRPERV 8
QNF PER+
Sbjct: 10 QNFDPERM 17


>sp|RL22_THEKO|LARGE ribosomal subunit protein uL22|Thermococcus kodakarensis (strain

Query: 1 QNFRPERV 8
QNF PER+
Sbjct: 11 QNFDPERM 18


>sp|RL22_PYRAB|LARGE ribosomal subunit protein uL22|Pyrococcus abyssi (strain GE5 /

Query: 1 QNFRPERV 8
QNF PER+
Sbjct: 10 QNFDPERM 17


>sp|KAE1B_HALMA|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 NFRPERV 8
NFRP+ V
Sbjct: 328 NFRPDEV 334




123|SequenceR|620|611|RLNVNQNFRP

>sp|IF2P_METMJ|PROBABLE translation initiation factor IF-2|Methanoculleus marisnigri

Query: 2 LNVNQNFRP 10
+++N+ FRP
Sbjct: 102 VDINEGFRP 110


>sp|ARGC_METAR|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanocella arvoryzae (strain DSM 22066

Query: 3 NVNQNFRP 10
NV QN RP
Sbjct: 189 NVTQNVRP 196


>sp|IF2P_METS3|PROBABLE translation initiation factor IF-2|Methanobrevibacter smithii

Query: 2 LNVNQNFRP 10
L+VN F+P
Sbjct: 101 LDVNDGFKP 109


>sp|CBIA_PICTO|COBYRINATE a,c-diamide synthase|Picrophilus torridus (strain ATCC 700027

Query: 1 RLNVNQN 7
RLNVN N
Sbjct: 392 RLNVNAN 398


>sp|YPZ4_METTF|UNCHARACTERIZED protein ORF4'|Methanothermobacter thermautotrophicus

Query: 2 LNVNQNFR 9
+NVN NFR
Sbjct: 166 INVNFNFR 173


>sp|YPV4_METTF|UNCHARACTERIZED protein ORF4|Methanothermobacter thermautotrophicus

Query: 2 LNVNQNFR 9
+NVN NFR
Sbjct: 169 INVNFNFR 176


>sp|RIBL_METPE|FAD synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 LNVNQNFRP 10
L NQNF P
Sbjct: 89 LGFNQNFDP 97


>sp|PYRH_THEAC|URIDYLATE kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 RLNVNQN 7
+LNVN+N
Sbjct: 58 KLNVNEN 64




124|SequenceR|625|616|PQAPPRLNVN

>sp|Y296_METJA|PROBABLE metallo-hydrolase MJ0296|Methanocaldococcus jannaschii (strain ATCC

Query: 4 PPRLNVN 10
PP+LNV+
Sbjct: 165 PPKLNVD 171


>sp|GYAR_THELN|GLYOXYLATE reductase|Thermococcus litoralis (strain ATCC 51850

Query: 1 PQAPPR 6
P+APPR
Sbjct: 31 PKAPPR 36




125|SequenceR|630|621|VLQDSPQAPP

>sp|COXX1_NATPD|PROTOHEME IX farnesyltransferase 1|Natronomonas pharaonis (strain ATCC 35678

Query: 4 DSPQAPP 10
D+P++PP
Sbjct: 141 DAPESPP 147


>sp|PYLC_METMA|3-METHYL-D-ORNITHINE--L-LYSINE ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 QDSPQAPP 10
QD P PP
Sbjct: 128 QDKPSEPP 135


>sp|RTCA_CALMQ|RNA 3'-terminal phosphate cyclase|Caldivirga maquilingensis (strain

Query: 4 DSPQAPP 10
D P+APP
Sbjct: 123 DVPKAPP 129


>sp|PYLC_METBF|3-METHYL-D-ORNITHINE--L-LYSINE ligase|Methanosarcina barkeri (strain Fusaro /

Query: 3 QDSPQAPP 10
QD P PP
Sbjct: 120 QDRPSKPP 127




126|SequenceR|635|626|RAARWVLQDS

>sp|DAPB_METB6|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanoregula boonei (strain DSM 21154

Query: 1 RAARWVL 7
RAARWV+
Sbjct: 231 RAARWVV 237


>sp|DAPB_METMJ|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 RAARWVL 7
RAARWV+
Sbjct: 231 RAARWVV 237


>sp|ORNAT_THEKO|ORNITHINE aminotransferase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 AARWVLQD 9
A++WV QD
Sbjct: 163 ASKWVQQD 170


>sp|SYFB_METS5|PHENYLALANINE--TRNA ligase beta subunit|Metallosphaera sedula (strain ATCC 51363

Query: 4 RWVLQD 9
+W+LQD
Sbjct: 8 KWILQD 13


>sp|SYV_SULTO|VALINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 RWVLQD 9
RW+LQ+
Sbjct: 626 RWILQE 631




127|SequenceR|640|631|AAGSSRAARW

>sp|KORB_METTM|2-OXOGLUTARATE synthase subunit KorB|Methanothermobacter marburgensis (strain ATCC

Query: 1 AAGSSRAARW 10
AAG+S ARW
Sbjct: 166 AAGASYVARW 175


>sp|KORB_METTH|2-OXOGLUTARATE synthase subunit KorB|Methanothermobacter thermautotrophicus

Query: 1 AAGSSRAARW 10
AAG+S ARW
Sbjct: 166 AAGASYVARW 175


>sp|KORB_METJA|2-OXOGLUTARATE synthase subunit KorB|Methanocaldococcus jannaschii (strain ATCC

Query: 1 AAGSSRAARW 10
AAG++ ARW
Sbjct: 162 AAGATYVARW 171


>sp|DAPB_METB6|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanoregula boonei (strain DSM 21154

Query: 1 AAGSSRAARW 10
A+G+ RAARW
Sbjct: 226 ASGALRAARW 235


>sp|CSG_METSC|CELL surface glycoprotein|Methanothermus sociabilis

Query: 1 AAGSSRAARW 10
+AG S+ RW
Sbjct: 414 SAGESQIVRW 423


>sp|CSG_METFV|CELL surface glycoprotein|Methanothermus fervidus (strain ATCC 43054

Query: 1 AAGSSRAARW 10
+AG S+ RW
Sbjct: 414 SAGESQIVRW 423




128|SequenceR|645|636|RFYTPAAGSS

>sp|CSG_METMA|MAJOR S-layer protein|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 FYTPAAGSS 10
FY PAAG S
Sbjct: 107 FYRPAAGWS 115


>sp|MUTS_HALWD|DNA mismatch repair protein MutS|Haloquadratum walsbyi (strain DSM

Query: 1 RFYTPA 6
RFYTPA
Sbjct: 537 RFYTPA 542


>sp|HEM3_METTH|PROBABLE porphobilinogen deaminase|Methanothermobacter thermautotrophicus

Query: 2 FYTPAAG 8
++TPAAG
Sbjct: 183 YFTPAAG 189


>sp|MUTS_METBU|DNA mismatch repair protein MutS|Methanococcoides burtonii (strain DSM

Query: 1 RFYTP 5
RFYTP
Sbjct: 511 RFYTP 515


>sp|Y1747_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 2 FYTPAAG 8
FY PA+G
Sbjct: 368 FYRPASG 374


>sp|PIMT_METJA|PROTEIN-L-ISOASPARTATE O-methyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 RFYTPAAG 8
R YT AAG
Sbjct: 149 RIYTTAAG 156


>sp|MUTS2_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 1 RFYTPA 6
R+YTPA
Sbjct: 528 RYYTPA 533


>sp|MUTS_NATPD|DNA mismatch repair protein MutS|Natronomonas pharaonis (strain ATCC

Query: 1 RFYTP 5
RFYTP
Sbjct: 511 RFYTP 515


>sp|NNRD_NATMM|ADP-DEPENDENT (S)-NAD(P)H-hydrate dehydratase|Natrialba magadii (strain ATCC

Query: 2 FYTPAAGSS 10
Y P AGSS
Sbjct: 58 LYAPVAGSS 66


>sp|FLAB1_METVS|FLAGELLIN B1|Methanococcus vannielii (strain ATCC 35089

Query: 2 FYTPAAGSS 10
+ TP AGSS
Sbjct: 85 YVTPNAGSS 93


>sp|Y1560_METJA|UNCHARACTERIZED MFS-type transporter MJ1560|Methanocaldococcus jannaschii (strain

Query: 2 FYTPAAGS 9
F TP AGS
Sbjct: 110 FVTPVAGS 117


>sp|RL15_PYRNV|LARGE ribosomal subunit protein uL15|Pyrobaculum neutrophilum (strain DSM

Query: 3 YTPAAGSS 10
YTPAA S
Sbjct: 129 YTPAASRS 136


>sp|BAST_HALS3|TRANSDUCER protein BasT|Halobacterium salinarum (strain ATCC 29341

Query: 3 YTPAAGS 9
YTP AG+
Sbjct: 267 YTPVAGT 273




129|SequenceR|650|641|FRGNPRFYTP

>sp|GLNA_METJA|GLUTAMINE synthetase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FRGNPRFYTP 10
F G P FY P
Sbjct: 262 FNGEPSFYDP 271


>sp|TMBL1_PYRFU|HTH-TYPE sugar sensing transcriptional regulator|Pyrococcus furiosus

Query: 3 GNPRFYTP 10
G PR Y P
Sbjct: 66 GTPRLYAP 73


>sp|ASOR_PYRFU|ALIPHATIC sulfonate oxidoreductase, WOR-like subunit|Pyrococcus furiosus

Query: 5 PRFYTP 10
PRFY P
Sbjct: 558 PRFYEP 563


>sp|OGT_PYRFU|METHYLATED-DNA--PROTEIN-CYSTEINE methyltransferase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 RGNPRFYTP 10
R NP YTP
Sbjct: 150 RKNPYLYTP 158


>sp|ENDA_AERPE|TRNA-SPLICING endonuclease|Aeropyrum pernix (strain ATCC 700893

Query: 2 RGNPRF 7
RGNPRF
Sbjct: 90 RGNPRF 95


>sp|HIS7_NATPD|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 GNPRFY 8
G PRFY
Sbjct: 113 GRPRFY 118


>sp|TREH1_SULAC|TREHALASE 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 RGNPRFYT 9
RG+P+ YT
Sbjct: 376 RGDPKHYT 383


>sp|T1R1_METJA|PUTATIVE type I restriction enzyme|Methanocaldococcus jannaschii (strain

Query: 1 FRGNPRFYTP 10
F+GNP+ P
Sbjct: 41 FKGNPKNSRP 50


>sp|OGT_PYRHO|METHYLATED-DNA--PROTEIN-CYSTEINE methyltransferase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 RGNPRFYTP 10
+ NP YTP
Sbjct: 148 KNNPWLYTP 156


>sp|Y1412_METJA|UPF0288 protein MJ1412|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FRGNPRF 7
F+GNP +
Sbjct: 412 FKGNPEY 418


>sp|RL24_HYPBU|LARGE ribosomal subunit protein uL24|Hyperthermus butylicus (strain DSM

Query: 2 RGNPRFY 8
RG PR+Y
Sbjct: 88 RGEPRYY 94


>sp|Y3544_METJA|UNCHARACTERIZED protein MJECL44|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 RGNPRF 7
RGNP F
Sbjct: 210 RGNPNF 215


>sp|SLAB_SACS2|S-LAYER protein B|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 GNPRFYTP 10
GN FY+P
Sbjct: 29 GNVTFYSP 36


>sp|SYFB_METKA|PHENYLALANINE--TRNA ligase beta subunit|Methanopyrus kandleri (strain AV19 /

Query: 5 PRFYTP 10
P FYTP
Sbjct: 385 PDFYTP 390


>sp|FWDD_METJA|PROTEIN FwdD|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FRGNPRFY 8
F+G P FY
Sbjct: 100 FKGYPGFY 107


>sp|GLNA1_METMA|GLUTAMINE synthetase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 FRGNPRF 7
F+G+PR+
Sbjct: 108 FKGDPRY 114


>sp|Y772_ARCFU|UNCHARACTERIZED protein AF_0772|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 FRGNP 5
FRGNP
Sbjct: 31 FRGNP 35


>sp|ENDA_PICTO|TRNA-SPLICING endonuclease|Picrophilus torridus (strain ATCC 700027

Query: 1 FRGNPRFY 8
F GN +FY
Sbjct: 59 FNGNIKFY 66


>sp|RL2_NANEQ|LARGE ribosomal subunit protein uL2|Nanoarchaeum equitans (strain

Query: 2 RGNPRFYTP 10
RG+P F +P
Sbjct: 13 RGSPTFRSP 21




130|SequenceR|655|646|LGGDLFRGNP

>sp|DABA_HALWD|PROBABLE inorganic carbon transporter subunit|Haloquadratum walsbyi (strain

Query: 2 GGDLFRGNP 10
GGDL RG P
Sbjct: 825 GGDLMRGLP 833


>sp|KCY_HALSA|CYTIDYLATE kinase|Halobacterium salinarum (strain ATCC 700922

Query: 2 GGDLFRG 8
GGD+FRG
Sbjct: 31 GGDIFRG 37


>sp|KCY_HALS3|CYTIDYLATE kinase|Halobacterium salinarum (strain ATCC 29341

Query: 2 GGDLFRG 8
GGD+FRG
Sbjct: 31 GGDIFRG 37


>sp|MCT_HALMA|SUCCINYL-COA:MESACONATE CoA-transferase|Haloarcula marismortui (strain ATCC 43049

Query: 2 GGDLFRGNP 10
GGDL R NP
Sbjct: 39 GGDLIRSNP 47


>sp|MCT_HALHT|SUCCINYL-COA:MESACONATE CoA-transferase|Haloarcula hispanica (strain ATCC 33960

Query: 2 GGDLFRGNP 10
GGDL R NP
Sbjct: 39 GGDLIRSNP 47


>sp|Y1094_METJA|UNCHARACTERIZED protein MJ1094|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GDLFRGN 9
G LFRGN
Sbjct: 147 GKLFRGN 153


>sp|METXA_METBU|HOMOSERINE O-acetyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 2 GGDLFRGNP 10
GGD + G P
Sbjct: 205 GGDYYEGEP 213


>sp|THSB_SACSH|CHAPERONIN subunit beta|Saccharolobus shibatae (strain ATCC 51178

Query: 2 GGDLFRGNP 10
G +LF GNP
Sbjct: 485 GLNLFTGNP 493


>sp|THSB_SACS2|CHAPERONIN subunit beta|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GGDLFRGNP 10
G +LF GNP
Sbjct: 485 GLNLFTGNP 493


>sp|KCY_HALWD|CYTIDYLATE kinase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 GGDLFR 7
GGD+FR
Sbjct: 31 GGDIFR 36


>sp|KCY_METBU|CYTIDYLATE kinase|Methanococcoides burtonii (strain DSM 6242

Query: 2 GGDLFRG 8
GD+FRG
Sbjct: 31 AGDVFRG 37


>sp|KCY_HALMA|CYTIDYLATE kinase|Haloarcula marismortui (strain ATCC 43049

Query: 2 GGDLFR 7
GGD+FR
Sbjct: 31 GGDIFR 36


>sp|ILVD_METJA|DIHYDROXY-ACID dehydratase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LGGDLFRGN 9
LGGD+ RG+
Sbjct: 416 LGGDIERGD 424


>sp|XACK_HALVD|XYLOSE/ARABINOSE import ATP-binding protein XacK|Haloferax volcanii (strain ATCC

Query: 1 LGGDLFRGN 9
L GD FRG+
Sbjct: 252 LSGDTFRGD 260


>sp|KCY_HALLT|CYTIDYLATE kinase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 GGDLFR 7
GGD+FR
Sbjct: 31 GGDIFR 36


>sp|AROB_THEAC|3-DEHYDROQUINATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 GGDLFR 7
GGD+FR
Sbjct: 191 GGDMFR 196


>sp|THS_DESSY|THERMOSOME subunit|Desulfurococcus sp. (strain SY)

Query: 1 LGGDLFRGNP 10
+G D+F G P
Sbjct: 477 IGVDVFEGEP 486


>sp|THSB_THEKO|CHAPERONIN subunit beta|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 LGGDLFRGNP 10
+G D+F G P
Sbjct: 477 IGVDVFEGEP 486


>sp|THSB_THEK8|CHAPERONIN subunit beta|Thermococcus sp. (strain KS-8)

Query: 1 LGGDLFRGNP 10
+G D+F G P
Sbjct: 477 IGVDVFEGEP 486


>sp|THSB_THEK1|CHAPERONIN subunit beta|Thermococcus sp. (strain JCM 11816

Query: 1 LGGDLFRGNP 10
+G D+F G P
Sbjct: 477 IGVDVFEGEP 486


>sp|Y773_METJA|UNCHARACTERIZED protein MJ0773|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GDLFRGN 9
GD+FR N
Sbjct: 138 GDVFRSN 144


>sp|KCY_NATPD|CYTIDYLATE kinase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 GGDLFR 7
GGD+FR
Sbjct: 31 GGDIFR 36


>sp|ENO_PYRHO|ENOLASE horikoshii (strain ATCC 700860

Query: 1 LGGDLFRGNP 10
+G DLF NP
Sbjct: 311 VGDDLFVTNP 320


>sp|Y772_ARCFU|UNCHARACTERIZED protein AF_0772|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 DLFRGNP 10
++FRGNP
Sbjct: 29 NVFRGNP 35


>sp|THSA_THEKO|CHAPERONIN subunit alpha|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 LGGDLFRGNP 10
+G D+F G P
Sbjct: 477 IGIDVFEGKP 486


>sp|THSA_THEK1|CHAPERONIN subunit alpha|Thermococcus sp. (strain JCM 11816

Query: 1 LGGDLFRGNP 10
+G D+F G P
Sbjct: 477 IGIDVFEGKP 486


>sp|ENO_PYRAB|ENOLASE abyssi (strain GE5 /

Query: 1 LGGDLFRGNP 10
+G DLF NP
Sbjct: 311 VGDDLFVTNP 320


>sp|PYRH_THEAC|URIDYLATE kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 LGGDLFRGNP 10
LGG + G+P
Sbjct: 9 LGGSVISGDP 18


>sp|ENO_PYRFU|ENOLASE furiosus (strain ATCC 43587

Query: 1 LGGDLFRGNP 10
+G DLF NP
Sbjct: 313 VGDDLFVTNP 322


>sp|ENO_THEON|ENOLASE onnurineus (strain NA1)

Query: 1 LGGDLFRGNP 10
+G DLF NP
Sbjct: 313 VGDDLFVTNP 322


>sp|PYRH_THEVO|URIDYLATE kinase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 LGGDLFRGNP 10
LGG + G+P
Sbjct: 9 LGGSVISGDP 18


>sp|MFNA_METVS|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcus vannielii

Query: 2 GGDLFRGN 9
GG LFR N
Sbjct: 242 GGILFRNN 249


>sp|ENO_THEKO|ENOLASE kodakarensis (strain ATCC BAA-918

Query: 1 LGGDLFRGNP 10
+G DLF NP
Sbjct: 313 VGDDLFVTNP 322


>sp|ENO_PYRAE|ENOLASE aerophilum (strain ATCC 51768

Query: 1 LGGDLFRGNP 10
+G DLF NP
Sbjct: 307 VGDDLFVTNP 316


>sp|ENO_THEGJ|ENOLASE gammatolerans (strain DSM 15229

Query: 1 LGGDLFRGNP 10
+G DLF NP
Sbjct: 313 VGDDLFVTNP 322


>sp|RNP1_IGNH4|RIBONUCLEASE P protein component 1|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 GDLFRGNP 10
G+L RG P
Sbjct: 75 GELLRGRP 82


>sp|ENO_METKA|ENOLASE kandleri (strain AV19 /

Query: 1 LGGDLFRGNP 10
+G DLF NP
Sbjct: 311 VGDDLFVTNP 320




131|SequenceR|660|651|PNNALLGGDL

>sp|CIMA_METMA|PUTATIVE (R)-citramalate synthase CimA|Methanosarcina mazei (strain ATCC

Query: 1 PNNALLGGD 9
PN AL+GG+
Sbjct: 261 PNKALVGGN 269


>sp|CIMA_METAC|PUTATIVE (R)-citramalate synthase CimA|Methanosarcina acetivorans (strain

Query: 1 PNNALLGGD 9
PN AL+GG+
Sbjct: 261 PNKALVGGN 269


>sp|TDXH_HYPBU|PEROXIREDOXIN butylicus (strain DSM 5456

Query: 1 PNNALLGGDL 10
PNN L+G +L
Sbjct: 174 PNNELIGDNL 183


>sp|SLAA_ACIAM|S-LAYER protein A|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 1 PNNALLGGDL 10
PN+ LGGD+
Sbjct: 469 PNSTGLGGDM 478


>sp|LEU1_PYRAB|2-ISOPROPYLMALATE synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 PNNALLGGD 9
PN A++GG+
Sbjct: 282 PNKAIVGGN 290


>sp|ATGT_METST|TRNA-GUANINE(15) transglycosylase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 NALLGGD 9
NAL GGD
Sbjct: 537 NALFGGD 543


>sp|Y1614_METAC|MACRO domain-containing protein MA_1614|Methanosarcina acetivorans

Query: 2 NNALLGG 8
NN LLGG
Sbjct: 49 NNTLLGG 55


>sp|DTDA_METPE|D-AMINOACYL-TRNA deacylase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 PNNALLGGD 9
P ALLGG+
Sbjct: 84 PGEALLGGE 92


>sp|Y177_METMA|MACRO domain-containing protein MM_0177|Methanosarcina mazei (strain

Query: 2 NNALLGG 8
NN LLGG
Sbjct: 41 NNTLLGG 47


>sp|LONB_METTH|ARCHAEAL Lon protease|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 PNNALLGG 8
PNN L+G
Sbjct: 105 PNNPLIGA 112


>sp|AGLE_HALVD|GLYCOSYLTRANSFERASE AglE|Haloferax volcanii (strain ATCC 29605

Query: 1 PNNALLGGDL 10
PN+ + GGD+
Sbjct: 176 PNHLISGGDV 185


>sp|TDXH_THEKO|PEROXIREDOXIN kodakarensis (strain ATCC BAA-918

Query: 1 PNNALLG 7
PNN L+G
Sbjct: 171 PNNELIG 177


>sp|TDXH_STAMF|PEROXIREDOXIN marinus (strain ATCC 43588

Query: 1 PNNALLG 7
PNN L+G
Sbjct: 174 PNNELIG 180


>sp|TDXH_SACS2|PEROXIREDOXIN solfataricus (strain ATCC 35092

Query: 1 PNNALLG 7
PNN L+G
Sbjct: 175 PNNELIG 181


>sp|TDXH_PYRHO|PEROXIREDOXIN horikoshii (strain ATCC 700860

Query: 1 PNNALLG 7
PNN L+G
Sbjct: 171 PNNELIG 177


>sp|TDXH_PYRFU|PEROXIREDOXIN furiosus (strain ATCC 43587

Query: 1 PNNALLG 7
PNN L+G
Sbjct: 171 PNNELIG 177


>sp|TDXH_PYRAB|PEROXIREDOXIN abyssi (strain GE5 /

Query: 1 PNNALLG 7
PNN L+G
Sbjct: 171 PNNELIG 177


>sp|TDXH2_SULTO|PEROXIREDOXIN 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 PNNALLG 7
PNN L+G
Sbjct: 175 PNNELIG 181


>sp|DNAG_ARCFU|DNA primase DnaG|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 ALLGGDL 10
LLGGDL
Sbjct: 47 GLLGGDL 53


>sp|DAPF_METMP|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain DSM 14266

Query: 5 LLGGDL 10
LLGGDL
Sbjct: 245 LLGGDL 250


>sp|DAPF_METM7|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain C7 /

Query: 5 LLGGDL 10
LLGGDL
Sbjct: 245 LLGGDL 250


>sp|DAPF_METM6|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain C6 /

Query: 5 LLGGDL 10
LLGGDL
Sbjct: 245 LLGGDL 250


>sp|DAPF_METM5|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain C5 /

Query: 5 LLGGDL 10
LLGGDL
Sbjct: 245 LLGGDL 250


>sp|MRE11_NANEQ|DNA double-strand break repair protein|Nanoarchaeum equitans (strain

Query: 1 PNNALLGGDL 10
P+ L+GGD+
Sbjct: 40 PDLVLVGGDI 49


>sp|DAPB_METST|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 PNNALLGGDL 10
PN+ L G DL
Sbjct: 36 PNSPLAGNDL 45


>sp|ARGJ_METVS|GLUTAMATE N-acetyltransferase|Methanococcus vannielii (strain ATCC 35089

Query: 2 NNALLGGDL 10
NNA++ GD+
Sbjct: 218 NNAVVDGDM 226


>sp|ARGJ_METM5|GLUTAMATE N-acetyltransferase|Methanococcus maripaludis (strain C5 /

Query: 2 NNALLGGDL 10
NNA++ GD+
Sbjct: 218 NNAVVDGDM 226


>sp|ARGJ_METMP|GLUTAMATE N-acetyltransferase|Methanococcus maripaludis (strain DSM 14266

Query: 2 NNALLGGDL 10
NNA++ GD+
Sbjct: 218 NNAVVDGDM 226


>sp|ARGJ_METM7|GLUTAMATE N-acetyltransferase|Methanococcus maripaludis (strain C7 /

Query: 2 NNALLGGDL 10
NNA++ GD+
Sbjct: 218 NNAVVDGDM 226


>sp|Y1396_METJA|UNCHARACTERIZED protein MJ1396|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 NNALLGGDL 10
NN+LLG DL
Sbjct: 2650 NNSLLGIDL 2658


>sp|ARGJ_METM6|GLUTAMATE N-acetyltransferase|Methanococcus maripaludis (strain C6 /

Query: 2 NNALLGGDL 10
NNA++ GD+
Sbjct: 218 NNAVVDGDM 226


>sp|ILVD_METJA|DIHYDROXY-ACID dehydratase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 NALLGGDL 10
+A+LGGD+
Sbjct: 413 DAILGGDI 420


>sp|ILVD_META3|DIHYDROXY-ACID dehydratase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 NALLGGDL 10
+A+LGGD+
Sbjct: 412 DAILGGDI 419




132|SequenceR|665|656|MADLTPNNAL

>sp|KAE1B_PICTO|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 ADLTPNNAL 10
DLTPNN +
Sbjct: 446 GDLTPNNII 454


>sp|Y934_METJA|UNCHARACTERIZED polyferredoxin-like protein MJ0934|Methanocaldococcus jannaschii

Query: 3 DLTPNNAL 10
D+ PNNA+
Sbjct: 80 DVCPNNAI 87


>sp|METXA_METEZ|HOMOSERINE O-acetyltransferase|Methanohalobium evestigatum (strain ATCC

Query: 3 DLTPNNAL 10
DLT NN+L
Sbjct: 289 DLTENNSL 296


>sp|MTRH_METVS|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit H|Methanococcus vannielii (strain

Query: 1 MADLTPNNAL 10
M D+T N+AL
Sbjct: 64 MQDITGNSAL 73




133|SequenceR|670|661|EHIETMADLT

>sp|SYH_HALMA|HISTIDINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 EHIETMADLT 10
E IET+ DLT
Sbjct: 223 EEIETLGDLT 232


>sp|ARLY_METJA|ARGININOSUCCINATE lyase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 IETMADL 9
+ETMADL
Sbjct: 236 LETMADL 242


>sp|PHSG_THELN|MALTODEXTRIN phosphorylase|Thermococcus litoralis (strain ATCC 51850

Query: 1 EHIETMADL 9
+HI+T +DL
Sbjct: 132 DHIKTASDL 140


>sp|MFNB_ARCFU|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 HIETMADLT 10
HIET+ +L+
Sbjct: 194 HIETLKELS 202


>sp|RU1PA_HALXS|RIBULOSE-1-PHOSPHATE aldolase|Halopiger xanaduensis (strain DSM 18323

Query: 1 EHIETMADLT 10
EH +ADLT
Sbjct: 12 EHASELADLT 21




134|SequenceR|675|666|LDQNYEHIET

>sp|SYT_NATPD|THREONINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 DQNYEHIET 10
DQ YE +ET
Sbjct: 287 DQGYEFVET 295


>sp|KATG_NATPD|CATALASE-PEROXIDASE pharaonis (strain ATCC 35678

Query: 1 LDQNYEHIE 9
LDQN +H++
Sbjct: 18 LDQNAQHVD 26


>sp|RBL_ARCFU|RIBULOSE bisphosphate carboxylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LDQNYEHIE 9
L QN+ HI+
Sbjct: 349 LSQNFHHIK 357


>sp|DPOL1_SACS2|DNA polymerase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 DQNYEHIET 10
D +++HIET
Sbjct: 108 DPSFDHIET 116


>sp|PGK_PYRHO|PHOSPHOGLYCERATE kinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LDQNYEHIE 9
LDQ+ E+IE
Sbjct: 80 LDQHVEYIE 88


>sp|COBQ_METMP|PROBABLE cobyric acid synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 LDQNYEHI 8
LD+NY+++
Sbjct: 122 LDKNYDYV 129


>sp|COBQ_METM6|PROBABLE cobyric acid synthase|Methanococcus maripaludis (strain C6 /

Query: 1 LDQNYEHI 8
LD+NY+++
Sbjct: 122 LDKNYDYV 129


>sp|COBQ_METM5|PROBABLE cobyric acid synthase|Methanococcus maripaludis (strain C5 /

Query: 1 LDQNYEHI 8
LD+NY+++
Sbjct: 122 LDKNYDYV 129




135|SequenceR|680|671|QGKRILDQNY

>sp|DHQS_NATPD|3-DEHYDROQUINATE synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 4 RILDQNY 10
RILDQ+Y
Sbjct: 115 RILDQDY 121


>sp|RL2_METBF|LARGE ribosomal subunit protein uL2|Methanosarcina barkeri (strain

Query: 2 GKRILDQN 9
GKRI+ QN
Sbjct: 2 GKRIISQN 9


>sp|RL2_METTP|LARGE ribosomal subunit protein uL2|Methanothrix thermoacetophila

Query: 2 GKRILDQN 9
GKRI+ QN
Sbjct: 2 GKRIISQN 9


>sp|PELO_METS3|PROTEIN pelota homolog|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 GKRILDQN 9
GKRI+D+N
Sbjct: 169 GKRIVDKN 176


>sp|ASSY_HYPBU|ARGININOSUCCINATE synthase|Hyperthermus butylicus (strain DSM 5456

Query: 3 KRILDQNY 10
KRILDQ +
Sbjct: 296 KRILDQEW 303


>sp|MEND_HALWD|2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE synthase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 GKRILDQN 9
G R+LD+N
Sbjct: 209 GNRVLDEN 216


>sp|RL2_ARCFU|LARGE ribosomal subunit protein uL2|Archaeoglobus fulgidus (strain

Query: 2 GKRILDQN 9
GKRI+ QN
Sbjct: 2 GKRIISQN 9


>sp|RL2_METAR|LARGE ribosomal subunit protein uL2|Methanocella arvoryzae (strain

Query: 2 GKRILDQN 9
GKR++ QN
Sbjct: 2 GKRLMSQN 9


>sp|RL2_METMA|LARGE ribosomal subunit protein uL2|Methanosarcina mazei (strain ATCC

Query: 2 GKRILDQN 9
GKR++ QN
Sbjct: 2 GKRLISQN 9


>sp|RL2_METAC|LARGE ribosomal subunit protein uL2|Methanosarcina acetivorans

Query: 2 GKRILDQN 9
GKR++ QN
Sbjct: 2 GKRLISQN 9


>sp|RL2_METVA|LARGE ribosomal subunit protein uL2|Methanococcus vannielii

Query: 2 GKRILDQN 9
GKR++ QN
Sbjct: 2 GKRLISQN 9


>sp|RL2_METM7|LARGE ribosomal subunit protein uL2|Methanococcus maripaludis (strain

Query: 2 GKRILDQN 9
GKR++ QN
Sbjct: 2 GKRLISQN 9


>sp|DHYS_SULTO|PROBABLE deoxyhypusine synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GKRILDQN 9
GKRI D+N
Sbjct: 167 GKRISDEN 174


>sp|RL2_METM6|LARGE ribosomal subunit protein uL2|Methanococcus maripaludis (strain

Query: 2 GKRILDQN 9
GKR++ QN
Sbjct: 2 GKRLISQN 9


>sp|RL2_METVS|LARGE ribosomal subunit protein uL2|Methanococcus vannielii (strain

Query: 2 GKRILDQN 9
GKR++ QN
Sbjct: 2 GKRLISQN 9


>sp|MPTN_METAC|TETRAHYDROMETHANOPTERIN:ALPHA-L-GLUTAMATE ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 QGKRILDQN 9
QG RIL+ N
Sbjct: 288 QGSRILEVN 296


>sp|RL2_METM5|LARGE ribosomal subunit protein uL2|Methanococcus maripaludis (strain

Query: 2 GKRILDQN 9
GKR++ QN
Sbjct: 2 GKRLISQN 9


>sp|RL2_METMP|LARGE ribosomal subunit protein uL2|Methanococcus maripaludis (strain

Query: 2 GKRILDQN 9
GKR++ QN
Sbjct: 2 GKRLISQN 9


>sp|DHYS_SACS2|PROBABLE deoxyhypusine synthase|Saccharolobus solfataricus (strain ATCC

Query: 2 GKRILDQN 9
GKRI D N
Sbjct: 168 GKRITDSN 175


>sp|DHYS_IGNH4|PROBABLE deoxyhypusine synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 GKRILDQN 9
GKR+ D+N
Sbjct: 165 GKRLSDEN 172


>sp|DHYS_SACI7|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 GKRILDQN 9
GKRI D N
Sbjct: 168 GKRISDSN 175


>sp|DHYS_SACI4|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 GKRILDQN 9
GKRI D N
Sbjct: 168 GKRISDSN 175


>sp|DHYS_SACI3|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain M.16.27)

Query: 2 GKRILDQN 9
GKRI D N
Sbjct: 168 GKRISDSN 175


>sp|DHYS_SACI2|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 GKRILDQN 9
GKRI D N
Sbjct: 168 GKRISDSN 175


>sp|DHYS_SACI1|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 GKRILDQN 9
GKRI D N
Sbjct: 168 GKRISDSN 175


>sp|COBQ_METTH|PROBABLE cobyric acid synthase|Methanothermobacter thermautotrophicus

Query: 2 GKRILD 7
GKRILD
Sbjct: 339 GKRILD 344


>sp|DHYS_SACI6|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 GKRILDQN 9
GKRI D N
Sbjct: 168 GKRISDSN 175


>sp|ENO_PICTO|ENOLASE torridus (strain ATCC 700027

Query: 1 QGKRILDQNY 10
QGK +LD Y
Sbjct: 161 QGKTVLDSIY 170




136|SequenceR|685|676|KVKNAQGKRI

>sp|DP2S_PYRAB|DNA polymerase II small subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 KVKNAQGK 8
KVKN GK
Sbjct: 212 KVKNGSGK 219


>sp|SYV_NANEQ|VALINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 KVKNAQGKRI 10
K+K +QGK++
Sbjct: 716 KLKTSQGKKL 725


>sp|DP2S_PYRFU|DNA polymerase II small subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 1 KVKNAQGK 8
KVKN GK
Sbjct: 206 KVKNGNGK 213


>sp|RS8E_METBF|SMALL ribosomal subunit protein eS8|Methanosarcina barkeri (strain

Query: 1 KVKNAQGKR 9
KV NA+GKR
Sbjct: 15 KVINARGKR 23




137|SequenceR|690|681|VISLKKVKNA

>sp|PURL_METMA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 ISLKKVKNA 10
ISL+++KNA
Sbjct: 697 ISLEEIKNA 705




138|SequenceR|695|686|TGLSVVISLK

>sp|ILVC_METPE|KETOL-ACID reductoisomerase (NADP(+))|Methanosphaerula palustris (strain

Query: 1 TGLSVVISLK 10
+GLSV+I L+
Sbjct: 39 SGLSVIIGLR 48


>sp|ILVC_NITMS|KETOL-ACID reductoisomerase (NADP(+))|Nitrosopumilus maritimus (strain SCM1)

Query: 1 TGLSVVISLK 10
+GL+V+I LK
Sbjct: 39 SGLNVIIGLK 48


>sp|ILVC_CENSY|KETOL-ACID reductoisomerase (NADP(+))|Cenarchaeum symbiosum (strain A)

Query: 1 TGLSVVISLK 10
+GL VV+ LK
Sbjct: 39 SGLKVVVGLK 48


>sp|GYRB_HALVD|DNA gyrase subunit B|Haloferax volcanii (strain ATCC 29605

Query: 2 GLSVVISLK 10
GL+ VIS+K
Sbjct: 323 GLTAVISIK 331




139|SequenceR|700|691|QPSRGTGLSV

>sp|YIH50_HALSA|UNCHARACTERIZED protein in transposable element|Halobacterium salinarum (strain

Query: 1 QPSRGTGLS 9
QPSR GLS
Sbjct: 143 QPSRSRGLS 151


>sp|AROK_AERPE|SHIKIMATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 3 SRGTGLSV 10
SRG GLSV
Sbjct: 126 SRGAGLSV 133


>sp|DNLI_SULTO|DNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 SRGTGLSV 10
S+G GLSV
Sbjct: 550 SKGAGLSV 557


>sp|TMCA_AERPE|TRNA(MET) cytidine acetyltransferase TmcA|Aeropyrum pernix (strain ATCC

Query: 2 PSRGTGL 8
P RGTGL
Sbjct: 119 PPRGTGL 125




140|SequenceR|705|696|CTVPVQPSRG

>sp|MCRW_METJA|METHYL-COENZYME M reductase II operon|Methanocaldococcus jannaschii (strain ATCC

Query: 2 TVPVQPSRG 10
TVP P+RG
Sbjct: 56 TVPFGPARG 64


>sp|RNH_HALSA|RIBONUCLEASE HI|Halobacterium salinarum (strain ATCC 700922

Query: 2 TVPVQPSRG 10
T VQP RG
Sbjct: 59 TAVVQPDRG 67


>sp|TRM1_HALMA|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloarcula marismortui

Query: 2 TVPVQPSRG 10
TVP QP G
Sbjct: 11 TVPEQPEAG 19




141|SequenceR|710|701|RFVDVCTVPV

>sp|ADHS2_ARCFU|PUTATIVE 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase

Query: 1 RFVDVCTVPV 10
R VD C VPV
Sbjct: 189 RVVDGCPVPV 198


>sp|COMD_METJA|SULFOPYRUVATE decarboxylase subunit alpha|Methanocaldococcus jannaschii (strain

Query: 1 RFVDVCTVP 9
+ +DVC +P
Sbjct: 118 KLLDVCEIP 126


>sp|ASSY_METHJ|ARGININOSUCCINATE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 RFVDVCTVP 9
+FVD C +P
Sbjct: 68 QFVDRCLMP 76


>sp|NADM_PYRNV|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 5 VCTVPV 10
VCT+P+
Sbjct: 71 VCTIPI 76


>sp|SYH_METTH|HISTIDINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 RFVDVCTVPV 10
R VDV +P+
Sbjct: 331 RMVDVFVIPI 340


>sp|ADEC_METMJ|ADENINE deaminase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 FVDVCTVP 9
VD CT P
Sbjct: 214 LVDACTAP 221




142|SequenceR|715|706|WPNSPRFVDV

>sp|ASSY_METAC|ARGININOSUCCINATE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 PNSPRFVDV 10
PN PR VD+
Sbjct: 209 PNEPRIVDI 217


>sp|ASSY_METMA|ARGININOSUCCINATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 PNSPRFVDV 10
PN PR VD+
Sbjct: 209 PNEPRIVDI 217


>sp|PYRE_SACS2|OROTATE phosphoribosyltransferase|Saccharolobus solfataricus (strain ATCC

Query: 2 PNSPRFVDV 10
PN P F D+
Sbjct: 36 PNYPEFYDI 44


>sp|ASSY_METBF|ARGININOSUCCINATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 2 PNSPRFVDV 10
P PR VD+
Sbjct: 209 PEQPRIVDI 217


>sp|DIPPS_ARCFU|BIFUNCTIONAL IPC transferase and DIPP|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 PRFVDV 10
PRFVD+
Sbjct: 194 PRFVDI 199


>sp|SFSA_METS3|SUGAR fermentation stimulation protein homolog|Methanobrevibacter smithii

Query: 1 WPNSPRF 7
W N P+F
Sbjct: 193 WENDPKF 199


>sp|ASSY_METBA|ARGININOSUCCINATE synthase|Methanosarcina barkeri

Query: 2 PNSPRFVDV 10
P PR VD+
Sbjct: 209 PEQPRVVDI 217


>sp|SYS2_METVS|TYPE-2 serine--tRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 WPNSPRFVD 9
W SP+FV+
Sbjct: 366 WMGSPKFVE 374


>sp|AATA_PYRNV|A-TYPE ATP synthase subunit A|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 WPNSPRF 7
WP SPR
Sbjct: 417 WPLSPRL 423


>sp|AATA_PYRIL|A-TYPE ATP synthase subunit A|Pyrobaculum islandicum (strain DSM 4184

Query: 1 WPNSPRF 7
WP SPR
Sbjct: 417 WPLSPRL 423


>sp|AATA_PYRAR|A-TYPE ATP synthase subunit A|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 WPNSPRF 7
WP SPR
Sbjct: 417 WPLSPRL 423


>sp|HPPA1_METMA|K(+)-STIMULATED pyrophosphate-energized sodium pump|Methanosarcina mazei (strain

Query: 1 WPNSPRFVDV 10
W N+ +F+++
Sbjct: 616 WDNAKKFIEL 625


>sp|AATA_PYRAE|A-TYPE ATP synthase subunit A|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 WPNSPRF 7
WP SPR
Sbjct: 417 WPLSPRL 423


>sp|AATA_PYRCJ|A-TYPE ATP synthase subunit A|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 WPNSPRF 7
WP SPR
Sbjct: 417 WPLSPRL 423


>sp|SYS2_METMP|TYPE-2 serine--tRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 WPNSPRFVD 9
W SP FV+
Sbjct: 366 WMGSPEFVE 374


>sp|SYS2_METJA|TYPE-2 serine--tRNA ligase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 WPNSPRFVD 9
W SP FV+
Sbjct: 369 WIGSPEFVE 377


>sp|MRE11_AERPE|DNA double-strand break repair protein|Aeropyrum pernix (strain ATCC

Query: 2 PNSPRFVDV 10
P SP +VD+
Sbjct: 230 PGSPLYVDL 238




143|SequenceR|720|711|TKALEWPNSP

>sp|DAPB_METS3|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 ALEWPNSP 10
A+E PNSP
Sbjct: 32 AIEIPNSP 39


>sp|NNRD_HALTV|ADP-DEPENDENT (S)-NAD(P)H-hydrate dehydratase|Haloterrigena turkmenica (strain

Query: 3 ALEWPNSP 10
A+E+PN P
Sbjct: 27 AIEYPNQP 34


>sp|RL3_SACS2|LARGE ribosomal subunit protein uL3|Saccharolobus solfataricus (strain

Query: 5 EWPNSP 10
+WPNSP
Sbjct: 60 DWPNSP 65


>sp|RL3_SACI6|LARGE ribosomal subunit protein uL3|Saccharolobus islandicus (strain

Query: 5 EWPNSP 10
+WPNSP
Sbjct: 60 DWPNSP 65


>sp|RL3_SACI4|LARGE ribosomal subunit protein uL3|Saccharolobus islandicus (strain

Query: 5 EWPNSP 10
+WPNSP
Sbjct: 60 DWPNSP 65


>sp|RL3_SACI3|LARGE ribosomal subunit protein uL3|Saccharolobus islandicus (strain

Query: 5 EWPNSP 10
+WPNSP
Sbjct: 60 DWPNSP 65


>sp|RL3_SACI7|LARGE ribosomal subunit protein uL3|Saccharolobus islandicus (strain

Query: 5 EWPNSP 10
+WPNSP
Sbjct: 60 DWPNSP 65


>sp|RL3_SACI2|LARGE ribosomal subunit protein uL3|Saccharolobus islandicus (strain

Query: 5 EWPNSP 10
+WPNSP
Sbjct: 60 DWPNSP 65


>sp|RL3_SACI1|LARGE ribosomal subunit protein uL3|Saccharolobus islandicus (strain

Query: 5 EWPNSP 10
+WPNSP
Sbjct: 60 DWPNSP 65


>sp|RL3_METKA|LARGE ribosomal subunit protein uL3|Methanopyrus kandleri (strain AV19

Query: 5 EWPNSP 10
+WPNSP
Sbjct: 61 DWPNSP 66


>sp|DP2L_HALSA|DNA polymerase II large subunit|Halobacterium salinarum (strain ATCC

Query: 3 ALEWPNS 9
A EWPN+
Sbjct: 590 AAEWPNA 596


>sp|DAPB_METST|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 ALEWPNSP 10
+E PNSP
Sbjct: 32 GIEMPNSP 39


>sp|FPRA_METTM|COENZYME F420H(2) oxidase|Methanothermobacter marburgensis (strain ATCC

Query: 1 TKALEWPNS 9
T L WP+S
Sbjct: 147 TPLLHWPDS 155


>sp|PCNA_NITMS|DNA polymerase sliding clamp|Nitrosopumilus maritimus (strain SCM1)

Query: 4 LEWPNS 9
+ WPNS
Sbjct: 51 ISWPNS 56


>sp|PCNA_CENSY|DNA polymerase sliding clamp|Cenarchaeum symbiosum (strain A)

Query: 4 LEWPNS 9
+ WPNS
Sbjct: 51 ISWPNS 56


>sp|NNRD_NATMM|ADP-DEPENDENT (S)-NAD(P)H-hydrate dehydratase|Natrialba magadii (strain ATCC

Query: 3 ALEWPNSP 10
++E+PN P
Sbjct: 28 SIEYPNQP 35


>sp|GLGA_METJA|PROBABLE glycogen synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KALEWPNSP 10
+ L W NSP
Sbjct: 493 RNLSWQNSP 501




144|SequenceR|725|716|KAGFVTKALE

>sp|PRIS_STAMF|DNA primase small subunit PriS|Staphylothermus marinus (strain ATCC

Query: 1 KAGFVTKALE 10
K+G +TK +E
Sbjct: 294 KSGLITKLIE 303


>sp|AGLD_HALVD|GLYCOSYLTRANSFERASE AglD|Haloferax volcanii (strain ATCC 29605

Query: 1 KAGFVTKAL 9
KAGF+T A+
Sbjct: 327 KAGFLTGAI 335


>sp|G1PDH_METB6|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanoregula boonei (strain DSM 21154

Query: 2 AGFVTKAL 9
A FVTKAL
Sbjct: 233 AWFVTKAL 240


>sp|BIOW_META3|6-CARBOXYHEXANOATE--COA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 AGFVTKALE 10
AG++ +ALE
Sbjct: 34 AGYIKRALE 42




145|SequenceR|730|721|MKGLEKAGFV

>sp|TRM1_METTH|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanothermobacter

Query: 1 MKGLEKAGF 9
M GLE AGF
Sbjct: 341 MDGLEAAGF 349


>sp|PYRG_THEVO|CTP synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 4 LEKAGFV 10
+EKAGFV
Sbjct: 466 IEKAGFV 472


>sp|HELS_THEAC|ATP-DEPENDENT DNA helicase Hel308|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 MKGLEKAGFV 10
+K LEK GF+
Sbjct: 450 LKFLEKNGFI 459


>sp|Y189_METAR|UPF0313 protein UNCMA_01890|Methanocella arvoryzae (strain DSM 22066

Query: 4 LEKAGF 9
LEKAGF
Sbjct: 39 LEKAGF 44


>sp|PIMT_THEON|PROTEIN-L-ISOASPARTATE O-methyltransferase|Thermococcus onnurineus (strain NA1)

Query: 2 KGLEKAGF 9
K LEKAG+
Sbjct: 121 KNLEKAGY 128


>sp|PYRH_PYRFU|URIDYLATE kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 KGLEKAG 8
KG+EKAG
Sbjct: 173 KGIEKAG 179


>sp|KORB_METJA|2-OXOGLUTARATE synthase subunit KorB|Methanocaldococcus jannaschii (strain ATCC

Query: 2 KGLEKAGF 9
KG++K GF
Sbjct: 185 KGIQKKGF 192


>sp|FEN_METMA|FLAP endonuclease 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 KGLEKAG 8
KGLEK G
Sbjct: 239 KGLEKVG 245


>sp|DP2S_PYRAB|DNA polymerase II small subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 MKGLEKAGFV 10
+K LE+AG++
Sbjct: 5 VKALERAGYL 14


>sp|FEN_METAC|FLAP endonuclease 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 KGLEKAG 8
KGLEK G
Sbjct: 239 KGLEKVG 245


>sp|RS19E_THEAC|SMALL ribosomal subunit protein eS19|Thermoplasma acidophilum (strain

Query: 4 LEKAGFV 10
LEKAG+V
Sbjct: 105 LEKAGYV 111


>sp|FEN_METBF|FLAP endonuclease 1|Methanosarcina barkeri (strain Fusaro /

Query: 2 KGLEKAG 8
KGLEK G
Sbjct: 239 KGLEKVG 245


>sp|SYG_THEGJ|GLYCINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 2 KGLEKAGFV 10
+ L+KAGF+
Sbjct: 496 RKLQKAGFI 504


>sp|SYK2_METMA|LYSINE--TRNA ligase 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 EKAGFV 10
EKAGFV
Sbjct: 412 EKAGFV 417




146|SequenceR|735|726|CCDVVMKGLE

>sp|DNLI_CALMQ|DNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 CCDVVMKG 8
CC V++KG
Sbjct: 549 CCSVMLKG 556


>sp|GLMS_THEKO|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Thermococcus kodakarensis (strain

Query: 2 CDVVMKGLE 10
C+V++KGL+
Sbjct: 14 CEVIVKGLK 22


>sp|Y165_METJA|UNCHARACTERIZED protein MJ0165|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CCDVVMKGLE 10
CC +V+ G+E
Sbjct: 181 CCIIVVAGME 190


>sp|CEDB_SULAC|DNA import protein CedB|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 DVVMKGLE 10
DVV KGLE
Sbjct: 197 DVVKKGLE 204


>sp|COFD_METVS|2-PHOSPHO-L-LACTATE transferase|Methanococcus vannielii (strain ATCC 35089

Query: 1 CCDVVMKGLE 10
C D +MK +E
Sbjct: 284 CIDTIMKTIE 293


>sp|SUCC2_ARCFU|SUCCINATE--COA ligase [ADP-forming] subunit beta|Archaeoglobus fulgidus (strain

Query: 2 CDVVMKGLE 10
CD V KGL+
Sbjct: 316 CDEVAKGLK 324


>sp|RPO1C_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1C|Halobacterium salinarum (strain ATCC

Query: 3 DVVMKGLE 10
D+V KG+E
Sbjct: 223 DIVFKGIE 230


>sp|RPO1C_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1C|Halobacterium salinarum (strain ATCC

Query: 3 DVVMKGLE 10
D+V KG+E
Sbjct: 223 DIVFKGIE 230


>sp|PYRG_METMJ|CTP synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 CDVVMK 7
CDVV+K
Sbjct: 429 CDVVLK 434


>sp|HELS_SACS9|ATP-DEPENDENT DNA helicase Hel308|Saccharolobus solfataricus (strain 98/2)

Query: 3 DVVMKGLE 10
D++ KGLE
Sbjct: 513 DIIRKGLE 520


>sp|HELS_SACS2|ATP-DEPENDENT DNA helicase Hel308|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 DVVMKGLE 10
D++ KGLE
Sbjct: 506 DIIRKGLE 513


>sp|HELS_SACI5|ATP-DEPENDENT DNA helicase Hel308|Saccharolobus islandicus (strain REY15A)

Query: 3 DVVMKGLE 10
D++ KGLE
Sbjct: 513 DIIRKGLE 520


>sp|ILVD_PYRFU|DIHYDROXY-ACID dehydratase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 DVVMKGLE 10
DV+ KG+E
Sbjct: 4 DVIKKGIE 11


>sp|ILVD_PYRAB|DIHYDROXY-ACID dehydratase|Pyrococcus abyssi (strain GE5 /

Query: 3 DVVMKGLE 10
DV+ KG+E
Sbjct: 4 DVIKKGIE 11




147|SequenceR|740|731|GDPDTCCDVV

>sp|METK_AERPE|S-ADENOSYLMETHIONINE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 1 GDPDTCCD 8
G PDT CD
Sbjct: 29 GHPDTICD 36


>sp|AGL5_HALVD|LOW-SALT glycan biosynthesis hexosyltransferase Agl5|Haloferax volcanii

Query: 3 PDTCCDVV 10
PD C DVV
Sbjct: 242 PDECADVV 249


>sp|ADHS_METTH|2-AMINO-3,7-DIDEOXY-D-THREO-HEPT-6-ULOSONATE synthase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 GDPDTCCDVV 10
GDPDT DVV
Sbjct: 181 GDPDTFRDVV 190


>sp|MTRA_METMS|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanohalophilus mahii (strain

Query: 1 GDPDTCCDVV 10
GDP+ C V+
Sbjct: 21 GDPENCVAVI 30


>sp|METK_METJA|S-ADENOSYLMETHIONINE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 28 GHPDSICD 35


>sp|METK_METVS|S-ADENOSYLMETHIONINE synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 28 GHPDSICD 35


>sp|METK_HALMA|S-ADENOSYLMETHIONINE synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 GDPDTCCD 8
G PDT CD
Sbjct: 30 GHPDTICD 37


>sp|METK_META3|S-ADENOSYLMETHIONINE synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 28 GHPDSICD 35


>sp|MTRA_METV3|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanococcus voltae (strain ATCC

Query: 1 GDPDTCCDVV 10
G+P++C VV
Sbjct: 21 GNPESCVAVV 30


>sp|LONB_METJA|ARCHAEAL Lon protease|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 DTCCDVV 10
D CC+VV
Sbjct: 348 DGCCEVV 354


>sp|GYAR_THEPD|GLYOXYLATE reductase|Thermofilum pendens (strain DSM 2475

Query: 6 CCDVV 10
CCDVV
Sbjct: 23 CCDVV 27


>sp|THIC1_METTH|PHOSPHOMETHYLPYRIMIDINE synthase 1|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 DPDTC 6
DPDTC
Sbjct: 404 DPDTC 408


>sp|PUR2_METKA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 DPDTCCDVV 10
DPD CD +
Sbjct: 131 DPDEACDFI 139


>sp|METK_METM7|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain C7 /

Query: 1 GDPDTCCDVV 10
G PD+ CD V
Sbjct: 28 GHPDSICDGV 37


>sp|METK_METM5|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain C5 /

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 28 GHPDSICD 35


>sp|MTRA_METFA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanocaldococcus fervens (strain

Query: 1 GDPDTCCDVV 10
G+P++C VV
Sbjct: 21 GNPESCVGVV 30


>sp|METK_METMI|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (Methanococcus deltae)

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 28 GHPDSICD 35


>sp|METK_HALWD|S-ADENOSYLMETHIONINE synthase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 30 GHPDSICD 37


>sp|METK_METMP|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 28 GHPDSICD 35


>sp|METK_METM6|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain C6 /

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 28 GHPDSICD 35


>sp|MTRA_METMP|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanococcus maripaludis (strain

Query: 1 GDPDTCCDVV 10
G+P++C VV
Sbjct: 21 GNPESCVAVV 30


>sp|LYSY_IGNH4|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 DPDTCCDVV 10
DPD DVV
Sbjct: 65 DPDQLSDVV 73


>sp|MTRA_METJA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanocaldococcus jannaschii

Query: 1 GDPDTCCDVV 10
G+P++C VV
Sbjct: 21 GNPESCVGVV 30


>sp|AATF_THEGJ|A-TYPE ATP synthase subunit F|Thermococcus gammatolerans (strain DSM

Query: 1 GDPDT 5
GDPDT
Sbjct: 7 GDPDT 11


>sp|MTRA_METM7|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanococcus maripaludis (strain

Query: 1 GDPDTCCDVV 10
G+P++C V+
Sbjct: 21 GNPESCVGVI 30


>sp|METK_NATPD|S-ADENOSYLMETHIONINE synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 30 GHPDSLCD 37


>sp|MTRA_META3|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanococcus aeolicus (strain ATCC

Query: 1 GDPDTCCDVV 10
G+P++C VV
Sbjct: 21 GNPESCVAVV 30


>sp|GSA_HALLT|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 DPDTCC 7
DPD CC
Sbjct: 364 DPDACC 369


>sp|THIC2_METBF|PHOSPHOMETHYLPYRIMIDINE synthase 2|Methanosarcina barkeri (strain Fusaro /

Query: 2 DPDTCCDVV 10
DP+T C V
Sbjct: 26 DPETVCSCV 34


>sp|METK_HALSA|S-ADENOSYLMETHIONINE synthase|Halobacterium salinarum (strain ATCC 700922

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 30 GHPDSICD 37


>sp|METK_HALS3|S-ADENOSYLMETHIONINE synthase|Halobacterium salinarum (strain ATCC 29341

Query: 1 GDPDTCCD 8
G PD+ CD
Sbjct: 30 GHPDSICD 37


>sp|PHNC2_NATPD|PHOSPHONATES import ATP-binding protein PhnC|Natronomonas pharaonis (strain ATCC

Query: 2 DPDTCCDVV 10
DPDT DV+
Sbjct: 177 DPDTSRDVM 185


>sp|SYK_HALMA|LYSINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 2 DPDTCCD 8
DP CCD
Sbjct: 121 DPFGCCD 127


>sp|SYK_HALSA|LYSINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 DPDTCCD 8
DP CCD
Sbjct: 122 DPFGCCD 128


>sp|PUR5_METKA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 DPDTCCDV 9
DPD C ++
Sbjct: 112 DPDVCAEI 119


>sp|SYM_METKA|METHIONINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 DPDTCCDVV 10
DP+ C +V+
Sbjct: 466 DPERCAEVL 474




148|SequenceR|745|736|RDVARGDPDT

>sp|HIS8_METS3|HISTIDINOL-PHOSPHATE aminotransferase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 RDVARGDPD 9
RD+A G+PD
Sbjct: 179 RDIASGNPD 187


>sp|CDCH_HALSA|PROTEIN CdcH|Halobacterium salinarum (strain ATCC 700922

Query: 1 RDVARGDPDT 10
R +AR DPDT
Sbjct: 18 RGIARLDPDT 27


>sp|TRUD_SULTO|PROBABLE tRNA pseudouridine synthase D|Sulfurisphaera tokodaii (strain DSM

Query: 1 RDVARGDP 8
R++AR DP
Sbjct: 352 REIARTDP 359


>sp|SYL2_METS5|LEUCINE--TRNA ligase 2|Metallosphaera sedula (strain ATCC 51363

Query: 2 DVARGDPD 9
DVA+GD D
Sbjct: 97 DVAKGDKD 104


>sp|LONB_PYRAB|ARCHAEAL Lon protease|Pyrococcus abyssi (strain GE5 /

Query: 3 VARGDPDT 10
++RGDP+T
Sbjct: 151 MSRGDPNT 158


>sp|Y400_METKA|UPF0200 protein MK0400|Methanopyrus kandleri (strain AV19 /

Query: 1 RDVARGDPD 9
R + RGDPD
Sbjct: 175 RAILRGDPD 183


>sp|SYR_METHJ|ARGININE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 VARGDPDT 10
V GDPDT
Sbjct: 213 VESGDPDT 220


>sp|TRPD_METKA|ANTHRANILATE phosphoribosyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 1 RDVARGDPDT 10
+DVA DP+T
Sbjct: 262 KDVAGADPET 271


>sp|ARCH_METKA|PROTEIN archease|Methanopyrus kandleri (strain AV19 /

Query: 1 RDVARGDP 8
R VARG+P
Sbjct: 96 RGVARGEP 103


>sp|KORA_METTM|2-OXOGLUTARATE synthase subunit KorA|Methanothermobacter marburgensis (strain ATCC

Query: 2 DVARGDPDT 10
DV RG P T
Sbjct: 104 DVQRGSPST 112


>sp|CDAT8_METKA|TRNA(CYTOSINE(8)) deaminase|Methanopyrus kandleri (strain AV19 /

Query: 3 VARGDPD 9
V RGDPD
Sbjct: 169 VTRGDPD 175


>sp|EF2_THEVO|ELONGATION factor 2|Thermoplasma volcanium (strain ATCC 51530

Query: 1 RDVARGDP 8
RD+++ DP
Sbjct: 411 RDISKADP 418


>sp|EF2_THEAC|ELONGATION factor 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 RDVARGDP 8
RD+++ DP
Sbjct: 411 RDISKADP 418


>sp|P845_THEAC|PHOSPHATASE Ta0845|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 DVARGDPD 9
DV++G PD
Sbjct: 126 DVSKGKPD 133


>sp|SYE_METBF|GLUTAMATE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 DVARGDPDT 10
++A+G+P+T
Sbjct: 59 EIAKGNPET 67


>sp|MCRA_METFE|METHYL-COENZYME M reductase subunit alpha|Methanothermus fervidus

Query: 3 VARGDPDT 10
+ARGD D+
Sbjct: 501 IARGDADS 508


>sp|YGY3_HALL2|UNCHARACTERIZED 50.6 kDa protein in|Haloferax lucentense (strain DSM 14919

Query: 1 RDVARGDP 8
RDV RG+P
Sbjct: 222 RDVLRGEP 229


>sp|THIC_METVS|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus vannielii (strain ATCC 35089

Query: 2 DVARGDP 8
DVA+G+P
Sbjct: 356 DVAKGNP 362




149|SequenceR|750|741|CWARARDVAR

>sp|Y1039_PYRHO|UNCHARACTERIZED ABC transporter extracellular-binding protein|Pyrococcus horikoshii

Query: 2 WARARDVAR 10
WA RDVA+
Sbjct: 361 WAPMRDVAK 369


>sp|ARGD_METKA|ACETYLORNITHINE aminotransferase|Methanopyrus kandleri (strain AV19 /

Query: 4 RARDVAR 10
RA+DVAR
Sbjct: 338 RAKDVAR 344


>sp|SYI_METTH|ISOLEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 ARARDVAR 10
ARARD AR
Sbjct: 812 ARARDTAR 819


>sp|SYI_METTM|ISOLEUCINE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 3 ARARDVAR 10
ARARD AR
Sbjct: 812 ARARDTAR 819


>sp|G1PDH_METS5|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Metallosphaera sedula (strain ATCC 51363

Query: 2 WARARDVAR 10
WA A VAR
Sbjct: 337 WASAEKVAR 345


>sp|SYS_CENSY|SERINE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 1 CWARARDVAR 10
CW A+D R
Sbjct: 335 CWMAAQDAYR 344


>sp|AHBC_METBF|FE-COPROPORPHYRIN III synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 CWARARDV 8
C+A+A+D+
Sbjct: 57 CYAQAKDI 64


>sp|KPTA2_ARCFU|PROBABLE RNA 2'-phosphotransferase 2|Archaeoglobus fulgidus (strain ATCC

Query: 2 WARARDVAR 10
WA RDV +
Sbjct: 57 WAELRDVLK 65




150|SequenceR|755|746|IGVMECWARA

>sp|LIPA_SACS2|LIPOYL synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 VMECWA 8
+MECW
Sbjct: 39 IMECWG 44


>sp|LIPA_SULAC|LIPOYL synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 VMECWA 8
+MECW
Sbjct: 37 IMECWG 42


>sp|RAD50_METMP|DNA double-strand break repair Rad50|Methanococcus maripaludis (strain

Query: 1 IGVMECWAR 9
IG++EC+ +
Sbjct: 692 IGIVECYVK 700


>sp|Y011_PYRAR|PROTEIN Pars_0011|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 IGVMECWA 8
+ V ECW+
Sbjct: 149 VAVEECWS 156


>sp|HIS8_HALMA|HISTIDINOL-PHOSPHATE aminotransferase|Haloarcula marismortui (strain ATCC 43049

Query: 2 GVMECWARA 10
G ++C ARA
Sbjct: 93 GALDCLARA 101


>sp|SYM_METB6|METHIONINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 IGVMECWAR 9
+ ECWA+
Sbjct: 489 VKAQECWAQ 497


>sp|CMR1B_PYRFU|CRISPR system Cmr subunit Cmr1-2|Pyrococcus furiosus (strain ATCC 43587

Query: 2 GVMECWARA 10
GVM W RA
Sbjct: 33 GVMRWWFRA 41


>sp|RL10E_AERPE|LARGE ribosomal subunit protein uL16|Aeropyrum pernix (strain ATCC 700893

Query: 3 VMECWAR 9
V+E WAR
Sbjct: 134 VLEVWAR 140




151|SequenceR|760|751|LRFYQIGVME

>sp|RTCB_METKA|TRNA-SPLICING ligase RtcB|Methanopyrus kandleri (strain AV19 /

Query: 2 RFYQIGV 8
RFY IGV
Sbjct: 560 RFYDIGV 566


>sp|ENDA_SULTO|TRNA-SPLICING endonuclease|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 RFYQIGVME 10
R YQIGV +
Sbjct: 75 RLYQIGVTQ 83


>sp|RTCB_PYRFU|TRNA-SPLICING ligase RtcB|Pyrococcus furiosus (strain ATCC 43587

Query: 2 RFYQIGV 8
RFY IGV
Sbjct: 564 RFYDIGV 570


>sp|RNP3_PYRFU|RIBONUCLEASE P protein component 3|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LRFYQIGVME 10
L FY +G++E
Sbjct: 202 LSFYPLGILE 211


>sp|APAUH_THEKO|N(1)-AMINOPROPYLAGMATINE ureohydrolase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 LRFYQIGVM 9
L FY IG M
Sbjct: 275 LLFYSIGAM 283


>sp|RGYR_THEKO|REVERSE gyrase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 FYQIGVM 9
YQIG+M
Sbjct: 1282 LYQIGIM 1288


>sp|SYFA_SULAC|PHENYLALANINE--TRNA ligase alpha subunit|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 FYQIGVME 10
FY+IG+ E
Sbjct: 371 FYKIGIKE 378


>sp|ELP3_METIM|TRNA uridine(34) acetyltransferase|Methanocaldococcus infernus (strain

Query: 1 LRFYQIGV 8
LR Y+IG+
Sbjct: 36 LRIYRIGI 43




152|SequenceR|765|756|GLQPNLRFYQ

>sp|NIFD_METMI|NITROGENASE molybdenum-iron protein alpha chain|Methanococcus maripaludis

Query: 2 LQPNLRFYQ 10
+QP L FYQ
Sbjct: 325 IQPELDFYQ 333


>sp|HCGC_METJA|6-CARBOXYMETHYL-5-METHYL-4-HYDROXYPYRIDIN-2-OL 3-C-methyltransferase HcgC|Methanocaldococcus jannaschii (strain

Query: 4 PNLRFYQ 10
PNLR+Y+
Sbjct: 211 PNLRYYE 217


>sp|CISY_HALVD|CITRATE synthase|Haloferax volcanii (strain ATCC 29605

Query: 1 GLQPNLRFY 9
GL PN+ FY
Sbjct: 310 GLAPNVDFY 318


>sp|HOSA_SULTO|HOMOCITRATE synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 PNLRFYQ 10
PN+RFY+
Sbjct: 354 PNVRFYR 360


>sp|HOSA_SULAC|HOMOCITRATE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 PNLRFYQ 10
PN+RFY+
Sbjct: 362 PNVRFYR 368


>sp|Y558_METJA|UNCHARACTERIZED protein MJ0558|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GLQPNLRF 8
GL+P++RF
Sbjct: 205 GLKPDIRF 212


>sp|NADA_THEGJ|QUINOLINATE synthase|Thermococcus gammatolerans (strain DSM 15229

Query: 2 LQPNLRFY 9
L PN++FY
Sbjct: 244 LYPNIKFY 251


>sp|Y153_THEVO|UPF0284 protein TV0153|Thermoplasma volcanium (strain ATCC 51530

Query: 3 QPNLRFYQ 10
P LR+YQ
Sbjct: 292 HPGLRYYQ 299


>sp|CPGS_PYRFU|CYCLIC 2,3-diphosphoglycerate synthetase|Pyrococcus furiosus (strain

Query: 2 LQPNLRF 8
L PNLRF
Sbjct: 81 LTPNLRF 87


>sp|GSA2_CENSY|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase 2|Cenarchaeum symbiosum (strain A)

Query: 1 GLQPNLRFYQ 10
G+ N+RFY+
Sbjct: 28 GVSHNIRFYE 37


>sp|NIFD_METMP|NITROGENASE molybdenum-iron protein alpha chain|Methanococcus maripaludis

Query: 2 LQPNLRFYQ 10
+QP L FY+
Sbjct: 325 IQPELDFYK 333


>sp|HELS_METJA|ATP-DEPENDENT DNA helicase Hel308|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LQPNLRFY 9
+ PNLR Y
Sbjct: 1027 MMPNLRVY 1034


>sp|FOLD_THEAC|BIFUNCTIONAL protein FolD|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 GLQPNLRFYQ 10
GL+P+L+ Q
Sbjct: 25 GLEPSLKLIQ 34


>sp|LONB_PYRAB|ARCHAEAL Lon protease|Pyrococcus abyssi (strain GE5 /

Query: 3 QPNLRFY 9
Q N+RFY
Sbjct: 130 QENIRFY 136


>sp|CS12F_MICX1|CRISPR-ASSOCIATED endodeoxyribonuclease Cas12f2|Micrarchaeota archaeon (strain

Query: 2 LQPNLRFYQ 10
L P R+YQ
Sbjct: 508 LNPTCRYYQ 516


>sp|FLAB5_THEKO|FLAGELLIN B5|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 GLQPNLRFY 9
G PN +FY
Sbjct: 151 GFDPNNKFY 159


>sp|KAD_PYRHO|ADENYLATE kinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 LQPNLRFYQ 10
++P ++FYQ
Sbjct: 177 MEPIIKFYQ 185


>sp|ILVC_SULTO|KETOL-ACID reductoisomerase (NADP(+))|Sulfurisphaera tokodaii (strain DSM

Query: 1 GLQPNLRFYQ 10
G QP + +Y+
Sbjct: 218 GYQPEIAYYE 227


>sp|KAD_PYRFU|ADENYLATE kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LQPNLRFYQ 10
++P ++FYQ
Sbjct: 177 MEPIIKFYQ 185


>sp|KAD_PYRAB|ADENYLATE kinase|Pyrococcus abyssi (strain GE5 /

Query: 2 LQPNLRFYQ 10
++P ++FYQ
Sbjct: 177 MEPIIKFYQ 185


>sp|CISY_SACS2|CITRATE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 GLQPNLRFY 9
G+ PN FY
Sbjct: 307 GIYPNTDFY 315




153|SequenceR|770|761|LMIDTGLQPN

>sp|PPSA_METTH|PROBABLE phosphoenolpyruvate synthase|Methanothermobacter

Query: 1 LMIDTGLQP 9
M DTGLQP
Sbjct: 78 FMTDTGLQP 86


>sp|RFCS_METLZ|REPLICATION factor C small subunit|Methanocorpusculum labreanum (strain ATCC

Query: 1 LMIDTGLQPN 10
LM D G+ PN
Sbjct: 254 LMYDKGIAPN 263


>sp|XERA_SACS2|TYROSINE recombinase XerA|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LMIDTGLQPN 10
L++DTGL+ N
Sbjct: 143 LLLDTGLRAN 152


>sp|PLS_PYRFU|PYROLYSIN furiosus (strain ATCC 43587

Query: 2 MIDTGLQPN 10
++DTG+ PN
Sbjct: 177 VLDTGVDPN 185


>sp|NSR_PYRFU|NAD(P)H sulfur oxidoreductase (CoA-dependent)|Pyrococcus furiosus (strain

Query: 1 LMIDTGLQPN 10
++I TG++PN
Sbjct: 236 VIIATGIKPN 245


>sp|IDI_HALMA|ISOPENTENYL-DIPHOSPHATE Delta-isomerase|Haloarcula marismortui (strain ATCC 43049

Query: 4 DTGLQPN 10
DT L+PN
Sbjct: 140 DTSLEPN 146


>sp|DUT_METBU|PROBABLE deoxyuridine 5'-triphosphate nucleotidohydrolase|Methanococcoides

Query: 3 IDTGLQPN 10
+DT LQPN
Sbjct: 26 MDTQLQPN 33


>sp|NSR_THEKO|NAD(P)H sulfur oxidoreductase (CoA-dependent)|Thermococcus kodakarensis

Query: 1 LMIDTGLQPN 10
+++ TG++PN
Sbjct: 236 VIVATGIKPN 245


>sp|Y153_THEVO|UPF0284 protein TV0153|Thermoplasma volcanium (strain ATCC 51530

Query: 3 IDTGLQPN 10
I+TGL+P+
Sbjct: 110 IETGLKPS 117




154|SequenceR|775|766|DSVEDLMIDT

>sp|TRUA_THEAC|TRNA pseudouridine synthase A|Thermoplasma acidophilum (strain ATCC

Query: 2 SVEDLMIDT 10
SVED +IDT
Sbjct: 26 SVEDTIIDT 34


>sp|Y297_METJA|UNCHARACTERIZED protein MJ0297|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 SVEDLMIDT 10
++EDLMID+
Sbjct: 240 TIEDLMIDS 248


>sp|KCY_PYRAB|CYTIDYLATE kinase|Pyrococcus abyssi (strain GE5 /

Query: 2 SVEDLMIDT 10
S+ DL+IDT
Sbjct: 150 SIYDLIIDT 158


>sp|DNLI_METMP|DNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 SVEDLMIDT 10
S+ED MI+T
Sbjct: 236 SIEDAMIET 244


>sp|KCY_PYRFU|CYTIDYLATE kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 SVEDLMIDT 10
S+ DL+IDT
Sbjct: 150 SIYDLIIDT 158


>sp|PTH_CALMQ|PEPTIDYL-TRNA hydrolase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 DSVEDLM 7
DSVEDL+
Sbjct: 60 DSVEDLI 66


>sp|CPGS_METTH|CYCLIC 2,3-diphosphoglycerate synthetase|Methanothermobacter

Query: 1 DSVEDLMID 9
DSV+DL+++
Sbjct: 358 DSVKDLLVE 366




155|SequenceR|780|771|NVLVTDSVED

>sp|PTH_CALMQ|PEPTIDYL-TRNA hydrolase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 VLVTDSVED 10
VLV DSVED
Sbjct: 56 VLVVDSVED 64


>sp|RNH2_AERPE|RIBONUCLEASE HII|Aeropyrum pernix (strain ATCC 700893

Query: 1 NVLVTDSVED 10
N+LVT +VE+
Sbjct: 79 NILVTKAVEE 88


>sp|HMGCS_SULTO|HYDROXYMETHYLGLUTARYL-COA synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 NVLVTDSVED 10
++LVTD +E+
Sbjct: 305 SILVTDKIEE 314


>sp|Y1457_METJA|UNCHARACTERIZED protein MJ1457|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 LVTDSVED 10
L+TD++ED
Sbjct: 72 LITDAIED 79


>sp|SYY_THEAC|TYROSINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 VLVTDSVED 10
+LVTD +ED
Sbjct: 229 ILVTDHMED 237




156|SequenceR|785|776|TEWLANVLVT

>sp|FLPA_METMJ|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanoculleus marisnigri

Query: 2 EWLANVLVT 10
+WL NVLV+
Sbjct: 2 KWLGNVLVS 10


>sp|METK_THEKO|S-ADENOSYLMETHIONINE synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 EWLANV 7
EWLAN+
Sbjct: 385 EWLANI 390


>sp|METK_PYRFU|S-ADENOSYLMETHIONINE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 EWLANV 7
EWLAN+
Sbjct: 381 EWLANI 386


>sp|METK_PYRAB|S-ADENOSYLMETHIONINE synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 EWLANV 7
EWLAN+
Sbjct: 381 EWLANI 386


>sp|PSB2_SULAC|PROTEASOME subunit beta 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 WLANVL 8
WLANVL
Sbjct: 92 WLANVL 97


>sp|GATB_SULAC|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Sulfolobus acidocaldarius (strain ATCC

Query: 1 TEWLANVLV 9
TE+ ANVLV
Sbjct: 309 TEYDANVLV 317


>sp|GIN23_SULAC|DNA replication complex GINS protein|Sulfolobus acidocaldarius

Query: 3 WLANVL 8
WLAN+L
Sbjct: 50 WLANIL 55


>sp|SYP_META3|PROLINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 TEWLANVLVT 10
+EW N+L T
Sbjct: 5 SEWYHNILET 14


>sp|PSB2_HYPBU|PROTEASOME subunit beta 2|Hyperthermus butylicus (strain DSM 5456

Query: 2 EWLAN 6
EWLAN
Sbjct: 72 EWLAN 76


>sp|RS4_METS5|SMALL ribosomal subunit protein uS4|Metallosphaera sedula (strain ATCC

Query: 3 WLANVLVT 10
WLA +VT
Sbjct: 42 WLARTIVT 49




157|SequenceR|790|781|YIYVETEWLA

>sp|SYI_THEAC|ISOLEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 YVETEWLA 10
Y+E+EW A
Sbjct: 159 YMESEWFA 166


>sp|MRE11_METKA|DNA double-strand break repair protein|Methanopyrus kandleri (strain

Query: 1 YIYVETEW 8
Y +VE EW
Sbjct: 252 YEFVEVEW 259


>sp|AMPP1_ARCFU|AMP phosphorylase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 IYVETEW 8
IY E EW
Sbjct: 468 IYAEKEW 474


>sp|AMPPA_METB6|AMP phosphorylase|Methanoregula boonei (strain DSM 21154

Query: 2 IYVETEW 8
IY E EW
Sbjct: 471 IYAEREW 477


>sp|AMPPA_METTP|AMP phosphorylase|Methanothrix thermoacetophila (strain DSM 6194

Query: 5 ETEWL 9
ETEWL
Sbjct: 136 ETEWL 140


>sp|AMPPA_METBU|AMP phosphorylase|Methanococcoides burtonii (strain DSM 6242

Query: 5 ETEWL 9
ETEWL
Sbjct: 138 ETEWL 142


>sp|IF2G_METKA|TRANSLATION initiation factor 2 subunit|Methanopyrus kandleri (strain AV19 /

Query: 5 ETEWL 9
ETEWL
Sbjct: 78 ETEWL 82


>sp|RS5_METMJ|SMALL ribosomal subunit protein uS5|Methanoculleus marisnigri (strain

Query: 3 YVETEWL 9
YV+ EW+
Sbjct: 3 YVQEEWI 9


>sp|SYI_THEVO|ISOLEUCINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 YVETEW 8
Y+E+EW
Sbjct: 159 YIESEW 164


>sp|SYI_PICTO|ISOLEUCINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 3 YVETEWLA 10
Y+E+EW A
Sbjct: 160 YMESEWWA 167


>sp|TOP6B_PYRAE|TYPE 2 DNA topoisomerase 6|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 IYVETEWLA 10
+Y+E WLA
Sbjct: 171 VYLEGNWLA 179


>sp|AATB_PYRFU|A-TYPE ATP synthase subunit B|Pyrococcus furiosus (strain ATCC 43587

Query: 2 IYVETEW 8
+ +ETEW
Sbjct: 30 VEIETEW 36




158|SequenceR|795|786|EERHEYIYVE

>sp|Y1715_METAC|UPF0280 protein MA_1715|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 EERHEYI 7
E RHEYI
Sbjct: 244 EVRHEYI 250


>sp|DP2S_THEAC|DNA polymerase II small subunit|Thermoplasma acidophilum (strain ATCC

Query: 1 EERHEYIYV 9
EE+HE +YV
Sbjct: 225 EEKHEPVYV 233


>sp|Y1451_METJA|UNCHARACTERIZED protein MJ1451|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EERHEYIYVE 10
EE H+YI ++
Sbjct: 301 EEMHKYIIIK 310


>sp|PIMT_META3|PROTEIN-L-ISOASPARTATE O-methyltransferase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 ERHEYIYVE 10
E H+Y YV+
Sbjct: 40 ELHDYAYVD 48


>sp|TF2B_SULTO|TRANSCRIPTION initiation factor IIB|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 EERHEYIYVE 10
EER EYI E
Sbjct: 23 EERGEYICTE 32




159|SequenceR|800|791|ILKQFEERHE

>sp|AGLI_HALVD|GLYCOSYLTRANSFERASE AglI|Haloferax volcanii (strain ATCC 29605

Query: 1 ILKQFEERHE 10
+++QFE HE
Sbjct: 55 VIRQFEREHE 64


>sp|APGM_METLZ|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanocorpusculum labreanum (strain ATCC

Query: 1 ILKQFEERHE 10
+ + FEE+HE
Sbjct: 236 VYETFEEKHE 245


>sp|Y1039_PYRHO|UNCHARACTERIZED ABC transporter extracellular-binding protein|Pyrococcus

Query: 1 ILKQFEERH 9
+LK FE++H
Sbjct: 66 VLKAFEKQH 74


>sp|DNLI_HALSA|DNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 ILKQFEERHE 10
ILK+F +H+
Sbjct: 320 ILKRFRRKHD 329


>sp|DNLI_HALS3|DNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 1 ILKQFEERHE 10
ILK+F +H+
Sbjct: 320 ILKRFRRKHD 329


>sp|RLME_METBF|RIBOSOMAL RNA large subunit methyltransferase|Methanosarcina barkeri

Query: 2 LKQFEERH 9
LKQ ERH
Sbjct: 26 LKQINERH 33


>sp|SUCD1_ARCFU|SUCCINATE--COA ligase [ADP-forming] subunit alpha|Archaeoglobus fulgidus (strain

Query: 1 ILKQFEERHE 10
+LK FEE E
Sbjct: 194 VLKMFEEDEE 203


>sp|PUR8_PYRHO|ADENYLOSUCCINATE lyase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 ILKQFEERH 9
ILKQ E+H
Sbjct: 131 ILKQLAEKH 139


>sp|TRM1_METJA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanocaldococcus

Query: 1 ILKQFEERHE 10
I+K+FEE +E
Sbjct: 252 IIKKFEEGYE 261


>sp|FBPAP_THEON|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Thermococcus onnurineus (strain NA1)

Query: 1 ILKQFEERHE 10
+LK+ EER E
Sbjct: 363 VLKKLEERFE 372


>sp|Y951_METJA|UNCHARACTERIZED protein MJ0951|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ILKQFEER 8
ILK+FE+R
Sbjct: 267 ILKRFEDR 274


>sp|TYW31_PYRAB|TRNA(PHE) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-

Query: 2 LKQFEERHE 10
LK+FEER E
Sbjct: 184 LKRFEERIE 192


>sp|EF1A_THESM|ELONGATION factor 1-alpha|Thermococcus sibiricus (strain DSM 12597

Query: 1 ILKQFEERHE 10
I+K+FEE E
Sbjct: 38 IIKKFEEMGE 47


>sp|EF1A_THECE|ELONGATION factor 1-alpha|Thermococcus celer

Query: 1 ILKQFEERHE 10
I+K+FEE E
Sbjct: 38 IIKKFEEMGE 47


>sp|GCSPB_THEAC|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermoplasma

Query: 1 ILKQFEERHE 10
I K FE+ HE
Sbjct: 147 IKKYFEDLHE 156




160|SequenceR|806|796|PSLLLQILKQF

>sp|PROA_HALWD|GAMMA-GLUTAMYL phosphate reductase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 PSLLLQILKQF 11
PS L Q++KQ+
Sbjct: 277 PSFLSQMMKQY 287


>sp|Y935_METJA|UNCHARACTERIZED protein MJ0935|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 SLLLQILKQF 11
SLLL+ILK +
Sbjct: 118 SLLLEILKHY 127


>sp|AOCD_METTH|ORNITHINE cyclodeaminase|Methanothermobacter thermautotrophicus (strain

Query: 1 PSLLLQILKQF 11
PSLL QIL +
Sbjct: 58 PSLLNQILDEL 68


>sp|TFE_HYPBU|TRANSCRIPTION factor E|Hyperthermus butylicus (strain DSM 5456

Query: 3 LLLQILKQF 11
L +QILKQ+
Sbjct: 151 LRIQILKQY 159




THE END