1|Sequence|1|10|MAAAMTFCRL
>sp|R1A_CVHN1|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N1)
Query: 4 AMTFCRL 10
+MT+CR+
Sbjct: 3054 SMTYCRV 3060
>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)
Query: 4 AMTFCRL 10
+MT+CR+
Sbjct: 3054 SMTYCRV 3060
>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)
Query: 4 AMTFCRL 10
+MT+CR+
Sbjct: 3024 SMTYCRV 3030
>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)
Query: 4 AMTFCRL 10
+MT+CR+
Sbjct: 3004 SMTYCRV 3010
>sp|R1A_CVHN2|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N2)
Query: 4 AMTFCRL 10
+MT+CR+
Sbjct: 3024 SMTYCRV 3030
>sp|R1A_CVHN5|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N5)
Query: 4 AMTFCRL 10
+MT+CR+
Sbjct: 3004 SMTYCRV 3010
>sp|POLG_WNV|GENOME polyprotein|West Nile virus (WNV)
Query: 2 AAAMTFC 8
AAA+ FC
Sbjct: 2384 AAALLFC 2390
>sp|POLG_YEFVC|GENOME polyprotein|Yellow fever virus (isolate Ivory
Query: 3 AAMTFC 8
AAM FC
Sbjct: 1296 AAMLFC 1301
>sp|B17_VARV|PROTEIN B17|Variola virus
Query: 5 MTFCRL 10
+TFC+L
Sbjct: 167 VTFCKL 172
>sp|B17_VAR67|PROTEIN B17|Variola virus (isolate Human/India/Ind3/1967) (VARV)
Query: 5 MTFCRL 10
+TFC+L
Sbjct: 167 VTFCKL 172
>sp|B17_VACCC|PROTEIN B17|Vaccinia virus (strain Copenhagen) (VACV)
Query: 5 MTFCRL 10
+TFC+L
Sbjct: 167 VTFCKL 172
2|Sequence|6|15|TFCRLLNRCG
>sp|SCAF_HHV7J|CAPSID scaffolding protein|Human herpesvirus 7 (strain JI)
Query: 1 TFCRLLN 7
TFC LLN
Sbjct: 309 TFCSLLN 315
>sp|OBP_VZVO|REPLICATION origin-binding protein|Varicella-zoster virus (strain Oka vaccine)
Query: 4 RLLNRC 9
RLLNRC
Sbjct: 182 RLLNRC 187
>sp|OBP_VZVD|REPLICATION origin-binding protein|Varicella-zoster virus (strain Dumas)
Query: 4 RLLNRC 9
RLLNRC
Sbjct: 182 RLLNRC 187
>sp|AP3A_SARS|ORF3A protein|Severe acute respiratory syndrome coronavirus
Query: 3 CRLLNRC 9
CR++ RC
Sbjct: 121 CRIIMRC 127
>sp|L_HRSVB|RNA-DIRECTED RNA polymerase L|Human respiratory syncytial virus B
Query: 2 FCRLLNRC 9
+C +NRC
Sbjct: 1961 YCSSVNRC 1968
>sp|PG189_VARV|ANKYRIN repeat protein OPG189|Variola virus
Query: 3 CRLLNRC 9
C LL+RC
Sbjct: 171 CTLLHRC 177
>sp|PG189_VAR67|ANKYRIN repeat protein OPG189|Variola virus (isolate Human/India/Ind3/1967)
Query: 3 CRLLNRC 9
C LL+RC
Sbjct: 171 CTLLHRC 177
>sp|NSP1_ROTHU|NON-STRUCTURAL protein 1|Rotavirus A (isolate RVA/Human/India/116E/1986/G9P8[11])
Query: 1 TFCRLLNRC 9
T CR+ RC
Sbjct: 285 TRCRIFTRC 293
>sp|ICP22_HHV11|TRANSCRIPTIONAL regulator ICP22|Human herpesvirus 1 (strain 17)
Query: 1 TFCRLLNRCG 10
T+CRLL G
Sbjct: 239 TWCRLLQVSG 248
>sp|PG189_VACCC|ANKYRIN repeat protein OPG189|Vaccinia virus (strain Copenhagen) (VACV)
Query: 3 CRLLNRC 9
C LL+RC
Sbjct: 171 CTLLHRC 177
>sp|PG189_MONPV|ANKYRIN repeat protein OPG189|Monkeypox virus (MPXV)
Query: 3 CRLLNRC 9
C LL+RC
Sbjct: 174 CTLLHRC 180
>sp|VE2_HPV16|REGULATORY protein E2|Human papillomavirus type 16
Query: 1 TFCRLLNRC 9
T C+ LN C
Sbjct: 3 TLCQRLNVC 11
>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)
Query: 1 TFCRLLNR 8
T CRLL R
Sbjct: 6264 TSCRLLQR 6271
>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)
Query: 1 TFCRLLNR 8
T CRLL R
Sbjct: 6294 TSCRLLQR 6301
>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)
Query: 1 TFCRLLNR 8
T CRLL R
Sbjct: 6244 TSCRLLQR 6251
>sp|POLG_SAFV|GENOME polyprotein|Saffold virus (SafV) (Human TMEV-like
Query: 1 TFCRLLNRCG 10
T CRLL++ G
Sbjct: 1461 TDCRLLHKRG 1470
>sp|YVAK_VACCC|UNCHARACTERIZED 7.5 kDa protein|Vaccinia virus (strain Copenhagen) (VACV)
Query: 2 FCRLLNRC 9
F RLLN C
Sbjct: 32 FTRLLNPC 39
>sp|SPIKE_SARS2|SPIKE glycoprotein|Severe acute respiratory syndrome coronavirus
Query: 1 TFCRLLNR 8
+FC LNR
Sbjct: 758 SFCTQLNR 765
>sp|TRX2_HHV6Z|TRIPLEX capsid protein 2|Human herpesvirus 6B (strain Z29)
Query: 1 TFCRLLN 7
T C+L+N
Sbjct: 19 TLCKLMN 25
>sp|TRX2_HHV6U|TRIPLEX capsid protein 2|Human herpesvirus 6A (strain Uganda-1102)
Query: 1 TFCRLLN 7
T C+L+N
Sbjct: 19 TLCKLMN 25
>sp|NCAP_EBOZM|NUCLEOPROTEIN ebolavirus (strain Mayinga-76) (ZEBOV)
Query: 2 FCRLLNRCG 10
F RLLN G
Sbjct: 296 FARLLNLSG 304
>sp|NCAP_EBOZ5|NUCLEOPROTEIN ebolavirus (strain Kikwit-95) (ZEBOV)
Query: 2 FCRLLNRCG 10
F RLLN G
Sbjct: 296 FARLLNLSG 304
>sp|NCAP_EBOSU|NUCLEOPROTEIN ebolavirus (strain Human/Uganda/Gulu/2000) (SEBOV)
Query: 2 FCRLLNRCG 10
F RLLN G
Sbjct: 296 FARLLNLSG 304
>sp|NCAP_EBOSB|NUCLEOPROTEIN ebolavirus (strain Boniface-76) (SEBOV)
Query: 2 FCRLLNRCG 10
F RLLN G
Sbjct: 296 FARLLNLSG 304
>sp|NCAP_EBORR|NUCLEOPROTEIN ebolavirus (strain Reston-89) (REBOV)
Query: 2 FCRLLNRCG 10
F RLLN G
Sbjct: 296 FARLLNLSG 304
>sp|NCAP_EBORE|NUCLEOPROTEIN ebolavirus (strain Philippines-96) (REBOV)
Query: 2 FCRLLNRCG 10
F RLLN G
Sbjct: 296 FARLLNLSG 304
>sp|NCAP_EBOG4|NUCLEOPROTEIN ebolavirus (strain Gabon-94) (ZEBOV)
Query: 2 FCRLLNRCG 10
F RLLN G
Sbjct: 296 FARLLNLSG 304
>sp|SPIKE_SARS|SPIKE glycoprotein|Severe acute respiratory syndrome coronavirus
Query: 1 TFCRLLNR 8
+FC LNR
Sbjct: 740 SFCTQLNR 747
>sp|PG031_VAR67|PROTEIN C4|Variola virus (isolate Human/India/Ind3/1967) (VARV)
Query: 1 TFCRLLNRCG 10
T C L+N+ G
Sbjct: 190 TICVLVNKSG 199
>sp|VE2_HPV51|REGULATORY protein E2|Human papillomavirus 51
Query: 1 TFCRLLNRC 9
T C LN C
Sbjct: 3 TLCHRLNVC 11
>sp|L_VSNJH|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis New Jersey virus
Query: 4 RLLNRCG 10
R+L +CG
Sbjct: 273 RILEQCG 279
>sp|VE1_HPV09|REPLICATION protein E1|Human papillomavirus 9
Query: 1 TFCRLLN 7
T CRLL+
Sbjct: 244 TVCRLLS 250
>sp|L_HRSVA|RNA-DIRECTED RNA polymerase L|Human respiratory syncytial virus A
Query: 2 FCRLLNRC 9
+C +N+C
Sbjct: 1961 YCSSVNKC 1968
>sp|L_HRSV|RNA-DIRECTED RNA polymerase L|Human respiratory syncytial virus
Query: 2 FCRLLNRC 9
+C +N+C
Sbjct: 1961 YCSSVNKC 1968
>sp|GLYCO_RABVH|GLYCOPROTEIN virus (strain HEP-Flury) (RABV)
Query: 1 TFCRLLNR 8
T CR +NR
Sbjct: 478 TCCRRVNR 485
>sp|VU4_HHV6Z|PROTEIN U4|Human herpesvirus 6B (strain Z29)
Query: 2 FCRLLNRC 9
F RLL +C
Sbjct: 115 FYRLLTKC 122
>sp|VU4_HHV6U|PROTEIN U4|Human herpesvirus 6A (strain Uganda-1102)
Query: 2 FCRLLNRC 9
F RLL +C
Sbjct: 115 FYRLLTKC 122
>sp|GLYCO_RABVT|GLYCOPROTEIN virus (isolate Human/Algeria/1991) (RABV)
Query: 1 TFCRLLNR 8
T CR +NR
Sbjct: 478 TCCRRVNR 485
>sp|GLYCO_RABVV|GLYCOPROTEIN virus (strain Vnukovo-32) (RABV)
Query: 1 TFCRLLNR 8
T CR +NR
Sbjct: 478 TCCRRVNR 485
>sp|GLYCO_RABVS|GLYCOPROTEIN virus (strain SAD B19)
Query: 1 TFCRLLNR 8
T CR +NR
Sbjct: 478 TCCRRVNR 485
>sp|GLYCO_RABVE|GLYCOPROTEIN virus (strain ERA) (RABV)
Query: 1 TFCRLLNR 8
T CR +NR
Sbjct: 478 TCCRRVNR 485
>sp|TEG6_VZVO|TEGUMENT protein UL55 homolog|Varicella-zoster virus (strain Oka vaccine)
Query: 2 FCRLLN 7
FC LLN
Sbjct: 96 FCSLLN 101
>sp|TEG6_VZVD|TEGUMENT protein UL55 homolog|Varicella-zoster virus (strain Dumas) (HHV-3)
Query: 2 FCRLLN 7
FC LLN
Sbjct: 96 FCSLLN 101
>sp|LT_POVK3|LARGE T antigen|KI polyomavirus (isolate Stockholm 380)
Query: 5 LLNRCG 10
LLN CG
Sbjct: 449 LLNLCG 454
>sp|LT_POVKI|LARGE T antigen|KI polyomavirus (isolate Stockholm 350)
Query: 5 LLNRCG 10
LLN CG
Sbjct: 449 LLNLCG 454
>sp|LT_POVK6|LARGE T antigen|KI polyomavirus (isolate Stockholm 60)
Query: 5 LLNRCG 10
LLN CG
Sbjct: 449 LLNLCG 454
3|Sequence|11|20|LNRCGEAARS
>sp|DPOL_VZVD|DNA polymerase catalytic subunit|Varicella-zoster virus (strain Dumas)
Query: 3 RCGEAAR 9
RCGEA R
Sbjct: 1070 RCGEAKR 1076
>sp|DPOL_VZVO|DNA polymerase catalytic subunit|Varicella-zoster virus (strain Oka
Query: 3 RCGEAAR 9
RCGEA R
Sbjct: 1070 RCGEAKR 1076
>sp|B17_VARV|PROTEIN B17|Variola virus
Query: 1 LNRCGEAA 8
LNRC + A
Sbjct: 136 LNRCADHA 143
>sp|B17_VAR67|PROTEIN B17|Variola virus (isolate Human/India/Ind3/1967) (VARV)
Query: 1 LNRCGEAA 8
LNRC + A
Sbjct: 136 LNRCADHA 143
>sp|B17_VACCC|PROTEIN B17|Vaccinia virus (strain Copenhagen) (VACV)
Query: 1 LNRCGEAA 8
LNRC + A
Sbjct: 136 LNRCADHA 143
>sp|POLG_LJUV1|GENOME polyprotein|Ljunganvirus 1 (LV) (Ljungan virus
Query: 1 LNRCGE 6
LN+CG+
Sbjct: 809 LNQCGD 814
4|Sequence|16|25|EAARSLPLGA
>sp|LTP_EBVG|LARGE tegument protein deneddylase|Epstein-Barr virus (strain GD1) (HHV-4)
Query: 1 EAARSLPLGA 10
EAAR L LGA
Sbjct: 1954 EAARGLALGA 1963
>sp|LTP_EBVB9|LARGE tegument protein deneddylase|Epstein-Barr virus (strain B95-8)
Query: 1 EAARSLPLGA 10
EAAR L LGA
Sbjct: 1927 EAARGLALGA 1936
>sp|LTP_EBVA8|LARGE tegument protein deneddylase|Epstein-Barr virus (strain AG876)
Query: 1 EAARSLPLGA 10
EAAR L LGA
Sbjct: 1932 EAARGLALGA 1941
>sp|POLG_CXB1J|GENOME polyprotein|Coxsackievirus B1 (strain Japan)
Query: 4 RSLPLGA 10
RS+P+GA
Sbjct: 2158 RSVPVGA 2164
>sp|POLG_BANV|GENOME polyprotein|Banzi virus (BANV)
Query: 1 EAARSLPL 8
E RSLPL
Sbjct: 2086 EGRRSLPL 2093
>sp|TEG5_HHV11|TEGUMENT protein UL47|Human herpesvirus 1 (strain 17)
Query: 1 EAARSLPLGA 10
E R+LPLG+
Sbjct: 460 ELFRALPLGS 469
>sp|TEG5_HHV1F|TEGUMENT protein UL47|Human herpesvirus 1 (strain F)
Query: 1 EAARSLPLGA 10
E R+LPLG+
Sbjct: 460 ELFRALPLGS 469
5|Sequence|21|30|LPLGARCFGV
>sp|DPOL_HBVA6|PROTEIN P|Hepatitis B virus genotype A1
Query: 1 LPLGARCFGV 10
LP RCFGV
Sbjct: 243 LPSTRRCFGV 252
>sp|DPOL_HBVA4|PROTEIN P|Hepatitis B virus genotype A2
Query: 2 PLGARCFGV 10
P RCFGV
Sbjct: 251 PSTRRCFGV 259
>sp|DPOL_HBVA5|PROTEIN P|Hepatitis B virus genotype A1
Query: 6 RCFGV 10
RCFGV
Sbjct: 255 RCFGV 259
>sp|RL13_HCMVM|MEMBRANE protein RL13|Human cytomegalovirus (strain Merlin) (HHV-5)
Query: 1 LPLGARCF 8
P GA CF
Sbjct: 156 FPRGALCF 163
>sp|PA_I77AD|POLYMERASE acidic protein|Influenza A virus (strain A/Swine/Tennessee/26/1977
Query: 1 LPLGARCF 8
LP G CF
Sbjct: 270 LPCGPPCF 277
>sp|PA_I67A2|POLYMERASE acidic protein|Influenza A virus (strain A/Swine/Wisconsin/1/1967
Query: 1 LPLGARCF 8
LP G CF
Sbjct: 270 LPCGPPCF 277
>sp|PA_I61A1|POLYMERASE acidic protein|Influenza A virus (strain A/Swine/Wisconsin/1/1961
Query: 1 LPLGARCF 8
LP G CF
Sbjct: 270 LPCGPPCF 277
>sp|HEMA_I85A6|HEMAGGLUTININ A virus (strain A/Starling/Victoria/5156/1985
Query: 3 LGARCF 8
LGA CF
Sbjct: 533 LGASCF 538
>sp|HEMA_I85A3|HEMAGGLUTININ A virus (strain A/Chicken/Victoria/1/1985
Query: 3 LGARCF 8
LGA CF
Sbjct: 533 LGASCF 538
>sp|PG057_VACCP|ENVELOPE phospholipase OPG057|Vaccinia virus (strain L-IVP) (VACV)
Query: 1 LPLGARC 7
+P GA+C
Sbjct: 7 VPAGAKC 13
>sp|PG057_VACCI|ENVELOPE phospholipase OPG057|Vaccinia virus (strain IHD-J) (VACV)
Query: 1 LPLGARC 7
+P GA+C
Sbjct: 7 VPAGAKC 13
>sp|PG057_VACCC|ENVELOPE phospholipase OPG057|Vaccinia virus (strain Copenhagen) (VACV)
Query: 1 LPLGARC 7
+P GA+C
Sbjct: 7 VPAGAKC 13
>sp|PG057_VACCA|ENVELOPE phospholipase OPG057|Vaccinia virus (strain Ankara) (VACV)
Query: 1 LPLGARC 7
+P GA+C
Sbjct: 7 VPAGAKC 13
>sp|PG057_MONPV|ENVELOPE phospholipase OPG057|Monkeypox virus (MPXV)
Query: 1 LPLGARC 7
+P GA+C
Sbjct: 7 VPAGAKC 13
>sp|L_MABVR|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ravn-87)
Query: 6 RCFGV 10
RC+GV
Sbjct: 657 RCYGV 661
>sp|L_MABVP|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Popp-67)
Query: 6 RCFGV 10
RC+GV
Sbjct: 657 RCYGV 661
>sp|L_MABVO|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ozolin-75)
Query: 6 RCFGV 10
RC+GV
Sbjct: 657 RCYGV 661
>sp|L_MABVM|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Musoke-80)
Query: 6 RCFGV 10
RC+GV
Sbjct: 657 RCYGV 661
>sp|L_MABVA|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Angola/2005)
Query: 6 RCFGV 10
RC+GV
Sbjct: 657 RCYGV 661
>sp|L_EBOZM|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)
Query: 6 RCFGV 10
RC+GV
Sbjct: 654 RCYGV 658
>sp|L_EBOZ5|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)
Query: 6 RCFGV 10
RC+GV
Sbjct: 654 RCYGV 658
>sp|PG057_VAR67|ENVELOPE phospholipase OPG057|Variola virus (isolate
Query: 2 PLGARC 7
P GA+C
Sbjct: 8 PAGAKC 13
>sp|ENV_SFV3L|ENVELOPE glycoprotein gp130|Simian foamy virus type 3
Query: 6 RCFGV 10
+CFGV
Sbjct: 831 KCFGV 835
>sp|ENV_SFV1|ENVELOPE glycoprotein gp130|Simian foamy virus type 1
Query: 6 RCFGV 10
+CFGV
Sbjct: 838 KCFGV 842
>sp|R1AB_SARS2|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus
Query: 3 LGARCF 8
LGA CF
Sbjct: 5230 LGAGCF 5235
>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus
Query: 3 LGARCF 8
LGA CF
Sbjct: 5207 LGAGCF 5212
>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)
Query: 3 LGARCF 8
LGA CF
Sbjct: 5203 LGAGCF 5208
>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)
Query: 3 LGARCF 8
LGA CF
Sbjct: 5241 LGAGCF 5246
>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)
Query: 3 LGARCF 8
LGA CF
Sbjct: 5261 LGAGCF 5266
>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)
Query: 3 LGARCF 8
LGA CF
Sbjct: 5291 LGAGCF 5296
>sp|DPOL_EBVG|DNA polymerase catalytic subunit|Epstein-Barr virus (strain GD1)
Query: 1 LPLGARCFGV 10
+P+G CF
Sbjct: 895 VPMGELCFST 904
>sp|DPOL_EBVB9|DNA polymerase catalytic subunit|Epstein-Barr virus (strain B95-8)
Query: 1 LPLGARCFGV 10
+P+G CF
Sbjct: 895 VPMGELCFST 904
>sp|DPOL_EBVA8|DNA polymerase catalytic subunit|Epstein-Barr virus (strain AG876)
Query: 1 LPLGARCFGV 10
+P+G CF
Sbjct: 895 VPMGELCFST 904
6|Sequence|26|35|RCFGVRVSPT
>sp|VP6_CTFVL|UNCHARACTERIZED protein VP6|Colorado tick fever virus (strain
Query: 1 RCFGVRVSP 9
RC G+R+ P
Sbjct: 689 RCSGLRLLP 697
>sp|L_MABVR|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ravn-87)
Query: 1 RCFGVR 6
RC+GV+
Sbjct: 657 RCYGVK 662
>sp|L_MABVP|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Popp-67)
Query: 1 RCFGVR 6
RC+GV+
Sbjct: 657 RCYGVK 662
>sp|L_MABVO|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ozolin-75)
Query: 1 RCFGVR 6
RC+GV+
Sbjct: 657 RCYGVK 662
>sp|L_MABVM|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Musoke-80)
Query: 1 RCFGVR 6
RC+GV+
Sbjct: 657 RCYGVK 662
>sp|L_MABVA|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Angola/2005)
Query: 1 RCFGVR 6
RC+GV+
Sbjct: 657 RCYGVK 662
>sp|L_EBOZM|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)
Query: 1 RCFGVR 6
RC+GV+
Sbjct: 654 RCYGVK 659
>sp|L_EBOZ5|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)
Query: 1 RCFGVR 6
RC+GV+
Sbjct: 654 RCYGVK 659
>sp|AN_EBVA8|SHUTOFF alkaline exonuclease|Epstein-Barr virus (strain AG876) (HHV-4)
Query: 1 RCFGVRVSPT 10
R FG +SPT
Sbjct: 185 RQFGFMISPT 194
>sp|LTP_HCMVT|LARGE tegument protein deneddylase|Human cytomegalovirus (strain Towne)
Query: 3 FGVRVSP 9
FGV++SP
Sbjct: 188 FGVQLSP 194
>sp|LTP_HCMVM|LARGE tegument protein deneddylase|Human cytomegalovirus (strain Merlin)
Query: 3 FGVRVSP 9
FGV++SP
Sbjct: 188 FGVQLSP 194
>sp|LTP_HCMVA|LARGE tegument protein deneddylase|Human cytomegalovirus (strain AD169)
Query: 3 FGVRVSP 9
FGV++SP
Sbjct: 188 FGVQLSP 194
>sp|AN_EBVG|SHUTOFF alkaline exonuclease|Epstein-Barr virus (strain GD1) (HHV-4)
Query: 1 RCFGVRVSPT 10
R FG +SPT
Sbjct: 185 RQFGFMISPT 194
>sp|AN_EBVB9|SHUTOFF alkaline exonuclease|Epstein-Barr virus (strain B95-8) (HHV-4)
Query: 1 RCFGVRVSPT 10
R FG +SPT
Sbjct: 185 RQFGFMISPT 194
>sp|POLG_COSAA|GENOME polyprotein|Cosavirus A (isolate Human/Pakistan/0553/-) (HCoSV-A)
Query: 2 CFGVRVSP 9
C+G+ V+P
Sbjct: 358 CYGMTVTP 365
>sp|PG095_VARV|ENTRY-FUSION complex associated protein OPG095|Variola virus
Query: 2 CFGVRVSPT 10
C+G SPT
Sbjct: 136 CYGAPGSPT 144
>sp|PG095_VAR67|ENTRY-FUSION complex associated protein OPG095|Variola virus (isolate
Query: 2 CFGVRVSPT 10
C+G SPT
Sbjct: 136 CYGAPGSPT 144
>sp|PG095_VACCC|ENTRY-FUSION complex associated protein OPG095|Vaccinia virus (strain
Query: 2 CFGVRVSPT 10
C+G SPT
Sbjct: 136 CYGAPGSPT 144
>sp|PG095_VACCA|ENTRY-FUSION complex associated protein OPG095|Vaccinia virus (strain Ankara)
Query: 2 CFGVRVSPT 10
C+G SPT
Sbjct: 136 CYGAPGSPT 144
>sp|PG095_MONPV|ENTRY-FUSION complex associated protein OPG095|Monkeypox virus (MPXV)
Query: 2 CFGVRVSPT 10
C+G SPT
Sbjct: 136 CYGAPGSPT 144
>sp|L_EBOSU|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)
Query: 1 RCFGVR 6
+C+GVR
Sbjct: 655 QCYGVR 660
>sp|L_EBOSM|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Maleo-79) (SEBOV)
Query: 1 RCFGVR 6
+C+GVR
Sbjct: 655 QCYGVR 660
>sp|GP_DUGBA|ENVELOPMENT polyprotein|Dugbe virus (isolate ArD44313) (DUGV)
Query: 2 CFGVRVSPT 10
C GV + PT
Sbjct: 1396 CTGVELEPT 1404
>sp|L_EBORR|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Reston-89) (REBOV)
Query: 2 CFGVR 6
C+GVR
Sbjct: 655 CYGVR 659
>sp|L_EBORE|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Philippines-96) (REBOV)
Query: 2 CFGVR 6
C+GVR
Sbjct: 655 CYGVR 659
>sp|VL1_HPV13|MAJOR capsid protein L1|Human papillomavirus 13
Query: 1 RCFGVRVSP 9
+C GV V P
Sbjct: 171 QCTGVNVQP 179
>sp|POLN_HEVCT|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 4
Query: 2 CFGVRVSP 9
C G RV P
Sbjct: 972 CVGCRVEP 979
7|Sequence|31|40|RVSPTGEKVT
>sp|CAP3_ADE12|PRE-HEXON-LINKING protein IIIa|Human adenovirus A serotype 12
Query: 1 RVSPTGEKV 9
R +PT EKV
Sbjct: 73 RTNPTHEKV 81
>sp|POL_HV2BE|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 RVSPTGEKVT 10
RV PTG++ +
Sbjct: 434 RVGPTGKEAS 443
>sp|CAP3_ADE02|PRE-HEXON-LINKING protein IIIa|Human adenovirus C serotype 2
Query: 1 RVSPTGEKV 9
R +PT EKV
Sbjct: 65 RANPTHEKV 73
>sp|CAP3_ADE05|PRE-HEXON-LINKING protein IIIa|Human adenovirus C serotype 5
Query: 1 RVSPTGEKV 9
R +PT EKV
Sbjct: 65 RANPTHEKV 73
>sp|VE2_HPV25|REGULATORY protein E2|Human papillomavirus 25
Query: 1 RVSPTG 6
R+SPTG
Sbjct: 227 RLSPTG 232
8|Sequence|36|45|GEKVTHTGQV
>sp|POLG_HRV1A|GENOME polyprotein|Human rhinovirus 1A (HRV-1A)
Query: 1 GEKVTHTGQ 9
G K+TH G+
Sbjct: 212 GYKLTHPGE 220
>sp|VP5_CTFVL|UNCHARACTERIZED protein VP5|Colorado tick fever virus (strain
Query: 4 VTHTGQ 9
VTH GQ
Sbjct: 199 VTHNGQ 204
>sp|VIF_HV2EH|VIRION infectivity factor|Human immunodeficiency virus type 2
Query: 6 HTGQV 10
HTGQV
Sbjct: 141 HTGQV 145
>sp|VP3_ROTYO|PROTEIN VP3|Rotavirus A (strain RVA/Human/Japan/YO/1977/G3P1A[8]) (RV-A)
Query: 1 GEKVTHTG 8
G K+TH G
Sbjct: 121 GWKLTHVG 128
>sp|VE6_HPV18|PROTEIN E6|Human papillomavirus type 18
Query: 2 EKVTHTG 8
EK+T+TG
Sbjct: 91 EKLTNTG 97
>sp|L_LYCVA|RNA-DIRECTED RNA polymerase L|Lymphocytic choriomeningitis virus (strain
Query: 1 GEKVTHT 7
GEK+T+T
Sbjct: 924 GEKLTNT 930
>sp|TRX1_HHV2H|TRIPLEX capsid protein 1|Human herpesvirus 2 (strain HG52)
Query: 2 EKVTHTGQ 9
++ THTG
Sbjct: 271 QEATHTGH 278
>sp|GLYCO_DUVV|GLYCOPROTEIN virus (DUVV)
Query: 1 GEKVTHTGQV 10
G+K T GQ+
Sbjct: 216 GKKATKDGQL 225
>sp|VIF_HV1ND|VIRION infectivity factor|Human immunodeficiency virus type 1
Query: 1 GEKVTHTGQ 9
GEK H GQ
Sbjct: 75 GEKEWHLGQ 83
>sp|TRX1_HHV2G|TRIPLEX capsid protein 1|Human herpesvirus 2 (strain G)
Query: 2 EKVTHTGQ 9
++ THTG
Sbjct: 271 QEATHTGH 278
>sp|R1A_CVH22|REPLICASE polyprotein 1a|Human coronavirus 229E (HCoV-229E)
Query: 1 GEKVTHTG 8
G+K+ H G
Sbjct: 937 GKKIKHEG 944
>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)
Query: 1 GEKVTHTG 8
G+K+ H G
Sbjct: 937 GKKIKHEG 944
9|Sequence|41|50|HTGQVYDDKD
>sp|PG086_VARV|ENTRY-FUSION complex protein OPG086|Variola virus
Query: 1 HTGQVYDDKD 10
HT +YDD D
Sbjct: 90 HTFNLYDDND 99
>sp|PG086_VAR67|ENTRY-FUSION complex protein OPG086|Variola virus (isolate
Query: 1 HTGQVYDDKD 10
HT +YDD D
Sbjct: 90 HTFNLYDDND 99
>sp|PG086_VACCT|ENTRY-FUSION complex protein OPG086|Vaccinia virus (strain Tian Tan)
Query: 1 HTGQVYDDKD 10
HT +YDD D
Sbjct: 90 HTFNLYDDND 99
>sp|PG086_VACCC|ENTRY-FUSION complex protein OPG086|Vaccinia virus (strain Copenhagen) (VACV)
Query: 1 HTGQVYDDKD 10
HT +YDD D
Sbjct: 90 HTFNLYDDND 99
>sp|PG005_MONPV|PROTEIN OPG005|Monkeypox virus (MPXV)
Query: 2 TGQVYDDK 9
TG+V++DK
Sbjct: 117 TGRVFNDK 124
>sp|L_RABVS|LARGE structural protein|Rabies virus (strain SAD B19)
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|L_RABVR|LARGE structural protein|Rabies virus (strain China/MRV) (RABV)
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|L_RABVP|LARGE structural protein|Rabies virus (strain Pasteur vaccins
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|L_RABVN|LARGE structural protein|Rabies virus (strain Nishigahara RCEH)
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|L_RABVI|LARGE structural protein|Rabies virus (strain India) (RABV)
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|L_RABVH|LARGE structural protein|Rabies virus (strain HEP-Flury) (RABV)
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|L_RABVE|LARGE structural protein|Rabies virus (strain ERA) (RABV)
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|L_RABVD|LARGE structural protein|Rabies virus (strain China/DRV) (RABV)
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|L_RABVB|LARGE structural protein|Rabies virus (strain silver-haired
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 6 GEVYDD 11
>sp|L_RABVA|LARGE structural protein|Rabies virus (strain PM1503/AVO1) (RABV)
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|L_ABLVB|LARGE structural protein|Australian bat lyssavirus (isolate
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|L_ABLVH|LARGE structural protein|Australian bat lyssavirus (isolate
Query: 3 GQVYDD 8
G+VYDD
Sbjct: 5 GEVYDD 10
>sp|R1A_MERS1|REPLICASE polyprotein 1a|Middle East respiratory syndrome-related coronavirus
Query: 1 HTGQVYDD 8
H G VYD+
Sbjct: 2824 HVGGVYDN 2831
>sp|POLG_COSAA|GENOME polyprotein|Cosavirus A (isolate Human/Pakistan/0553/-) (HCoSV-A)
Query: 1 HTGQVYDD 8
+TGQ+ DD
Sbjct: 1791 NTGQILDD 1798
>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related coronavirus
Query: 1 HTGQVYDD 8
H G VYD+
Sbjct: 2824 HVGGVYDN 2831
>sp|K81_HHV8P|PROTEIN K8.1|Human herpesvirus 8 type P
Query: 2 TGQVYDD 8
+GQVY D
Sbjct: 43 SGQVYQD 49
>sp|NCAP_MEASI|NUCLEOPROTEIN virus (strain IP-3-Ca) (MeV)
Query: 2 TGQVYDDKD 10
T +VY+D+D
Sbjct: 514 TPRVYNDRD 522
>sp|TRM1_HCMVA|TRIPARTITE terminase subunit 1|Human cytomegalovirus (strain AD169) (HHV-5)
Query: 1 HTGQVYDDKD 10
H G +Y KD
Sbjct: 746 HEGSLYKSKD 755
>sp|NCAP_MEASY|NUCLEOPROTEIN virus (strain Yamagata-1) (MeV)
Query: 2 TGQVYDDKD 10
T +VY+D+D
Sbjct: 514 TPRVYNDRD 522
>sp|TRM1_HCMVM|TRIPARTITE terminase subunit 1|Human cytomegalovirus (strain Merlin) (HHV-5)
Query: 1 HTGQVYDDKD 10
H G +Y KD
Sbjct: 746 HEGSLYKSKD 755
>sp|NCAP_MEASC|NUCLEOPROTEIN virus (strain Ichinose-B95a) (MeV)
Query: 2 TGQVYDDKD 10
T +VY+D+D
Sbjct: 514 TPRVYNDRD 522
>sp|POLN_EEVV3|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain
Query: 2 TGQVYD 7
TG+VYD
Sbjct: 1114 TGRVYD 1119
>sp|POLN_EEVVT|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain
Query: 2 TGQVYD 7
TG+VYD
Sbjct: 1114 TGRVYD 1119
>sp|POLN_EEVVP|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain
Query: 2 TGQVYD 7
TG+VYD
Sbjct: 1114 TGRVYD 1119
>sp|POLN_EEVVM|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain
Query: 2 TGQVYD 7
TG+VYD
Sbjct: 1114 TGRVYD 1119
>sp|POLG_TBEVW|GENOME polyprotein|Tick-borne encephalitis virus European subtype
Query: 2 TGQVYD 7
TG VYD
Sbjct: 408 TGHVYD 413
>sp|POLG_TBEVS|GENOME polyprotein|Tick-borne encephalitis virus Far Eastern
Query: 2 TGQVYD 7
TG VYD
Sbjct: 408 TGHVYD 413
>sp|POLG_TBEVH|GENOME polyprotein|Tick-borne encephalitis virus (strain Hypr)
Query: 2 TGQVYD 7
TG VYD
Sbjct: 408 TGHVYD 413
>sp|POLG_OHFV|GENOME polyprotein|Omsk hemorrhagic fever virus (OHFV)
Query: 2 TGQVYD 7
TG VYD
Sbjct: 408 TGHVYD 413
>sp|POLG_LANVY|GENOME polyprotein|Langat virus (strain Yelantsev)
Query: 2 TGQVYD 7
TG VYD
Sbjct: 408 TGHVYD 413
>sp|POLG_LANVT|GENOME polyprotein|Langat virus (strain TP21)
Query: 2 TGQVYD 7
TG VYD
Sbjct: 408 TGHVYD 413
>sp|POLG_EC11G|GENOME polyprotein|Echovirus 11 (strain Gregory)
Query: 1 HTGQVY 6
H GQ+Y
Sbjct: 784 HMGQIY 789
>sp|PG005_VACCC|PROTEIN OPG005|Vaccinia virus (strain Copenhagen) (VACV)
Query: 2 TGQVYDDK 9
+G+V++DK
Sbjct: 145 SGRVFNDK 152
>sp|MC007_MCV1|PROTEIN MC007|Molluscum contagiosum virus subtype 1
Query: 2 TGQVYDD 8
TG++YD+
Sbjct: 200 TGELYDE 206
>sp|PG047_VACCA|IMMUNE evasion protein OPG047|Vaccinia virus (strain Ankara) (VACV)
Query: 1 HTGQVYDD 8
+TG+VY D
Sbjct: 82 YTGKVYID 89
>sp|GB_HHV6U|ENVELOPE glycoprotein B|Human herpesvirus 6A (strain Uganda-1102)
Query: 2 TGQVYDDK 9
+GQV DD+
Sbjct: 770 SGQVSDDE 777
>sp|PG047_VACCC|IMMUNE evasion protein OPG047|Vaccinia virus (strain Copenhagen) (VACV)
Query: 1 HTGQVYDD 8
+TG+VY D
Sbjct: 82 YTGKVYID 89
>sp|GB_HHV6G|ENVELOPE glycoprotein B|Human herpesvirus 6A (strain GS)
Query: 2 TGQVYDDK 9
+GQV DD+
Sbjct: 770 SGQVSDDE 777
>sp|PG047_MONPV|IMMUNE evasion protein OPG047|Monkeypox virus (MPXV)
Query: 1 HTGQVYDD 8
+TG+VY D
Sbjct: 82 YTGKVYID 89
>sp|ICP27_HCMVM|MRNA export factor ICP27 homolog|Human cytomegalovirus (strain Merlin)
Query: 1 HTGQVYDDKD 10
H G+ YD+ D
Sbjct: 150 HYGKSYDNDD 159
>sp|SCAF_HHV7J|CAPSID scaffolding protein|Human herpesvirus 7 (strain JI)
Query: 5 VYDDKD 10
VYDD D
Sbjct: 12 VYDDND 17
>sp|PG049_VACCP|PROTEIN OPG049|Vaccinia virus (strain L-IVP) (VACV)
Query: 1 HTGQVYDDK 9
HT Y+DK
Sbjct: 42 HTSWYYNDK 50
>sp|ICP27_HCMVA|MRNA export factor ICP27 homolog|Human cytomegalovirus (strain AD169)
Query: 1 HTGQVYDDKD 10
H G+ YD+ D
Sbjct: 150 HYGKSYDNDD 159
>sp|PG049_VACCC|PROTEIN OPG049|Vaccinia virus (strain Copenhagen) (VACV)
Query: 1 HTGQVYDDK 9
HT Y+DK
Sbjct: 42 HTSWYYNDK 50
10|Sequence|46|55|YDDKDYRRIR
>sp|NCAP_LYCVW|NUCLEOPROTEIN choriomeningitis virus (strain WE)
Query: 2 DDKDYRRIR 10
DDKD +R+R
Sbjct: 60 DDKDLQRLR 68
>sp|NCAP_LYCVA|NUCLEOPROTEIN choriomeningitis virus (strain Armstrong)
Query: 2 DDKDYRRIR 10
DDKD +R+R
Sbjct: 60 DDKDLQRLR 68
>sp|POLG_TBEVW|GENOME polyprotein|Tick-borne encephalitis virus European subtype
Query: 3 DKDYRRIR 10
+KDY R+R
Sbjct: 1886 EKDYSRVR 1893
>sp|POLG_TBEVS|GENOME polyprotein|Tick-borne encephalitis virus Far Eastern
Query: 3 DKDYRRIR 10
+KDY R+R
Sbjct: 1886 EKDYSRVR 1893
>sp|POLG_TBEVH|GENOME polyprotein|Tick-borne encephalitis virus (strain Hypr)
Query: 3 DKDYRRIR 10
+KDY R+R
Sbjct: 1886 EKDYSRVR 1893
>sp|POLG_OHFV|GENOME polyprotein|Omsk hemorrhagic fever virus (OHFV)
Query: 3 DKDYRRIR 10
+KDY R+R
Sbjct: 1886 EKDYSRVR 1893
>sp|POLG_LIVK|GENOME polyprotein|Louping ill virus (isolate Grouses/Scotland/K/1980)
Query: 3 DKDYRRIR 10
+KDY R+R
Sbjct: 1886 EKDYSRVR 1893
>sp|POLG_LIV|GENOME polyprotein|Louping ill virus (LIV)
Query: 3 DKDYRRIR 10
+KDY R+R
Sbjct: 1886 EKDYSRVR 1893
>sp|POLG_KFDV|GENOME polyprotein|Kyasanur forest disease virus (KFDV)
Query: 3 DKDYRRIR 10
+KDY R+R
Sbjct: 1888 EKDYLRVR 1895
>sp|POLG_ALKV|GENOME polyprotein|Alkhumra hemorrhagic fever virus (ALKV)
Query: 3 DKDYRRIR 10
+KDY R+R
Sbjct: 1888 EKDYLRVR 1895
>sp|HEMA_I63A0|HEMAGGLUTININ A virus (strain A/Equine/Cambridge/1/1963
Query: 1 YDDKDYRR 8
YD K YR+
Sbjct: 506 YDHKKYRK 513
>sp|HEMA_I56A3|HEMAGGLUTININ A virus (strain A/Equine/Prague/1/1956
Query: 1 YDDKDYRR 8
YD K YR+
Sbjct: 506 YDHKKYRK 513
>sp|POLS_SFV|STRUCTURAL polyprotein|Semliki forest virus (SFV)
Query: 2 DDKDYRRIR 10
D+ DY +IR
Sbjct: 393 DNHDYTKIR 401
>sp|POLSF_SFV|FRAMESHIFTED structural polyprotein|Semliki forest virus (SFV)
Query: 2 DDKDYRRIR 10
D+ DY +IR
Sbjct: 393 DNHDYTKIR 401
>sp|HEMA_I77A9|HEMAGGLUTININ A virus (strain A/Equine/New
Query: 1 YDDKDYRR 8
YD K YR+
Sbjct: 506 YDHKKYRK 513
>sp|HEMA_I73A1|HEMAGGLUTININ A virus (strain A/Equine/Cambridge/1/1973
Query: 1 YDDKDYRR 8
YD K YR+
Sbjct: 506 YDHKKYRK 513
>sp|HEMA_I64A6|HEMAGGLUTININ A virus (strain A/Equine/Detroit/1/1964
Query: 1 YDDKDYRR 8
YD K YR+
Sbjct: 506 YDHKKYRK 513
>sp|HEMA_I73A4|HEMAGGLUTININ A virus (strain A/Equine/London/1416/1973
Query: 1 YDDKDYRR 8
YD K YR+
Sbjct: 506 YDHKKYRK 513
>sp|HEMA_I72A7|HEMAGGLUTININ A virus (strain A/Equine/Switzerland/137/1972
Query: 1 YDDKDYRR 8
YD K YR+
Sbjct: 506 YDHKKYRK 513
>sp|HEMA_I64A5|HEMAGGLUTININ A virus (strain A/Equine/C.Detroit/1/1964
Query: 1 YDDKDYRR 8
YD K YR+
Sbjct: 506 YDHKKYRK 513
>sp|HEMA_I76AL|HEMAGGLUTININ A virus (strain A/Equine/Sao
Query: 1 YDDKDYRR 8
YD K YR+
Sbjct: 506 YDHKKYRK 513
>sp|HEMA_I66A2|HEMAGGLUTININ A virus (strain A/Equine/Lexington/1/1966
Query: 1 YDDKDYRR 8
YD K YR+
Sbjct: 506 YDHKKYRK 513
>sp|NCAP_LASSJ|NUCLEOPROTEIN virus (strain Mouse/Sierra Leone/Josiah/1976)
Query: 2 DDKDYRRIR 10
DD D +R+R
Sbjct: 60 DDNDLKRLR 68
>sp|POLN_RUBVC|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRDII) (RUBV)
Query: 1 YDDKDYRRI 9
YDD + RR+
Sbjct: 1316 YDDLEVRRL 1324
>sp|POLN_RUBVV|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336) (RUBV)
Query: 1 YDDKDYRRI 9
YDD + RR+
Sbjct: 1316 YDDLEVRRL 1324
>sp|POLN_RUBVN|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RN-UK86) (RUBV)
Query: 1 YDDKDYRRI 9
YDD + RR+
Sbjct: 1316 YDDLEVRRL 1324
>sp|POLN_RUBVM|NON-STRUCTURAL polyprotein p200|Rubella virus (strain M33) (RUBV)
Query: 1 YDDKDYRRI 9
YDD + RR+
Sbjct: 1316 YDDLEVRRL 1324
>sp|POLN_RUBVD|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Cendehill) (RUBV)
Query: 1 YDDKDYRRI 9
YDD + RR+
Sbjct: 1316 YDDLEVRRL 1324
>sp|POLN_RUBVT|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Therien) (RUBV)
Query: 1 YDDKDYRRI 9
YDD + RR+
Sbjct: 1316 YDDLEVRRL 1324
>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)
Query: 1 YDDKDYRRI 9
YDD + RR+
Sbjct: 1316 YDDLEVRRL 1324
>sp|POLG_LANVT|GENOME polyprotein|Langat virus (strain TP21)
Query: 3 DKDYRRIR 10
DK+Y R++
Sbjct: 1886 DKEYSRVK 1893
>sp|POLN_RUBVO|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336 vaccine)
Query: 1 YDDKDYRRI 9
YDD + RR+
Sbjct: 1316 YDDLEVRRL 1324
>sp|POLN_RUBVB|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRD1) (RUBV)
Query: 1 YDDKDYRRI 9
YDD + RR+
Sbjct: 1316 YDDLEVRRL 1324
>sp|UL56_HHV1E|PROTEIN UL56|Human herpesvirus 1 (strain HFEM)
Query: 1 YDDKDYRR 8
YD YRR
Sbjct: 197 YDHAPYRR 204
>sp|L_GTOVV|RNA-DIRECTED RNA polymerase L|Guanarito mammarenavirus (isolate
Query: 2 DDKDYRR 8
++KDY+R
Sbjct: 511 NEKDYKR 517
>sp|NCAP_INBSI|NUCLEOPROTEIN B virus (strain B/Singapore/222/1979)
Query: 1 YDDKDY 6
YDD DY
Sbjct: 555 YDDLDY 560
>sp|NCAP_INBLE|NUCLEOPROTEIN B virus (strain B/Lee/1940)
Query: 1 YDDKDY 6
YDD DY
Sbjct: 555 YDDLDY 560
>sp|NCAP_INBAC|NUCLEOPROTEIN B virus (strain B/Ann
Query: 1 YDDKDY 6
YDD DY
Sbjct: 555 YDDLDY 560
>sp|VP3_CTFVL|UNCHARACTERIZED protein VP3|Colorado tick fever virus (strain
Query: 2 DDKDYR 7
DD DYR
Sbjct: 79 DDSDYR 84
>sp|NCAP_INBP9|NUCLEOPROTEIN B virus (strain B/Panama/45/1990)
Query: 1 YDDKDY 6
YDD DY
Sbjct: 555 YDDLDY 560
>sp|NCAP_INBAD|NUCLEOPROTEIN B virus (strain B/Ann
Query: 1 YDDKDY 6
YDD DY
Sbjct: 555 YDDLDY 560
>sp|NCAP_INBAA|NUCLEOPROTEIN B virus (strain B/Ann
Query: 1 YDDKDY 6
YDD DY
Sbjct: 555 YDDLDY 560
>sp|PG040_VACCA|SUPERINFECTION exclusion protein|Vaccinia virus (strain Ankara) (VACV)
Query: 2 DDKDYRRIR 10
DDK+Y +R
Sbjct: 213 DDKEYDMVR 221
>sp|NCAP_I76AA|NUCLEOPROTEIN A virus (strain A/Swine/Hong
Query: 1 YDDKDYRRI 9
YD ++ RRI
Sbjct: 111 YDKEEMRRI 119
>sp|NCAP_I56A3|NUCLEOPROTEIN A virus (strain A/Equine/Prague/1/1956
Query: 1 YDDKDYRRI 9
YD ++ RRI
Sbjct: 111 YDKEEIRRI 119
11|Sequence|51|60|YRRIRFVGRQ
>sp|NCAP_INBLE|NUCLEOPROTEIN B virus (strain B/Lee/1940)
Query: 4 IRFVGR 9
IRF+GR
Sbjct: 255 IRFIGR 260
>sp|NCAP_INBSI|NUCLEOPROTEIN B virus (strain B/Singapore/222/1979)
Query: 4 IRFVGR 9
IRF+GR
Sbjct: 255 IRFIGR 260
>sp|NCAP_INBAC|NUCLEOPROTEIN B virus (strain B/Ann
Query: 4 IRFVGR 9
IRF+GR
Sbjct: 255 IRFIGR 260
>sp|NCAP_INBP9|NUCLEOPROTEIN B virus (strain B/Panama/45/1990)
Query: 4 IRFVGR 9
IRF+GR
Sbjct: 255 IRFIGR 260
>sp|NCAP_INBAD|NUCLEOPROTEIN B virus (strain B/Ann
Query: 4 IRFVGR 9
IRF+GR
Sbjct: 255 IRFIGR 260
>sp|NCAP_INBAA|NUCLEOPROTEIN B virus (strain B/Ann
Query: 4 IRFVGR 9
IRF+GR
Sbjct: 255 IRFIGR 260
>sp|POLS_WEEV|STRUCTURAL polyprotein|Western equine encephalitis virus (WEEV)
Query: 3 RIRFVGRQ 10
R +FVGR+
Sbjct: 450 RRKFVGRE 457
>sp|DPOL_HHV6Z|DNA polymerase catalytic subunit|Human herpesvirus 6B (strain Z29)
Query: 5 RFVGRQ 10
R++GRQ
Sbjct: 794 RYIGRQ 799
>sp|DPOL_HHV6U|DNA polymerase catalytic subunit|Human herpesvirus 6A (strain
Query: 5 RFVGRQ 10
R++GRQ
Sbjct: 794 RYIGRQ 799
>sp|VP5_CTFVL|UNCHARACTERIZED protein VP5|Colorado tick fever virus (strain
Query: 4 IRFVGRQ 10
IR+VG Q
Sbjct: 77 IRYVGEQ 83
>sp|CAP8_ADE41|PRE-HEXON-LINKING protein VIII|Human adenovirus F serotype 41
Query: 2 RRIRFVGR 9
R +RF GR
Sbjct: 113 RHVRFRGR 120
>sp|CORE5_ADE12|CORE-CAPSID bridging protein|Human adenovirus A serotype 12
Query: 2 RRIRFVGRQ 10
RR+++ GRQ
Sbjct: 64 RRVQWKGRQ 72
>sp|VU3_HHV6U|PROTEIN U3|Human herpesvirus 6A (strain Uganda-1102)
Query: 2 RRIRFVG 8
RR+RF G
Sbjct: 7 RRVRFTG 13
12|Sequence|56|65|FVGRQKEVNE
>sp|NCAP_ANDV|NUCLEOPROTEIN orthohantavirus (ANDV) (Andes virus)
Query: 1 FVGRQKEVNE 10
F+ RQ++VNE
Sbjct: 265 FLNRQRQVNE 274
>sp|POLS_SINDV|STRUCTURAL polyprotein|Sindbis virus (SINV)
Query: 1 FVGRQK 6
FVGR+K
Sbjct: 462 FVGREK 467
>sp|POLS_SINDO|STRUCTURAL polyprotein|Sindbis virus subtype Ockelbo (strain
Query: 1 FVGRQK 6
FVGR+K
Sbjct: 462 FVGREK 467
>sp|POLSF_SINDV|FRAMESHIFTED structural polyprotein|Sindbis virus (SINV)
Query: 1 FVGRQK 6
FVGR+K
Sbjct: 462 FVGREK 467
>sp|PAP1_YMTV5|POLY(A) polymerase catalytic subunit|Yaba monkey tumor virus (strain
Query: 1 FVGRQKEVNE 10
++GR VNE
Sbjct: 12 YLGRMPTVNE 21
>sp|PAP1_YLDV|POLY(A) polymerase catalytic subunit|Yaba-like disease virus (YLDV)
Query: 1 FVGRQKEVNE 10
++GR +NE
Sbjct: 12 YLGRMPTINE 21
>sp|PAP1_VARV|POLY(A) polymerase catalytic subunit|Variola virus
Query: 1 FVGRQKEVNE 10
++GR VNE
Sbjct: 21 YLGRLPSVNE 30
>sp|PAP1_VAR67|POLY(A) polymerase catalytic subunit|Variola virus (isolate
Query: 1 FVGRQKEVNE 10
++GR VNE
Sbjct: 21 YLGRLPSVNE 30
>sp|PAP1_MONPV|POLY(A) polymerase catalytic subunit|Monkeypox virus (MPXV)
Query: 1 FVGRQKEVNE 10
++GR VNE
Sbjct: 21 YLGRVPSVNE 30
>sp|PAP1_CWPXG|POLY(A) polymerase catalytic subunit|Cowpox virus (strain GRI-90 /
Query: 1 FVGRQKEVNE 10
++GR VNE
Sbjct: 21 YLGRVPSVNE 30
>sp|PAP1_VACCT|POLY(A) polymerase catalytic subunit|Vaccinia virus (strain Tian Tan)
Query: 1 FVGRQKEVNE 10
++GR VNE
Sbjct: 21 YLGRVPSVNE 30
>sp|PAP1_VACCC|POLY(A) polymerase catalytic subunit|Vaccinia virus (strain Copenhagen)
Query: 1 FVGRQKEVNE 10
++GR VNE
Sbjct: 21 YLGRVPSVNE 30
>sp|PAP1_VACCA|POLY(A) polymerase catalytic subunit|Vaccinia virus (strain Ankara)
Query: 1 FVGRQKEVNE 10
++GR VNE
Sbjct: 21 YLGRVPSVNE 30
13|Sequence|61|70|KEVNENFAID
>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)
Query: 2 EVNENFAID 10
+VNEN A++
Sbjct: 5970 KVNENLAVN 5978
>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)
Query: 2 EVNENFAID 10
+VNEN A++
Sbjct: 6020 KVNENLAVN 6028
>sp|GAG_HV1MP|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 KEVNENFAI 9
KEV++N+ I
Sbjct: 122 KEVSQNYPI 130
>sp|POL_HV1MP|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 KEVNENFAI 9
KEV++N+ I
Sbjct: 122 KEVSQNYPI 130
>sp|NP03_VZVO|NUCLEAR phosphoprotein UL3 homolog|Varicella-zoster virus (strain Oka
Query: 2 EVNENFAI 9
+ NENF I
Sbjct: 49 DANENFPI 56
>sp|E1A_ADE04|EARLY E1A protein|Human adenovirus E serotype 4
Query: 1 KEVNENFAID 10
+ V+E+FA+D
Sbjct: 140 QAVSESFALD 149
>sp|POLG_KUNJM|GENOME polyprotein|Kunjin virus (strain MRM61C)
Query: 2 EVNENFAI 9
E ENF+I
Sbjct: 2295 ETKENFSI 2302
>sp|GLYC_JUNIN|PRE-GLYCOPROTEIN polyprotein GP complex|Junin mammarenavirus (JUNV) (Junn
Query: 3 VNENFA 8
+NEN+A
Sbjct: 184 INENYA 189
14|Sequence|66|75|NFAIDLIAEQ
>sp|TRM3_VZVD|TRIPARTITE terminase subunit 3|Varicella-zoster virus (strain Dumas) (HHV-3)
Query: 1 NFAIDL 6
NFAID+
Sbjct: 55 NFAIDV 60
>sp|UL35_HCMVM|TEGUMENT protein UL35|Human cytomegalovirus (strain Merlin) (HHV-5)
Query: 1 NFAIDLIAEQ 10
NF +DL ++
Sbjct: 23 NFRVDLFGDE 32
>sp|UL35_HCMVA|PROTEIN UL35|Human cytomegalovirus (strain AD169) (HHV-5)
Query: 1 NFAIDLIAEQ 10
NF +DL ++
Sbjct: 23 NFRVDLFGDE 32
>sp|UL13_HHV11|SERINE/THREONINE-PROTEIN kinase UL13|Human herpesvirus 1 (strain 17)
Query: 2 FAIDLIA 8
FA++LIA
Sbjct: 184 FAVELIA 190
>sp|PG074_VACCC|PROTEIN OPG074|Vaccinia virus (strain Copenhagen) (VACV)
Query: 1 NFAIDLIAEQ 10
NF IDL ++
Sbjct: 141 NFKIDLTVDE 150
>sp|PG074_MONPV|PROTEIN OPG074|Monkeypox virus (MPXV)
Query: 1 NFAIDLIAEQ 10
NF IDL ++
Sbjct: 141 NFKIDLTVDE 150
>sp|PG074_VAR67|PROTEIN OPG074|Variola virus (isolate Human/India/Ind3/1967) (VARV)
Query: 1 NFAIDLIAEQ 10
NF IDL ++
Sbjct: 141 NFKIDLTVDE 150
15|Sequence|71|80|LIAEQPVSEV
>sp|POLG_EMCVB|GENOME polyprotein|Encephalomyocarditis virus (strain emc-b nondiabetogenic)
Query: 1 LIAEQPVSEV 10
L+A+ PV EV
Sbjct: 1516 LVAQAPVDEV 1525
>sp|POLG_EMCVD|GENOME polyprotein|Encephalomyocarditis virus (strain emc-d diabetogenic)
Query: 1 LIAEQPVSEV 10
L+A+ PV EV
Sbjct: 1516 LVAQAPVDEV 1525
>sp|VL2_HPV50|MINOR capsid protein L2|Human papillomavirus type 50
Query: 1 LIAEQPVSE 9
+A+QP+SE
Sbjct: 264 FVAQQPISE 272
>sp|POLG_EMCVR|GENOME polyprotein|Encephalomyocarditis virus (strain Rueckert) (EMCV)
Query: 1 LIAEQPVSEV 10
L+A+ PV EV
Sbjct: 1516 LVAQGPVDEV 1525
>sp|POLG_ENMGO|GENOME polyprotein|Mengo encephalomyocarditis virus
Query: 1 LIAEQPVSEV 10
L+A+ PV EV
Sbjct: 1517 LVAQGPVDEV 1526
>sp|POLG_EMCV|GENOME polyprotein|Encephalomyocarditis virus
Query: 1 LIAEQPVSEV 10
L+A+ PV EV
Sbjct: 1514 LVAQGPVDEV 1523
>sp|VL2_HPV47|MINOR capsid protein L2|Human papillomavirus 47
Query: 2 IAEQPVSEV 10
IAE P+SE
Sbjct: 406 IAENPLSET 414
>sp|VL2_HPV12|MINOR capsid protein L2|Human papillomavirus 12
Query: 2 IAEQPVSE 9
IAE P+SE
Sbjct: 406 IAEDPLSE 413
>sp|LTP_HHV2H|LARGE tegument protein deneddylase|Human herpesvirus 2 (strain HG52)
Query: 1 LIAEQPVSE 9
LIAE+P+++
Sbjct: 2399 LIAERPLAD 2407
>sp|LTP_HHV11|LARGE tegument protein deneddylase|Human herpesvirus 1 (strain 17)
Query: 1 LIAEQPVSE 9
LIAE+P++
Sbjct: 2426 LIAERPLAR 2434
16|Sequence|76|85|PVSEVETRVI
>sp|GAG_SFV1|GAG polyprotein|Simian foamy virus type 1
Query: 1 PVSEVETRVI 10
P S++ +RVI
Sbjct: 332 PTSDIRSRVI 341
>sp|GAG_HTL1C|GAG polyprotein|Human T-cell leukemia virus 1
Query: 2 VSEVETRVI 10
+SE ETR I
Sbjct: 209 ISEAETRGI 217
>sp|POL_HTL1C|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 1
Query: 2 VSEVETRVI 10
+SE ETR I
Sbjct: 209 ISEAETRGI 217
>sp|GAG_HTL1M|GAG polyprotein|Human T-cell leukemia virus 1
Query: 2 VSEVETRVI 10
+SE ETR I
Sbjct: 209 ISEAETRGI 217
>sp|GAG_HTL1A|GAG polyprotein|Human T-cell leukemia virus 1
Query: 2 VSEVETRVI 10
+SE ETR I
Sbjct: 209 ISEAETRGI 217
>sp|POL_HTL1A|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 1
Query: 2 VSEVETRVI 10
+SE ETR I
Sbjct: 209 ISEAETRGI 217
>sp|POL_HTL1L|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 1
Query: 2 VSEVETRVI 10
+SE ETR I
Sbjct: 209 ISEAETRGI 217
>sp|GAG_HTL1L|GAG polyprotein|Human T-cell leukemia virus 1
Query: 2 VSEVETRVI 10
+SE ETR I
Sbjct: 209 ISEAETRGI 217
17|Sequence|81|90|ETRVIACDGG
>sp|POLG_STEVM|GENOME polyprotein|St. louis encephalitis virus (strain
Query: 2 TRVIACD 8
TRV+AC+
Sbjct: 1724 TRVVACE 1730
>sp|TRX2_HHV2H|TRIPLEX capsid protein 2|Human herpesvirus 2 (strain HG52)
Query: 2 TRVIAC 7
TR++AC
Sbjct: 81 TRIVAC 86
>sp|TRX2_HHV11|TRIPLEX capsid protein 2|Human herpesvirus 1 (strain 17)
Query: 2 TRVIAC 7
TR++AC
Sbjct: 81 TRIVAC 86
>sp|PG163_VACCC|PROTEIN OPG163|Vaccinia virus (strain Copenhagen) (VACV)
Query: 2 TRVIACD 8
T +IACD
Sbjct: 90 TIIIACD 96
>sp|PG163_MONPV|PROTEIN OPG163|Monkeypox virus (MPXV)
Query: 2 TRVIACD 8
T +IACD
Sbjct: 90 TIIIACD 96
>sp|POLG_HCVTR|GENOME polyprotein|Hepatitis C virus genotype 3b
Query: 5 IACDGG 10
+ACDG
Sbjct: 2804 VACDGA 2809
>sp|POLG_KOKV|GENOME polyprotein|Kokobera virus (KOKV)
Query: 1 ETRVIACD 8
+TR+ CD
Sbjct: 3047 DTRITECD 3054
>sp|VE2_HPV12|REGULATORY protein E2|Human papillomavirus 12
Query: 4 VIACDGG 10
VI C GG
Sbjct: 413 VIICKGG 419
18|Sequence|86|95|ACDGGGGALG
>sp|UL87_HCMVM|UNCHARACTERIZED protein UL87|Human cytomegalovirus (strain Merlin) (HHV-5)
Query: 2 CDGGGGALG 10
C GGGGA G
Sbjct: 175 CPGGGGASG 183
>sp|UL87_HCMVA|PROTEIN UL87|Human cytomegalovirus (strain AD169) (HHV-5)
Query: 2 CDGGGGALG 10
C GGGGA G
Sbjct: 175 CPGGGGASG 183
>sp|US13_HCMVM|MEMBRANE protein US13|Human cytomegalovirus (strain Merlin) (HHV-5)
Query: 2 CDGGGGA 8
C+GGGG+
Sbjct: 255 CEGGGGS 261
>sp|US13_HCMVA|UNCHARACTERIZED protein HVLF5|Human cytomegalovirus (strain AD169) (HHV-5)
Query: 2 CDGGGGA 8
C+GGGG+
Sbjct: 255 CEGGGGS 261
>sp|POLG_COSAA|GENOME polyprotein|Cosavirus A (isolate Human/Pakistan/0553/-) (HCoSV-A)
Query: 2 CDGGGG 7
C GGGG
Sbjct: 1631 CAGGGG 1636
>sp|POLG_HCVTR|GENOME polyprotein|Hepatitis C virus genotype 3b
Query: 1 ACDGGG 6
ACDG G
Sbjct: 2805 ACDGAG 2810
>sp|VE1_HPV42|REPLICATION protein E1|Human papillomavirus 42
Query: 4 GGGGALG 10
G GGA+G
Sbjct: 161 GNGGAVG 167
>sp|VE1_HPV72|REPLICATION protein E1|Human papillomavirus 72
Query: 4 GGGGAL 9
GGGGA+
Sbjct: 158 GGGGAV 163
>sp|POL_HV2ST|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|POL_HV2RO|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|POL_HV2G1|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 352 ACQGVGG 358
>sp|POL_HV2D1|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|POL_HV2CA|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|POL_HV2BE|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|POL_HV1Z2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 350 ACQGVGG 356
>sp|POL_HV1YF|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|POL_HV1YB|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|POL_HV1Y2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1VI|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|POL_HV1V9|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|POL_HV1U4|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|POL_HV1SE|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1S9|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1S2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1RH|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1OY|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1ND|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 346 ACQGVGG 352
>sp|POL_HV1N5|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1MV|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 348 ACQGVGG 354
>sp|POL_HV1MP|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|POL_HV1MN|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 352 ACQGVGG 358
>sp|POL_HV1MA|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 355 ACQGVGG 361
>sp|POL_HV1M2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1LW|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1JR|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1J3|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1H2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1ET|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 347 ACQGVGG 353
>sp|POL_HV1EL|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1BR|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1B9|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1B5|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1B1|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|POL_HV1AN|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 348 ACQGVGG 354
>sp|POL_HV1A2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|POL_HV19N|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 348 ACQGVGG 354
>sp|POL_HV197|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|POL_HV196|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|POL_HV193|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|POL_HV192|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 347 ACQGVGG 353
>sp|POL_HV190|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV2ST|GAG polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|GAG_HV1Z2|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 350 ACQGVGG 356
>sp|GAG_HV1YF|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|GAG_HV1Y2|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1W2|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1S9|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1S2|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1RH|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1OY|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1ND|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 346 ACQGVGG 352
>sp|GAG_HV1N5|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1MP|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|GAG_HV1MN|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 352 ACQGVGG 358
>sp|GAG_HV1MA|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 355 ACQGVGG 361
>sp|GAG_HV1LW|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1JR|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1J3|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1H2|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1ET|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 347 ACQGVGG 353
>sp|GAG_HV1EL|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1C4|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1BR|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1B9|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1B5|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1B1|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1A2|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|GAG_HV19N|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 348 ACQGVGG 354
>sp|GAG_HV197|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|GAG_HV196|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|GAG_HV192|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 347 ACQGVGG 353
>sp|GAG_HV190|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|VE1_HPV08|REPLICATION protein E1|Human papillomavirus type 8
Query: 3 DGGGGAL 9
+GG GAL
Sbjct: 142 EGGSGAL 148
>sp|R1AB_SARS2|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus
Query: 1 ACDGG 5
CDGG
Sbjct: 6338 GCDGG 6342
>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus
Query: 1 ACDGG 5
CDGG
Sbjct: 6315 GCDGG 6319
>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related coronavirus
Query: 1 ACDGG 5
CDGG
Sbjct: 6317 GCDGG 6321
>sp|GAG_HV1M2|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1MV|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 348 ACQGVGG 354
>sp|ATI_COWPX|A-TYPE inclusion protein A25 homolog|Cowpox virus (CPV)
Query: 1 ACDGGGGALG 10
AC GG+ G
Sbjct: 893 ACKSNGGSNG 902
>sp|GAG_HV2BE|GAG polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|GAG_HV1VI|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|GAG_HV1U4|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|GAG_HV1SE|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV2RO|GAG polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|GAG_HV193|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 345 ACQGVGG 351
>sp|POL_HV2UC|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 346 ACQGIGG 352
>sp|POL_HV2SB|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 350 ACQGIGG 356
>sp|POL_HV2KR|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGIGG 357
>sp|POL_HV2EH|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 346 ACQGIGG 352
>sp|POL_HV2D2|GAG-POL polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 346 ACQGIGG 352
>sp|POL_HV1C4|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 349 ACQGVGG 355
>sp|GAG_HV1YB|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|GAG_HV1V9|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|GAG_HV2G1|GAG polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 352 ACQGVGG 358
>sp|GAG_HV2D1|GAG polyprotein|Human immunodeficiency virus type 2
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 351 ACQGVGG 357
>sp|GAG_HV1AN|GAG polyprotein|Human immunodeficiency virus type 1
Query: 1 ACDGGGG 7
AC G GG
Sbjct: 348 ACQGVGG 354
19|Sequence|91|100|GGALGHPKVY
>sp|L_MEASE|RNA-DIRECTED RNA polymerase L|Measles virus (strain Edmonston) (MeV)
Query: 3 ALGHPKVY 10
AL HPK+Y
Sbjct: 1532 ALSHPKIY 1539
>sp|L_MEASC|RNA-DIRECTED RNA polymerase L|Measles virus (strain Ichinose-B95a) (MeV)
Query: 3 ALGHPKVY 10
AL HPK+Y
Sbjct: 1532 ALSHPKIY 1539
>sp|L_MEASA|RNA-DIRECTED RNA polymerase L|Measles virus (strain Edmonston-AIK-C vaccine)
Query: 3 ALGHPKVY 10
AL HPK+Y
Sbjct: 1532 ALSHPKIY 1539
>sp|L_PI3H4|RNA-DIRECTED RNA polymerase L|Human parainfluenza 3 virus (strain
Query: 3 ALGHPKVY 10
AL HPKV+
Sbjct: 1534 ALSHPKVF 1541
>sp|L_NIPAV|RNA-DIRECTED RNA polymerase L|Nipah virus
Query: 3 ALGHPKVY 10
AL HP+V+
Sbjct: 1591 ALSHPRVF 1598
>sp|L_HENDH|RNA-DIRECTED RNA polymerase L|Hendra virus (isolate Horse/Autralia/Hendra/1994)
Query: 3 ALGHPKVY 10
AL HP+V+
Sbjct: 1591 ALSHPRVF 1598
>sp|GP_BUNYW|ENVELOPMENT polyprotein|Bunyamwera virus (BUNV)
Query: 2 GALGHPKVY 10
G GH KV+
Sbjct: 63 GIFGHSKVF 71
>sp|L_PIV5W|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain 21004-WR)
Query: 4 LGHPKVY 10
L HPK++
Sbjct: 1537 LSHPKLF 1543
>sp|L_PIV5|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain W3)
Query: 4 LGHPKVY 10
L HPK++
Sbjct: 1537 LSHPKLF 1543
>sp|SCAF_HHV8P|CAPSID scaffolding protein|Human herpesvirus 8 type P
Query: 1 GGALGHPKVY 10
GG HP +Y
Sbjct: 423 GGTYVHPPIY 432
>sp|UL36_HCMVA|UNCHARACTERIZED protein UL36|Human cytomegalovirus (strain AD169) (HHV-5)
Query: 2 GALGH 6
GALGH
Sbjct: 237 GALGH 241
>sp|VICA_HCMVM|VIRAL inhibitor of caspase-8-induced apoptosis|Human cytomegalovirus
Query: 2 GALGH 6
GALGH
Sbjct: 237 GALGH 241
>sp|LTP_HCMVT|LARGE tegument protein deneddylase|Human cytomegalovirus (strain Towne)
Query: 1 GGALGHPKV 9
GGA H KV
Sbjct: 1425 GGAARHQKV 1433
>sp|LTP_HCMVM|LARGE tegument protein deneddylase|Human cytomegalovirus (strain Merlin)
Query: 1 GGALGHPKV 9
GGA H KV
Sbjct: 1424 GGAARHQKV 1432
>sp|LTP_HCMVA|LARGE tegument protein deneddylase|Human cytomegalovirus (strain AD169)
Query: 1 GGALGHPKV 9
GGA H KV
Sbjct: 1424 GGAARHQKV 1432
>sp|AN_HHV8P|SHUTOFF alkaline exonuclease|Human herpesvirus 8 type P
Query: 4 LGHPKVY 10
LG PK Y
Sbjct: 397 LGSPKYY 403
>sp|POLG_KOKV|GENOME polyprotein|Kokobera virus (KOKV)
Query: 1 GGALGHPK 8
GGA GH K
Sbjct: 513 GGAEGHWK 520
>sp|POLG_HCVH9|GENOME polyprotein|Hepatitis C virus genotype 1c
Query: 1 GGALGH 6
GGA GH
Sbjct: 389 GGAAGH 394
>sp|DUT_HHV11|DEOXYURIDINE 5'-triphosphate nucleotidohydrolase|Human herpesvirus 1 (strain 17)
Query: 2 GALGHPKV 9
GALG P V
Sbjct: 168 GALGAPSV 175
20|Sequence|96|105|HPKVYINLDK
>sp|DPOL_HHV2H|DNA polymerase catalytic subunit|Human herpesvirus 2 (strain HG52)
Query: 1 HPKVYIN 7
HP+ Y N
Sbjct: 1045 HPRAYTN 1051
>sp|DPOL_HHV21|DNA polymerase catalytic subunit|Human herpesvirus 2 (strain 186)
Query: 1 HPKVYIN 7
HP+ Y N
Sbjct: 1045 HPRAYTN 1051
>sp|DPOL_HHV1S|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain SC16)
Query: 1 HPKVYIN 7
HP+ Y N
Sbjct: 1040 HPRAYTN 1046
>sp|DPOL_HHV11|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain 17)
Query: 1 HPKVYIN 7
HP+ Y N
Sbjct: 1040 HPRAYTN 1046
>sp|DPOL_HHV1K|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain KOS)
Query: 1 HPKVYIN 7
HP+ Y N
Sbjct: 1040 HPRAYTN 1046
>sp|DPOL_HHV1A|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain Angelotti)
Query: 1 HPKVYIN 7
HP+ Y N
Sbjct: 1040 HPRAYTN 1046
>sp|L_RABVB|LARGE structural protein|Rabies virus (strain silver-haired bat-associated)
Query: 1 HPKVYINL 8
HP +YI L
Sbjct: 1465 HPSLYIML 1472
>sp|RIR1_HCMVM|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit-like protein|Human cytomegalovirus (strain
Query: 2 PKVYINLD 9
PKV +N D
Sbjct: 533 PKVVVNTD 540
>sp|RIR1_HCMVA|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit-like protein|Human cytomegalovirus (strain
Query: 2 PKVYINLD 9
PKV +N D
Sbjct: 533 PKVVVNTD 540
>sp|L_RABVR|LARGE structural protein|Rabies virus (strain China/MRV) (RABV)
Query: 1 HPKVYINL 8
HP +YI L
Sbjct: 1464 HPSLYIML 1471
>sp|L_RABVH|LARGE structural protein|Rabies virus (strain HEP-Flury) (RABV)
Query: 1 HPKVYINL 8
HP +YI L
Sbjct: 1464 HPSLYIML 1471
>sp|L_RABVS|LARGE structural protein|Rabies virus (strain SAD B19)
Query: 1 HPKVYINL 8
HP +YI L
Sbjct: 1464 HPSLYIML 1471
>sp|L_RABVP|LARGE structural protein|Rabies virus (strain Pasteur vaccins
Query: 1 HPKVYINL 8
HP +YI L
Sbjct: 1464 HPSLYIML 1471
>sp|L_RABVI|LARGE structural protein|Rabies virus (strain India) (RABV)
Query: 1 HPKVYINL 8
HP +YI L
Sbjct: 1464 HPSLYIML 1471
>sp|L_RABVE|LARGE structural protein|Rabies virus (strain ERA) (RABV)
Query: 1 HPKVYINL 8
HP +YI L
Sbjct: 1464 HPSLYIML 1471
>sp|L_RABVA|LARGE structural protein|Rabies virus (strain PM1503/AVO1) (RABV)
Query: 1 HPKVYINL 8
HP +YI L
Sbjct: 1464 HPSLYIML 1471
>sp|VE2_HPV09|REGULATORY protein E2|Human papillomavirus 9
Query: 5 YINLDK 10
YIN DK
Sbjct: 169 YINFDK 174
>sp|DPOL_VZVO|DNA polymerase catalytic subunit|Varicella-zoster virus (strain Oka
Query: 2 PKVYIN 7
PKVY N
Sbjct: 72 PKVYCN 77
>sp|DPOL_VZVD|DNA polymerase catalytic subunit|Varicella-zoster virus (strain
Query: 2 PKVYIN 7
PKVY N
Sbjct: 72 PKVYCN 77
>sp|L_RABVN|LARGE structural protein|Rabies virus (strain Nishigahara RCEH)
Query: 1 HPKVYINL 8
HP +Y+ L
Sbjct: 1464 HPSLYVML 1471
>sp|CEP2_EBVG|CYTOPLASMIC envelopment protein 2|Epstein-Barr virus (strain GD1) (HHV-4)
Query: 2 PKVYINL 8
PK Y+N+
Sbjct: 53 PKTYMNV 59
>sp|CEP2_EBVB9|CYTOPLASMIC envelopment protein 2|Epstein-Barr virus (strain B95-8) (HHV-4)
Query: 2 PKVYINL 8
PK Y+N+
Sbjct: 53 PKTYMNV 59
>sp|CEP2_EBVA8|CYTOPLASMIC envelopment protein 2|Epstein-Barr virus (strain AG876) (HHV-4)
Query: 2 PKVYINL 8
PK Y+N+
Sbjct: 53 PKTYMNV 59
>sp|UL13_HHV2H|SERINE/THREONINE-PROTEIN kinase UL13|Human herpesvirus 2 (strain HG52)
Query: 1 HPKVYIN 7
HP +++N
Sbjct: 436 HPALFVN 442
>sp|UL13_HHV11|SERINE/THREONINE-PROTEIN kinase UL13|Human herpesvirus 1 (strain 17)
Query: 1 HPKVYIN 7
HP +++N
Sbjct: 436 HPALFVN 442
>sp|L_RABVD|LARGE structural protein|Rabies virus (strain China/DRV) (RABV)
Query: 1 HPKVYINL 8
HP +Y+ L
Sbjct: 1464 HPSLYVML 1471
>sp|L_MABVP|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Popp-67)
Query: 1 HPKVYIN--LDK 10
HP +YI+ LDK
Sbjct: 380 HPVLYIDVALDK 391
>sp|L_ABLVH|LARGE structural protein|Australian bat lyssavirus (isolate Human/AUS/1998)
Query: 1 HPKVYINL 8
HP +Y+ L
Sbjct: 1464 HPSLYVML 1471
>sp|CEP3_HHV7J|CYTOPLASMIC envelopment protein 3|Human herpesvirus 7 (strain JI)
Query: 5 YINLDK 10
YINL+K
Sbjct: 28 YINLEK 33
>sp|L_ABLVB|LARGE structural protein|Australian bat lyssavirus (isolate Bat/AUS/1996)
Query: 1 HPKVYINL 8
HP +Y+ L
Sbjct: 1465 HPSLYVML 1472
>sp|L_PI3H4|RNA-DIRECTED RNA polymerase L|Human parainfluenza 3 virus (strain
Query: 1 HPKVYINLDK 10
HP++ + LDK
Sbjct: 214 HPELVLILDK 223
>sp|VP35_EBOSU|POLYMERASE cofactor VP35|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)
Query: 3 KVYINLD 9
+ YINLD
Sbjct: 187 QAYINLD 193
21|Sequence|101|110|INLDKETKTG
>sp|SPIKE_MERS1|SPIKE glycoprotein|Middle East respiratory syndrome-related coronavirus
Query: 4 DKETKT 9
DKETKT
Sbjct: 664 DKETKT 669
>sp|VP4_CTFVL|UNCHARACTERIZED protein VP4|Colorado tick fever virus (strain
Query: 3 LDKETKT 9
LD+ETK+
Sbjct: 362 LDEETKS 368
>sp|POL_HV1S2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 4 DKETKTG 10
++ETKTG
Sbjct: 1031 NRETKTG 1037
22|Sequence|106|115|ETKTGTCGYC
>sp|POL_HV1S2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETKTG GY
Sbjct: 1033 ETKTGKAGY 1041
>sp|POLG_HRV3|GENOME polyprotein|Human rhinovirus 3 (HRV-3)
Query: 2 TKTGTCG 8
TKTG CG
Sbjct: 1677 TKTGQCG 1683
>sp|POLG_HRV14|GENOME polyprotein|Human rhinovirus 14 (HRV-14)
Query: 2 TKTGTCG 8
TKTG CG
Sbjct: 1678 TKTGQCG 1684
>sp|NEF_HV2CA|PROTEIN Nef|Human immunodeficiency virus type 2
Query: 3 KTGTCGYC 10
+ GTCG C
Sbjct: 24 RAGTCGEC 31
>sp|POL_HV1S9|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1033 ETKVGKAGY 1041
>sp|POL_HV1VI|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1031 ETKKGKAGY 1039
>sp|POL_HV1V9|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1037 ETKMGKAGY 1045
>sp|POL_HV1MN|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1042 ETKKGKAGY 1050
>sp|POL_HV1MA|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1041 ETKKGKAGY 1049
>sp|POL_HV193|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1031 ETKKGKAGY 1039
>sp|POL_HV197|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1031 ETKQGKAGY 1039
>sp|POL_HV1ET|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1040 ETKIGKAGY 1048
>sp|POL_HV196|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1031 ETKKGRAGY 1039
>sp|POL_HV1Z2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1037 ETKLGKAGY 1045
>sp|POL_HV1Y2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1036 ETKLGKAGY 1044
>sp|POL_HV1U4|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1029 ETKLGKAGY 1037
>sp|POL_HV1SE|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1034 ETKLGKAGY 1042
>sp|POL_HV1RH|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1037 ETKLGKAGY 1045
>sp|POL_HV1OY|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1035 ETKLGKAGY 1043
>sp|POL_HV1ND|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1033 ETKLGKAGY 1041
>sp|POL_HV1N5|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1036 ETKLGKAGY 1044
>sp|POL_HV1MP|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1031 ETKLGKAGY 1039
>sp|POL_HV1M2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1035 ETKLGKAGY 1043
>sp|POL_HV1LW|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1036 ETKLGKAGY 1044
>sp|POL_HV1JR|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1040 ETKLGKAGY 1048
>sp|POL_HV1H2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1036 ETKLGKAGY 1044
>sp|POL_HV1EL|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1036 ETKLGKAGY 1044
>sp|POL_HV1BR|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1048 ETKLGKAGY 1056
>sp|POL_HV1B5|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1048 ETKLGKAGY 1056
>sp|POL_HV1B1|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1048 ETKLGKAGY 1056
>sp|POL_HV1AN|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1035 ETKLGKAGY 1043
>sp|POL_HV1A2|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1038 ETKLGKAGY 1046
>sp|POL_HV190|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
ETK G GY
Sbjct: 1036 ETKLGKAGY 1044
>sp|POLS_SINDV|STRUCTURAL polyprotein|Sindbis virus (SINV)
Query: 5 GTCGYC 10
GTC YC
Sbjct: 342 GTCSYC 347
>sp|DNBI_HHV8P|MAJOR DNA-binding protein|Human herpesvirus 8 type P
Query: 4 TGTCGY 9
TG CGY
Sbjct: 19 TGPCGY 24
>sp|POL_HV1B9|GAG-POL polyprotein|Human immunodeficiency virus type 1
Query: 1 ETKTGTCGY 9
+TK+G GY
Sbjct: 1036 DTKSGKAGY 1044
>sp|POLG_DEN3P|GENOME polyprotein|Dengue virus type 3 (strain
Query: 3 KTGTCGYC 10
K G CG C
Sbjct: 2932 KLGKCGSC 2939
>sp|POLG_DEN3I|GENOME polyprotein|Dengue virus type 3 (strain
Query: 3 KTGTCGYC 10
K G CG C
Sbjct: 2932 KLGKCGSC 2939
>sp|POLG_DEN3C|GENOME polyprotein|Dengue virus type 3 (strain
Query: 3 KTGTCGYC 10
K G CG C
Sbjct: 2932 KLGKCGSC 2939
>sp|POLG_DEN3S|GENOME polyprotein|Dengue virus type 3 (strain
Query: 3 KTGTCGYC 10
K G CG C
Sbjct: 2932 KLGKCGSC 2939
>sp|POLG_HRV2|GENOME polyprotein|Human rhinovirus 2 (HRV-2)
Query: 2 TKTGTCG 8
TK+G CG
Sbjct: 1649 TKSGYCG 1655
>sp|POLG_DEN3M|GENOME polyprotein|Dengue virus type 3 (strain
Query: 3 KTGTCGYC 10
K G CG C
Sbjct: 2932 KLGKCGSC 2939
>sp|POLG_HRV1B|GENOME polyprotein|Human rhinovirus 1B (HRV-1B)
Query: 2 TKTGTCG 8
TK+G CG
Sbjct: 1656 TKSGYCG 1662
>sp|POLG_HRV1A|GENOME polyprotein|Human rhinovirus 1A (HRV-1A)
Query: 2 TKTGTCG 8
TK+G CG
Sbjct: 1656 TKSGYCG 1662
>sp|POLG_HRV16|GENOME polyprotein|Human rhinovirus 16 (HRV-16)
Query: 2 TKTGTCG 8
TK+G CG
Sbjct: 1652 TKSGYCG 1658
>sp|L_PI2HT|RNA-DIRECTED RNA polymerase L|Human parainfluenza 2 virus (strain
Query: 4 TGTCGYC 10
TG C +C
Sbjct: 1182 TGDCDFC 1188
>sp|POLS_SINDO|STRUCTURAL polyprotein|Sindbis virus subtype Ockelbo (strain
Query: 5 GTCGYC 10
GTC YC
Sbjct: 342 GTCSYC 347
>sp|POLG_HE71M|GENOME polyprotein|Human enterovirus 71 (strain 7423/MS/87)
Query: 2 TKTGTCG 8
TK G CG
Sbjct: 1690 TKAGQCG 1696
>sp|POLG_HE71|GENOME polyprotein|Human enterovirus 71 (EV71) (EV-71)
Query: 2 TKTGTCG 8
TK G CG
Sbjct: 1690 TKAGQCG 1696
>sp|POLG_CX16G|GENOME polyprotein|Coxsackievirus A16 (strain G-10)
Query: 2 TKTGTCG 8
TK G CG
Sbjct: 1690 TKAGQCG 1696
>sp|POLSF_SINDV|FRAMESHIFTED structural polyprotein|Sindbis virus (SINV)
Query: 5 GTCGYC 10
GTC YC
Sbjct: 342 GTCSYC 347
>sp|POLG_CX16T|GENOME polyprotein|Coxsackievirus A16 (strain Tainan/5079/98)
Query: 2 TKTGTCG 8
TK G CG
Sbjct: 1690 TKAGQCG 1696
>sp|HELI_EBVB9|DNA replication helicase|Epstein-Barr virus (strain B95-8) (HHV-4)
Query: 1 ETKTGTCGY 9
+TK CGY
Sbjct: 467 KTKKSICGY 475
>sp|DNBI_EBVB9|MAJOR DNA-binding protein|Epstein-Barr virus (strain B95-8) (HHV-4)
Query: 1 ETKTGTCGY 9
+++ G CGY
Sbjct: 14 QSQPGPCGY 22
>sp|DNBI_EBVA8|MAJOR DNA-binding protein|Epstein-Barr virus (strain AG876) (HHV-4)
Query: 1 ETKTGTCGY 9
+++ G CGY
Sbjct: 14 QSQPGPCGY 22
>sp|VE1_HPV29|REPLICATION protein E1|Human papillomavirus 29
Query: 1 ETKTGTCG 8
ET+ G CG
Sbjct: 197 ETEKGACG 204
>sp|GK_HHV2H|ENVELOPE glycoprotein K|Human herpesvirus 2 (strain HG52)
Query: 4 TGTCGYC 10
+G CG C
Sbjct: 293 SGVCGRC 299
>sp|DNBI_EBVG|MAJOR DNA-binding protein|Epstein-Barr virus (strain GD1) (HHV-4)
Query: 1 ETKTGTCGY 9
+++ G CGY
Sbjct: 14 QSQPGPCGY 22
>sp|POL_XMRV6|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP62)
Query: 5 GTCGYC 10
GT G+C
Sbjct: 962 GTAGFC 967
>sp|POL_XMRV4|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP42)
Query: 5 GTCGYC 10
GT G+C
Sbjct: 962 GTAGFC 967
>sp|POL_XMRV3|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP35)
Query: 5 GTCGYC 10
GT G+C
Sbjct: 962 GTAGFC 967
>sp|POLG_HRV8A|GENOME polyprotein|Human rhinovirus A serotype 89
Query: 2 TKTGTCG 8
TK G CG
Sbjct: 1663 TKAGYCG 1669
>sp|GK_HHV19|ENVELOPE glycoprotein K|Human herpesvirus 1 (strain R19)
Query: 4 TGTCGYC 10
+G CG C
Sbjct: 293 SGVCGRC 299
>sp|SPIKE_CVHNL|SPIKE glycoprotein|Human coronavirus NL63 (HCoV-NL63)
Query: 4 TGTCGYC 10
TG CG C
Sbjct: 1321 TGCCGCC 1327
>sp|GK_HHV1K|ENVELOPE glycoprotein K|Human herpesvirus 1 (strain KOS)
Query: 4 TGTCGYC 10
+G CG C
Sbjct: 293 SGVCGRC 299
>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus
Query: 3 KTGTCG 8
K GTCG
Sbjct: 47 KNGTCG 52
>sp|GK_HHV1R|ENVELOPE glycoprotein K|Human herpesvirus 1 (strain R15)
Query: 4 TGTCGYC 10
+G CG C
Sbjct: 293 SGVCGRC 299
>sp|GK_HHV1M|ENVELOPE glycoprotein K|Human herpesvirus 1 (strain MP)
Query: 4 TGTCGYC 10
+G CG C
Sbjct: 293 SGVCGRC 299
>sp|GK_HHV11|ENVELOPE glycoprotein K|Human herpesvirus 1 (strain 17)
Query: 4 TGTCGYC 10
+G CG C
Sbjct: 293 SGVCGRC 299
>sp|RDRP_I96A0|RNA-DIRECTED RNA polymerase catalytic subunit|Influenza A virus (strain
Query: 3 KTGTCGY 9
+TGTC +
Sbjct: 486 RTGTCEF 492
>sp|NSP1N_ROTJ1|NON-STRUCTURAL protein 1|Rotavirus X (strain
Query: 3 KTGTCGYC 10
+ G+CG C
Sbjct: 194 REGSCGIC 201
>sp|NSP1N_ROTB2|NON-STRUCTURAL protein 1|Rotavirus X (isolate
Query: 3 KTGTCGYC 10
+ G+CG C
Sbjct: 194 REGSCGIC 201
>sp|LRP1_HHV1F|LATENCY-RELATED protein 1|Human herpesvirus 1 (strain F)
Query: 2 TKTGTCGYC 10
T TG YC
Sbjct: 147 TNTGGVPYC 155
>sp|U95_HHV6U|UNCHARACTERIZED protein U95|Human herpesvirus 6A (strain Uganda-1102)
Query: 6 TCGYC 10
TCG C
Sbjct: 691 TCGMC 695
>sp|R1A_SARS|REPLICASE polyprotein 1a|Severe acute respiratory syndrome coronavirus
Query: 3 KTGTCG 8
K GTCG
Sbjct: 47 KNGTCG 52
>sp|VE2_HPV66|REGULATORY protein E2|Human papillomavirus 66
Query: 4 TGTCGYC 10
G CG+C
Sbjct: 140 NGECGWC 146
23|Sequence|111|124|TCGYCGLQFRQHHH
>sp|DPOL_ADE07|DNA polymerase|Human adenovirus B serotype 7
Query: 2 CGYCGLQFRQHH 13
C YCG ++ H
Sbjct: 153 CEYCGRLYKHKH 164
>sp|POLN_SAGV|POLYPROTEIN P1234|Sagiyama virus (SAGV)
Query: 8 QFRQHHH 14
++RQHH+
Sbjct: 1222 EYRQHHY 1228
>sp|POLN_GETV|POLYPROTEIN P1234|Getah virus (GETV)
Query: 8 QFRQHHH 14
++RQHH+
Sbjct: 1222 EYRQHHY 1228
>sp|PG204_VACCD|SOLUBLE interferon alpha/beta receptor OPG204|Vaccinia virus (strain Dairen
Query: 4 YCGLQFRQHHH 14
YCG+ + +H++
Sbjct: 171 YCGILYAKHYN 181
>sp|PG204_VARV|SOLUBLE interferon alpha/beta receptor OPG204|Variola virus
Query: 4 YCGLQFRQHHH 14
YCG+ + +H++
Sbjct: 174 YCGIIYAKHYN 184
>sp|PG204_VAR67|SOLUBLE interferon alpha/beta receptor OPG204|Variola virus (isolate
Query: 4 YCGLQFRQHHH 14
YCG+ + +H++
Sbjct: 174 YCGIIYAKHYN 184
>sp|PG204_VACCC|SOLUBLE interferon alpha/beta receptor OPG204|Vaccinia virus (strain
Query: 4 YCGLQFRQHHH 14
YCG+ + +H++
Sbjct: 173 YCGILYAKHYN 183
>sp|VE2_HPV18|REGULATORY protein E2|Human papillomavirus type 18
Query: 3 GYCGLQFRQH 12
G+CGL +QH
Sbjct: 250 GHCGLAEKQH 259
>sp|PG204_MONPV|SOLUBLE interferon alpha/beta receptor OPG204|Monkeypox virus (MPXV)
Query: 4 YCGLQFRQHHH 14
YCG+ + H++
Sbjct: 171 YCGILYANHYN 181
>sp|VE8E2_HPV18|PROTEIN E8^E2C|Human papillomavirus type 18
Query: 3 GYCGLQFRQH 12
G+CGL +QH
Sbjct: 56 GHCGLAEKQH 65
>sp|PORTL_EBVG|PORTAL protein|Epstein-Barr virus (strain GD1) (HHV-4)
Query: 4 YCGLQFRQH 12
YCG + R H
Sbjct: 228 YCGRRIRLH 236
>sp|PORTL_EBVB9|PORTAL protein|Epstein-Barr virus (strain B95-8) (HHV-4)
Query: 4 YCGLQFRQH 12
YCG + R H
Sbjct: 228 YCGRRIRLH 236
>sp|PORTL_EBVA8|PORTAL protein|Epstein-Barr virus (strain AG876) (HHV-4)
Query: 4 YCGLQFRQH 12
YCG + R H
Sbjct: 228 YCGRRIRLH 236
>sp|L_NIPAV|RNA-DIRECTED RNA polymerase L|Nipah virus
Query: 4 YCGLQF 9
+CG+QF
Sbjct: 450 FCGIQF 455
>sp|L_HENDH|RNA-DIRECTED RNA polymerase L|Hendra virus (isolate Horse/Autralia/Hendra/1994)
Query: 4 YCGLQF 9
+CG+QF
Sbjct: 450 FCGIQF 455
>sp|NSP1_ROTHC|NON-STRUCTURAL protein 1|Rotavirus C (isolate RVC/Human/United
Query: 2 CGYCGLQFR 10
C YCG++ +
Sbjct: 52 CDYCGIRHK 60
>sp|POLN_EEVVM|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain
Query: 8 QFRQHHH 14
Q+R HH+
Sbjct: 1219 QYRYHHY 1225
>sp|GG_HHV2H|ENVELOPE glycoprotein G|Human herpesvirus 2 (strain HG52)
Query: 3 GYCGLQFRQ 11
G+ GL+FR+
Sbjct: 242 GFRGLRFRE 250
>sp|GG_HHV2B|ENVELOPE glycoprotein G|Human herpesvirus 2 (strain B4327UR)
Query: 3 GYCGLQFRQ 11
G+ GL+FR+
Sbjct: 242 GFRGLRFRE 250
>sp|R1A_SARS2|REPLICASE polyprotein 1a|Severe acute respiratory syndrome coronavirus
Query: 1 TCGYCGLQ 8
TC +CG +
Sbjct: 340 TCEFCGTE 347
>sp|R1AB_SARS2|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus
Query: 1 TCGYCGLQ 8
TC +CG +
Sbjct: 340 TCEFCGTE 347
>sp|DPOL_ADE12|DNA polymerase|Human adenovirus A serotype 12
Query: 2 CGYCG 6
C YCG
Sbjct: 924 CSYCG 928
>sp|MATRX_RABVB|MATRIX protein|Rabies virus (strain silver-haired bat-associated)
Query: 2 CGYCGLQFRQHHH 14
CG G FR H
Sbjct: 62 CGPNGYSFRTLRH 74
>sp|POLN_BFV|POLYPROTEIN P1234|Barmah forest virus (BFV)
Query: 9 FRQHHH 14
FR HH+
Sbjct: 1223 FRNHHY 1228
>sp|POLG_POL1S|GENOME polyprotein|Poliovirus type 1 (strain Sabin)
Query: 3 GYCGLQFRQHH 13
G CG R HH
Sbjct: 988 GDCGGILRCHH 998
>sp|POLG_POL1M|GENOME polyprotein|Poliovirus type 1 (strain Mahoney)
Query: 3 GYCGLQFRQHH 13
G CG R HH
Sbjct: 988 GDCGGILRCHH 998
>sp|GH_VZVO|ENVELOPE glycoprotein H|Varicella-zoster virus (strain Oka vaccine)
Query: 2 CGYCGLQFRQH 12
C YCG F ++
Sbjct: 724 CLYCGSVFLRY 734
>sp|GH_VZVD|ENVELOPE glycoprotein H|Varicella-zoster virus (strain Dumas) (HHV-3)
Query: 2 CGYCGLQFRQH 12
C YCG F ++
Sbjct: 724 CLYCGSVFLRY 734
>sp|POL_HTLV2|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 2
Query: 1 TCGYCGLQFRQHH 13
TC C QHH
Sbjct: 1198 TCHTCQTINSQHH 1210
>sp|R1A_SARS|REPLICASE polyprotein 1a|Severe acute respiratory syndrome coronavirus
Query: 1 TCGYCGLQ 8
TC +CG +
Sbjct: 340 TCEHCGTE 347
>sp|BFRF2_EBVB9|LATE gene expression regulator BFRF2|Epstein-Barr virus (strain B95-8)
Query: 2 CGYC 5
CGYC
Sbjct: 392 CGYC 395
>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus
Query: 1 TCGYCGLQ 8
TC +CG +
Sbjct: 340 TCEHCGTE 347
>sp|US10_HHV2H|VIRION protein US10|Human herpesvirus 2 (strain HG52)
Query: 1 TCGYCGL 7
TC Y GL
Sbjct: 266 TCSYAGL 272
>sp|US10_HHV1F|VIRION protein US10|Human herpesvirus 1 (strain F)
Query: 1 TCGYCGL 7
TC Y GL
Sbjct: 273 TCSYAGL 279
>sp|US10_HHV11|VIRION protein US10|Human herpesvirus 1 (strain 17)
Query: 1 TCGYCGL 7
TC Y GL
Sbjct: 282 TCSYAGL 288
>sp|POLS_SINDV|STRUCTURAL polyprotein|Sindbis virus (SINV)
Query: 1 TCGYC 5
TC YC
Sbjct: 343 TCSYC 347
>sp|POLS_SINDO|STRUCTURAL polyprotein|Sindbis virus subtype Ockelbo (strain
Query: 1 TCGYC 5
TC YC
Sbjct: 343 TCSYC 347
>sp|UL49_HHV8P|PROTEIN ORF66|Human herpesvirus 8 type P
Query: 2 CGYCG 6
C YCG
Sbjct: 341 CSYCG 345
>sp|VEMP_CVHN5|ENVELOPE small membrane protein|Human coronavirus HKU1 (isolate N5)
Query: 2 CGYCGL 7
CG+C +
Sbjct: 44 CGFCNI 49
>sp|VEMP_CVHN2|ENVELOPE small membrane protein|Human coronavirus HKU1 (isolate N2)
Query: 2 CGYCGL 7
CG+C +
Sbjct: 44 CGFCNI 49
>sp|POLSF_SINDV|FRAMESHIFTED structural polyprotein|Sindbis virus (SINV)
Query: 1 TCGYC 5
TC YC
Sbjct: 343 TCSYC 347