NDUS3_HUMAN Blast OutputR
Archaea
1|SequenceR|10|1|WLRAVAAAAM

>sp|COFH_HALMA|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Haloarcula marismortui (strain ATCC

Query: 1 WLRAVAAAA 9
WL A+AAAA
Sbjct: 262 WLEAMAAAA 270




2|SequenceR|15|6|LIGRWWLRAV

>sp|Y3504_METJA|UNCHARACTERIZED protein MJECL04|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IGRWWLRA 9
IGRWW R
Sbjct: 355 IGRWWHRG 362


>sp|AATA_THEPD|A-TYPE ATP synthase subunit A|Thermofilum pendens (strain DSM 2475

Query: 1 LIGRWWLRAV 10
+I RWW++ V
Sbjct: 443 IIERWWVKNV 452


>sp|AMPP2_ARCFU|AMP phosphorylase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 IGRWW 6
+GRWW
Sbjct: 500 MGRWW 504


>sp|SYTC_SULTO|THREONINE--TRNA ligase catalytic subunit|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 IGRWW 6
+GRWW
Sbjct: 368 LGRWW 372


>sp|SYTC_SACI6|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain M.16.4 /

Query: 2 IGRWW 6
+GRWW
Sbjct: 373 LGRWW 377


>sp|SYTC_SACS2|THREONINE--TRNA ligase catalytic subunit|Saccharolobus solfataricus (strain ATCC

Query: 2 IGRWW 6
+GRWW
Sbjct: 373 LGRWW 377


>sp|SYTC_SACI7|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain Y.G.57.14

Query: 2 IGRWW 6
+GRWW
Sbjct: 373 LGRWW 377


>sp|SYTC_SACI4|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain M.14.25 /

Query: 2 IGRWW 6
+GRWW
Sbjct: 373 LGRWW 377


>sp|SYTC_SACI3|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain M.16.27)

Query: 2 IGRWW 6
+GRWW
Sbjct: 373 LGRWW 377


>sp|SYTC_SACI2|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain L.S.2.15

Query: 2 IGRWW 6
+GRWW
Sbjct: 373 LGRWW 377


>sp|SYTC_SACI1|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain Y.N.15.51

Query: 2 IGRWW 6
+GRWW
Sbjct: 373 LGRWW 377


>sp|Y1631_METJA|UNCHARACTERIZED protein MJ1631|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 RWWLRA 9
RWW++A
Sbjct: 488 RWWMKA 493


>sp|ACSA_METTP|ACETYL-COENZYME A synthetase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 IGRWW 6
IGRWW
Sbjct: 352 IGRWW 356


>sp|CMR1A_PYRFU|CRISPR system Cmr subunit Cmr1-1|Pyrococcus furiosus (strain ATCC 43587

Query: 4 RWWLRAV 10
RWW RA+
Sbjct: 37 RWWFRAL 43


>sp|AMT1_METJA|AMMONIUM transporter Amt1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IGRWWLRAV 10
+G WW++ V
Sbjct: 86 LGAWWMKMV 94


>sp|CMR1B_PYRFU|CRISPR system Cmr subunit Cmr1-2|Pyrococcus furiosus (strain ATCC 43587

Query: 4 RWWLRAV 10
RWW RA+
Sbjct: 36 RWWFRAL 42


>sp|BE_THEKO|1,4-ALPHA-GLUCAN branching enzyme TK1436|Thermococcus kodakarensis (strain ATCC

Query: 1 LIGRWWLRAV 10
L G WW V
Sbjct: 357 LFGHWWFEGV 366


>sp|NADM_METM6|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Methanococcus maripaludis (strain C6 /

Query: 1 LIGRW 5
LIGRW
Sbjct: 5 LIGRW 9


>sp|NADM_METM7|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Methanococcus maripaludis (strain C7 /

Query: 1 LIGRW 5
LIGRW
Sbjct: 5 LIGRW 9


>sp|NADM_METM5|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Methanococcus maripaludis (strain C5 /

Query: 1 LIGRW 5
LIGRW
Sbjct: 5 LIGRW 9


>sp|CMR1_SACS2|CRISPR system CMR subunit Cmr1|Saccharolobus solfataricus (strain ATCC

Query: 4 RWWLRAV 10
RWW R +
Sbjct: 43 RWWNRVL 49


>sp|NADM_METMP|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Methanococcus maripaludis (strain DSM 14266

Query: 1 LIGRW 5
LIGRW
Sbjct: 5 LIGRW 9


>sp|ACSA_METSH|ACETYL-COENZYME A synthetase|Methanothrix soehngenii (Methanosaeta concilii)

Query: 3 GRWW 6
GRWW
Sbjct: 364 GRWW 367


>sp|ARTA_NATPD|ARCHAEOSORTASE A|Natronomonas pharaonis (strain ATCC 35678

Query: 3 GRWWLRAV 10
G WWL AV
Sbjct: 48 GAWWLFAV 55


>sp|KTHY_METHJ|PROBABLE thymidylate kinase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 RWWLRAV 10
R WLRAV
Sbjct: 108 RTWLRAV 114


>sp|SYP_IGNH4|PROLINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 GRWWLR 8
+WW+R
Sbjct: 468 AKWWIR 473




3|SequenceR|20|11|LASAGLIGRW

>sp|DP2L_THEKO|DNA polymerase II large subunit|Thermococcus kodakarensis (strain ATCC

Query: 3 SAGLIGR 9
SAG+IGR
Sbjct: 934 SAGIIGR 940


>sp|COOS_ARCFU|CARBON monoxide dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 AGLIGRW 10
AG++G W
Sbjct: 307 AGIVGNW 313


>sp|DP2L_METVS|DNA polymerase II large subunit|Methanococcus vannielii (strain ATCC

Query: 3 SAGLIGR 9
SAG++GR
Sbjct: 852 SAGMVGR 858


>sp|DP2L_METMP|DNA polymerase II large subunit|Methanococcus maripaludis (strain DSM

Query: 3 SAGLIGR 9
SAG++GR
Sbjct: 852 SAGMVGR 858


>sp|DP2L_METM7|DNA polymerase II large subunit|Methanococcus maripaludis (strain C7 /

Query: 3 SAGLIGR 9
SAG++GR
Sbjct: 852 SAGMVGR 858


>sp|DP2L_METM6|DNA polymerase II large subunit|Methanococcus maripaludis (strain C6 /

Query: 3 SAGLIGR 9
SAG++GR
Sbjct: 852 SAGMVGR 858


>sp|DP2L_METM5|DNA polymerase II large subunit|Methanococcus maripaludis (strain C5 /

Query: 3 SAGLIGR 9
SAG++GR
Sbjct: 852 SAGMVGR 858


>sp|DP2L_METJA|DNA polymerase II large subunit|Methanocaldococcus jannaschii (strain

Query: 3 SAGLIGR 9
SAG++GR
Sbjct: 858 SAGMVGR 864


>sp|DP2L_PYRHO|DNA polymerase II large subunit|Pyrococcus horikoshii (strain ATCC

Query: 3 SAGLIGR 9
SAG++GR
Sbjct: 922 SAGIVGR 928


>sp|DP2L_PYRFU|DNA polymerase II large subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 3 SAGLIGR 9
SAG++GR
Sbjct: 923 SAGIVGR 929


>sp|DP2L_PYRAB|DNA polymerase II large subunit|Pyrococcus abyssi (strain GE5 /

Query: 3 SAGLIGR 9
SAG++GR
Sbjct: 925 SAGIVGR 931


>sp|HIS4_METTH|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanothermobacter

Query: 4 AGLIGRW 10
AG+ GRW
Sbjct: 33 AGVAGRW 39


>sp|MPTE_PYRFU|6-HYDROXYMETHYL-7,8-DIHYDROPTERIN pyrophosphokinase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 AGLIGRW 10
+G++G+W
Sbjct: 183 SGIVGKW 189




4|SequenceR|25|16|GTGRTLASAG

>sp|PYRG_NATPD|CTP synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 TGRTLASAG 10
TGR LA+AG
Sbjct: 36 TGRLLANAG 44


>sp|RS19E_AERPE|SMALL ribosomal subunit protein eS19|Aeropyrum pernix (strain ATCC 700893

Query: 1 GTGRTLASAG 10
G GRT++ AG
Sbjct: 118 GRGRTISPAG 127


>sp|PSTB1_NATPD|PHOSPHATE import ATP-binding protein PstB|Natronomonas pharaonis (strain

Query: 1 GTGRTLASA 9
G+GRT+ SA
Sbjct: 32 GSGRTVISA 40


>sp|PYRG_HALWD|CTP synthase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 TGRTLASAG 10
TGR L++AG
Sbjct: 37 TGRLLSNAG 45


>sp|GATD_PYRHO|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrococcus horikoshii (strain ATCC

Query: 1 GTGRTLAS 8
GTG T+AS
Sbjct: 98 GTGGTIAS 105


>sp|GATD_PYRFU|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GTGRTLAS 8
GTG T+AS
Sbjct: 98 GTGGTIAS 105


>sp|GATD_PYRAB|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrococcus abyssi (strain GE5 /

Query: 1 GTGRTLAS 8
GTG T+AS
Sbjct: 98 GTGGTIAS 105




5|SequenceR|30|21|LVSPRGTGRT

>sp|CDC62_METMA|ORC1-TYPE DNA replication protein 2|Methanosarcina mazei (strain ATCC

Query: 1 LVSPRGTGRT 10
LV P GTG+T
Sbjct: 57 LVGPPGTGKT 66


>sp|CDC62_METAC|ORC1-TYPE DNA replication protein 2|Methanosarcina acetivorans (strain ATCC

Query: 1 LVSPRGTGRT 10
LV P GTG+T
Sbjct: 57 LVGPPGTGKT 66


>sp|CAS3_METTH|CRISPR-ASSOCIATED nuclease/helicase Cas3|Methanothermobacter thermautotrophicus

Query: 1 LVSPRGTGRT 10
LV+P G+G+T
Sbjct: 297 LVAPTGSGKT 306


>sp|Y1156_METJA|CELL division cycle protein 48|Methanocaldococcus jannaschii (strain

Query: 1 LVSPRGTGRT 10
LV P GTG+T
Sbjct: 218 LVGPPGTGKT 227


Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 491 LFGPPGTGKT 500


>sp|HIS8_METTH|HISTIDINOL-PHOSPHATE aminotransferase|Methanothermobacter thermautotrophicus (strain

Query: 1 LVSPRGTGRT 10
L+ RGTGRT
Sbjct: 313 LIDVRGTGRT 322


>sp|HELS_SACS9|ATP-DEPENDENT DNA helicase Hel308|Saccharolobus solfataricus (strain 98/2)

Query: 1 LVSPRGTGRT 10
L SP G+G+T
Sbjct: 51 LTSPTGSGKT 60


>sp|HELS_SACI5|ATP-DEPENDENT DNA helicase Hel308|Saccharolobus islandicus (strain REY15A)

Query: 1 LVSPRGTGRT 10
L SP G+G+T
Sbjct: 51 LTSPTGSGKT 60


>sp|HELS_SACS2|ATP-DEPENDENT DNA helicase Hel308|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LVSPRGTGRT 10
L SP G+G+T
Sbjct: 44 LTSPTGSGKT 53


>sp|LON_METBF|LON protease|Methanosarcina barkeri (strain Fusaro /

Query: 1 LVSPRGTGRT 10
L+ P GTG+T
Sbjct: 361 LIGPPGTGKT 370


>sp|RFCL_METTH|REPLICATION factor C large subunit|Methanothermobacter thermautotrophicus

Query: 1 LVSPRGTGRT 10
LV P GTG+T
Sbjct: 43 LVGPPGTGKT 52


>sp|Y1519_METJA|UNCHARACTERIZED protein MJ1519|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 584 LTGPAGTGKT 593


>sp|LON_METST|LON protease|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 LVSPRGTGRT 10
V P GTG+T
Sbjct: 386 FVGPPGTGKT 395


>sp|Y132_PYRHO|PUTATIVE ABC transporter ATP-binding protein|Pyrococcus horikoshii (strain

Query: 1 LVSPRGTGRT 10
+V P G+G+T
Sbjct: 32 IVGPNGSGKT 41


>sp|Y130_PYRAB|PUTATIVE ABC transporter ATP-binding protein|Pyrococcus abyssi (strain GE5

Query: 1 LVSPRGTGRT 10
+V P G+G+T
Sbjct: 32 IVGPNGSGKT 41


>sp|XPD_THEAC|ATP-DEPENDENT DNA helicase XPD|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 LVSPRGTGRT 10
L SP G+G+T
Sbjct: 9 LESPTGSGKT 18


>sp|Y1579_ARCFU|UNCHARACTERIZED protein AF_1579|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 VSPRGTG 8
+SPRG G
Sbjct: 143 ISPRGAG 149


>sp|Y068_PYRFU|PUTATIVE ABC transporter ATP-binding protein|Pyrococcus furiosus (strain

Query: 1 LVSPRGTGRT 10
+V P G+G+T
Sbjct: 32 VVGPNGSGKT 41


>sp|LHRC_METJA|ATP-DEPENDENT helicase Lhr-Core|Methanocaldococcus jannaschii (strain ATCC

Query: 1 LVSPRGTGRT 10
+ SP G+G+T
Sbjct: 54 ICSPTGSGKT 63


>sp|RFCL_NANEQ|REPLICATION factor C large subunit|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 73 LYGPPGTGKT 82


>sp|PAN_METMP|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain DSM 14266

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 187 LYGPPGTGKT 196


>sp|PAN_METM7|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain C7 /

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 187 LYGPPGTGKT 196


>sp|PAN1_HALVD|PROTEASOME-ACTIVATING nucleotidase 1|Haloferax volcanii (strain ATCC 29605

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 189 LYGPPGTGKT 198


>sp|PAN_METM6|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain C6 /

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 187 LYGPPGTGKT 196


>sp|PAN_METM5|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain C5 /

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 187 LYGPPGTGKT 196


>sp|RFCL_METS3|REPLICATION factor C large subunit|Methanobrevibacter smithii (strain ATCC

Query: 1 LVSPRGTGRT 10
LV P G G+T
Sbjct: 43 LVGPPGIGKT 52


>sp|Y394_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 1 LVSPRGTGRT 10
LV P G+G++
Sbjct: 38 LVGPNGSGKS 47


>sp|RGYR_PYRAE|REVERSE gyrase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 LVSPRGTGRT 10
+V+P G+G+T
Sbjct: 103 IVAPTGSGKT 112


>sp|Y1674_METJA|CRISPR-ASSOCIATED protein MJ1674|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LVSPRGTGRT 10
L+SP G G T
Sbjct: 5 LISPLGVGDT 14


>sp|RFCL_METJA|REPLICATION factor C large subunit|Methanocaldococcus jannaschii (strain ATCC

Query: 1 LVSPRGTGRT 10
LV P G G+T
Sbjct: 44 LVGPPGCGKT 53


>sp|RFCL_META3|REPLICATION factor C large subunit|Methanococcus aeolicus (strain ATCC

Query: 1 LVSPRGTGRT 10
LV P G G+T
Sbjct: 43 LVGPPGCGKT 52


>sp|RAD50_METKA|DNA double-strand break repair Rad50|Methanopyrus kandleri (strain

Query: 1 LVSPRGTGRT 10
LV P G G+T
Sbjct: 27 LVGPNGAGKT 36


>sp|LHRC_SULAC|ATP-DEPENDENT helicase Lhr-Core|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 SPRGTGRT 10
SP G+G+T
Sbjct: 54 SPTGSGKT 61


>sp|LHRC_SACS2|ATP-DEPENDENT helicase Lhr-Core|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 SPRGTGRT 10
SP G+G+T
Sbjct: 52 SPTGSGKT 59


>sp|DPCKG_STAMF|GTP-DEPENDENT dephospho-CoA kinase|Staphylothermus marinus (strain ATCC 43588

Query: 1 LVSPRGT 7
LV+PRGT
Sbjct: 79 LVNPRGT 85


>sp|PAN2_HALVD|PROTEASOME-ACTIVATING nucleotidase 2|Haloferax volcanii (strain ATCC 29605

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 191 LYGPPGTGKT 200


>sp|CEDB_SULAC|DNA import protein CedB|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 LVSPRGTGRT 10
++ P G+G+T
Sbjct: 284 IIGPTGSGKT 293


>sp|LIVG_ARCFU|PROBABLE branched-chain amino acid transport|Archaeoglobus fulgidus

Query: 1 LVSPRGTGRT 10
++ P G+G+T
Sbjct: 34 VIGPNGSGKT 43


>sp|PAN_METVS|PROTEASOME-ACTIVATING nucleotidase|Methanococcus vannielii (strain ATCC 35089

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 187 LYGPPGTGKT 196


>sp|PAN_SACS2|PROTEASOME-ACTIVATING nucleotidase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 173 LYGPPGTGKT 182


>sp|LHRC2_THEBM|ATP-DEPENDENT helicase Lhr-Core protein 2|Thermococcus barophilus (strain DSM

Query: 3 SPRGTGRT 10
SP G+G+T
Sbjct: 54 SPTGSGKT 61


>sp|ILVC_PYRAR|KETOL-ACID reductoisomerase (NADP(+))|Pyrobaculum arsenaticum (strain DSM

Query: 1 LVSPRGTGR 9
+V+P+G GR
Sbjct: 127 MVAPKGPGR 135


>sp|PAN_SACI7|PROTEASOME-ACTIVATING nucleotidase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 173 LYGPPGTGKT 182


>sp|PAN_SACI6|PROTEASOME-ACTIVATING nucleotidase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 173 LYGPPGTGKT 182


>sp|PAN_SACI4|PROTEASOME-ACTIVATING nucleotidase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 173 LYGPPGTGKT 182


>sp|PAN_SACI3|PROTEASOME-ACTIVATING nucleotidase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 173 LYGPPGTGKT 182


>sp|PAN_SACI2|PROTEASOME-ACTIVATING nucleotidase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 173 LYGPPGTGKT 182


>sp|PAN_SACI1|PROTEASOME-ACTIVATING nucleotidase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 173 LYGPPGTGKT 182


>sp|PAN_METKA|PROTEASOME-ACTIVATING nucleotidase|Methanopyrus kandleri (strain AV19 /

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 218 LYGPPGTGKT 227


>sp|PAN_METJA|PROTEASOME-ACTIVATING nucleotidase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 209 LYGPPGTGKT 218


>sp|PAN_SULTO|PROTEASOME-ACTIVATING nucleotidase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 173 LYGPPGTGKT 182


>sp|RGYRB_NANEQ|REVERSE gyrse subunit B|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 LVSPRGTGRT 10
+++P G G+T
Sbjct: 98 IIAPTGMGKT 107


>sp|SAV_SULAC|PROTEIN SAV|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 526 LFGPPGTGKT 535


Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 251 LYGPPGTGKT 260


>sp|ANTRA_HALVD|PROBABLE anion import ATP-binding protein|Haloferax volcanii (strain ATCC

Query: 1 LVSPRGTGRT 10
+V P GTG+T
Sbjct: 66 VVGPSGTGKT 75


>sp|LHRC_METTH|ATP-DEPENDENT helicase Lhr-Core|Methanothermobacter thermautotrophicus (strain

Query: 3 SPRGTGRT 10
SP G+G+T
Sbjct: 54 SPTGSGKT 61


>sp|RFCS_PICTO|REPLICATION factor C small subunit|Picrophilus torridus (strain ATCC 700027

Query: 4 PRGTGRT 10
P GTG+T
Sbjct: 44 PAGTGKT 50


>sp|RFCS_HALSA|REPLICATION factor C small subunit|Halobacterium salinarum (strain ATCC

Query: 4 PRGTGRT 10
P GTG+T
Sbjct: 51 PAGTGKT 57


>sp|RFCS_HALS3|REPLICATION factor C small subunit|Halobacterium salinarum (strain ATCC 29341

Query: 4 PRGTGRT 10
P GTG+T
Sbjct: 51 PAGTGKT 57


>sp|RAD50_NANEQ|DNA double-strand break repair Rad50|Nanoarchaeum equitans (strain

Query: 1 LVSPRGTGRT 10
++ P G+G+T
Sbjct: 29 ILGPNGSGKT 38


>sp|Y1662_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 1 LVSPRGTGRT 10
++ P G G+T
Sbjct: 290 IIGPSGVGKT 299


>sp|PAN_METMJ|PROTEASOME-ACTIVATING nucleotidase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 192 LYGPPGTGKT 201


>sp|CDC6Z_METTF|ORC1-TYPE DNA replication protein|Methanothermobacter thermautotrophicus

Query: 1 LVSPRGTGRT 10
+V P G+G+T
Sbjct: 52 IVGPPGSGKT 61


>sp|PAN_METTH|PROTEASOME-ACTIVATING nucleotidase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 190 LYGPPGTGKT 199


>sp|PAN_METAR|PROTEASOME-ACTIVATING nucleotidase|Methanocella arvoryzae (strain DSM 22066

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 198 LYGPPGTGKT 207


>sp|PSTB2_NATPD|PHOSPHATE import ATP-binding protein PstB|Natronomonas pharaonis (strain

Query: 1 LVSPRGTGRT 10
++ P GTG+T
Sbjct: 66 IIGPSGTGKT 75


>sp|Y1297_ARCFU|CELL division cycle protein 48|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 494 LFGPPGTGKT 503


Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 221 LYGPPGTGKT 230


>sp|RGYRB_METKA|REVERSE gyrase subunit B|Methanopyrus kandleri (strain AV19 /

Query: 1 LVSPRGTGRT 10
+++P GTG+T
Sbjct: 176 ILAPTGTGKT 185


>sp|CDC6V_METTF|ORC1-TYPE DNA replication protein|Methanothermobacter thermautotrophicus

Query: 1 LVSPRGTGRT 10
+V P G+G+T
Sbjct: 52 IVGPPGSGKT 61


>sp|CDC69_HALSA|ORC1-TYPE DNA replication protein 9|Halobacterium salinarum (strain ATCC

Query: 1 LVSPRGTGRT 10
+ P GTG+T
Sbjct: 57 VTGPSGTGKT 66


>sp|PAN_METHJ|PROTEASOME-ACTIVATING nucleotidase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 192 LYGPPGTGKT 201


>sp|AMPPA_PYRAB|AMP phosphorylase|Pyrococcus abyssi (strain GE5 /

Query: 2 VSPRGTGR 9
V+PRG G+
Sbjct: 367 VAPRGMGK 374


>sp|RFCS_HALMA|REPLICATION factor C small subunit|Haloarcula marismortui (strain ATCC 43049

Query: 4 PRGTGRT 10
P GTG+T
Sbjct: 55 PAGTGKT 61


>sp|PAN_ARCFU|PROTEASOME-ACTIVATING nucleotidase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 180 LYGPPGTGKT 189


>sp|SRP54_ACIAM|SIGNAL recognition particle 54 kDa|Acidianus ambivalens (Desulfurolobus

Query: 1 LVSPRGTGRT 10
LV +GTG+T
Sbjct: 103 LVGVQGTGKT 112


>sp|HEM3_PYRNV|PROBABLE porphobilinogen deaminase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 LVSPRG 6
LVSPRG
Sbjct: 105 LVSPRG 110


>sp|SRP54_METS5|SIGNAL recognition particle 54 kDa|Metallosphaera sedula (strain ATCC

Query: 1 LVSPRGTGRT 10
LV +GTG+T
Sbjct: 101 LVGVQGTGKT 110


>sp|PAN1_HALSA|PROTEASOME-ACTIVATING nucleotidase 1|Halobacterium salinarum (strain ATCC 700922

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 187 LHGPPGTGKT 196


>sp|GVPN1_HALSA|GAS vesicle ATPase GvpN1|Halobacterium salinarum (strain ATCC 700922

Query: 1 LVSPRGTGRT 10
L+ P G G+T
Sbjct: 89 LIGPTGCGKT 98


>sp|RAD25_HALSA|PUTATIVE DNA 3'-5' helicase Rad25|Halobacterium salinarum (strain ATCC

Query: 1 LVSPRGTGRT 10
LV P G+G+T
Sbjct: 264 LVGPPGSGKT 273


>sp|CDCH_HALSA|PROTEIN CdcH|Halobacterium salinarum (strain ATCC 700922

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 501 LYGPPGTGKT 510


>sp|VAT_THEAC|VCP-LIKE ATPase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 229 LYGPPGTGKT 238


>sp|PAN2_HALSA|PROTEASOME-ACTIVATING nucleotidase 2|Halobacterium salinarum (strain ATCC 700922

Query: 1 LVSPRGTGRT 10
L P GTG+T
Sbjct: 191 LHGPPGTGKT 200


>sp|HMU_HALWD|HALOMUCIN walsbyi (strain DSM 16790

Query: 1 LVSPRGTG 8
+V P GTG
Sbjct: 7823 IVDPEGTG 7830




6|SequenceR|35|26|RVPLLLVSPR

>sp|RFCL_METS3|REPLICATION factor C large subunit|Methanobrevibacter smithii (strain ATCC

Query: 3 PLLLVSP 9
PLLLV P
Sbjct: 40 PLLLVGP 46


>sp|COPB_ARCFU|COPPER-EXPORTING P-type ATPase B|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 VPLLLVSP 9
+P+L++SP
Sbjct: 70 IPILILSP 77


>sp|AATI_METTH|A-TYPE ATP synthase subunit I|Methanothermobacter thermautotrophicus

Query: 2 VPLLLVSPR 10
VP+LL +PR
Sbjct: 349 VPVLLDNPR 357


>sp|RNP3_PYRAB|RIBONUCLEASE P protein component 3|Pyrococcus abyssi (strain GE5 /

Query: 2 VPLLLVSPR 10
V +LLV+PR
Sbjct: 55 VAILLVNPR 63


>sp|RFCL_METTH|REPLICATION factor C large subunit|Methanothermobacter thermautotrophicus

Query: 3 PLLLVSP 9
PLLLV P
Sbjct: 40 PLLLVGP 46




7|SequenceR|40|31|GASERRVPLL

>sp|MEND_HALLT|2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE synthase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 ASERRVPLL 10
ASE RVPLL
Sbjct: 93 ASEARVPLL 101


>sp|THIM_METB6|HYDROXYETHYLTHIAZOLE kinase|Methanoregula boonei (strain DSM 21154

Query: 2 ASERRVPLL 10
A+ER++P++
Sbjct: 84 ANERKIPII 92


>sp|IF2P_AERPE|PROBABLE translation initiation factor IF-2|Aeropyrum pernix (strain ATCC

Query: 3 SERRVPLL 10
ERRVP L
Sbjct: 130 KERRVPFL 137




8|SequenceR|45|36|PRTDAGASER

>sp|MVP_METJA|HYPERPOLARIZATION-ACTIVATED voltage-gated potassium channel|Methanocaldococcus jannaschii

Query: 1 PRTDAG 6
P+TDAG
Sbjct: 178 PKTDAG 183


>sp|MTAB_METBF|METHANOL--CORRINOID protein co-methyltransferase|Methanosarcina barkeri (strain

Query: 1 PRTDAGASE 9
PR +AGAS+
Sbjct: 47 PRPEAGASK 55


>sp|TRUA_METKA|TRNA pseudouridine synthase A|Methanopyrus kandleri (strain AV19 /

Query: 2 RTDAGASER 10
RTDAGA R
Sbjct: 47 RTDAGAHAR 55


>sp|RFCL_AERPE|REPLICATION factor C large subunit|Aeropyrum pernix (strain ATCC 700893

Query: 1 PRTDAGASE 9
PR DAG E
Sbjct: 121 PREDAGGIE 129


>sp|SEPS_METTP|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 PRTDAGASE 9
PR D G SE
Sbjct: 101 PRPDIGISE 109




9|SequenceR|50|41|RPRVTPRTDA

>sp|KAD_METBU|ADENYLATE kinase|Methanococcoides burtonii (strain DSM 6242

Query: 2 PRVTPRTDA 10
PR TP+ DA
Sbjct: 87 PRTTPQADA 95


>sp|Y1656_METJA|UNCHARACTERIZED protein MJ1656|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RPRVTPRTD 9
RPR++ R D
Sbjct: 81 RPRISKRVD 89


>sp|MVP_METJA|HYPERPOLARIZATION-ACTIVATED voltage-gated potassium channel|Methanocaldococcus jannaschii

Query: 4 VTPRTDA 10
+TP+TDA
Sbjct: 176 ITPKTDA 182


>sp|AMTAB_PYRAB|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 2 PRVTPRT 8
PR++PRT
Sbjct: 131 PRLSPRT 137




10|SequenceR|55|46|HAVDNRPRVT

>sp|Y103_SACS2|PROTEIN SSO0103|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 AVDNRPRV 9
A+D +PRV
Sbjct: 67 AIDRKPRV 74


>sp|RL4_THEON|LARGE ribosomal subunit protein uL4|Thermococcus onnurineus (strain NA1)

Query: 1 HAVDNRPRV 9
H VDN P+V
Sbjct: 132 HIVDNVPQV 140


>sp|RL4_THESM|LARGE ribosomal subunit protein uL4|Thermococcus sibiricus (strain DSM

Query: 1 HAVDNRPRV 9
H +DN P+V
Sbjct: 132 HVIDNIPQV 140




11|SequenceR|60|51|ASLQKHAVDN

>sp|RNZ_METVS|RIBONUCLEASE Z|Methanococcus vannielii (strain ATCC 35089

Query: 1 ASLQKHAVD 9
+S+QK+AVD
Sbjct: 243 SSMQKNAVD 251


>sp|MUTS1_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 1 ASLQKHAVDN 10
ASL HAV+N
Sbjct: 563 ASLAVHAVEN 572




12|SequenceR|65|56|VYEGFASLQK

>sp|ENO3_METHJ|ENOLASE 3|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 YEGFASLQK 10
YEGFA+L +
Sbjct: 281 YEGFAALNR 289


>sp|ENO_META3|ENOLASE aeolicus (strain ATCC BAA-1280

Query: 2 YEGFASLQK 10
+EGFASL K
Sbjct: 294 FEGFASLTK 302


>sp|MCRAM_METAC|[METHYL coenzyme M reductase]-L-arginine

Query: 2 YEGFASLQ 9
Y GF SLQ
Sbjct: 56 YSGFKSLQ 63


>sp|CBIA_METBF|COBYRINATE a,c-diamide synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 VYEGFASL 8
+YEGF SL
Sbjct: 104 LYEGFESL 111


>sp|QUEE_METKA|7-CARBOXY-7-DEAZAGUANINE synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 VYEGFASLQ 9
VYE F SLQ
Sbjct: 15 VYEVFLSLQ 23


>sp|PDXS_NATPD|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Natronomonas pharaonis (strain

Query: 1 VYEGFASLQK 10
V GFA +QK
Sbjct: 16 VKRGFAKMQK 25


>sp|PDXS_HALSA|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Halobacterium salinarum

Query: 1 VYEGFASLQK 10
V GFA +QK
Sbjct: 17 VKRGFAKMQK 26


>sp|PDXS_HALS3|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Halobacterium salinarum

Query: 1 VYEGFASLQK 10
V GFA +QK
Sbjct: 17 VKRGFAKMQK 26


>sp|Y1511_METJA|UNCHARACTERIZED protein MJ1511|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YEGFASLQK 10
YE A+LQK
Sbjct: 21 YEAVANLQK 29


>sp|PDXS_HALMA|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Haloarcula marismortui (strain

Query: 1 VYEGFASLQK 10
V GFA +QK
Sbjct: 17 VKRGFAKMQK 26


>sp|ENO_HALWD|ENOLASE walsbyi (strain DSM 16790

Query: 2 YEGFASLQK 10
Y+GFA+L +
Sbjct: 283 YDGFATLTE 291




13|SequenceR|70|61|PLIEAVYEGF

>sp|NPPNK_METMP|BIFUNCTIONAL NADP phosphatase/NAD kinase|Methanococcus maripaludis (strain DSM

Query: 1 PLIEAVYEGF 10
P+IE EGF
Sbjct: 480 PIIEPTVEGF 489


>sp|DHQS_METS3|3-DEHYDROQUINATE synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 LIEAVYEG 9
LIEA YEG
Sbjct: 305 LIEAEYEG 312


>sp|COFC_METJA|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 LIEAVYEGF 10
LIE YEGF
Sbjct: 144 LIEIKYEGF 152


>sp|ENO_METVS|ENOLASE vannielii (strain ATCC 35089

Query: 1 PLIEAVYEGF 10
PL E +EGF
Sbjct: 289 PLFEGDFEGF 298


>sp|DNLI_NANEQ|DNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 LIEAVYEGF 10
+IEA Y+GF
Sbjct: 244 MIEAKYDGF 252


>sp|COFC_METSF|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus sp. (strain FS406-22)

Query: 2 LIEAVYEGF 10
LIE YEGF
Sbjct: 138 LIEIKYEGF 146


>sp|COFC_METFA|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus fervens (strain DSM 4213

Query: 2 LIEAVYEGF 10
LIE YEGF
Sbjct: 138 LIELRYEGF 146


>sp|ENO_METMP|ENOLASE maripaludis (strain DSM 14266

Query: 1 PLIEAVYEGF 10
PL E +EGF
Sbjct: 289 PLFEEDFEGF 298


>sp|IF2G_METKA|TRANSLATION initiation factor 2 subunit|Methanopyrus kandleri (strain AV19 /

Query: 2 LIEAVYEGF 10
L+EA+YE F
Sbjct: 193 LVEAMYEHF 201


>sp|IF2B_PYRNV|TRANSLATION initiation factor 2 subunit|Pyrobaculum neutrophilum (strain DSM

Query: 2 LIEAVYEGF 10
++EAVYE F
Sbjct: 86 VVEAVYERF 94


>sp|IF2B_PYRCJ|TRANSLATION initiation factor 2 subunit|Pyrobaculum calidifontis (strain DSM

Query: 2 LIEAVYEGF 10
++EAVYE F
Sbjct: 86 VVEAVYERF 94


>sp|IF2B_PYRAR|TRANSLATION initiation factor 2 subunit|Pyrobaculum arsenaticum (strain DSM

Query: 2 LIEAVYEGF 10
++EAVYE F
Sbjct: 86 VVEAVYERF 94


>sp|IF2B_PYRIL|TRANSLATION initiation factor 2 subunit|Pyrobaculum islandicum (strain DSM

Query: 2 LIEAVYEGF 10
++EAVYE F
Sbjct: 86 VVEAVYERF 94


>sp|NCPP_METJA|PROBABLE inosine/xanthosine triphosphatase|Methanocaldococcus jannaschii

Query: 3 IEAVYEGF 10
IEAV EGF
Sbjct: 19 IEAVKEGF 26


>sp|SYA_CALMQ|ALANINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 4 EAVYEGF 10
EAV+EGF
Sbjct: 257 EAVFEGF 263


>sp|Y3502_METJA|UNCHARACTERIZED protein MJECL02|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PLIEAVYE 8
P IEA+Y+
Sbjct: 52 PTIEAIYK 59


>sp|ACYP_NATPD|ACYLPHOSPHATASE pharaonis (strain ATCC 35678

Query: 3 IEAVYEG 9
+EAV+EG
Sbjct: 45 VEAVFEG 51


>sp|ACYP_HALWD|ACYLPHOSPHATASE walsbyi (strain DSM 16790

Query: 3 IEAVYEG 9
+EAV+EG
Sbjct: 46 VEAVFEG 52


>sp|ENO_METM5|ENOLASE maripaludis (strain C5 /

Query: 1 PLIEAVYEGF 10
PL E +EGF
Sbjct: 289 PLFEEDFEGF 298


>sp|ENO_METM7|ENOLASE maripaludis (strain C7 /

Query: 1 PLIEAVYEGF 10
PL E +EGF
Sbjct: 289 PLFEEDFEGF 298


>sp|GLNA_ARCFU|GLUTAMINE synthetase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PLIEAVYE 8
PL+E VYE
Sbjct: 415 PLLEDVYE 422


>sp|Y380_METJA|UNCHARACTERIZED protein MJ0380|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LIEAVYEGF 10
L+EA+Y+G
Sbjct: 48 LLEALYKGL 56


>sp|DHQS_METTH|3-DEHYDROQUINATE synthase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 LIEAVYEGF 10
L+EA YEG
Sbjct: 311 LVEAEYEGM 319


>sp|ENDA_METBU|TRNA-SPLICING endonuclease|Methanococcoides burtonii (strain DSM 6242

Query: 2 LIEAVYEGF 10
LIEAVY F
Sbjct: 38 LIEAVYLAF 46


>sp|TREH_THEAC|TREHALASE acidophilum (strain ATCC 25905

Query: 1 PLIEAVYEGF 10
PLI+ V GF
Sbjct: 117 PLIQRVQHGF 126


>sp|THRC_METAC|THREONINE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 IEAVYEGF 10
I A+Y+GF
Sbjct: 236 ITAIYKGF 243


>sp|DPOL_THELI|DNA polymerase|Thermococcus litoralis

Query: 2 LIEAVYEGF 10
L+E YEGF
Sbjct: 1505 LLELEYEGF 1513


>sp|Y1090_ARCFU|PUTATIVE antitoxin AF_1090|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 LIEAVYEG 9
+IEAVYE
Sbjct: 4 IIEAVYEN 11


>sp|Y1087_ARCFU|PUTATIVE antitoxin AF_1087|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 LIEAVYEG 9
+IEAVYE
Sbjct: 4 IIEAVYEN 11


>sp|IORA_ARCFU|INDOLEPYRUVATE oxidoreductase subunit IorA|Archaeoglobus fulgidus (strain ATCC

Query: 1 PLIEAVYE 8
PLI AVY
Sbjct: 459 PLINAVYN 466


>sp|DAPAT_METTH|LL-DIAMINOPIMELATE aminotransferase|Methanothermobacter thermautotrophicus (strain

Query: 1 PLIEAVYEGF 10
PL EAV E F
Sbjct: 47 PLPEAVVEAF 56


>sp|ACYP_HALMA|ACYLPHOSPHATASE marismortui (strain ATCC 43049

Query: 3 IEAVYEG 9
+EAV+EG
Sbjct: 44 VEAVFEG 50


>sp|VPB21_ARCFU|PUTATIVE antitoxin VapB21|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 LIEAVYEG 9
+IEAVYE
Sbjct: 4 IIEAVYEN 11


>sp|Y806_METJA|UNCHARACTERIZED peptidase MJ0806|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 IEAVYEGF 10
I AVYEG+
Sbjct: 208 IGAVYEGY 215


>sp|Y1079_ARCFU|PUTATIVE antitoxin AF_1079|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 LIEAVYEG 9
+IEAVYE
Sbjct: 4 IIEAVYEN 11


>sp|IF2B_PYRAE|TRANSLATION initiation factor 2 subunit|Pyrobaculum aerophilum (strain ATCC

Query: 2 LIEAVYEGF 10
++EAVY+ F
Sbjct: 86 VVEAVYDRF 94


>sp|DPOL_THEG8|DNA polymerase|Thermococcus sp. (strain GE8)

Query: 2 LIEAVYEGF 10
L+E YEGF
Sbjct: 1498 LLELEYEGF 1506




14|SequenceR|75|66|QQVYKPLIEA

>sp|PURQ_SACS2|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Saccharolobus solfataricus (strain ATCC

Query: 3 VYKPLIEA 10
VYK LIEA
Sbjct: 16 VYKALIEA 23


>sp|Y1472_METJA|UNCHARACTERIZED protein MJ1472|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 YKPLIE 9
YKPLIE
Sbjct: 537 YKPLIE 542


>sp|SYH_SULAC|HISTIDINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 QQVYKPLIE 9
Q+VY P++E
Sbjct: 38 QEVYTPIVE 46


>sp|Y2048_ARCFU|UNCHARACTERIZED protein AF_2048|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 YKPLIE 9
YKPL+E
Sbjct: 165 YKPLVE 170




15|SequenceR|80|71|CSVQVQQVYK

>sp|MCH_METJA|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CSVQVQQVY 9
C V+V+ VY
Sbjct: 159 CGVEVENVY 167


>sp|MCH_METS3|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 CSVQVQQVY 9
C+V V+ VY
Sbjct: 160 CNVDVKDVY 168




16|SequenceR|85|76|ELENFCSVQV

>sp|BAX1_ARCFU|ENDONUCLEASE Bax1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ELENFCSV 8
ELENF V
Sbjct: 391 ELENFAEV 398


>sp|PCKG_THEKO|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 LENFCSVQV 10
LEN C V+V
Sbjct: 402 LENPCGVEV 410


>sp|PCKG_PYRFU|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LENFCSVQV 10
LEN C V+V
Sbjct: 404 LENPCGVEV 412


>sp|PCKG_PYRAB|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Pyrococcus abyssi (strain GE5 /

Query: 2 LENFCSVQV 10
LEN C V+V
Sbjct: 399 LENPCGVEV 407


>sp|COFH_METHJ|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanospirillum hungatei JF-1 (strain

Query: 2 LENFCSVQV 10
L+NF ++QV
Sbjct: 289 LDNFTNIQV 297


>sp|MPTA_METB6|GTP cyclohydrolase MptA|Methanoregula boonei (strain DSM 21154

Query: 1 ELENFCS 7
E+EN CS
Sbjct: 91 EIENLCS 97


>sp|GUAAA_METJA|GMP synthase [glutamine-hydrolyzing] subunit A|Methanocaldococcus

Query: 2 LENFCSV 8
L+NFC V
Sbjct: 176 LKNFCKV 182


>sp|HEM1_SACS2|GLUTAMYL-TRNA reductase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 LENFCSV 8
L+N+CS+
Sbjct: 8 LQNYCSI 14




17|SequenceR|90|81|PHICVELENF

>sp|SYL_ARCFU|LEUCINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PHICVEL 7
PHIC EL
Sbjct: 768 PHICEEL 774


>sp|SYL_PYRFU|LEUCINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PHICVEL 7
PHIC EL
Sbjct: 799 PHICEEL 805


>sp|SYL_PYRAB|LEUCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 PHICVEL 7
PHIC EL
Sbjct: 799 PHICEEL 805


>sp|SYL_PYRHO|LEUCINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PHICVEL 7
PHIC EL
Sbjct: 799 PHICEEL 805


>sp|RSMA_SACS2|PROBABLE ribosomal RNA small subunit|Saccharolobus solfataricus (strain

Query: 1 PHICVELEN 9
P IC+EL++
Sbjct: 24 PDICIELDD 32


>sp|SYL_METTP|LEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 PHICVEL 7
PHIC E+
Sbjct: 772 PHICEEI 778


>sp|SYL_METBU|LEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PHICVEL 7
PHIC E+
Sbjct: 775 PHICEEI 781


>sp|Y243_ARCFU|UNCHARACTERIZED protein AF_0243|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PHICVELENF 10
PHI E+E +
Sbjct: 159 PHIICEIETY 168


>sp|RKD4_PYRCJ|ARCADIN-4 calidifontis (strain DSM 21063

Query: 5 VELENF 10
VELENF
Sbjct: 7 VELENF 12


>sp|BAX1_ARCFU|ENDONUCLEASE Bax1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 VELENF 10
VELENF
Sbjct: 390 VELENF 395


>sp|SYL_METBF|LEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 PHICVEL 7
PH+C E+
Sbjct: 776 PHLCEEI 782


>sp|SYL_METAC|LEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PHICVEL 7
PH+C E+
Sbjct: 776 PHLCEEI 782


>sp|SYL_METMA|LEUCINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PHICVEL 7
PH+C E+
Sbjct: 776 PHLCEEV 782


>sp|FDHD_PICTO|SULFUR carrier protein FdhD|Picrophilus torridus (strain ATCC 700027

Query: 2 HICVELENF 10
++CV +E+F
Sbjct: 81 NVCVSVESF 89


>sp|AGLB2_ARCFU|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 CVELENF 10
C+ L+NF
Sbjct: 23 CIRLQNF 29


>sp|SYL_METMP|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 PHICVEL 7
PH+C E+
Sbjct: 789 PHLCEEI 795


>sp|SYL_METJA|LEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PHICVEL 7
PH+C E+
Sbjct: 776 PHLCEEM 782


>sp|SYL_METM7|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 PHICVEL 7
PH+C E+
Sbjct: 789 PHLCEEI 795


>sp|SYL_METM5|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 1 PHICVEL 7
PH+C E+
Sbjct: 789 PHLCEEI 795


>sp|SYL_META3|LEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 PHICVEL 7
PH+C E+
Sbjct: 800 PHLCEEI 806


>sp|ASORS_PYRFU|ALIPHATIC sulfonate oxidoreductase, polyferredoxin-like subunit|Pyrococcus

Query: 1 PHICVELENF 10
PH CV+ ++
Sbjct: 55 PHTCVQCPDY 64


>sp|BIOD_META3|ATP-DEPENDENT dethiobiotin synthetase BioD|Methanococcus aeolicus (strain ATCC

Query: 1 PHICVELEN 9
P+I E+EN
Sbjct: 73 PNIAAEIEN 81




18|SequenceR|95|86|PIVGDPHICV

>sp|IF6_METHJ|TRANSLATION initiation factor 6|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 IVGDPHICV 10
I GDPHI V
Sbjct: 7 IAGDPHIGV 15


>sp|SYI_METTH|ISOLEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 PIVGDPHICV 10
P+ GD HI V
Sbjct: 211 PVSGDTHILV 220


>sp|SELD_METJA|SELENIDE, water dikinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PIVGDPHI 8
PIV DP+I
Sbjct: 73 PIVDDPYI 80


>sp|RPO11_METTH|DNA-DIRECTED RNA polymerase subunit Rpo11|Methanothermobacter

Query: 1 PIVGDPHICV 10
PIVG+P + +
Sbjct: 46 PIVGEPQLYI 55


>sp|FTHS_THEVO|FORMATE--TETRAHYDROFOLATE ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 IVGDPHICV 10
I+ DP++C+
Sbjct: 458 IMNDPYVCM 466


>sp|SYE_STAMF|GLUTAMATE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 1 PIVGDPHI 8
PIVGD +I
Sbjct: 259 PIVGDKYI 266


>sp|SYW1_HALSA|TRYPTOPHAN--TRNA ligase 1|Halobacterium salinarum (strain ATCC 700922

Query: 4 GDPHI 8
GDPHI
Sbjct: 88 GDPHI 92


>sp|MTRA_METV3|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanococcus voltae (strain ATCC

Query: 2 IVGDPHICV 10
+VG+P CV
Sbjct: 19 VVGNPESCV 27


>sp|MCH_METBU|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PIVGDPHICV 10
PIVGD C+
Sbjct: 213 PIVGDDTKCM 222


>sp|RGYR1_AERPE|REVERSE gyrase 1|Aeropyrum pernix (strain ATCC 700893

Query: 3 VGDPH 7
+GDPH
Sbjct: 454 IGDPH 458


>sp|SYE_PYRCJ|GLUTAMATE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 PIVGDPHI 8
P+VGD +I
Sbjct: 277 PLVGDKYI 284


>sp|SELD_METMP|SELENIDE, water dikinase|Methanococcus maripaludis (strain DSM 14266

Query: 1 PIVGDPHI 8
PIV DP++
Sbjct: 59 PIVDDPYL 66


>sp|SYE_PYRIL|GLUTAMATE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 PIVGDPHI 8
P+VGD +I
Sbjct: 277 PLVGDKYI 284


>sp|FDHA_METJA|F420-DEPENDENT formate dehydrogenase subunit alpha|Methanocaldococcus jannaschii

Query: 1 PIVGDPHI 8
PIV DP +
Sbjct: 392 PIVSDPDV 399


>sp|MTRA_META3|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanococcus aeolicus (strain ATCC

Query: 2 IVGDPHICV 10
+VG+P CV
Sbjct: 19 VVGNPESCV 27


>sp|MTRA_METMP|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanococcus maripaludis (strain

Query: 2 IVGDPHICV 10
+VG+P CV
Sbjct: 19 VVGNPESCV 27


>sp|MTRA_METFA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanocaldococcus fervens (strain

Query: 2 IVGDPHICV 10
+VG+P CV
Sbjct: 19 VVGNPESCV 27


>sp|RPO11_ARCFU|DNA-DIRECTED RNA polymerase subunit Rpo11|Archaeoglobus fulgidus (strain ATCC

Query: 1 PIVGDPHICV 10
P++G+P I +
Sbjct: 48 PLIGEPEIYI 57


>sp|SYDND_METHJ|ASPARTATE--TRNA(ASP/ASN) ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 PIVGDPHIC 9
P DP IC
Sbjct: 334 PYENDPEIC 342


>sp|MTRA_METJA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanocaldococcus jannaschii

Query: 2 IVGDPHICV 10
+VG+P CV
Sbjct: 19 VVGNPESCV 27




19|SequenceR|100|91|LFTLVPIVGD

>sp|PPSA_STAMF|PROBABLE phosphoenolpyruvate synthase|Staphylothermus marinus (strain ATCC

Query: 1 LFTLVPIVGD 10
+FTL P+ GD
Sbjct: 205 MFTLHPVTGD 214


>sp|GATD_METTH|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanothermobacter thermautotrophicus

Query: 3 TLVPIVGD 10
TL+P++G+
Sbjct: 342 TLIPVIGE 349


>sp|FLPA_METVS|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus vannielii (strain

Query: 4 LVPIVGD 10
L+PI+GD
Sbjct: 124 LIPILGD 130


>sp|FLPA_META3|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus aeolicus (strain

Query: 4 LVPIVGD 10
L+PI+GD
Sbjct: 125 LIPILGD 131


>sp|Y1211_METTH|PUTATIVE transport protein MTH_1211|Methanothermobacter thermautotrophicus

Query: 1 LFTLVPIVG 9
LF L+P++G
Sbjct: 229 LFQLIPVIG 237


>sp|ILVB_METAO|PROBABLE acetolactate synthase large subunit|Methanococcus aeolicus

Query: 5 VPIVGD 10
VPIVGD
Sbjct: 315 VPIVGD 320


>sp|YPV4_METTF|UNCHARACTERIZED protein ORF4|Methanothermobacter thermautotrophicus

Query: 1 LFTLVPIV 8
+FTL+P V
Sbjct: 56 VFTLIPFV 63


>sp|FLPA_METMP|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 4 LVPIVGD 10
L+P++GD
Sbjct: 124 LIPVLGD 130


>sp|FLPA_METM7|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 4 LVPIVGD 10
L+P++GD
Sbjct: 124 LIPVLGD 130


>sp|FLPA_METM6|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 4 LVPIVGD 10
L+P++GD
Sbjct: 124 LIPVLGD 130


>sp|FLPA_METM5|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 4 LVPIVGD 10
L+P++GD
Sbjct: 124 LIPVLGD 130


>sp|FLPA_THESM|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Thermococcus sibiricus (strain DSM

Query: 4 LVPIVGD 10
+VPI+GD
Sbjct: 123 IVPILGD 129


>sp|YPZ4_METTF|UNCHARACTERIZED protein ORF4'|Methanothermobacter thermautotrophicus

Query: 1 LFTLVPIV 8
+FTL+P V
Sbjct: 56 VFTLIPFV 63


>sp|FLPA_PYRHO|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Pyrococcus horikoshii (strain ATCC

Query: 4 LVPIVGD 10
+VPI+GD
Sbjct: 124 IVPILGD 130


>sp|FLPA_PYRAB|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 4 LVPIVGD 10
+VPI+GD
Sbjct: 124 IVPILGD 130


>sp|FLPA_THEON|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Thermococcus onnurineus (strain

Query: 4 LVPIVGD 10
+VPI+GD
Sbjct: 123 IVPILGD 129


>sp|FLPA_THEGJ|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Thermococcus gammatolerans (strain

Query: 4 LVPIVGD 10
+VPI+GD
Sbjct: 123 IVPILGD 129


>sp|FLPA_THEKO|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Thermococcus kodakarensis (strain

Query: 4 LVPIVGD 10
+VPI+GD
Sbjct: 123 IVPILGD 129


>sp|YA00_PYRHO|PUTATIVE transport protein PH1000|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 FTLVPIVGD 10
+TL P++G
Sbjct: 104 YTLTPVIGQ 112




20|SequenceR|105|96|NTHDRLFTLV

>sp|DNLJ_HALLT|DNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 THDRLFT 8
T+DRLFT
Sbjct: 65 TYDRLFT 71




21|SequenceR|110|101|SKFQANTHDR

>sp|NADE_METB6|NH(3)-DEPENDENT NAD(+) synthetase|Methanoregula boonei (strain DSM 21154

Query: 1 SKFQANTHDR 10
S+ QAN H R
Sbjct: 229 SRAQANAHKR 238


>sp|Y1386_ARCFU|UNCHARACTERIZED protein AF_1386|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 FQANTHDR 10
Q N HDR
Sbjct: 54 LQVNVHDR 61


>sp|SYV_PICTO|VALINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 KFQANTHDR 10
K NTH+R
Sbjct: 320 KHSVNTHER 328


>sp|TRUA_METBF|TRNA pseudouridine synthase A|Methanosarcina barkeri (strain Fusaro /

Query: 1 SKFQANTHD 9
SKF THD
Sbjct: 129 SKFLLGTHD 137


>sp|GYRA_HALL2|DNA gyrase subunit A|Haloferax lucentense (strain DSM 14919

Query: 1 SKFQANTHD 9
S F NTHD
Sbjct: 564 SVFVTNTHD 572


>sp|ARCH_SULTO|PROTEIN archease|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 KFQANTHDR 10
KF N H+R
Sbjct: 102 KFDPNKHER 110




22|SequenceR|115|106|TLDVLSKFQA

>sp|SYTC_METS5|THREONINE--TRNA ligase catalytic subunit|Metallosphaera sedula (strain ATCC 51363

Query: 1 TLDVLSKF 8
TLDVL KF
Sbjct: 297 TLDVLGKF 304


>sp|AROA_METJA|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanocaldococcus jannaschii (strain

Query: 1 TLDVLSKF 8
TLD+L+KF
Sbjct: 203 TLDILNKF 210


>sp|AROA_METVS|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanococcus vannielii (strain ATCC

Query: 1 TLDVLSKF 8
T+DVL KF
Sbjct: 199 TIDVLDKF 206


>sp|RS24_METS5|SMALL ribosomal subunit protein eS24|Metallosphaera sedula (strain ATCC

Query: 3 DVLSKFQ 9
DVLSKF+
Sbjct: 88 DVLSKFE 94


>sp|AROA_METM6|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanococcus maripaludis (strain C6 /

Query: 1 TLDVLSKF 8
T+DVL KF
Sbjct: 199 TIDVLDKF 206


>sp|AROA_META3|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanococcus aeolicus (strain ATCC

Query: 1 TLDVLSKF 8
T+DVL KF
Sbjct: 202 TIDVLDKF 209


>sp|AROA_METM5|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanococcus maripaludis (strain C5 /

Query: 1 TLDVLSKF 8
T+DVL KF
Sbjct: 199 TIDVLDKF 206


>sp|AROA_METMP|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanococcus maripaludis (strain DSM

Query: 1 TLDVLSKF 8
T+DVL KF
Sbjct: 199 TIDVLDKF 206


>sp|AROA_METM7|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanococcus maripaludis (strain C7 /

Query: 1 TLDVLSKF 8
T+DVL KF
Sbjct: 199 TIDVLDKF 206


>sp|G1PDH_IGNH4|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 DVLSKFQA 10
DVL+KF A
Sbjct: 171 DVLAKFSA 178


>sp|AROA_PYRAB|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 1 TLDVLSKFQA 10
+LD +SKF A
Sbjct: 58 SLDAISKFGA 67


>sp|HELS_SULAC|ATP-DEPENDENT DNA helicase Hel308|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 TLDVLSK 7
TLD+LSK
Sbjct: 241 TLDILSK 247




23|SequenceR|120|111|PVDVATLDVL

>sp|RL4_METBF|LARGE ribosomal subunit protein uL4|Methanosarcina barkeri (strain Fusaro

Query: 2 VDVATLDVL 10
VDVAT+D L
Sbjct: 215 VDVATVDSL 223


>sp|PSA2_HALMA|PROTEASOME subunit alpha 2|Haloarcula marismortui (strain ATCC 43049

Query: 2 VDVATLDV 9
VD+AT+DV
Sbjct: 211 VDIATIDV 218


>sp|SAT_ARCFU|SULFATE adenylyltransferase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PVDVAT 6
PVDVAT
Sbjct: 136 PVDVAT 141


>sp|NUCS_PYRAE|ENDONUCLEASE NucS|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PVDVATLDVL 10
P DV LD+L
Sbjct: 157 PTDVGHLDIL 166


>sp|PGK_METMP|PHOSPHOGLYCERATE kinase|Methanococcus maripaludis (strain DSM 14266

Query: 1 PVDVATLDVL 10
P+DV T D+L
Sbjct: 24 PIDVNTGDIL 33


>sp|HEM11_PYRCJ|GLUTAMYL-TRNA reductase 1|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 PVDVATLDVL 10
PV+V TLD L
Sbjct: 264 PVEVVTLDHL 273


>sp|SYK1_METMA|LYSINE--TRNA ligase 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PVDVATLDVL 10
PV VATL L
Sbjct: 426 PVQVATLSEL 435


>sp|DPHB_PYRIL|DIPHTHINE synthase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 PVDVATL 7
P+DVATL
Sbjct: 36 PLDVATL 42


>sp|MES_EURX9|METALLOPTERIN-DEPENDENT ergothioneine synthase|Euryarchaeota archaeon (strain ADurb.Bin009)

Query: 1 PVDVATLDV 9
PVD LDV
Sbjct: 929 PVDAVDLDV 937


>sp|RL30_THEVO|LARGE ribosomal subunit protein uL30|Thermoplasma volcanium (strain

Query: 2 VDVATLDVL 10
+DV TL+VL
Sbjct: 57 IDVDTLEVL 65


>sp|HEM11_PYRAR|GLUTAMYL-TRNA reductase 1|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 PVDVATLDVL 10
PV+V T+D L
Sbjct: 267 PVEVVTIDSL 276


>sp|ARGJ_METM5|GLUTAMATE N-acetyltransferase|Methanococcus maripaludis (strain C5 /

Query: 1 PVDVATLDV 9
P+D+ TL+V
Sbjct: 120 PMDIITLEV 128


>sp|HELS_SULTO|ATP-DEPENDENT DNA helicase Hel308|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 PVDVATLDVL 10
P+D+ +D+L
Sbjct: 10 PLDIKIIDIL 19


>sp|SECD_METTH|PROTEIN-EXPORT membrane protein SecD|Methanothermobacter thermautotrophicus

Query: 1 PVDVATLD 8
PVD AT++
Sbjct: 52 PVDAATMN 59




24|SequenceR|125|116|RNQRTPVDVA

>sp|BACH_HALSS|HALORHODOPSIN sp. (strain SG1)

Query: 2 NQRTPVDVA 10
N+RT DVA
Sbjct: 260 NERTVADVA 268


>sp|PUS10_THEPD|TRNA pseudouridine synthase Pus10|Thermofilum pendens (strain DSM 2475

Query: 2 NQRTPVDV 9
NQRTP V
Sbjct: 361 NQRTPTRV 368


>sp|METK_METMI|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (Methanococcus deltae)

Query: 1 RNQRTPVD 8
R +RTP+D
Sbjct: 8 RLERTPID 15


>sp|METK_METMP|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 RNQRTPVD 8
R +RTP+D
Sbjct: 8 RLERTPID 15


>sp|PGK_METFV|PHOSPHOGLYCERATE kinase|Methanothermus fervidus (strain ATCC 43054

Query: 5 TPVDVA 10
TPVDVA
Sbjct: 276 TPVDVA 281


>sp|METK_METM7|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain C7 /

Query: 1 RNQRTPVD 8
R +RTP+D
Sbjct: 8 RLERTPID 15


>sp|METK_METM5|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain C5 /

Query: 1 RNQRTPVD 8
R +RTP+D
Sbjct: 8 RLERTPID 15


>sp|METK_METM6|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain C6 /

Query: 1 RNQRTPVD 8
R +RTP+D
Sbjct: 8 RLERTPID 15




25|SequenceR|130|121|YVIEFRNQRT

>sp|Y1613_METJA|UNCHARACTERIZED protein MJ1613|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VIEFRNQR 9
+IEF+N+R
Sbjct: 33 IIEFKNKR 40


>sp|Y399_ARCFU|UNCHARACTERIZED protein AF_0399|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 VIEFRNQR 9
V+EFRN++
Sbjct: 193 VVEFRNEQ 200




26|SequenceR|135|126|LSLLNYVIEF

>sp|SYS_PICTO|SERINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 1 LSLLNYVIEF 10
L+L+NY ++F
Sbjct: 194 LALINYAVDF 203


>sp|Y416_METJA|DOUBLE zinc ribbon protein MJ0416|Methanocaldococcus jannaschii (strain

Query: 1 LSLLNYVIEF 10
++LLN +IE+
Sbjct: 60 ITLLNQIIEY 69


>sp|TYW3_ARCFU|TRNA(PHE) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-

Query: 1 LSLLNYVIE 9
+SL NYV+E
Sbjct: 127 ISLSNYVVE 135


>sp|VOLA_HALVD|VOLACTIN volcanii (strain ATCC 29605

Query: 2 SLLNYVIE 9
+LL+YVIE
Sbjct: 245 NLLDYVIE 252


>sp|APT_METM7|ADENINE phosphoribosyltransferase|Methanococcus maripaludis (strain C7 /

Query: 1 LSLLNYVIEF 10
+S LN+VIE
Sbjct: 141 VSALNFVIEL 150


>sp|APT_METM5|ADENINE phosphoribosyltransferase|Methanococcus maripaludis (strain C5 /

Query: 1 LSLLNYVIEF 10
+S LN+VIE
Sbjct: 141 VSALNFVIEL 150


>sp|APT_METMP|ADENINE phosphoribosyltransferase|Methanococcus maripaludis (strain DSM

Query: 1 LSLLNYVIEF 10
+S LN+VIE
Sbjct: 141 VSALNFVIEL 150


>sp|SYS_SULTO|SERINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LSLLNYVIE 9
++LLNY I+
Sbjct: 197 IALLNYAID 205




27|SequenceR|140|131|RSNFRLSLLN

>sp|ASNH2_METJA|PUTATIVE asparagine synthetase [glutamine-hydrolyzing] 2|Methanocaldococcus

Query: 1 RSNFRLSLLN 10
+ FRLSL+N
Sbjct: 431 KEAFRLSLIN 440




28|SequenceR|145|136|TKVRIRSNFR

>sp|DCDA_METTH|DIAMINOPIMELATE decarboxylase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 KVRIRSNFR 10
++RIR N+R
Sbjct: 36 EMRIRENYR 44




29|SequenceR|150|141|LEDTYTKVRI

>sp|IDI2_METMP|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Methanococcus maripaludis (strain DSM 14266

Query: 1 LEDTYTKVR 9
LEDTY+ VR
Sbjct: 107 LEDTYSVVR 115


>sp|SYI_METTP|ISOLEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 EDTYTKVR 9
EDTY KVR
Sbjct: 25 EDTYHKVR 32


>sp|PYRD_HALSA|DIHYDROOROTATE dehydrogenase (quinone)|Halobacterium salinarum (strain ATCC 700922

Query: 2 EDTYTKVR 9
ED Y K+R
Sbjct: 295 EDAYEKIR 302


>sp|PYRD_HALS3|DIHYDROOROTATE dehydrogenase (quinone)|Halobacterium salinarum (strain ATCC 29341

Query: 2 EDTYTKVR 9
ED Y K+R
Sbjct: 295 EDAYEKIR 302


>sp|PYRC_METST|DIHYDROOROTASE stadtmanae (strain ATCC 43021

Query: 1 LEDTYTKVR 9
+E+TYTK +
Sbjct: 383 IENTYTKAK 391


>sp|RAD50_METMA|DNA double-strand break repair Rad50|Methanosarcina mazei (strain ATCC

Query: 1 LEDTYTKVR 9
LE+TY +VR
Sbjct: 908 LENTYMRVR 916


>sp|SYL_PYRAR|LEUCINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 LEDTYTKVRI 10
+ D Y KVR+
Sbjct: 726 VRDAYEKVRV 735


>sp|RAD50_METAC|DNA double-strand break repair Rad50|Methanosarcina acetivorans (strain

Query: 1 LEDTYTKVR 9
LE+TY +VR
Sbjct: 912 LENTYIRVR 920


>sp|IF1A1_METAC|TRANSLATION initiation factor 1A 1|Methanosarcina acetivorans (strain ATCC

Query: 2 EDTYTKVR 9
E+T+T+VR
Sbjct: 18 EETFTRVR 25


>sp|Y1487_METJA|UNCHARACTERIZED methyltransferase MJ1487|Methanocaldococcus jannaschii (strain ATCC

Query: 1 LEDTYTKVRI 10
+ED Y VR+
Sbjct: 315 VEDVYNAVRV 324


>sp|LHRC_SACS2|ATP-DEPENDENT helicase Lhr-Core|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LEDTYTKVRI 10
L++ Y K+RI
Sbjct: 473 LKNVYAKIRI 482




30|SequenceR|155|146|SEIPTLEDTY

>sp|HELS_PYRHO|ATP-DEPENDENT DNA helicase Hel308|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 SEIPTLEDTY 10
E+P LED Y
Sbjct: 533 KELPMLEDEY 542


>sp|SYA_METMP|ALANINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 SEIPTLEDT 9
SEI +LEDT
Sbjct: 739 SEIASLEDT 747


>sp|RPA_METJA|REPLICATION factor A|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SEIPTLEDTY 10
E+P ++DTY
Sbjct: 166 GELPEIKDTY 175


>sp|SYA_METM7|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 SEIPTLEDT 9
SEI LEDT
Sbjct: 739 SEIAVLEDT 747


>sp|RS3_IGNH4|SMALL ribosomal subunit protein uS3|Ignicoccus hospitalis (strain KIN4/I

Query: 2 EIPTLEDT 9
E PTLE+T
Sbjct: 225 EAPTLEET 232


>sp|Y1180_METJA|UNCHARACTERIZED protein MJ1180|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SEIPTLEDTY 10
SE+PTL Y
Sbjct: 27 SEVPTLTVAY 36


>sp|AATD_THEAC|A-TYPE ATP synthase subunit D|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 IPTLEDTY 10
IPTLE +Y
Sbjct: 105 IPTLEVSY 112


>sp|PTH_METBF|PEPTIDYL-TRNA hydrolase|Methanosarcina barkeri (strain Fusaro /

Query: 2 EIPTLEDTY 10
++PTL D Y
Sbjct: 55 KVPTLNDLY 63


>sp|Y3502_METJA|UNCHARACTERIZED protein MJECL02|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EIPTLEDTY 10
E+PT+E Y
Sbjct: 50 ELPTIEAIY 58


>sp|APGM_METS3|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanobrevibacter smithii (strain ATCC

Query: 1 SEIPTLEDTY 10
SE+ LED Y
Sbjct: 331 SELKKLEDVY 340




31|SequenceR|160|151|FVSVASEIPT

>sp|Y865_METJA|PUTATIVE methylthiotransferase MJ0865|Methanocaldococcus jannaschii (strain

Query: 1 FVSVASEIPT 10
FVS+A IPT
Sbjct: 350 FVSIAEPIPT 359


>sp|Y300_METJA|UNCHARACTERIZED HTH-type transcriptional regulator MJ0300|Methanocaldococcus

Query: 2 VSVASEIP 9
VSV SEIP
Sbjct: 241 VSVVSEIP 248


>sp|GLMS_PYRAE|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Pyrobaculum aerophilum (strain ATCC

Query: 1 FVSVASEIPT 10
F VAS+IPT
Sbjct: 191 FNIVASDIPT 200




32|SequenceR|165|156|WNAAKFVSVA

>sp|SYV_METTH|VALINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 WNAAKFVSV 9
WNA +F+S+
Sbjct: 583 WNAFRFISI 591


>sp|SYV_AERPE|VALINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 WNAAKFVS 8
WN A+FVS
Sbjct: 599 WNLARFVS 606


>sp|ACDA_METSH|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanothrix

Query: 1 WNAAKFVS 8
W A KF+S
Sbjct: 763 WKAKKFIS 770


>sp|SYV_METMP|VALINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 WNAAKFVSV 9
WNA KF +
Sbjct: 582 WNACKFAKM 590


>sp|TOP6A_METBF|TYPE 2 DNA topoisomerase 6|Methanosarcina barkeri (strain Fusaro /

Query: 1 WNAAKF 6
W AAKF
Sbjct: 111 WEAAKF 116


>sp|TOP6A_ARCFU|TYPE 2 DNA topoisomerase 6|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 WNAAKF 6
W AAKF
Sbjct: 102 WGAAKF 107


>sp|AGLB1_PYRFU|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase 1|Pyrococcus furiosus (strain ATCC 43587

Query: 1 WNAAKFVSVA 10
W AA+F+ +A
Sbjct: 414 WTAARFLFLA 423


>sp|SYV_NATPD|VALINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 WNAAKFVS 8
WN KF S
Sbjct: 579 WNITKFAS 586




33|SequenceR|170|161|IEREYWNAAK

>sp|MV3K_THEAC|MEVALONATE 3-kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 IEREYWNA 8
I ++YWNA
Sbjct: 264 IRKDYWNA 271


>sp|SAHH_PYRAE|ADENOSYLHOMOCYSTEINASE aerophilum (strain ATCC 51768

Query: 2 EREYWNA 8
EREY+NA
Sbjct: 104 EREYYNA 110


>sp|Y329_METJA|UNCHARACTERIZED protein MJ0329|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EREYWNAAK 10
ER++WN K
Sbjct: 95 ERKHWNPQK 103


>sp|Y726_METJA|UNCHARACTERIZED protein MJ0726|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 IEREYWNAAK 10
IE++Y+N K
Sbjct: 14 IEKKYYNQLK 23


>sp|PHR_METTH|DEOXYRIBODIPYRIMIDINE photo-lyase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 5 YWNAAK 10
YWNAA+
Sbjct: 338 YWNAAQ 343


>sp|MIG_PYRAE|THYMINE/URACIL-DNA glycosylase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 EREYWNAAK 10
+RE WN A+
Sbjct: 171 DRELWNFAR 179


>sp|PHR_METTM|DEOXYRIBODIPYRIMIDINE photo-lyase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 5 YWNAAK 10
YWNAA+
Sbjct: 338 YWNAAQ 343


>sp|SYM_SULTO|METHIONINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 IEREYWNAA 9
IERE W+ A
Sbjct: 515 IEREKWDLA 523


>sp|Y830_PYRAE|PROTEIN PAE0830|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 IEREYWNA 8
IERE W +
Sbjct: 179 IERELWKS 186


>sp|LONB_PYRAB|ARCHAEAL Lon protease|Pyrococcus abyssi (strain GE5 /

Query: 1 IEREYWNA 8
+E++YW A
Sbjct: 302 LEKDYWFA 309


>sp|PELO_SULTO|PROTEIN pelota homolog|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 IEREYWN 7
IE+++WN
Sbjct: 105 IEKDHWN 111


>sp|AATE_SACS2|A-TYPE ATP synthase subunit E|Saccharolobus solfataricus (strain ATCC

Query: 1 IEREYW 6
+E+EYW
Sbjct: 76 VEKEYW 81


>sp|AATE_SACI7|A-TYPE ATP synthase subunit E|Saccharolobus islandicus (strain Y.G.57.14

Query: 1 IEREYW 6
+E+EYW
Sbjct: 76 VEKEYW 81


>sp|AATE_SACI6|A-TYPE ATP synthase subunit E|Saccharolobus islandicus (strain M.16.4 /

Query: 1 IEREYW 6
+E+EYW
Sbjct: 76 VEKEYW 81


>sp|AATE_SACI4|A-TYPE ATP synthase subunit E|Saccharolobus islandicus (strain M.14.25 /

Query: 1 IEREYW 6
+E+EYW
Sbjct: 76 VEKEYW 81


>sp|AATE_SACI3|A-TYPE ATP synthase subunit E|Saccharolobus islandicus (strain M.16.27)

Query: 1 IEREYW 6
+E+EYW
Sbjct: 76 VEKEYW 81


>sp|AATE_SACI2|A-TYPE ATP synthase subunit E|Saccharolobus islandicus (strain L.S.2.15

Query: 1 IEREYW 6
+E+EYW
Sbjct: 76 VEKEYW 81


>sp|AATE_SACI1|A-TYPE ATP synthase subunit E|Saccharolobus islandicus (strain Y.N.15.51

Query: 1 IEREYW 6
+E+EYW
Sbjct: 76 VEKEYW 81


>sp|SYM_METTH|METHIONINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 REYWNAA 9
REYW++
Sbjct: 275 REYWDSG 281




34|SequenceR|175|166|GFMDWIEREY

>sp|HIS8_METAR|HISTIDINOL-PHOSPHATE aminotransferase|Methanocella arvoryzae (strain DSM 22066

Query: 1 GFM-DWIEREY 10
GFM DWI REY
Sbjct: 233 GFMPDWIFREY 243


>sp|ARGD_ARCFU|ACETYLORNITHINE aminotransferase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 MDWIERE 9
MDWIERE
Sbjct: 1 MDWIERE 7


>sp|TOP6B_METJA|TYPE 2 DNA topoisomerase 6|Methanocaldococcus jannaschii (strain ATCC

Query: 2 FMDWIEREY 10
FM+W E+ Y
Sbjct: 374 FMEWAEKNY 382


>sp|Y1383_THEVO|MEMO1 family protein TV1383|Thermoplasma volcanium (strain ATCC 51530

Query: 1 GFMDWIERE 9
GF D IERE
Sbjct: 207 GFYDTIERE 215


>sp|GCK_SULTO|GLYCERATE 2-kinase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 GFMDWIER 8
GF+ W++R
Sbjct: 318 GFLKWVKR 325


>sp|SYM_METHJ|METHIONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 GFMDWIEREY 10
GF DW+ REY
Sbjct: 195 GFQDWL-REY 203


>sp|KDPA_HALSA|POTASSIUM-TRANSPORTING ATPase potassium-binding subunit|Halobacterium salinarum (strain

Query: 1 GFMDWIER 8
G++ W ER
Sbjct: 44 GYLSWFER 51


>sp|KDPA_HALS3|POTASSIUM-TRANSPORTING ATPase potassium-binding subunit|Halobacterium salinarum (strain

Query: 1 GFMDWIER 8
G++ W ER
Sbjct: 44 GYLSWFER 51


>sp|PORA_METJA|PYRUVATE synthase subunit PorA|Methanocaldococcus jannaschii (strain ATCC

Query: 2 FMDWIEREY 10
F +W +R+Y
Sbjct: 246 FAEWFKRKY 254


>sp|DNLI_THEFM|DNA ligase|Thermococcus fumicolans

Query: 2 FMDWIERE 9
F DW ERE
Sbjct: 50 FPDWDERE 57


>sp|ABLA_METMP|L-LYSINE 2,3-aminomutase|Methanococcus maripaludis (strain DSM 14266

Query: 2 FMDWIERE 9
F+DWI E
Sbjct: 191 FLDWILSE 198


>sp|ALAXM_METBF|ALANYL-TRNA editing protein AlaX-M|Methanosarcina barkeri (strain Fusaro /

Query: 1 GFMDWIER 8
GF+DW R
Sbjct: 91 GFIDWDRR 98


>sp|Y947_ARCFU|PUTATIVE RNase AF_0947|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 MDWIERE 9
++W+ERE
Sbjct: 10 LEWVERE 16


>sp|PAN_THEON|PROTEASOME-ACTIVATING nucleotidase|Thermococcus onnurineus (strain NA1)

Query: 5 WIERE 9
WIERE
Sbjct: 92 WIERE 96


>sp|Y871_METJA|UNCHARACTERIZED protein MJ0871|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GFMDWIER 8
GF D++E+
Sbjct: 205 GFFDYVEK 212


>sp|CSG_HALJT|CELL surface glycoprotein|Haloarcula japonica (strain ATCC 49778

Query: 1 GFMDWIEREY 10
GF IE EY
Sbjct: 641 GFASLIEEEY 650


>sp|Y806_METJA|UNCHARACTERIZED peptidase MJ0806|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GFMDWIEREY 10
G++ +I++EY
Sbjct: 100 GYLKYIDKEY 109


>sp|KAD6_PYRAE|PUTATIVE adenylate kinase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GFMDWIER 8
GF+++IER
Sbjct: 180 GFLEFIER 187


>sp|DP2L_NANEQ|DNA polymerase II large subunit|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 GFMDW 5
GF+DW
Sbjct: 72 GFLDW 76


>sp|PURL_ARCFU|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GFMDWIEREY 10
F +WI R+Y
Sbjct: 445 AFKEWIVRQY 454


>sp|TSGAD_HALVD|PUTATIVE ABC transporter glucose-binding protein|Haloferax volcanii (strain

Query: 4 DWIEREY 10
DW+E EY
Sbjct: 104 DWLETEY 110


>sp|DNLI_THEON|DNA ligase|Thermococcus onnurineus (strain NA1)

Query: 2 FMDWIERE 9
F DW ERE
Sbjct: 53 FPDWDERE 60


>sp|DNLI_THEKO|DNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 FMDWIERE 9
F DW ERE
Sbjct: 50 FPDWDERE 57


>sp|ACDB1_METTE|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanosarcina

Query: 5 WIEREY 10
W++REY
Sbjct: 296 WVDREY 301


>sp|MOBA_THESM|PROBABLE molybdenum cofactor guanylyltransferase|Thermococcus sibiricus

Query: 2 FMDWIEREY 10
F+DWI ++
Sbjct: 101 FVDWIVEKF 109


>sp|ACDB2_METMA|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanosarcina mazei

Query: 5 WIEREY 10
W++REY
Sbjct: 297 WVDREY 302


>sp|ACDB1_METMA|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanosarcina mazei

Query: 5 WIEREY 10
W++REY
Sbjct: 296 WVDREY 301


>sp|IF1A3_METAC|TRANSLATION initiation factor 1A 3|Methanosarcina acetivorans (strain ATCC

Query: 3 MDWIERE 9
+DW+ER+
Sbjct: 100 VDWLERK 106


>sp|SYM_IGNH4|METHIONINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 GFMDWIER 8
G ++W+ER
Sbjct: 198 GLVEWLER 205


>sp|ATGT_METJA|TRNA-GUANINE(15) transglycosylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 FMDWIERE 9
F+DW++++
Sbjct: 467 FIDWLKKK 474




35|SequenceR|180|171|NAFFVGFMDW

>sp|CAS1_KORCO|CRISPR-ASSOCIATED endonuclease Cas1|Korarchaeum cryptofilum (strain OPF8)

Query: 3 FFVGFMDW 10
FF FM+W
Sbjct: 295 FFSDFMNW 302


>sp|DP2L_NANEQ|DNA polymerase II large subunit|Nanoarchaeum equitans (strain Kin4-M)

Query: 6 GFMDW 10
GF+DW
Sbjct: 72 GFLDW 76


>sp|SYA_METB6|ALANINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 NAFFVGFMD 9
NA F G MD
Sbjct: 293 NARFAGLMD 301


>sp|FLUC_METKA|FLUORIDE-SPECIFIC ion channel FluC|Methanopyrus kandleri (strain AV19 /

Query: 2 AFFVGFMDW 10
+F +GF+ W
Sbjct: 48 SFVLGFLTW 56


>sp|SYA_METLZ|ALANINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 NAFFVGFMD 9
NA F G MD
Sbjct: 293 NAKFAGLMD 301


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 NAFFVGFMD 9
NA F G MD
Sbjct: 293 NAKFAGLMD 301


>sp|FPRA_METJA|COENZYME F420H(2) oxidase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 FFVGFMDW 10
++VG +DW
Sbjct: 16 YWVGVLDW 23


>sp|TRPE2_HALMA|ANTHRANILATE synthase component 1 2|Haloarcula marismortui (strain ATCC 43049

Query: 5 VGFMDW 10
VG+ DW
Sbjct: 453 VGYFDW 458


>sp|Y732_METJA|UNCHARACTERIZED protein MJ0732|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 FFVGFMDW 10
++VG +DW
Sbjct: 13 YWVGVIDW 20


>sp|Y1530_METJA|UNCHARACTERIZED N-acetyltransferase MJ1530|Methanocaldococcus jannaschii (strain

Query: 2 AFFVGFMDW 10
+ +G MDW
Sbjct: 53 GYILGSMDW 61




36|SequenceR|185|176|RLDPHNAFFV

>sp|NRPR_METMP|GLOBAL nitrogen regulator NrpR|Methanococcus maripaludis (strain DSM 14266

Query: 2 LDPHNAFF 9
LDPH FF
Sbjct: 432 LDPHEVFF 439


>sp|NRPR_METJA|GLOBAL nitrogen regulator NrpR|Methanocaldococcus jannaschii (strain ATCC

Query: 2 LDPHNAFF 9
LDPH FF
Sbjct: 438 LDPHEVFF 445


>sp|AMTAB_PYRHO|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 1 RLDPHNAFFV 10
RL P N +F+
Sbjct: 132 RLSPRNVYFI 141


>sp|NADK_THEON|NAD kinase|Thermococcus onnurineus (strain NA1)

Query: 2 LDPHNAFF 9
++PH AFF
Sbjct: 97 VEPHEAFF 104


>sp|EF2_IGNH4|ELONGATION factor 2|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 RLDPHNAFFV 10
RLDPH V
Sbjct: 303 RLDPHTKRLV 312


>sp|FLAB5_THEKO|FLAGELLIN B5|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 LDPHNAFFV 10
DP+N F++
Sbjct: 152 FDPNNKFYI 160


>sp|CCA_NANEQ|CCA-ADDING enzyme|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 LDPHNAFFV 10
L+ HN FF+
Sbjct: 347 LEKHNKFFI 355


>sp|CRTD_HALJT|CAROTENOID 3,4-desaturase|Haloarcula japonica (strain ATCC 49778

Query: 1 RLDPHNAFF 9
RLDPH F
Sbjct: 87 RLDPHYRIF 95


>sp|HEM3_METAR|PROBABLE porphobilinogen deaminase|Methanocella arvoryzae (strain DSM 22066

Query: 1 RLDPHN 6
RLDP+N
Sbjct: 178 RLDPYN 183


>sp|HEM3_SULTO|PROBABLE porphobilinogen deaminase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 RLDPH 5
RLDPH
Sbjct: 177 RLDPH 181


>sp|PSTB_METBU|PHOSPHATE import ATP-binding protein PstB|Methanococcoides burtonii (strain

Query: 1 RLDPHNAFFV 10
R+ H AFF+
Sbjct: 215 RISDHTAFFL 224


>sp|TRM1_METKA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanopyrus kandleri

Query: 2 LDPHNAFF 9
+PH AFF
Sbjct: 205 FEPHIAFF 212


>sp|NADK_THEKO|NAD kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 LDPHNAFF 9
++PH FF
Sbjct: 97 VEPHETFF 104




37|SequenceR|190|181|DTLIRRLDPH

>sp|SURE_PICTO|5'-NUCLEOTIDASE SurE|Picrophilus torridus (strain ATCC 700027

Query: 1 DTLIRRLDPH 10
D +I+RLDP+
Sbjct: 185 DNIIKRLDPN 194


>sp|GSA_METTH|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanothermobacter thermautotrophicus (strain

Query: 4 IRRLDPH 10
+RR DPH
Sbjct: 22 VRRFDPH 28


>sp|AGLUS_METJA|ARCHAEAL glutamate synthase [NADPH]|Methanocaldococcus jannaschii (strain

Query: 3 LIRRLDP 9
L++RLDP
Sbjct: 444 LVKRLDP 450


>sp|Y3524_METJA|UNCHARACTERIZED protein MJECL24|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 DTLIRRLDPH 10
DTL+ LDP
Sbjct: 32 DTLVIDLDPQ 41


>sp|ARGB_METTH|ACETYLGLUTAMATE kinase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 DTLIRRL 7
DTLIRR+
Sbjct: 224 DTLIRRI 230


>sp|G3PP_PYRFU|GLYCERALDEHYDE 3-phosphate phosphatase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 DTLIRRLD 8
D L+RRLD
Sbjct: 65 DYLLRRLD 72


>sp|G3PP_PYRAB|GLYCERALDEHYDE 3-phosphate phosphatase|Pyrococcus abyssi (strain GE5 /

Query: 1 DTLIRRLD 8
D L+RRLD
Sbjct: 63 DYLLRRLD 70


>sp|G3PP_PYRHO|GLYCERALDEHYDE 3-phosphate phosphatase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 DTLIRRLD 8
D L+RRLD
Sbjct: 63 DYLLRRLD 70




38|SequenceR|195|186|GEFGYDTLIR

>sp|MFNB_METKA|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanopyrus kandleri (strain AV19 /

Query: 2 EFGYDTLI 9
EFGYDT +
Sbjct: 112 EFGYDTRV 119


>sp|Y1094_METJA|UNCHARACTERIZED protein MJ1094|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EFGYDTLI 9
EFG+D LI
Sbjct: 336 EFGFDKLI 343


>sp|CARB_METMJ|CARBAMOYL phosphate synthase large chain|Methanoculleus marisnigri (strain

Query: 1 GEFGYDTLIR 10
GE GY L+R
Sbjct: 689 GEIGYPVLVR 698


>sp|COFG_HALSA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Halobacterium salinarum (strain ATCC 700922

Query: 1 GEFGYDTL 8
GE+GYD++
Sbjct: 112 GEWGYDSI 119


>sp|COFG_HALS3|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Halobacterium salinarum (strain ATCC 29341

Query: 1 GEFGYDTL 8
GE+GYD++
Sbjct: 112 GEWGYDSI 119


>sp|G6PI_HALMA|PROBABLE glucose-6-phosphate isomerase|Haloarcula marismortui (strain ATCC

Query: 1 GEFGYDTL 8
GEFGY +L
Sbjct: 43 GEFGYASL 50


>sp|Y3524_METJA|UNCHARACTERIZED protein MJECL24|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GEFGYDTLI 9
E GYDTL+
Sbjct: 27 AEKGYDTLV 35


>sp|NROR_PYRFU|NAD(P)H:RUBREDOXIN oxidoreductase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GEFGYDTLI 9
GE YDTL+
Sbjct: 90 GEVPYDTLV 98


>sp|SYI_METMA|ISOLEUCINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GEFGYDTL 8
G FG DTL
Sbjct: 612 GRFGADTL 619


>sp|MDH_AERPE|MALATE dehydrogenase|Aeropyrum pernix (strain ATCC 700893

Query: 1 GEFGYDTLI 9
GE+GY+ ++
Sbjct: 252 GEYGYNDIV 260


>sp|AROE_SULAC|SHIKIMATE dehydrogenase (NADP(+))|Sulfolobus acidocaldarius (strain ATCC

Query: 2 EFGYDTLI 9
EFGYD I
Sbjct: 164 EFGYDIKI 171


>sp|COFG_METS3|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 GEFGYDTLI 9
EFGY+ ++
Sbjct: 88 AEFGYENIV 96


>sp|OFOB2_AERPE|2-OXOACID:FERREDOXIN oxidoreductase 2, subunit beta|Aeropyrum pernix (strain ATCC 700893

Query: 2 EFGYDTLIR 10
E GYD +IR
Sbjct: 222 EEGYDPIIR 230


>sp|ASSY_HALSA|ARGININOSUCCINATE synthase|Halobacterium salinarum (strain ATCC 700922

Query: 2 EFGYDTLI 9
E+GYD +I
Sbjct: 26 EYGYDDVI 33


>sp|RADA_NANEQ|DNA repair and recombination protein|Nanoarchaeum equitans (strain

Query: 4 GYDTLIR 10
GYD+LI+
Sbjct: 31 GYDSLIK 37


>sp|ASSY_HALWD|ARGININOSUCCINATE synthase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 EFGYDTLI 9
E+GYD +I
Sbjct: 24 EYGYDEVI 31


>sp|ASSY_METBU|ARGININOSUCCINATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 2 EFGYDTLI 9
E+GYD +I
Sbjct: 25 EYGYDEVI 32


>sp|TFRB_METTM|FUMARATE reductase (CoM/CoB) subunit B|Methanothermobacter marburgensis

Query: 4 GYDTLI 9
GYDT+I
Sbjct: 326 GYDTII 331


>sp|RADA_PYRFU|DNA repair and recombination protein|Pyrococcus furiosus (strain ATCC

Query: 2 EFGYDTL 8
E GYDTL
Sbjct: 53 EAGYDTL 59


>sp|MDH_HALVD|MALATE dehydrogenase|Haloferax volcanii (strain ATCC 29605

Query: 1 GEFGYD 6
GEFGY+
Sbjct: 253 GEFGYE 258


>sp|ASSY_HALMA|ARGININOSUCCINATE synthase|Haloarcula marismortui (strain ATCC 43049

Query: 2 EFGYDTLI 9
E+GYD +I
Sbjct: 28 EYGYDEVI 35


>sp|AATA_SACI6|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain M.16.4 /

Query: 4 GYDTLI 9
GYDTL+
Sbjct: 322 GYDTLL 327


>sp|AATA_SACI4|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain M.14.25 /

Query: 4 GYDTLI 9
GYDTL+
Sbjct: 322 GYDTLL 327


>sp|AATA_SACI3|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain M.16.27)

Query: 4 GYDTLI 9
GYDTL+
Sbjct: 322 GYDTLL 327


>sp|AATA_SACI2|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain L.S.2.15 /

Query: 4 GYDTLI 9
GYDTL+
Sbjct: 322 GYDTLL 327


>sp|AATA_SACI7|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 4 GYDTLI 9
GYDTL+
Sbjct: 322 GYDTLL 327


>sp|AATA_SACI1|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 4 GYDTLI 9
GYDTL+
Sbjct: 322 GYDTLL 327


>sp|RAD50_METJA|DNA double-strand break repair Rad50|Methanocaldococcus jannaschii

Query: 3 FGYDTLI 9
F YDT+I
Sbjct: 56 FNYDTII 62


>sp|AATA_SACS2|A-TYPE ATP synthase subunit A|Saccharolobus solfataricus (strain ATCC

Query: 4 GYDTLI 9
GYDTL+
Sbjct: 322 GYDTLL 327


>sp|RL30_STAMF|LARGE ribosomal subunit protein uL30|Staphylothermus marinus (strain

Query: 1 GEFGYDTLI 9
GE Y+TL+
Sbjct: 59 GEINYETLV 67


>sp|RL30_SACI7|LARGE ribosomal subunit protein uL30|Saccharolobus islandicus (strain

Query: 1 GEFGY 5
GEFGY
Sbjct: 141 GEFGY 145


>sp|ASSY_NATPD|ARGININOSUCCINATE synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 EFGYDTLI 9
E+GYD +I
Sbjct: 27 EYGYDEVI 34


>sp|ACDG_METKA|ACETYL-COA decarbonylase/synthase complex subunit gamma|Methanopyrus kandleri

Query: 3 FGYDTLI 9
FGY TL+
Sbjct: 263 FGYPTLV 269


>sp|PLS_PYRFU|PYROLYSIN furiosus (strain ATCC 43587

Query: 2 EFGYD 6
EFGYD
Sbjct: 165 EFGYD 169


>sp|MES_EURX9|METALLOPTERIN-DEPENDENT ergothioneine synthase|Euryarchaeota archaeon (strain ADurb.Bin009)

Query: 2 EFGYDTL 8
E+GYD L
Sbjct: 569 EYGYDPL 575


>sp|RL30_SACS2|LARGE ribosomal subunit protein uL30|Saccharolobus solfataricus (strain

Query: 1 GEFGY 5
GEFGY
Sbjct: 141 GEFGY 145


>sp|RL30_SACI6|LARGE ribosomal subunit protein uL30|Saccharolobus islandicus (strain

Query: 1 GEFGY 5
GEFGY
Sbjct: 141 GEFGY 145


>sp|RL30_SACI4|LARGE ribosomal subunit protein uL30|Saccharolobus islandicus (strain

Query: 1 GEFGY 5
GEFGY
Sbjct: 141 GEFGY 145


>sp|RL30_SACI3|LARGE ribosomal subunit protein uL30|Saccharolobus islandicus (strain

Query: 1 GEFGY 5
GEFGY
Sbjct: 141 GEFGY 145


>sp|RL30_SACI2|LARGE ribosomal subunit protein uL30|Saccharolobus islandicus (strain

Query: 1 GEFGY 5
GEFGY
Sbjct: 141 GEFGY 145


>sp|RL30_SACI1|LARGE ribosomal subunit protein uL30|Saccharolobus islandicus (strain

Query: 1 GEFGY 5
GEFGY
Sbjct: 141 GEFGY 145


>sp|FSX1_NATA2|FUSEXIN 1|Natrinema altunense (strain JCM 12890

Query: 3 FGYDTL 8
FGYD+L
Sbjct: 413 FGYDSL 418


>sp|RL30_SULAC|LARGE ribosomal subunit protein uL30|Sulfolobus acidocaldarius (strain

Query: 1 GEFGY 5
GEFGY
Sbjct: 139 GEFGY 143


>sp|ASSY_METHJ|ARGININOSUCCINATE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 EFGYDTLI 9
E+GYD ++
Sbjct: 26 EYGYDRVV 33




39|SequenceR|200|191|KRFPHGEFGY

>sp|NEP1_SACS2|RIBOSOMAL RNA small subunit methyltransferase|Saccharolobus solfataricus

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 174 FPHGDF 179


>sp|NEP1_SULTO|RIBOSOMAL RNA small subunit methyltransferase|Sulfurisphaera tokodaii (strain

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 175 FPHGDF 180


>sp|NEP1_PYRAE|RIBOSOMAL RNA small subunit methyltransferase|Pyrobaculum aerophilum (strain

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 176 FPHGDF 181


>sp|NEP1_PYRIL|RIBOSOMAL RNA small subunit methyltransferase|Pyrobaculum islandicum (strain

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 176 FPHGDF 181


>sp|NEP1_THESM|RIBOSOMAL RNA small subunit methyltransferase|Thermococcus sibiricus (strain

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 180 FPHGDF 185


>sp|NEP1_PYRFU|RIBOSOMAL RNA small subunit methyltransferase|Pyrococcus furiosus (strain

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 183 FPHGDF 188


>sp|NEP1_PYRAR|RIBOSOMAL RNA small subunit methyltransferase|Pyrobaculum arsenaticum (strain

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 176 FPHGDF 181


>sp|NEP1_PYRHO|RIBOSOMAL RNA small subunit methyltransferase|Pyrococcus horikoshii (strain

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 185 FPHGDF 190


>sp|NEP1_PYRAB|RIBOSOMAL RNA small subunit methyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 185 FPHGDF 190


>sp|NEP1_THEON|RIBOSOMAL RNA small subunit methyltransferase|Thermococcus onnurineus (strain

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 180 FPHGDF 185


>sp|NEP1_THEKO|RIBOSOMAL RNA small subunit methyltransferase|Thermococcus kodakarensis

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 180 FPHGDF 185


>sp|Y1052_THEAC|UNCHARACTERIZED solute-binding protein Ta1052|Thermoplasma acidophilum (strain ATCC

Query: 5 HGEFGY 10
HG+FGY
Sbjct: 221 HGQFGY 226


>sp|NEP1_PYRNV|RIBOSOMAL RNA small subunit methyltransferase|Pyrobaculum neutrophilum

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 176 FPHGDF 181


>sp|NEP1_PYRCJ|RIBOSOMAL RNA small subunit methyltransferase|Pyrobaculum calidifontis

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 176 FPHGDF 181


>sp|RS10_SULTO|SMALL ribosomal subunit protein uS10|Sulfurisphaera tokodaii (strain

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|RS10_SULAC|SMALL ribosomal subunit protein uS10|Sulfolobus acidocaldarius (strain

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|RS10_SACS2|SMALL ribosomal subunit protein uS10|Saccharolobus solfataricus (strain

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|RS10_SACI7|SMALL ribosomal subunit protein uS10|Saccharolobus islandicus (strain

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|RS10_SACI6|SMALL ribosomal subunit protein uS10|Saccharolobus islandicus (strain

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|RS10_SACI4|SMALL ribosomal subunit protein uS10|Saccharolobus islandicus (strain

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|RS10_SACI3|SMALL ribosomal subunit protein uS10|Saccharolobus islandicus (strain

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|RS10_SACI2|SMALL ribosomal subunit protein uS10|Saccharolobus islandicus (strain

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|RS10_SACI1|SMALL ribosomal subunit protein uS10|Saccharolobus islandicus (strain

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|RS10_METS5|SMALL ribosomal subunit protein uS10|Metallosphaera sedula (strain ATCC

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|Y1303_METHJ|UPF0182 protein Mhun_1303|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 RFPHGEF 8
R+PHG F
Sbjct: 647 RYPHGLF 653


>sp|KPRS_THEVO|RIBOSE-PHOSPHATE pyrophosphokinase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 KRFPHGEF 8
+RFP GE
Sbjct: 30 RRFPDGEL 37


>sp|KPRS_THEAC|RIBOSE-PHOSPHATE pyrophosphokinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 KRFPHGEF 8
+RFP GE
Sbjct: 30 RRFPDGEL 37


>sp|RS10_AERPE|SMALL ribosomal subunit protein uS10|Aeropyrum pernix (strain ATCC

Query: 2 RFPHGE 7
R PHGE
Sbjct: 52 RLPHGE 57


>sp|GGR_METB6|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanoregula boonei (strain DSM 21154

Query: 1 KRFPHGE 7
++FPHG+
Sbjct: 246 QKFPHGK 252


>sp|KPRS_THEKO|RIBOSE-PHOSPHATE pyrophosphokinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 KRFPHGE 7
KRFP GE
Sbjct: 28 KRFPDGE 34


>sp|FAU1_METKA|PROBABLE ribonuclease FAU-1|Methanopyrus kandleri (strain AV19 /

Query: 1 KRFPHGEF 8
+RFP EF
Sbjct: 35 RRFPDAEF 42


>sp|KPRS2_ARCFU|RIBOSE-PHOSPHATE pyrophosphokinase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KRFPHGEF 8
K+FP GE
Sbjct: 30 KKFPDGEL 37


>sp|MTAB_METBF|METHANOL--CORRINOID protein co-methyltransferase|Methanosarcina barkeri (strain Fusaro

Query: 5 HGEFG 9
HGEFG
Sbjct: 318 HGEFG 322


>sp|NEP1_ARCFU|RIBOSOMAL RNA small subunit methyltransferase|Archaeoglobus fulgidus (strain

Query: 3 FPHGEF 8
FPHG+F
Sbjct: 171 FPHGDF 176


>sp|KPRS_PYRHO|RIBOSE-PHOSPHATE pyrophosphokinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 KRFPHGE 7
K+FP GE
Sbjct: 30 KKFPDGE 36


>sp|KPRS_PYRFU|RIBOSE-PHOSPHATE pyrophosphokinase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 KRFPHGE 7
K+FP GE
Sbjct: 27 KKFPDGE 33


>sp|KPRS_METS3|RIBOSE-PHOSPHATE pyrophosphokinase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 KRFPHGE 7
K+FP GE
Sbjct: 29 KKFPDGE 35


>sp|RS8_METJA|SMALL ribosomal subunit protein uS8|Methanocaldococcus jannaschii

Query: 2 RFPHGEFGY 10
RFP +FGY
Sbjct: 78 RFPVKKFGY 86


>sp|CRUF_HALJT|BISANHYDROBACTERIORUBERIN hydratase|Haloarcula japonica (strain ATCC 49778

Query: 3 FPHGEFGY 10
+P+GEF Y
Sbjct: 113 WPYGEFTY 120


>sp|NEP1_STAMF|RIBOSOMAL RNA small subunit methyltransferase|Staphylothermus marinus (strain

Query: 3 FPHGEF 8
FPHG++
Sbjct: 186 FPHGDY 191


>sp|KPRS_PYRAB|RIBOSE-PHOSPHATE pyrophosphokinase|Pyrococcus abyssi (strain GE5 /

Query: 1 KRFPHGE 7
K+FP GE
Sbjct: 30 KKFPDGE 36


>sp|RIFK_METKA|RIBOFLAVIN kinase|Methanopyrus kandleri (strain AV19 /

Query: 4 PHGEFG 9
PHGE+G
Sbjct: 70 PHGEYG 75


>sp|PRIS_METM5|DNA primase small subunit PriS|Methanococcus maripaludis (strain C5 /

Query: 3 FPHGEFGY 10
PH E GY
Sbjct: 38 LPHREIGY 45


>sp|CATA_METBF|CATALASE barkeri (strain Fusaro /

Query: 1 KRFPHGEF 8
K +PHG+F
Sbjct: 284 KVWPHGDF 291


>sp|PRIS_METM7|DNA primase small subunit PriS|Methanococcus maripaludis (strain C7 /

Query: 3 FPHGEFGY 10
PH E GY
Sbjct: 38 LPHREIGY 45


>sp|RS12_PYRHO|SMALL ribosomal subunit protein uS12|Pyrococcus horikoshii (strain ATCC

Query: 1 KRFPHGEF 8
K+ P+GEF
Sbjct: 4 KKAPNGEF 11


>sp|RS12_PYRFU|SMALL ribosomal subunit protein uS12|Pyrococcus furiosus (strain ATCC

Query: 1 KRFPHGEF 8
K+ P+GEF
Sbjct: 4 KKAPNGEF 11


>sp|RS12_PYRAB|SMALL ribosomal subunit protein uS12|Pyrococcus abyssi (strain GE5 /

Query: 1 KRFPHGEF 8
K+ P+GEF
Sbjct: 4 KKAPNGEF 11


>sp|RL10E_HYPBU|LARGE ribosomal subunit protein uL16|Hyperthermus butylicus (strain DSM

Query: 4 PHGEFGY 10
PHG++ Y
Sbjct: 44 PHGDYDY 50




40|SequenceR|205|196|SLPFDKRFPH

>sp|GGR_THEKO|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 LPFDKRF 8
+P+DKRF
Sbjct: 59 IPYDKRF 65


>sp|GGR_THEGJ|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Thermococcus gammatolerans (strain DSM 15229

Query: 2 LPFDKRF 8
+P+DKRF
Sbjct: 59 IPYDKRF 65


>sp|GGR_PYRHO|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 LPFDKRF 8
+P+DKRF
Sbjct: 57 IPYDKRF 63


>sp|GGR_PYRFU|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LPFDKRF 8
+P+DKRF
Sbjct: 57 IPYDKRF 63


>sp|GGR_PYRAB|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Pyrococcus abyssi (strain GE5 /

Query: 2 LPFDKRF 8
+P+DKRF
Sbjct: 57 IPYDKRF 63


>sp|CARB_METLZ|CARBAMOYL phosphate synthase large chain|Methanocorpusculum labreanum (strain

Query: 1 SLPFDKRFP 9
S P D+RFP
Sbjct: 414 SRPTDERFP 422


>sp|CMR2_PYRFU|CRISPR system Cmr subunit Cmr2|Pyrococcus furiosus (strain ATCC 43587

Query: 1 SLPFDKRFP 9
+LP D RFP
Sbjct: 192 NLPADTRFP 200


>sp|ADEC_CENSY|ADENINE deaminase|Cenarchaeum symbiosum (strain A)

Query: 2 LPFDKRFPH 10
LP D RF H
Sbjct: 146 LPVDGRFSH 154


>sp|CDC62_SACS2|ORC1-TYPE DNA replication protein 2|Saccharolobus solfataricus (strain ATCC

Query: 1 SLPFDKRF 8
SLP DKR
Sbjct: 390 SLPLDKRL 397


>sp|Y1020_PYRFU|PUTATIVE phosphate permease PF1020|Pyrococcus furiosus (strain ATCC 43587

Query: 1 SLPFDKRFP 9
SL +KRFP
Sbjct: 230 SLILEKRFP 238


>sp|APGM_METVS|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcus vannielii (strain ATCC 35089

Query: 2 LPFDKRF 8
+PFDK++
Sbjct: 230 IPFDKKY 236




41|SequenceR|210|201|LEVYGSLPFD

>sp|Y823_METJA|UNCHARACTERIZED ATP-binding protein MJ0823|Methanocaldococcus jannaschii (strain

Query: 1 LEVYGSLPFD 10
LEV G +P+D
Sbjct: 211 LEVLGFVPYD 220


>sp|MAP2_PYRFU|METHIONINE aminopeptidase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 YGSLPF 9
YG+LPF
Sbjct: 230 YGTLPF 235


>sp|CDPAS_ARCFU|CDP-ARCHAEOL synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LEVYGSLPFD 10
L +Y SLPF+
Sbjct: 76 LAIYSSLPFN 85


>sp|RL18A_PYRAE|LARGE ribosomal subunit protein eL20|Pyrobaculum aerophilum (strain

Query: 1 LEVYGSLPFD 10
LEV G P+D
Sbjct: 19 LEVLGEKPYD 28


>sp|HIS4_PYRAE|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Pyrobaculum aerophilum (strain

Query: 3 VYGSLPF 9
V GSLPF
Sbjct: 96 VVGSLPF 102


>sp|Y419_ARCFU|UNCHARACTERIZED protein AF_0419|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LEVYGSLPF 9
LE YG PF
Sbjct: 47 LENYGDKPF 55


>sp|Y085_METJA|UNCHARACTERIZED lipoprotein MJ0085|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EVYGSLPFD 10
+VYG LP++
Sbjct: 301 DVYGLLPYN 309


>sp|PGMI_THEVO|BIFUNCTIONAL phosphoglucose/phosphomannose isomerase|Thermoplasma volcanium

Query: 3 VYGSLPF 9
+YGS PF
Sbjct: 177 IYGSRPF 183


>sp|ACDA2_METKA|PUTATIVE acetyl-CoA decarbonylase/synthase complex subunit|Methanopyrus

Query: 2 EVYGSLPFD 10
E+YG LP D
Sbjct: 581 ELYGELPPD 589


>sp|SYH_SACS2|HISTIDINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LEVYGSLP 8
+E+YG LP
Sbjct: 301 IELYGGLP 308


>sp|TIAS_ARCFU|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Archaeoglobus fulgidus (strain

Query: 1 LEVYGSLPFD 10
+EVYGS+ D
Sbjct: 320 VEVYGSMKKD 329


>sp|SYH_SACI6|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 LEVYGSLP 8
+E+YG LP
Sbjct: 301 IELYGGLP 308


>sp|SYH_SACI4|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 LEVYGSLP 8
+E+YG LP
Sbjct: 301 IELYGGLP 308


>sp|SYH_SACI2|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 LEVYGSLP 8
+E+YG LP
Sbjct: 301 IELYGGLP 308


>sp|SYH_SACSH|HISTIDINE--TRNA ligase|Saccharolobus shibatae (strain ATCC 51178

Query: 1 LEVYGSLP 8
+E+YG LP
Sbjct: 301 IELYGGLP 308


>sp|SYH_SACI7|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 LEVYGSLP 8
+E+YG LP
Sbjct: 301 IELYGGLP 308


>sp|SYS_STAMF|SERINE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 1 LEVYGSLPFD 10
LEV+ S P D
Sbjct: 440 LEVFKSAPID 449


>sp|SYH_SACI1|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 LEVYGSLP 8
+E+YG LP
Sbjct: 301 IELYGGLP 308


>sp|SYH_SACI3|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 LEVYGSLP 8
+E+YG LP
Sbjct: 301 IELYGGLP 308


>sp|Y635_METJA|UNCHARACTERIZED protein MJ0635|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LEVYGSLPFD 10
+E+Y LP D
Sbjct: 182 MEIYDRLPSD 191


>sp|Y718_METJA|UNCHARACTERIZED transporter MJ0718|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 YGSLPF 9
YGS+PF
Sbjct: 254 YGSVPF 259




42|SequenceR|215|206|EDDYRLEVYG

>sp|KHSE_PYRFU|HOMOSERINE kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 DDYRLEVYG 10
DD+R+EV G
Sbjct: 36 DDFRIEVEG 44


>sp|GYAR_PYRHO|GLYOXYLATE reductase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 EDDYRLEVYG 10
ED++ +EV+G
Sbjct: 20 EDEFEVEVWG 29


>sp|ALF1_PYRFU|FRUCTOSE-BISPHOSPHATE aldolase class 1|Pyrococcus furiosus (strain ATCC 43587

Query: 1 EDDYRLEVYG 10
++DYR+ +YG
Sbjct: 169 KEDYRVVMYG 178


>sp|ALF1_PYRAB|FRUCTOSE-BISPHOSPHATE aldolase class 1|Pyrococcus abyssi (strain GE5 /

Query: 1 EDDYRLEVYG 10
++DYR+ +YG
Sbjct: 169 KEDYRVVMYG 178


>sp|ENO_SULTO|ENOLASE tokodaii (strain DSM 16993

Query: 1 EDDYRLEVYG 10
E+DY +E YG
Sbjct: 402 ENDYGIEYYG 411


>sp|ALF1_PYRHO|FRUCTOSE-BISPHOSPHATE aldolase class 1|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 EDDYRLEVYG 10
++DYR+ +YG
Sbjct: 169 KEDYRVVMYG 178


>sp|ALF1_THEKO|FRUCTOSE-BISPHOSPHATE aldolase class 1|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 EDDYRLEVYG 10
++DYR+ +YG
Sbjct: 169 KEDYRVVMYG 178


>sp|RNZ_METTH|RIBONUCLEASE Z|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 EDDYRL 6
EDDYR+
Sbjct: 126 EDDYRV 131


>sp|NADM2_SULAC|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 DYRLEVYG 10
DY LE++G
Sbjct: 154 DYLLEIHG 161


>sp|Y155_ARCFU|UNCHARACTERIZED protein AF_0155|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EDDYRLEVY 9
E D +LEVY
Sbjct: 72 ESDAKLEVY 80


>sp|ARGD_METJA|ACETYLORNITHINE aminotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EDDYRLEVYG 10
E Y L++YG
Sbjct: 10 EKKYHLQIYG 19


>sp|AATE_HYPBU|A-TYPE ATP synthase subunit E|Hyperthermus butylicus (strain DSM 5456

Query: 3 DYRLEV 8
DYRLEV
Sbjct: 183 DYRLEV 188


>sp|SRP54_PYRAB|SIGNAL recognition particle 54 kDa|Pyrococcus abyssi (strain GE5 /

Query: 2 DDYRLEVYG 10
D Y +EV+G
Sbjct: 152 DPYHIEVFG 160


>sp|Y1008_CALMQ|UPF0179 protein Cmaq_1008|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 EDDYRLEVYG 10
E+ YR ++YG
Sbjct: 25 EECYRCKLYG 34


>sp|SRP54_PYRFU|SIGNAL recognition particle 54 kDa|Pyrococcus furiosus (strain ATCC 43587

Query: 2 DDYRLEVYG 10
D Y +EV+G
Sbjct: 152 DRYHIEVFG 160


>sp|SRP54_PYRHO|SIGNAL recognition particle 54 kDa|Pyrococcus horikoshii (strain ATCC

Query: 2 DDYRLEVYG 10
D Y +EV+G
Sbjct: 152 DPYHIEVFG 160


>sp|RS3A_NATPD|SMALL ribosomal subunit protein eS1|Natronomonas pharaonis (strain ATCC

Query: 2 DDYRLEV 8
DDYR++V
Sbjct: 110 DDYRVQV 116


>sp|SYA_METBF|ALANINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 EDDYRLEVY 9
ED+Y+LE +
Sbjct: 3 EDEYQLEFF 11


>sp|LEU1_METJA|2-ISOPROPYLMALATE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EDDYRLEVY 9
E DY +EVY
Sbjct: 162 EIDYLIEVY 170


>sp|DNAK_METTP|CHAPERONE protein DnaK|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 DYRLEVYG 10
DY+++V+G
Sbjct: 80 DYKVKVFG 87




43|SequenceR|220|211|VVRKVEDDYR

>sp|Y303_PYRFU|UPF0284 protein PF0303|Pyrococcus furiosus (strain ATCC 43587

Query: 1 VVRKVEDDYR 10
VVRKVE+ YR
Sbjct: 318 VVRKVEELYR 327


>sp|SYW_SULAC|TRYPTOPHAN--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 VRKVEDDYR 10
+RK+E+DYR
Sbjct: 319 IRKIEEDYR 327


>sp|GPGS_METBU|GLUCOSYL-3-PHOSPHOGLYCERATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 VVRKVEDDYR 10
V+RK DDYR
Sbjct: 355 VIRKAGDDYR 364


>sp|SYW_SULTO|TRYPTOPHAN--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 VRKVEDDYR 10
++K+E+DYR
Sbjct: 319 IKKIEEDYR 327


>sp|CDC61_ARCFU|ORC1-TYPE DNA replication protein 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VVRKVEDDY 9
VRK+E DY
Sbjct: 277 AVRKIETDY 285


>sp|NREA_HALVD|DNA repair protein NreA|Haloferax volcanii (strain ATCC 29605

Query: 1 VVRKVEDDY 9
V+R V DDY
Sbjct: 349 VIRHVSDDY 357


>sp|MTXA_METAC|PUTATIVE methyltransferase Mtx subunit A|Methanosarcina acetivorans (strain

Query: 2 VRKVEDDYR 10
+RK+ +DYR
Sbjct: 137 IRKIVEDYR 145


>sp|RS12_METTP|SMALL ribosomal subunit protein uS12|Methanothrix thermoacetophila

Query: 1 VVRKVEDDYR 10
RK+EDD++
Sbjct: 7 AARKMEDDWK 16


>sp|Y771_ARCFU|UNCHARACTERIZED protein AF_0771|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VVRKVEDDYR 10
++R+ ++DY+
Sbjct: 129 IIRRFKEDYK 138


>sp|VHUB_METJA|POLYFERREDOXIN protein VhuB|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VRKVEDDY 9
++KV+DD+
Sbjct: 87 IKKVDDDF 94


>sp|RPO1C_ARCFU|DNA-DIRECTED RNA polymerase subunit Rpo1C|Archaeoglobus fulgidus (strain ATCC

Query: 1 VVRKVEDDY 9
++RK ED+Y
Sbjct: 225 IIRKEEDEY 233


>sp|Y1401_METJA|PROBABLE ATP-dependent helicase MJ1401|Methanocaldococcus jannaschii (strain

Query: 3 RKVEDDY 9
RKVEDD+
Sbjct: 471 RKVEDDF 477


>sp|DNLI_NITMS|DNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 2 VRKVEDDYR 10
++K+E++YR
Sbjct: 77 IKKIEEEYR 85


>sp|PFDA2_THEKO|PREFOLDIN subunit alpha 2|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 VVRKVEDDYR 10
++RK+E+D R
Sbjct: 115 LLRKIEEDTR 124


>sp|Y612_METJA|PROBABLE arogenate/prephenate dehydrogenase|Methanocaldococcus jannaschii

Query: 1 VVRKVEDDY 9
V++ +EDDY
Sbjct: 324 VLKDIEDDY 332


>sp|RGYR1_AERPE|REVERSE gyrase 1|Aeropyrum pernix (strain ATCC 700893

Query: 1 VVRKVEDDY 9
VVR+VED +
Sbjct: 849 VVRRVEDRW 857




44|SequenceR|225|216|EVPEAVVRKV

>sp|NADE_PICTO|NH(3)-DEPENDENT NAD(+) synthetase|Picrophilus torridus (strain ATCC 700027

Query: 1 EVPEAVVRK 9
+VPE+++RK
Sbjct: 170 KVPESIIRK 178


>sp|TOP6B_AERPE|TYPE 2 DNA topoisomerase 6|Aeropyrum pernix (strain ATCC 700893

Query: 1 EVPEAVVRKV 10
E PEA+VR++
Sbjct: 552 EDPEAIVRRI 561


>sp|NIFE_METTM|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 1 EVPEAVV 7
EVPEAV+
Sbjct: 26 EVPEAVI 32


>sp|DAPF_METKA|DIAMINOPIMELATE epimerase|Methanopyrus kandleri (strain AV19 /

Query: 1 EVPEAVVRKV 10
EVPEA ++KV
Sbjct: 114 EVPEAEIKKV 123


>sp|TRUB_METBF|PROBABLE tRNA pseudouridine synthase B|Methanosarcina barkeri (strain Fusaro

Query: 1 EVPEAVVRKV 10
E+P+ +VRKV
Sbjct: 115 EMPQKLVRKV 124


>sp|CHEB_METBU|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Methanococcoides

Query: 1 EVPEAVVRKV 10
E+PE +VR +
Sbjct: 335 EIPEQIVRMI 344


>sp|MTTB_METTE|TRIMETHYLAMINE methyltransferase MttB|Methanosarcina thermophila

Query: 1 EVPEAVVRK 9
++PE +VRK
Sbjct: 68 KIPEYIVRK 76


>sp|PSTK_METKA|L-SERYL-TRNA(SEC) kinase|Methanopyrus kandleri (strain AV19 /

Query: 2 VPEAVVRKV 10
+PE VVR++
Sbjct: 124 IPEEVVRRI 132


>sp|Y1287_METJA|UNCHARACTERIZED protein MJ1287|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PEAVVRKV 10
PEAV+R++
Sbjct: 137 PEAVIRRL 144


>sp|TDXH_ARCFU|PEROXIREDOXIN fulgidus (strain ATCC 49558

Query: 3 PEAVVRKV 10
PEAV+R V
Sbjct: 128 PEAVIRAV 135


>sp|CHEB_PYRAB|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Pyrococcus abyssi

Query: 1 EVPEAVVRKV 10
++PE VVR V
Sbjct: 342 KIPETVVRAV 351




45|SequenceR|230|221|FEQALEVPEA

>sp|MALA_HALJT|ALPHA-AMYLASE MalA|Haloarcula japonica (strain ATCC 49778

Query: 1 FEQALEVPEA 10
FE A+E P+A
Sbjct: 348 FESAVEGPDA 357


>sp|DEOC_THEKO|DEOXYRIBOSE-PHOSPHATE aldolase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 FEQALEVPEA 10
+EQALE+ EA
Sbjct: 195 YEQALEMIEA 204




46|SequenceR|235|226|LDFKRFEQAL

>sp|SYE_METBF|GLUTAMATE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 DFKRFEQA 9
DFKRF+ A
Sbjct: 206 DFKRFKDA 213


>sp|GLYA_METMA|SERINE hydroxymethyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LDFKRFEQ 8
+DFKRF +
Sbjct: 178 IDFKRFRE 185


>sp|CARB_PYRFU|CARBAMOYL phosphate synthase large chain|Pyrococcus furiosus (strain ATCC

Query: 2 DFKRFEQ 8
DFK+FE+
Sbjct: 359 DFKKFEE 365


>sp|CSM4_THEON|CRISPR system Cms protein Csm4|Thermococcus onnurineus (strain NA1)

Query: 1 LDFKRFEQAL 10
LD K FE AL
Sbjct: 102 LDLKNFELAL 111


>sp|PELO_METM6|PROTEIN pelota homolog|Methanococcus maripaludis (strain C6 /

Query: 1 LDFKRFEQA 9
LD+K+ EQA
Sbjct: 168 LDYKQNEQA 176


>sp|PELO_METM5|PROTEIN pelota homolog|Methanococcus maripaludis (strain C5 /

Query: 1 LDFKRFEQA 9
LD+K+ EQA
Sbjct: 168 LDYKQNEQA 176


>sp|PELO_METM7|PROTEIN pelota homolog|Methanococcus maripaludis (strain C7 /

Query: 1 LDFKRFEQA 9
LD+K+ EQA
Sbjct: 168 LDYKQNEQA 176


>sp|PELO_METMP|PROTEIN pelota homolog|Methanococcus maripaludis (strain DSM 14266

Query: 1 LDFKRFEQA 9
LD+K+ EQA
Sbjct: 168 LDYKQNEQA 176




47|SequenceR|240|231|EWPSNLDFKR

>sp|TRUD_PICTO|PROBABLE tRNA pseudouridine synthase D|Picrophilus torridus (strain ATCC

Query: 1 EWPSNLDFKR 10
E+P NL F+R
Sbjct: 225 EYPGNLTFER 234


>sp|SRP19_METBU|SIGNAL recognition particle 19 kDa|Methanococcoides burtonii (strain DSM

Query: 2 WPSNLDFKR 10
WP+NLD R
Sbjct: 10 WPANLDKSR 18


>sp|Y409_METJA|UNCHARACTERIZED protein MJ0409|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WPSNLDFK 9
+PSNLD+K
Sbjct: 18 YPSNLDYK 25


>sp|SYR_METB6|ARGININE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 EWPSNLDFKR 10
+W LDF+R
Sbjct: 432 DWKQALDFER 441


>sp|SYR_METLZ|ARGININE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 EWPSNLDFKR 10
+W LDF+R
Sbjct: 429 DWKEALDFER 438


>sp|Y821_METMA|UPF0292 protein MM_0821|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 EWPSNLDFKR 10
E+ +NL+F+R
Sbjct: 141 EYETNLEFER 150


>sp|SYR_METKA|ARGININE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 EWPSNLDFKR 10
+W LDF+R
Sbjct: 463 DWDEALDFRR 472


>sp|KCY_AERPE|CYTIDYLATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 1 EWPSNLDFKR 10
EW L FKR
Sbjct: 124 EWSQRLRFKR 133


>sp|RS8E_PYRAR|SMALL ribosomal subunit protein eS8|Pyrobaculum arsenaticum (strain DSM

Query: 1 EWPSNLDFKR 10
E P+N DF R
Sbjct: 87 ETPANPDFAR 96


>sp|SYR_ARCFU|ARGININE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EWPSNLDFKR 10
+W LDF+R
Sbjct: 418 DWSKALDFER 427


>sp|Y267_ARCFU|UNCHARACTERIZED protein AF_0267|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EWPSNLDFKR 10
EW +LDF +
Sbjct: 315 EWAESLDFPK 324


>sp|SRP19_METMP|SIGNAL recognition particle 19 kDa|Methanococcus maripaludis (strain DSM

Query: 2 WPSNLDFKR 10
WP+ +D KR
Sbjct: 7 WPAYIDLKR 15


>sp|SRP19_METM5|SIGNAL recognition particle 19 kDa|Methanococcus maripaludis (strain C5

Query: 2 WPSNLDFKR 10
WP+ +D KR
Sbjct: 7 WPAYIDLKR 15


>sp|SYR_METPE|ARGININE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 EWPSNLDFKR 10
+W LDF R
Sbjct: 432 DWKEALDFDR 441


>sp|SRP19_HYPBU|SIGNAL recognition particle 19 kDa|Hyperthermus butylicus (strain DSM

Query: 2 WPSNLD 7
WP+N+D
Sbjct: 13 WPANID 18


>sp|SRP19_METVS|SIGNAL recognition particle 19 kDa|Methanococcus vannielii (strain ATCC

Query: 2 WPSNLDFKR 10
WP+ D KR
Sbjct: 7 WPAYFDLKR 15


>sp|SRP19_METM7|SIGNAL recognition particle 19 kDa|Methanococcus maripaludis (strain C7

Query: 2 WPSNLDFKR 10
WP+ +D KR
Sbjct: 7 WPAYIDIKR 15


>sp|KATG_NATPD|CATALASE-PEROXIDASE pharaonis (strain ATCC 35678

Query: 2 WPSNLDFK 9
WP LDF+
Sbjct: 9 WPEALDFE 16


>sp|HYD1D_PYRFU|SULFHYDROGENASE 1 subunit delta|Pyrococcus furiosus (strain ATCC 43587

Query: 2 WPSNLDF 8
WP ++D+
Sbjct: 155 WPEDIDY 161


>sp|SYR_HALLT|ARGININE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 EWPSNLDFK 9
EW LDF+
Sbjct: 454 EWEDALDFE 462


>sp|MTSA_METBA|METHYLATED-THIOL--COENZYME M methyltransferase|Methanosarcina barkeri

Query: 2 WPSNLD 7
WP NL+
Sbjct: 110 WPDNLE 115


>sp|RLSX_METTH|FUSED uL13/uS9 ribosomal subunit protein|Methanothermobacter

Query: 1 EWPSNLDFK 9
+W S++D K
Sbjct: 237 DWTSDMDLK 245


>sp|SYR_METTP|ARGININE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 EWPSNLDFKR 10
+W + LDF++
Sbjct: 429 DWKTALDFEK 438




48|SequenceR|245|236|YVPFAEWPSN

>sp|Y1185_METJA|UNCHARACTERIZED protein MJ1185|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YVPFAEW 7
YVPF +W
Sbjct: 458 YVPFGDW 464


>sp|G6PI_NATPD|PROBABLE glucose-6-phosphate isomerase|Natronomonas pharaonis (strain ATCC

Query: 3 PFAEW 7
PFAEW
Sbjct: 258 PFAEW 262


>sp|AMT1_ARCFU|AMMONIUM transporter Amt1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 YVPFAEW 7
Y PFA W
Sbjct: 129 YAPFAHW 135


>sp|BACH_HALS4|HALORHODOPSIN sp. (strain arg-4)

Query: 1 YVPFAEWPSN 10
Y A+WP+N
Sbjct: 197 YALLAKWPTN 206


>sp|HIS4_PYRAE|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Pyrobaculum aerophilum (strain

Query: 2 VPFAEWP 8
+PF WP
Sbjct: 100 LPFKNWP 106


>sp|Y661_METTH|PUTATIVE ammonium transporter MTH_661|Methanothermobacter thermautotrophicus

Query: 1 YVPFAEW 7
YVP A W
Sbjct: 141 YVPVAHW 147


>sp|AROE_METTH|SHIKIMATE dehydrogenase (NADP(+))|Methanothermobacter thermautotrophicus

Query: 1 YVPFAEWPSN 10
YVPF P N
Sbjct: 38 YVPFPVKPEN 47


>sp|AROE_METS3|SHIKIMATE dehydrogenase (NADP(+))|Methanobrevibacter smithii (strain ATCC

Query: 1 YVPFAEWPSN 10
YVPF P N
Sbjct: 38 YVPFNVCPEN 47


>sp|Y1355_METJA|UNCHARACTERIZED protein MJ1355|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VPFAEW 7
VP AEW
Sbjct: 362 VPIAEW 367


>sp|CDC6_METMJ|ORC1-TYPE DNA replication protein|Methanoculleus marisnigri (strain ATCC

Query: 1 YVPFAEWPSN 10
++P WP++
Sbjct: 133 HIPMTGWPTD 142


>sp|CDC6_METHJ|ORC1-TYPE DNA replication protein|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 YVPFAEWPSN 10
++P WP++
Sbjct: 133 HIPMTGWPTD 142


>sp|CDC6_METB6|ORC1-TYPE DNA replication protein|Methanoregula boonei (strain DSM 21154

Query: 1 YVPFAEWPSN 10
++P WP++
Sbjct: 133 HIPMTGWPTD 142


>sp|Y663_METTH|PUTATIVE ammonium transporter MTH_663|Methanothermobacter thermautotrophicus

Query: 1 YVPFAEW 7
YVP A W
Sbjct: 149 YVPVAHW 155


>sp|DHQS_KORCO|3-DEHYDROQUINATE synthase|Korarchaeum cryptofilum (strain OPF8)

Query: 2 VPFAEWPS 9
V +EWPS
Sbjct: 49 VEVSEWPS 56


>sp|HDRA_METJA|COB--COM heterodisulfide reductase iron-sulfur subunit|Methanocaldococcus

Query: 1 YVPFAE 6
YVPFA+
Sbjct: 274 YVPFAQ 279


>sp|MAP2_METJA|METHIONINE aminopeptidase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YVPFAE 6
Y+PFAE
Sbjct: 234 YLPFAE 239


>sp|Y746_HALSA|UPF0229 protein VNG_0746C|Halobacterium salinarum (strain ATCC 700922

Query: 3 PFAEW 7
PF+EW
Sbjct: 348 PFSEW 352


>sp|TDXH_METVS|PEROXIREDOXIN vannielii (strain ATCC 35089

Query: 1 YVPFAEWPSN 10
Y A+WP+N
Sbjct: 164 YATPADWPNN 173


>sp|HIS8_METAC|HISTIDINOL-PHOSPHATE aminotransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 VPFAEWPSN 10
+PFA +PS
Sbjct: 294 IPFAVYPSQ 302


>sp|TRUA_METPE|TRNA pseudouridine synthase A|Methanosphaerula palustris (strain ATCC

Query: 4 FAEWP 8
FA+WP
Sbjct: 114 FADWP 118




49|SequenceR|250|241|EPPQRYVPFA

>sp|Y1566_METJA|UNCHARACTERIZED protein MJ1566|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PPQRYV 7
PPQRY+
Sbjct: 146 PPQRYL 151


>sp|URIC_HALVD|URICASE volcanii (strain ATCC 29605

Query: 1 EPPQRYVP 8
E P+RYVP
Sbjct: 215 EDPERYVP 222


>sp|TRM56_THEVO|TRNA (cytidine(56)-2'-O)-methyltransferase|Thermoplasma volcanium

Query: 2 PPQRYVP 8
PP YVP
Sbjct: 272 PPDNYVP 278


>sp|TOP1_PYRFU|DNA topoisomerase 1|Pyrococcus furiosus (strain ATCC 43587

Query: 1 EPPQRYVPFA 10
+PP RY P A
Sbjct: 845 KPPARYSPAA 854


>sp|LHRC_METJA|ATP-DEPENDENT helicase Lhr-Core|Methanocaldococcus jannaschii (strain ATCC

Query: 2 PPQRY 6
PPQRY
Sbjct: 37 PPQRY 41


>sp|FLPA_METHJ|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanospirillum hungatei JF-1

Query: 3 PQRYVPF 9
P+RY+PF
Sbjct: 105 PERYLPF 111


>sp|URIC_HALJB|URICASE jeotgali (strain DSM 18796

Query: 1 EPPQRYVP 8
+ PQRYVP
Sbjct: 213 DEPQRYVP 220


>sp|CDC62_METTH|ORC1-TYPE DNA replication protein 2|Methanothermobacter thermautotrophicus

Query: 1 EPPQRYVPFA 10
+PP+ VPF+
Sbjct: 117 QPPETGVPFS 126


>sp|LHRC2_THEBM|ATP-DEPENDENT helicase Lhr-Core protein 2|Thermococcus barophilus (strain DSM

Query: 2 PPQRY 6
PPQRY
Sbjct: 35 PPQRY 39


>sp|RL2_AERPE|LARGE ribosomal subunit protein uL2|Aeropyrum pernix (strain ATCC

Query: 3 PQRYVPFA 10
P RYVP A
Sbjct: 49 PGRYVPLA 56


>sp|Y1621_ARCFU|UPF0324 membrane protein AF_1621|Archaeoglobus fulgidus (strain ATCC

Query: 4 QRYVPF 9
+RYVPF
Sbjct: 71 ERYVPF 76


>sp|TOP1_PYRAB|DNA topoisomerase 1|Pyrococcus abyssi (strain GE5 /

Query: 1 EPPQRYVPFA 10
+PP RY P A
Sbjct: 472 KPPARYSPAA 481


>sp|TOP1_PYRHO|DNA topoisomerase 1|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 EPPQRYVPFA 10
+PP RY P A
Sbjct: 472 KPPARYSPAA 481


>sp|MTRC_METJA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit C|Methanocaldococcus jannaschii (strain

Query: 3 PQRYVPFA 10
PQ+Y+ +A
Sbjct: 163 PQKYIDYA 170


>sp|KORA_METTH|2-OXOGLUTARATE synthase subunit KorA|Methanothermobacter thermautotrophicus

Query: 2 PPQRYVPFA 10
PP+ ++PF+
Sbjct: 197 PPEEFLPFS 205




50|SequenceR|255|246|ELKLSEPPQR

>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 3 KLSEPPQR 10
KL+EPP+R
Sbjct: 256 KLTEPPER 263


>sp|SYR_METTH|ARGININE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 ELKLSEPP 8
E+KL EPP
Sbjct: 27 EIKLEEPP 34


>sp|HCP_METMA|HYDROXYLAMINE reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 ELKLSEPPQR 10
+ K+S+PP++
Sbjct: 346 QAKMSKPPEQ 355


>sp|Y637_METTH|UPF0235 protein MTH_637|Methanothermobacter thermautotrophicus (strain

Query: 1 ELKLSEPPQR 10
E+K+ PPQ+
Sbjct: 40 EVKIHSPPQK 49


>sp|SYE_SULAC|GLUTAMATE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 ELKLSEPPQR 10
+LKL +P QR
Sbjct: 247 DLKLPDPSQR 256


>sp|RFCL_METM7|REPLICATION factor C large subunit|Methanococcus maripaludis (strain C7 /

Query: 3 KLSEPPQ 9
K+SEPP+
Sbjct: 442 KISEPPK 448




51|SequenceR|264|251|KADPKKDGAELKLS

>sp|LYEL_HALSA|LYCOPENE elongase/hydratase|Halobacterium salinarum (strain ATCC 700922

Query: 1 KADPKKDGAE 10
+ +PKKDG E
Sbjct: 68 ETNPKKDGRE 77


>sp|SYDND_SACS2|ASPARTATE--TRNA(ASP/ASN) ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 DPKKDGAELKLS 14
+PK DG+E+K++
Sbjct: 11 NPKLDGSEVKVA 22


>sp|PYRH_METMJ|URIDYLATE kinase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 ADPKKDGAELK 12
ADPKKD ++
Sbjct: 148 ADPKKDAGAVR 158


>sp|APGM_METVS|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcus vannielii (strain ATCC 35089

Query: 2 ADPKKDGAELK 12
ADPKK+G ++K
Sbjct: 159 ADPKKEGKKVK 169


>sp|APGM_METMP|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcus maripaludis (strain DSM 14266

Query: 2 ADPKKDGAELK 12
ADPKK+G ++K
Sbjct: 159 ADPKKEGKKVK 169


>sp|APGM_METM7|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcus maripaludis (strain C7 /

Query: 2 ADPKKDGAELK 12
ADPKK+G +K
Sbjct: 159 ADPKKEGKRVK 169


>sp|APGM_METM6|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcus maripaludis (strain C6 /

Query: 2 ADPKKDGAELK 12
ADPKK+G ++K
Sbjct: 159 ADPKKEGKKVK 169


>sp|APGM_METM5|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcus maripaludis (strain C5 /

Query: 2 ADPKKDGAELK 12
ADPKK+G +K
Sbjct: 159 ADPKKEGKRVK 169


>sp|SYE_METS5|GLUTAMATE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 1 KADPKKDGAELK 12
KADP KD E++
Sbjct: 514 KADPNKDVEEIR 525


>sp|LYEL_HALVD|LYCOPENE elongase/hydratase|Haloferax volcanii (strain ATCC 29605

Query: 1 KADPKKDGAELK 12
+A+PKKD E +
Sbjct: 94 EANPKKDDREAR 105


>sp|ENDA_METMA|TRNA-SPLICING endonuclease|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 PKKDGAELKL 13
PK DG EL L
Sbjct: 32 PKDDGLELSL 41


>sp|PYRH_METHJ|URIDYLATE kinase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 ADPKKDGA 9
ADP+KD A
Sbjct: 148 ADPRKDPA 155


>sp|DSRB_ARCFU|SULFITE reductase, dissimilatory-type subunit beta|Archaeoglobus fulgidus

Query: 3 DPKKDGAEL 11
DP+ DGA +
Sbjct: 258 DPENDGAAI 266


>sp|PYRH_METLZ|URIDYLATE kinase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 ADPKKDG 8
ADPKKD
Sbjct: 149 ADPKKDA 155


>sp|GLMM_PYRFU|PROBABLE phosphoglucosamine mutase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 KADPKKD 7
KADPKK+
Sbjct: 145 KADPKKE 151


>sp|Y952_ARCFU|UNCHARACTERIZED protein AF_0952|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 PKKDGAELKLS 14
P K G E KLS
Sbjct: 119 PNKKGDEKKLS 129


>sp|PYRH_ARCFU|URIDYLATE kinase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 ADPKKDGAELK 12
ADPK D + +K
Sbjct: 144 ADPKSDTSAVK 154


>sp|GLYA_PICTO|SERINE hydroxymethyltransferase|Picrophilus torridus (strain ATCC 700027

Query: 3 DPKKDGAEL 11
DP ++GAE+
Sbjct: 216 DPLREGAEI 224


>sp|APGM_METPE|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosphaerula palustris (strain ATCC

Query: 3 DPKKDG 8
DPK+DG
Sbjct: 168 DPKEDG 173


>sp|PYRH_PYRFU|URIDYLATE kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 ADPKKD 7
ADPKKD
Sbjct: 148 ADPKKD 153


>sp|GLKA_THEKO|ADP-DEPENDENT glucose/glucosamine kinase|Thermococcus kodakarensis (strain ATCC

Query: 4 PKKDGAELKL 13
PK +G +LKL
Sbjct: 151 PKVEGGKLKL 160




THE END