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1|Sequence|1|10|MAALRALCGF

 ***** No hits found ******


2|Sequence|6|15|ALCGFRGVAA

 ***** No hits found ******


3|Sequence|11|20|RGVAAQVLRP

 ***** No hits found ******


4|Sequence|16|25|QVLRPGAGVR

 ***** No hits found ******


5|Sequence|21|30|GAGVRLPIQP

 ***** No hits found ******


6|Sequence|26|35|LPIQPSRGVR

 ***** No hits found ******


7|Sequence|31|40|SRGVRQWQPD

 ***** No hits found ******


8|Sequence|36|45|QWQPDVEWAQ

 ***** No hits found ******


9|Sequence|41|50|VEWAQQFGGA

 ***** No hits found ******


10|Sequence|46|55|QFGGAVMYPS

 ***** No hits found ******


11|Sequence|51|60|VMYPSKETAH

 ***** No hits found ******


12|Sequence|56|65|KETAHWKPPP

>sp|ILVD_ACIC1|DIHYDROXY-ACID dehydratase|Acidothermus cellulolyticus (strain ATCC 43068

Query: 1   KETAHWKPPP 10
           K  A W+PPP
Sbjct: 524 KRRADWQPPP 533


>sp|GALE_VIBCL|UDP-GLUCOSE 4-epimerase|Vibrio cholerae

Query: 1   KETAHWKPP 9
           KET  WKPP
Sbjct: 300 KETLGWKPP 308


>sp|EXOC_AZOBR|PHOSPHOMANNOMUTASE brasilense

Query: 4   AHWKPP 9
           AHWKPP
Sbjct: 451 AHWKPP 456




13|Sequence|61|70|WKPPPWNDVD

>sp|MOTA_AQUAE|MOTILITY protein A|Aquifex aeolicus (strain VF5)

Query: 1  WKPPPWNDV 9
          WKPP  NDV
Sbjct: 68 WKPPDLNDV 76




14|Sequence|66|75|WNDVDPPKDT

>sp|DIPPS_RUBXD|BIFUNCTIONAL IPC transferase and DIPP|Rubrobacter xylanophilus (strain DSM 9941

Query: 1   WNDVDPPKD 9
           W DVD P+D
Sbjct: 221 WTDVDTPQD 229




15|Sequence|71|80|PPKDTIVKNI

 ***** No hits found ******


16|Sequence|76|85|IVKNITLNFG

>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 2  VKNITLNFG 10
          +KN TLNFG
Sbjct: 4  IKNYTLNFG 12




17|Sequence|81|90|TLNFGPQHPA

>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 11 TLNFGPQHPA 20


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 11 TLNFGPQHPA 20


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 7  TLNFGPQHPA 16


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp.

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 11 TLNFGPQHPA 20


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 11 TLNFGPQHPA 20


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 16 TINFGPQHPA 25


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 16 TLNFGPQHPA 25


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 8  TLNFGPQHPA 17


>sp|NUOD_CLOB8|NADH-QUINONE oxidoreductase subunit D|Clostridium beijerinckii (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLNFGPQHP+
Sbjct: 13 TLNFGPQHPS 22


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 15 TINFGPQHPA 24


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1  TLNFGPQHPA 10
          T NFGPQHPA
Sbjct: 8  TFNFGPQHPA 17


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1  TLNFGPQHPA 10
          T NFGPQHPA
Sbjct: 8  TFNFGPQHPA 17


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv.

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 30 TINFGPQHPA 39


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1  TLNFGPQHPA 10
          T NFGPQHPA
Sbjct: 8  TFNFGPQHPA 17


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1  TLNFGPQHPA 10
          T NFGPQHPA
Sbjct: 8  TFNFGPQHPA 17


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1  TLNFGPQHPA 10
          T NFGPQHPA
Sbjct: 8  TFNFGPQHPA 17


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 9  TINFGPQHPA 18


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1  TLNFGPQHPA 10
          TLNFGPQHP+
Sbjct: 8  TLNFGPQHPS 17


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 26 TMNFGPQHPA 35


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 8  TMNFGPQHPA 17


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 9  TINFGPQHPA 18


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 9  TINFGPQHPA 18


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 9  TINFGPQHPA 18


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 9  TINFGPQHPA 18


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 9  TINFGPQHPA 18


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1  TLNFGPQHPA 10
          TLNFGPQHPA
Sbjct: 10 TLNFGPQHPA 19


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 8  TMNFGPQHPA 17


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 16 TINFGPQHPA 25


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 8  TMNFGPQHPA 17


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 10 TINFGPQHPA 19


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 16 TINFGPQHPA 25


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 10 TINFGPQHPA 19


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1  TLNFGPQHPA 10
          +LNFGPQHPA
Sbjct: 8  SLNFGPQHPA 17


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 13 TINFGPQHPA 22


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1  TLNFGPQHPA 10
          +LNFGPQHPA
Sbjct: 8  SLNFGPQHPA 17


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 23 TINFGPQHPA 32


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 8  TMNFGPQHPA 17


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 16 TINFGPQHPA 25


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 12 TINFGPQHPA 21


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 8  TVNFGPQHPA 17


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 8  TMNFGPQHPA 17


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 16 TINFGPQHPA 25


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 19 TINFGPQHPA 28


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 22 TINFGPQHPA 31


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 10 TINFGPQHPA 19


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 12 TINFGPQHPA 21


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 12 TINFGPQHPA 21


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1  TLNFGPQHPA 10
          +LNFGPQHPA
Sbjct: 8  SLNFGPQHPA 17


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 10 TVNFGPQHPA 19


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 10 TINFGPQHPA 19


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 20 TINFGPQHPA 29


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 2  LNFGPQHPA 10
          LNFGPQHPA
Sbjct: 9  LNFGPQHPA 17


>sp|NUOD_DESPS|NADH-QUINONE oxidoreductase subunit D|Desulfotalea psychrophila (strain LSv54

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 14 TLNLGPQHPA 23


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 20 TINFGPQHPA 29


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 2  LNFGPQHPA 10
          LNFGPQHPA
Sbjct: 10 LNFGPQHPA 18


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 2  LNFGPQHPA 10
          LNFGPQHPA
Sbjct: 9  LNFGPQHPA 17


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+NFGPQHPA
Sbjct: 14 TMNFGPQHPA 23


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1  TLNFGPQHPA 10
          T+NFGPQHP+
Sbjct: 8  TINFGPQHPS 17


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 2  LNFGPQHPA 10
          LNFGPQHPA
Sbjct: 9  LNFGPQHPA 17


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 2  LNFGPQHPA 10
          LNFGPQHPA
Sbjct: 30 LNFGPQHPA 38


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1  TLNFGPQHPA 10
          T+NFGPQHP+
Sbjct: 8  TMNFGPQHPS 17


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1  TLNFGPQHPA 10
          T+NFGPQHP+
Sbjct: 8  TINFGPQHPS 17


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain

Query: 2  LNFGPQHPA 10
          LNFGPQHPA
Sbjct: 11 LNFGPQHPA 19


>sp|NUOD_HELMI|NADH-QUINONE oxidoreductase subunit D|Heliobacterium modesticaldum (strain

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 8  LNFGPQHPS 16


>sp|NUOD_CAMC5|NADH-QUINONE oxidoreductase subunit D|Campylobacter curvus (strain 525.92)

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 26 LNFGPQHPS 34


>sp|NUOD_CAMC1|NADH-QUINONE oxidoreductase subunit D|Campylobacter concisus (strain 13826)

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 26 LNFGPQHPS 34


>sp|NUOD2_ANADE|NADH-QUINONE oxidoreductase subunit D 2|Anaeromyxobacter dehalogenans (strain

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 18 LNFGPQHPS 26


>sp|NUOD1_ANASK|NADH-QUINONE oxidoreductase subunit D 1|Anaeromyxobacter sp. (strain K)

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 18 LNFGPQHPS 26


>sp|NUOD1_ANADF|NADH-QUINONE oxidoreductase subunit D 1|Anaeromyxobacter sp. (strain Fw109-5)

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 18 LNFGPQHPS 26


>sp|NUOD_CAMHC|NADH-QUINONE oxidoreductase subunit D|Campylobacter hominis (strain ATCC

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 25 LNFGPQHPS 33


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain

Query: 2  LNFGPQHPA 10
          LNFGPQHPA
Sbjct: 9  LNFGPQHPA 17


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 2  LNFGPQHPA 10
          LNFGPQHPA
Sbjct: 7  LNFGPQHPA 15


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 7  TLNLGPQHPA 16


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040)

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 21 INFGPQHPA 29


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 7  TLNLGPQHPA 16


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 29 INFGPQHPA 37


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 29 INFGPQHPA 37


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 9  TLNLGPQHPA 18


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 29 INFGPQHPA 37


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 9  TLNLGPQHPA 18


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 22 INFGPQHPA 30


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 20 INFGPQHPA 28


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 9  TLNLGPQHPA 18


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1  TLNFGPQHPA 10
          TLNFGP HPA
Sbjct: 8  TLNFGPVHPA 17


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 20 INFGPQHPA 28


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 9  TLNLGPQHPA 18


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 9  TLNLGPQHPA 18


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1  TLNFGPQHPA 10
          ++NFGPQHPA
Sbjct: 10 SINFGPQHPA 19


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 16 INFGPQHPA 24


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 9  TLNLGPQHPA 18


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC

Query: 1  TLNFGPQHPA 10
          ++NFGPQHPA
Sbjct: 10 SINFGPQHPA 19


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 19 INFGPQHPA 27


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  TLNFGPQHPA 10
          TLNFGP HPA
Sbjct: 8  TLNFGPVHPA 17


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  TLNFGPQHPA 10
          TLNFGP HPA
Sbjct: 8  TLNFGPVHPA 17


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  TLNFGPQHPA 10
          TLNFGP HPA
Sbjct: 8  TLNFGPVHPA 17


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 22 INFGPQHPA 30


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 23 INFGPQHPA 31


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 9  TLNLGPQHPA 18


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 9  TLNLGPQHPA 18


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_SULDN|NADH-QUINONE oxidoreductase subunit D|Sulfurimonas denitrificans (strain ATCC

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 25 LNFGPQHPS 33


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1  TLNFGPQHPA 10
          ++NFGPQHPA
Sbjct: 10 SINFGPQHPA 19


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  TLNFGPQHPA 10
          TLNFGP HPA
Sbjct: 8  TLNFGPVHPA 17


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  TLNFGPQHPA 10
          TLNFGP HPA
Sbjct: 8  TLNFGPVHPA 17


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  TLNFGPQHPA 10
          TLNFGP HPA
Sbjct: 8  TLNFGPVHPA 17


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp.

Query: 1  TLNFGPQHPA 10
          TLNFGP HPA
Sbjct: 8  TLNFGPVHPA 17


>sp|NUOD1_THEYD|NADH-QUINONE oxidoreductase subunit D 1|Thermodesulfovibrio yellowstonii

Query: 1  TLNFGPQHPA 10
          T+N GPQHPA
Sbjct: 12 TVNMGPQHPA 21


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1  TLNFGPQHPA 10
          TLN GPQHPA
Sbjct: 9  TLNIGPQHPA 18


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 23 INFGPQHPA 31


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1  TLNFGPQHPA 10
          TLNFGP HPA
Sbjct: 8  TLNFGPVHPA 17


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 28 INFGPQHPA 36


>sp|NUOD_HELHP|NADH-QUINONE oxidoreductase subunit D|Helicobacter hepaticus (strain ATCC

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 26 LNFGPQHPS 34


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 11 INFGPQHPA 19


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 15 INFGPQHPA 23


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 19 INFGPQHPA 27


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1  TLNFGPQHPA 10
          T+NFGP+HP+
Sbjct: 10 TINFGPEHPS 19


>sp|NUOD_HELPY|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain ATCC 700392

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 26 LNFGPQHPS 34


>sp|NUOD_HELPH|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain HPAG1)

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 26 LNFGPQHPS 34


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 19 INFGPQHPA 27


>sp|NUOD2_OPITP|NADH-QUINONE oxidoreductase subunit D 2|Opitutus terrae (strain DSM 11246

Query: 1  TLNFGPQHPA 10
          T+N GPQHPA
Sbjct: 41 TINLGPQHPA 50


>sp|NUOD_HELPG|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain G27)

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 26 LNFGPQHPS 34


>sp|NUOD_HELPJ|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain J99 /

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 26 LNFGPQHPS 34


>sp|NUOD_HELP2|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain P12)

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 26 LNFGPQHPS 34


>sp|NUOD_HELAH|NADH-QUINONE oxidoreductase subunit D|Helicobacter acinonychis (strain Sheeba)

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 26 LNFGPQHPS 34


>sp|NUOD1_CHLT3|NADH-QUINONE oxidoreductase subunit D 1|Chloroherpeton thalassium (strain ATCC

Query: 2  LNFGPQHPA 10
          LN GPQHPA
Sbjct: 59 LNMGPQHPA 67


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 2  LNFGPQHPA 10
          +NFGPQHPA
Sbjct: 33 INFGPQHPA 41


>sp|NUOD_HELPS|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain Shi470)

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 26 LNFGPQHPS 34


>sp|NUOD_CITBB|NADH-QUINONE oxidoreductase subunit D|Citrifermentans bemidjiense (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLN GPQHP+
Sbjct: 7  TLNMGPQHPS 16


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 2  LNFGPQHPA 10
          LN GPQHPA
Sbjct: 15 LNLGPQHPA 23


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 2  LNFGPQHPA 10
          LN GPQHPA
Sbjct: 15 LNLGPQHPA 23


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 2  LNFGPQHPA 10
          LNFGPQHP+
Sbjct: 35 LNFGPQHPS 43


>sp|NUOD_SULNB|NADH-QUINONE oxidoreductase subunit D|Sulfurovum sp. (strain NBC37-1)

Query: 2  LNFGPQHPA 10
          +NFGPQHP+
Sbjct: 25 INFGPQHPS 33


>sp|NUOD_NITSB|NADH-QUINONE oxidoreductase subunit D|Nitratiruptor sp. (strain SB155-2)

Query: 2  LNFGPQHPA 10
          +NFGPQHP+
Sbjct: 25 VNFGPQHPS 33


>sp|NUOD_WOLSU|NADH-QUINONE oxidoreductase subunit D|Wolinella succinogenes (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHP+
Sbjct: 25 INFGPQHPS 33


>sp|SYFA_BIFLS|PHENYLALANINE--TRNA ligase alpha subunit|Bifidobacterium longum subsp. infantis (strain

Query: 1   TLNFGPQHPA 10
           +LNFGP HPA
Sbjct: 150 SLNFGPDHPA 159


>sp|NDHH_SYNJB|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain

Query: 2  LNFGPQHPA 10
          LNFGP HP+
Sbjct: 11 LNFGPHHPS 19


>sp|NDHH_SYNJA|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain JA-3-3Ab)

Query: 2  LNFGPQHPA 10
          LNFGP HP+
Sbjct: 13 LNFGPHHPS 21


>sp|NUOD_SYNFM|NADH-QUINONE oxidoreductase subunit D|Syntrophobacter fumaroxidans (strain DSM

Query: 1  TLNFGPQHPA 10
          TLN GPQHP+
Sbjct: 15 TLNLGPQHPS 24


>sp|NUOD_SALRD|NADH-QUINONE oxidoreductase subunit D|Salinibacter ruber (strain DSM 13855

Query: 2  LNFGPQHPA 10
          LN GPQHPA
Sbjct: 69 LNIGPQHPA 77


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1  TLNFGPQHPA 10
          T+N GPQHPA
Sbjct: 24 TVNVGPQHPA 33


>sp|SYFA_BIFLO|PHENYLALANINE--TRNA ligase alpha subunit|Bifidobacterium longum (strain NCC 2705)

Query: 1   TLNFGPQHPA 10
           +LNFGP HPA
Sbjct: 150 SLNFGPDHPA 159


>sp|NDHH_SYNR3|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain RCC307)

Query: 2  LNFGPQHPA 10
          LNFGP HP+
Sbjct: 13 LNFGPHHPS 21


>sp|NUOD2_CYTH3|NADH-QUINONE oxidoreductase subunit D 2|Cytophaga hutchinsonii (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLN GP HPA
Sbjct: 8  TLNLGPTHPA 17


>sp|NUOD_GEOUR|NADH-QUINONE oxidoreductase subunit D|Geotalea uraniireducens (strain Rf4)

Query: 1  TLNFGPQHPA 10
          T+N GPQHP+
Sbjct: 8  TINMGPQHPS 17


>sp|SYFA_BIFA0|PHENYLALANINE--TRNA ligase alpha subunit|Bifidobacterium animalis subsp. lactis (strain

Query: 2   LNFGPQHPA 10
           LNFGP HPA
Sbjct: 151 LNFGPDHPA 159


>sp|NUOD_PARUW|NADH-QUINONE oxidoreductase subunit D|Protochlamydia amoebophila (strain

Query: 2  LNFGPQHPA 10
          LN GPQHP+
Sbjct: 21 LNLGPQHPS 29


>sp|NUOD_DESRM|NADH-QUINONE oxidoreductase subunit D|Desulforamulus reducens (strain ATCC

Query: 2  LNFGPQHPA 10
          LN GPQHP+
Sbjct: 10 LNLGPQHPS 18


>sp|SYFA_BIFAA|PHENYLALANINE--TRNA ligase alpha subunit|Bifidobacterium adolescentis (strain ATCC

Query: 2   LNFGPQHPA 10
           LNFGP HPA
Sbjct: 151 LNFGPDHPA 159


>sp|NUOD_SACEN|NADH-QUINONE oxidoreductase subunit D|Saccharopolyspora erythraea (strain ATCC

Query: 2  LNFGPQHPA 10
          +NFGPQHP+
Sbjct: 52 INFGPQHPS 60


>sp|NUOCD_PHOV8|NADH-QUINONE oxidoreductase subunit C/D|Phocaeicola vulgatus (strain ATCC 8482

Query: 2   LNFGPQHPA 10
           +N GPQHPA
Sbjct: 163 INIGPQHPA 171


>sp|NUOD_AMOA5|NADH-QUINONE oxidoreductase subunit D|Amoebophilus asiaticus (strain 5a2)

Query: 2  LNFGPQHPA 10
          +N GPQHPA
Sbjct: 32 INIGPQHPA 40


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 2  LNFGPQHPA 10
          +N GPQHPA
Sbjct: 28 MNLGPQHPA 36


>sp|NUOD_PARS2|NADH-QUINONE oxidoreductase subunit D|Parafrankia sp. (strain EAN1pec)

Query: 1  TLNFGPQHPA 10
          T+N GPQHP+
Sbjct: 57 TVNMGPQHPS 66


>sp|NUOD_GEOSL|NADH-QUINONE oxidoreductase subunit D|Geobacter sulfurreducens (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+N GPQHP+
Sbjct: 8  TVNMGPQHPS 17


>sp|NUOD_TRIL1|NADH-QUINONE oxidoreductase subunit D|Trichlorobacter lovleyi (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+N GPQHP+
Sbjct: 8  TINMGPQHPS 17


>sp|NUOD_GEOMG|NADH-QUINONE oxidoreductase subunit D|Geobacter metallireducens (strain ATCC

Query: 1  TLNFGPQHPA 10
          T+N GPQHP+
Sbjct: 8  TVNMGPQHPS 17


>sp|NUOD_CHLPB|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain BS1)

Query: 2  LNFGPQHPA 10
          LN GPQHP+
Sbjct: 35 LNMGPQHPS 43


>sp|NUOD2_SOLUE|NADH-QUINONE oxidoreductase subunit D 2|Solibacter usitatus (strain Ellin6076)

Query: 2  LNFGPQHPA 10
          LN GPQHP+
Sbjct: 14 LNMGPQHPS 22


>sp|NUOD_AKKM8|NADH-QUINONE oxidoreductase subunit D|Akkermansia muciniphila (strain ATCC

Query: 1  TLNFGPQHPA 10
          TLN GP HPA
Sbjct: 32 TLNVGPSHPA 41


>sp|NUOD1_KORVE|NADH-QUINONE oxidoreductase subunit D 1|Koribacter versatilis (strain

Query: 2  LNFGPQHPA 10
          LN GPQHP+
Sbjct: 25 LNMGPQHPS 33


>sp|NUOCD_BUCCC|NADH-QUINONE oxidoreductase subunit C/D|Buchnera aphidicola subsp. Cinara cedri

Query: 2   LNFGPQHPA 10
           LNFGP HP+
Sbjct: 196 LNFGPNHPS 204


>sp|NUOD2_SORC5|NADH-QUINONE oxidoreductase subunit D 2|Sorangium cellulosum (strain So ce56)

Query: 1  TLNFGPQHPA 10
          TLN GP HP+
Sbjct: 24 TLNMGPHHPS 33


>sp|NUOD2_SALAI|NADH-QUINONE oxidoreductase subunit D 2|Salinispora arenicola (strain CNS-205)

Query: 2  LNFGPQHPA 10
          LN GPQHP+
Sbjct: 27 LNIGPQHPS 35


>sp|NUOD_DEHMC|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain CBDB1)

Query: 2  LNFGPQHPA 10
          LN GPQHP+
Sbjct: 10 LNIGPQHPS 18


>sp|NUOD_DEHMB|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 2  LNFGPQHPA 10
          LN GPQHP+
Sbjct: 10 LNIGPQHPS 18


>sp|NUOCD_BACTN|NADH-QUINONE oxidoreductase subunit C/D|Bacteroides thetaiotaomicron (strain

Query: 2   LNFGPQHPA 10
           +N GPQHPA
Sbjct: 174 VNIGPQHPA 182


>sp|NUOCD_BACFR|NADH-QUINONE oxidoreductase subunit C/D|Bacteroides fragilis (strain YCH46)

Query: 2   LNFGPQHPA 10
           +N GPQHPA
Sbjct: 174 VNIGPQHPA 182




18|Sequence|86|95|PQHPAAHGVL

>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 14 PQHPAAHGVL 23


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 20 PQHPAAHGVL 29


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 14 PQHPAAHGVL 23


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 14 PQHPAAHGVL 23


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 14 PQHPAAHGVL 23


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 21 PQHPAAHGVL 30


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 14 PQHPAAHGVL 23


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 25 PQHPAAHGVL 34


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 20 PQHPAAHGVL 29


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv.

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 34 PQHPAAHGVL 43


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 14 PQHPAAHGVL 23


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 14 PQHPAAHGVL 23


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 33 PQHPAAHGVL 42


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp.

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 24 PQHPAAHGVL 33


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 26 PQHPAAHGVL 35


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 32 PQHPAAHGVL 41


>sp|NUOD1_THEYD|NADH-QUINONE oxidoreductase subunit D 1|Thermodesulfovibrio yellowstonii

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 17 PQHPATHGVL 26


>sp|NUOCD_PHOV8|NADH-QUINONE oxidoreductase subunit C/D|Phocaeicola vulgatus (strain ATCC 8482

Query: 1   PQHPAAHGVL 10
           PQHPA HGVL
Sbjct: 167 PQHPATHGVL 176


>sp|NUOD_DESPS|NADH-QUINONE oxidoreductase subunit D|Desulfotalea psychrophila (strain LSv54

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 19 PQHPATHGVL 28


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 24 PQHPAAHGVL 33


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 33 PQHPAAHGVL 42


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 12 PQHPAAHGVL 21


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD2_OPITP|NADH-QUINONE oxidoreductase subunit D 2|Opitutus terrae (strain DSM 11246

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 46 PQHPAAHGVL 55


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 26 PQHPAAHGVL 35


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGV+
Sbjct: 16 PQHPAAHGVM 25


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGV+
Sbjct: 16 PQHPAAHGVM 25


>sp|NUOD1_CHLT3|NADH-QUINONE oxidoreductase subunit D 1|Chloroherpeton thalassium (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 63 PQHPATHGVL 72


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 28 PQHPAAHGVL 37


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 27 PQHPAAHGVL 36


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 27 PQHPAAHGVL 36


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 19 PQHPAAHGVL 28


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 31 PQHPAAHGVL 40


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 27 PQHPAAHGVL 36


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 19 PQHPAAHGVL 28


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 37 PQHPAAHGVL 46


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 32 PQHPAAHGVL 41


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 25 PQHPAAHGVL 34


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_AMOA5|NADH-QUINONE oxidoreductase subunit D|Amoebophilus asiaticus (strain 5a2)

Query: 1  PQHPAAHGVL 10
          PQHPA HG+L
Sbjct: 36 PQHPATHGIL 45


>sp|NUOCD_BACTN|NADH-QUINONE oxidoreductase subunit C/D|Bacteroides thetaiotaomicron (strain

Query: 1   PQHPAAHGVL 10
           PQHPA HGV+
Sbjct: 178 PQHPATHGVM 187


>sp|NUOCD_BACFR|NADH-QUINONE oxidoreductase subunit C/D|Bacteroides fragilis (strain YCH46)

Query: 1   PQHPAAHGVL 10
           PQHPA HGV+
Sbjct: 178 PQHPATHGVM 187


>sp|NUOCD_BACFN|NADH-QUINONE oxidoreductase subunit C/D|Bacteroides fragilis (strain ATCC 25285

Query: 1   PQHPAAHGVL 10
           PQHPA HGV+
Sbjct: 178 PQHPATHGVM 187


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 25 PQHPAAHGVL 34


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGV+
Sbjct: 16 PQHPAAHGVM 25


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGV+
Sbjct: 16 PQHPAAHGVM 25


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1  PQHPAAHGVL 10
          PQHP+AHGVL
Sbjct: 13 PQHPSAHGVL 22


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1  PQHPAAHGVL 10
          PQHP+AHGVL
Sbjct: 13 PQHPSAHGVL 22


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGV+
Sbjct: 18 PQHPAAHGVM 27


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 19 PQHPATHGVL 28


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 12 PQHPATHGVL 21


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 19 PQHPATHGVL 28


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1  PQHPAAHGVL 10
          PQHPAAHG+L
Sbjct: 33 PQHPAAHGLL 42


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 12 PQHPATHGVL 21


>sp|NUOD_CHLPB|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain BS1)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 39 PQHPSTHGVL 48


>sp|NUOD_CHLTE|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum tepidum (strain ATCC 49652

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 39 PQHPSTHGVL 48


>sp|NUOD_CHLL2|NADH-QUINONE oxidoreductase subunit D|Chlorobium limicola (strain DSM 245

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 34 PQHPSTHGVL 43


>sp|NUOD_PELPB|NADH-QUINONE oxidoreductase subunit D|Pelodictyon phaeoclathratiforme (strain

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 39 PQHPSTHGVL 48


>sp|NUOD_CHLP8|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum parvum (strain DSM 263

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 39 PQHPSTHGVL 48


>sp|NUOD_CHLCH|NADH-QUINONE oxidoreductase subunit D|Chlorobium chlorochromatii (strain CaD3)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 39 PQHPSTHGVL 48


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 11 PQHPAAHGVL 20


>sp|NUOD_SALRD|NADH-QUINONE oxidoreductase subunit D|Salinibacter ruber (strain DSM 13855

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 73 PQHPATHGVL 82


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGV+
Sbjct: 21 PQHPAAHGVM 30


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 14 PQHPATHGVL 23


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1  PQHPAAHGVL 10
          PQHP+AHGVL
Sbjct: 13 PQHPSAHGVL 22


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1  PQHPAAHGVL 10
          PQHP+AHGVL
Sbjct: 13 PQHPSAHGVL 22


>sp|NUOD1_CYTH3|NADH-QUINONE oxidoreductase subunit D 1|Cytophaga hutchinsonii (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 25 PQHPSTHGVL 34


>sp|NUOD_CHLL3|NADH-QUINONE oxidoreductase subunit D|Chlorobium luteolum (strain DSM 273

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 34 PQHPSTHGVL 43


>sp|NUOD2_SOLUE|NADH-QUINONE oxidoreductase subunit D 2|Solibacter usitatus (strain Ellin6076)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 18 PQHPSTHGVL 27


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 14 PQHPATHGVL 23


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 14 PQHPATHGVL 23


>sp|NUOD_CHLPD|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain DSM

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 39 PQHPSTHGVL 48


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NDHH_ACAM1|NAD(P)H-QUINONE oxidoreductase subunit H|Acaryochloris marina (strain MBIC 11017)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 17 PQHPSMHGVL 26


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_HELMI|NADH-QUINONE oxidoreductase subunit D|Heliobacterium modesticaldum (strain

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 12 PQHPSTHGVL 21


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD1_SOLUE|NADH-QUINONE oxidoreductase subunit D 1|Solibacter usitatus (strain Ellin6076)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 32 PQHPSTHGVL 41


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 23 PQHPAAHGVL 32


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 14 PQHPATHGVL 23


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 14 PQHPATHGVL 23


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 14 PQHPATHGVL 23


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 14 PQHPATHGVL 23


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 21 PQHPAAHGVL 30


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 17 PQHPAAHGVL 26


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 35 PQHPAAHGVL 44


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 17 PQHPAAHGVL 26


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 24 PQHPAAHGVL 33


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 13 PQHPAAHGVL 22


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 21 PQHPAAHGVL 30


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 23 PQHPAAHGVL 32


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 14 PQHPATHGVL 23


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 21 PQHPAAHGVL 30


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 17 PQHPAAHGVL 26


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 15 PQHPAAHGVL 24


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 23 PQHPAAHGVL 32


>sp|NUOD2_RHIEC|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain ATCC 51251

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 26 PQHPSTHGVL 35


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHPAAHGVL
Sbjct: 21 PQHPAAHGVL 30


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1  PQHPAAHGVL 10
          PQHPA HGVL
Sbjct: 14 PQHPATHGVL 23


>sp|NUOD2_RHIE6|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain CIAT 652)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 26 PQHPSTHGVL 35


>sp|NUOD_CHLPM|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeovibrioides (strain DSM

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 39 PQHPSTHGVL 48


>sp|NUOD2_SYMTH|NADH-QUINONE oxidoreductase subunit D 2|Symbiobacterium thermophilum (strain

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 15 PQHPSTHGVL 24


>sp|NUOD_PARUW|NADH-QUINONE oxidoreductase subunit D|Protochlamydia amoebophila (strain

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 25 PQHPSTHGVL 34


>sp|NUOD1_KORVE|NADH-QUINONE oxidoreductase subunit D 1|Koribacter versatilis (strain

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 29 PQHPSTHGVL 38


>sp|NUOD_PROA2|NADH-QUINONE oxidoreductase subunit D|Prosthecochloris aestuarii (strain DSM

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 39 PQHPSTHGVL 48


>sp|NUOD_CAMC5|NADH-QUINONE oxidoreductase subunit D|Campylobacter curvus (strain 525.92)

Query: 1  PQHPAAHGVL 10
          PQHP+AHG L
Sbjct: 30 PQHPSAHGQL 39


>sp|NUOD2_RHIME|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium meliloti (strain 1021)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 26 PQHPSTHGVL 35


>sp|NUOD_RHOJR|NADH-QUINONE oxidoreductase subunit D|Rhodococcus jostii (strain RHA1)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 43 PQHPSTHGVL 52


>sp|NUOD2_SALTO|NADH-QUINONE oxidoreductase subunit D 2|Salinispora tropica (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 34 PQHPSTHGVL 43


>sp|NUOD2_SINMW|NADH-QUINONE oxidoreductase subunit D 2|Sinorhizobium medicae (strain WSM419)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 26 PQHPSTHGVL 35


>sp|NUOD2_SALAI|NADH-QUINONE oxidoreductase subunit D 2|Salinispora arenicola (strain CNS-205)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 31 PQHPSTHGVL 40


>sp|NUOD1_ANADF|NADH-QUINONE oxidoreductase subunit D 1|Anaeromyxobacter sp. (strain Fw109-5)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGV+
Sbjct: 22 PQHPSTHGVI 31


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1  PQHPAAHGVL 10
          P HPAAHGVL
Sbjct: 13 PVHPAAHGVL 22


>sp|NUOD2_KORVE|NADH-QUINONE oxidoreductase subunit D 2|Koribacter versatilis (strain

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 24 PQHPSTHGVL 33


>sp|NUOD2_CHLT3|NADH-QUINONE oxidoreductase subunit D 2|Chloroherpeton thalassium (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 38 PQHPSTHGVL 47


>sp|NUOD_CAMC1|NADH-QUINONE oxidoreductase subunit D|Campylobacter concisus (strain 13826)

Query: 1  PQHPAAHGVL 10
          PQHP+AHG L
Sbjct: 30 PQHPSAHGQL 39


>sp|NUOD1_STRCO|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces coelicolor (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 26 PQHPSTHGVL 35


>sp|NUOD_NOCSJ|NADH-QUINONE oxidoreductase subunit D|Nocardioides sp. (strain ATCC BAA-499

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 48 PQHPSTHGVL 57


>sp|NUOD_CAMHC|NADH-QUINONE oxidoreductase subunit D|Campylobacter hominis (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+AHG L
Sbjct: 29 PQHPSAHGQL 38


>sp|NUOD_AKKM8|NADH-QUINONE oxidoreductase subunit D|Akkermansia muciniphila (strain ATCC

Query: 1  PQHPAAHGVL 10
          P HPA HGVL
Sbjct: 37 PSHPATHGVL 46


>sp|NUOD_SYNFM|NADH-QUINONE oxidoreductase subunit D|Syntrophobacter fumaroxidans (strain DSM

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 20 PQHPSTHGVL 29


>sp|NUOD_GEOUR|NADH-QUINONE oxidoreductase subunit D|Geotalea uraniireducens (strain Rf4)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 13 PQHPSTHGVL 22


>sp|NUOD1_ANASK|NADH-QUINONE oxidoreductase subunit D 1|Anaeromyxobacter sp. (strain K)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGV+
Sbjct: 22 PQHPSTHGVI 31


>sp|NUOD_MYCGI|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium gilvum (strain

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 53 PQHPSTHGVL 62


>sp|NUOD2_ANADE|NADH-QUINONE oxidoreductase subunit D 2|Anaeromyxobacter dehalogenans (strain

Query: 1  PQHPAAHGVL 10
          PQHP+ HGV+
Sbjct: 22 PQHPSTHGVI 31


>sp|NUOD_CAMJJ|NADH-QUINONE oxidoreductase subunit D|Campylobacter jejuni subsp. jejuni

Query: 1  PQHPAAHGVL 10
          PQHP+AHG L
Sbjct: 29 PQHPSAHGNL 38


>sp|NUOD_TRIL1|NADH-QUINONE oxidoreductase subunit D|Trichlorobacter lovleyi (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 13 PQHPSTHGVL 22


>sp|NUOD_SULDN|NADH-QUINONE oxidoreductase subunit D|Sulfurimonas denitrificans (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+AHG L
Sbjct: 29 PQHPSAHGQL 38


>sp|NUOD_CAMJR|NADH-QUINONE oxidoreductase subunit D|Campylobacter jejuni (strain RM1221)

Query: 1  PQHPAAHGVL 10
          PQHP+AHG L
Sbjct: 29 PQHPSAHGNL 38


>sp|NUOD_CAMJE|NADH-QUINONE oxidoreductase subunit D|Campylobacter jejuni subsp. jejuni

Query: 1  PQHPAAHGVL 10
          PQHP+AHG L
Sbjct: 29 PQHPSAHGNL 38


>sp|NUOD1_SALAI|NADH-QUINONE oxidoreductase subunit D 1|Salinispora arenicola (strain CNS-205)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 46 PQHPSTHGVL 55


>sp|NUOD_SACEN|NADH-QUINONE oxidoreductase subunit D|Saccharopolyspora erythraea (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+AHGVL
Sbjct: 56 PQHPSAHGVL 65


>sp|NUOD_GEOSL|NADH-QUINONE oxidoreductase subunit D|Geobacter sulfurreducens (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 13 PQHPSTHGVL 22


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  PQHPAAHGVL 10
          P HPAAHGVL
Sbjct: 13 PVHPAAHGVL 22


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  PQHPAAHGVL 10
          P HPAAHGVL
Sbjct: 13 PVHPAAHGVL 22


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  PQHPAAHGVL 10
          P HPAAHGVL
Sbjct: 13 PVHPAAHGVL 22


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  PQHPAAHGVL 10
          P HPAAHGVL
Sbjct: 13 PVHPAAHGVL 22


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  PQHPAAHGVL 10
          P HPAAHGVL
Sbjct: 13 PVHPAAHGVL 22


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii

Query: 1  PQHPAAHGVL 10
          P HPA HGVL
Sbjct: 20 PHHPATHGVL 29


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+ HGVL
Sbjct: 48 PQHPSTHGVL 57


>sp|NUOD_DEHMC|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain CBDB1)

Query: 1  PQHPAAHGVL 10
          PQHP+ HGV 
Sbjct: 14 PQHPSTHGVF 23


>sp|NUOD_DEHMB|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+ HGV 
Sbjct: 14 PQHPSTHGVF 23


>sp|NUOD_DEHM1|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1  PQHPAAHGVL 10
          PQHP+ HGV 
Sbjct: 14 PQHPSTHGVF 23




19|Sequence|91|100|AHGVLRLVME

>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1  AHGVLRLVME 10
          AHGVLRLVME
Sbjct: 18 AHGVLRLVME 27


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1  AHGVLRLVME 10
          AHGVLRLVME
Sbjct: 18 AHGVLRLVME 27


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 24 AHGVLRLVLE 33


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 44 AHGVLRLVLE 53


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 19 AHGVLRLILE 28


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM

Query: 1  AHGVLRLVME 10
          AHGVLR+VME
Sbjct: 32 AHGVLRMVME 41


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1  AHGVLRLVME 10
          AHGVLR+VME
Sbjct: 30 AHGVLRMVME 39


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1  AHGVLRLVME 10
          AHGVLR+VME
Sbjct: 33 AHGVLRMVME 42


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGV+RLV+E
Sbjct: 21 AHGVMRLVLE 30


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1  AHGVLRLVME 10
          AHGV+RLV+E
Sbjct: 21 AHGVMRLVLE 30


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain

Query: 1  AHGVLRLVME 10
          AHGVLR++ME
Sbjct: 30 AHGVLRMIME 39


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1  AHGVLRLVME 10
          AHGVLR+V+E
Sbjct: 38 AHGVLRMVLE 47


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 42 AHGVLRLVLE 51


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1  AHGVLRLVME 10
          AHGV+RLV+E
Sbjct: 21 AHGVMRLVLE 30


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1  AHGVLRLVME 10
          AHGV+RL++E
Sbjct: 23 AHGVMRLILE 32


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain

Query: 1  AHGVLRLVME 10
          AHGV+RLV+E
Sbjct: 21 AHGVMRLVLE 30


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 24 AHGVLRLVLE 33


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp.

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 37 AHGVLRLVLE 46


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 30 AHGVLRLVLE 39


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 28 AHGVLRLVLE 37


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 26 AHGVLRLVLE 35


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 25 AHGVLRLVLE 34


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 39 AHGVLRLVLE 48


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 29 AHGVLRLVLE 38


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 29 AHGVLRLVLE 38


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 37 AHGVLRLVLE 46


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 28 AHGVLRLVLE 37


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 40 AHGVLRLVLE 49


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 29 AHGVLRLVLE 38


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 22 AHGVLRLVLE 31


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 32 AHGVLRLVLE 41


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 26 AHGVLRLVLE 35


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 31 AHGVLRLVLE 40


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 31 AHGVLRLVLE 40


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 22 AHGVLRLVLE 31


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 18 AHGVLRLVLE 27


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 26 AHGVLRLVLE 35


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 26 AHGVLRLVLE 35


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 26 AHGVLRLVLE 35


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 22 AHGVLRLVLE 31


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1  AHGVLRLVME 10
          AHGVLRL+M+
Sbjct: 16 AHGVLRLIMQ 25


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain

Query: 1  AHGVLRLVME 10
          AHGVLRLV+E
Sbjct: 20 AHGVLRLVLE 29


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv.

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 20 AHGVLRLILE 29


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp.

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1  AHGVLRLVME 10
          AHGV+RL++E
Sbjct: 26 AHGVMRLILE 35


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLIVE 27


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLILE 27


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 25 AHGVLRLLLE 34


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 36 AHGVLRLILE 45


>sp|NUOD_AKKM8|NADH-QUINONE oxidoreductase subunit D|Akkermansia muciniphila (strain ATCC

Query: 2  HGVLRLVME 10
          HGVLRLV+E
Sbjct: 43 HGVLRLVLE 51


>sp|NUOD_SACEN|NADH-QUINONE oxidoreductase subunit D|Saccharopolyspora erythraea (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLRLV E
Sbjct: 61 AHGVLRLVFE 70


>sp|NUOD1_THEYD|NADH-QUINONE oxidoreductase subunit D 1|Thermodesulfovibrio yellowstonii

Query: 2  HGVLRLVME 10
          HGVLRLV+E
Sbjct: 23 HGVLRLVLE 31


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1  AHGVLRLVME 10
           HGVLRL+ME
Sbjct: 34 THGVLRLIME 43


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 25 HGVLRLILE 33


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1  AHGVLRLVME 10
          AHGVLR+V+E
Sbjct: 20 AHGVLRMVLE 29


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1  AHGVLRLVME 10
          AHGVLR+V+E
Sbjct: 20 AHGVLRMVLE 29


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLR+V+E
Sbjct: 18 AHGVLRMVLE 27


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLR+V+E
Sbjct: 20 AHGVLRMVLE 29


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd

Query: 1  AHGVLRLVME 10
          AHGVLR+V+E
Sbjct: 38 AHGVLRMVLE 47


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 25 HGVLRLILE 33


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1  AHGVLRLVME 10
          AHGVLR+V+E
Sbjct: 20 AHGVLRMVLE 29


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1  AHGVLRLVME 10
          AHGVLR+V+E
Sbjct: 32 AHGVLRMVLE 41


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLIVE 27


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLIVE 27


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLIVE 27


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1  AHGVLRLVME 10
          AHGVLRL++E
Sbjct: 18 AHGVLRLIVE 27


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLR+V+E
Sbjct: 28 AHGVLRMVLE 37


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 18 HGVLRLILE 26


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 18 HGVLRLILE 26


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 20 HGVLRLILE 28


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 20 HGVLRLILE 28


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 20 HGVLRLILE 28


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 20 HGVLRLILE 28


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 20 HGVLRLILE 28


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 20 HGVLRLILE 28


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 20 HGVLRLILE 28


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 20 HGVLRLILE 28


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 2  HGVLRLVME 10
          HGVLRL++E
Sbjct: 20 HGVLRLILE 28


>sp|NUOD1_SOLUE|NADH-QUINONE oxidoreductase subunit D 1|Solibacter usitatus (strain Ellin6076)

Query: 1  AHGVLRLVME 10
           HGVLRL+ME
Sbjct: 37 THGVLRLLME 46


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B

Query: 1  AHGVLRLVME 10
          AHGVLR+++E
Sbjct: 19 AHGVLRMILE 28


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1  AHGVLRLVME 10
          AHGVLR+++E
Sbjct: 19 AHGVLRMILE 28


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C

Query: 1  AHGVLRLVME 10
          AHGVLR+++E
Sbjct: 19 AHGVLRMILE 28


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1  AHGVLRLVME 10
          AHGVLR+++E
Sbjct: 19 AHGVLRMILE 28


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1  AHGVLRLVME 10
          AHGVLR+++E
Sbjct: 19 AHGVLRMILE 28


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC

Query: 1  AHGVLRLVME 10
          AHGVLR+++E
Sbjct: 19 AHGVLRMILE 28


>sp|NUOD2_CHLAA|NADH-QUINONE oxidoreductase subunit D 2|Chloroflexus aurantiacus (strain ATCC

Query: 1  AHGVLRLVME 10
           HGVLRLV+E
Sbjct: 36 THGVLRLVLE 45


>sp|NUOD2_RHIE6|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain CIAT 652)

Query: 1  AHGVLRLVME 10
           HGVLRLV+E
Sbjct: 31 THGVLRLVLE 40


>sp|NUOD2_RHIEC|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain ATCC 51251

Query: 1  AHGVLRLVME 10
           HGVLRLV+E
Sbjct: 31 THGVLRLVLE 40


>sp|NUOD_FRAAA|NADH-QUINONE oxidoreductase subunit D|Frankia alni (strain DSM 45986

Query: 1  AHGVLRLVME 10
           HGVLRLV+E
Sbjct: 80 THGVLRLVLE 89


>sp|NUOD_PARS2|NADH-QUINONE oxidoreductase subunit D|Parafrankia sp. (strain EAN1pec)

Query: 1  AHGVLRLVME 10
           HGVLRLV+E
Sbjct: 67 THGVLRLVLE 76


>sp|NUOD_FRACC|NADH-QUINONE oxidoreductase subunit D|Frankia casuarinae (strain DSM 45818

Query: 1   AHGVLRLVME 10
            HGVLRLV+E
Sbjct: 92  THGVLRLVLE 101


>sp|NUOD_ACIC1|NADH-QUINONE oxidoreductase subunit D|Acidothermus cellulolyticus (strain ATCC

Query: 1  AHGVLRLVME 10
           HGVLRLV+E
Sbjct: 50 THGVLRLVLE 59


>sp|NUOD_SULNB|NADH-QUINONE oxidoreductase subunit D|Sulfurovum sp. (strain NBC37-1)

Query: 1  AHGVLRLVME 10
          AHG LRLV+E
Sbjct: 34 AHGQLRLVLE 43


>sp|NUOD1_SALAI|NADH-QUINONE oxidoreductase subunit D 1|Salinispora arenicola (strain CNS-205)

Query: 1  AHGVLRLVME 10
           HGVLRLV+E
Sbjct: 51 THGVLRLVLE 60


>sp|NUOD1_SALTO|NADH-QUINONE oxidoreductase subunit D 1|Salinispora tropica (strain ATCC

Query: 1  AHGVLRLVME 10
           HGVLRLV+E
Sbjct: 51 THGVLRLVLE 60




20|Sequence|96|105|RLVMELSGEM

>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1  RLVMELSGEM 10
          RLV+ELSGE+
Sbjct: 25 RLVLELSGEV 34




21|Sequence|101|110|LSGEMVRKCD

 ***** No hits found ******


22|Sequence|106|115|VRKCDPHIGL

>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040)

Query: 1  VRKCDPHIGL 10
          V +CDPHIGL
Sbjct: 45 VERCDPHIGL 54


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1  VRKCDPHIGL 10
          V +CDPHIGL
Sbjct: 47 VERCDPHIGL 56


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  VRKCDPHIGL 10
          V +CDPHIGL
Sbjct: 46 VERCDPHIGL 55


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  VRKCDPHIGL 10
          V +CDPHIGL
Sbjct: 44 VERCDPHIGL 53


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  VRKCDPHIGL 10
          V +CDPHIGL
Sbjct: 44 VERCDPHIGL 53


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1  VRKCDPHIGL 10
          V +CDPHIGL
Sbjct: 46 VERCDPHIGL 55


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1  VRKCDPHIGL 10
          V +CDPHIGL
Sbjct: 47 VERCDPHIGL 56


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1  VRKCDPHIGL 10
          VR+ DPHIGL
Sbjct: 33 VRRADPHIGL 42


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1  VRKCDPHIGL 10
          VR+ DPHIGL
Sbjct: 33 VRRADPHIGL 42


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 3  KCDPHIGL 10
          +CDPHIGL
Sbjct: 56 RCDPHIGL 63


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1  VRKCDPHIGL 10
          +R+ DPHIGL
Sbjct: 33 IRRADPHIGL 42


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1  VRKCDPHIGL 10
          +R+ DPHIGL
Sbjct: 33 IRRADPHIGL 42


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1  VRKCDPHIGL 10
          VR+ DPHIGL
Sbjct: 35 VRRVDPHIGL 44


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1  VRKCDPHIGL 10
          V++ DPHIGL
Sbjct: 33 VQRADPHIGL 42


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1  VRKCDPHIGL 10
          V++ DPHIGL
Sbjct: 33 VQRADPHIGL 42


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1  VRKCDPHIGL 10
          V K DPHIGL
Sbjct: 34 VEKADPHIGL 43


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1  VRKCDPHIGL 10
          V++ DPHIGL
Sbjct: 33 VQRADPHIGL 42


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1  VRKCDPHIGL 10
          V++ DPHIGL
Sbjct: 33 VQRADPHIGL 42


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1  VRKCDPHIGL 10
          V++ DPHIGL
Sbjct: 33 VQRADPHIGL 42


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain

Query: 1  VRKCDPHIGL 10
          V++ DPHIGL
Sbjct: 33 VQRADPHIGL 42


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC

Query: 1  VRKCDPHIGL 10
          V++ DPH+GL
Sbjct: 39 VQRADPHVGL 48


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 39 VERADPHIGL 48


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 39 VERADPHIGL 48


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 53 VERADPHIGL 62


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1  VRKCDPHIGL 10
          + + DPHIGL
Sbjct: 33 IERADPHIGL 42


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 53 VERADPHIGL 62


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 33 VERADPHIGL 42


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 41 VERVDPHIGL 50


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRADPHIGL 42


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1  VRKCDPHIGL 10
          + + DPHIGL
Sbjct: 33 IERADPHIGL 42


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 49 VTRADPHIGL 58


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 53 VERADPHIGL 62


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1  VRKCDPHIGL 10
          + + DPHIGL
Sbjct: 33 IERADPHIGL 42


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRIDPHIGL 42


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRIDPHIGL 42


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERADPHIGL 44


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 43 VERADPHIGL 52


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRIDPHIGL 42


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRIDPHIGL 42


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 40 VERVDPHIGL 49


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1  VRKCDPHIGL 10
          +++ DPHIGL
Sbjct: 33 IQRIDPHIGL 42


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 41 VERVDPHIGL 50


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1  VRKCDPHIGL 10
          V + DPH+GL
Sbjct: 40 VERADPHVGL 49


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 37 VERVDPHIGL 46


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 37 VERVDPHIGL 46


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 41 VERVDPHIGL 50


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 41 VERVDPHIGL 50


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 57 VERVDPHIGL 66


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 55 VERVDPHIGL 64


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1  VRKCDPHIGL 10
          + + DPHIGL
Sbjct: 33 IERADPHIGL 42


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1  VRKCDPHIGL 10
          + + DPHIGL
Sbjct: 33 IERADPHIGL 42


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 41 VERVDPHIGL 50


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 43 VERVDPHIGL 52


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 43 VERVDPHIGL 52


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 39 VERVDPHIGL 48


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1  VRKCDPHIGL 10
          + + DPHIGL
Sbjct: 33 IERADPHIGL 42


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1  VRKCDPHIGL 10
          + + DPHIGL
Sbjct: 35 IERADPHIGL 44


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1  VRKCDPHIGL 10
          +++ DPH+GL
Sbjct: 33 IQRADPHVGL 42


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 35 VERVDPHIGL 44


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1  VRKCDPHIGL 10
          V + DPHIGL
Sbjct: 52 VERVDPHIGL 61


>sp|AZUP_RHILV|PUTATIVE pseudoazurin|Rhizobium leguminosarum bv. viciae

Query: 1   VRKCDPHIGL 10
           V KC PH+G+
Sbjct: 98  VLKCTPHVGM 107




23|Sequence|111|120|PHIGLLHRGT

>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv.

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 56 PHIGLLHRGT 65


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 45 PHIGLLHRGT 54


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 44 PHIGLLHRGT 53


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 44 PHIGLLHRGT 53


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 41 PHIGLLHRGT 50


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 41 PHIGLLHRGT 50


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 46 PHIGLLHRGT 55


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 60 PHIGLLHRGT 69


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 58 PHIGLLHRGT 67


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 46 PHIGLLHRGT 55


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 37 PHIGLLHRGT 46


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 38 PHVGLLHRGT 47


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 37 PHIGLLHRGT 46


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 41 PHIGLLHRGT 50


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 41 PHIGLLHRGT 50


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 43 PHIGLLHRGT 52


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 50 PHIGLLHRGT 59


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 62 PHIGLLHRGT 71


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 58 PHIGLLHRGT 67


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 46 PHIGLLHRGT 55


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 46 PHIGLLHRGT 55


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 48 PHIGLLHRGT 57


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 44 PHIGLLHRGT 53


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 58 PHIGLLHRGT 67


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 49 PHIGLLHRGT 58


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 38 PHVGLLHRGT 47


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 38 PHVGLLHRGT 47


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 42 PHIGLLHRGT 51


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 59 PHIGLLHRGT 68


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 51 PHIGLLHRGT 60


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 42 PHIGLLHRGT 51


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 46 PHIGLLHRGT 55


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 38 PHVGLLHRGT 47


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 38 PHVGLLHRGT 47


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 38 PHVGLLHRGT 47


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 49 PHIGLLHRGT 58


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 39 PHIGLLHRGT 48


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 46 PHIGLLHRGT 55


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 38 PHVGLLHRGT 47


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp.

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 38 PHVGLLHRGT 47


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 38 PHIGLLHRGT 47


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 49 PHIGLLHRGT 58


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 42 PHIGLLHRGT 51


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 57 PHIGLLHRGT 66


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 53 PHVGLLHRGT 62


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 45 PHVGLLHRGT 54


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 38 PHVGLLHRGT 47


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 51 PHIGLLHRGT 60


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 52 PHVGLLHRGT 61


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 52 PHIGLLHRGT 61


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 56 PHVGLLHRGT 65


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 57 PHVGLLHRGT 66


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 48 PHIGLLHRGT 57


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 56 PHVGLLHRGT 65


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 40 PHVGLLHRGT 49


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 50 PHVGLLHRGT 59


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 50 PHVGLLHRGT 59


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 40 PHIGLLHRGT 49


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 48 PHIGLLHRGT 57


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC

Query: 1  PHIGLLHRGT 10
          PH+GLLHRGT
Sbjct: 44 PHVGLLHRGT 53


>sp|NUOD2_RHIEC|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain ATCC 51251

Query: 1  PHIGLLHRGT 10
          PHIG LHRGT
Sbjct: 51 PHIGYLHRGT 60


>sp|NUOD2_RHIE6|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain CIAT 652)

Query: 1  PHIGLLHRGT 10
          PHIG LHRGT
Sbjct: 51 PHIGYLHRGT 60


>sp|NUOD2_SINMW|NADH-QUINONE oxidoreductase subunit D 2|Sinorhizobium medicae (strain WSM419)

Query: 1  PHIGLLHRGT 10
          PHIG LHRGT
Sbjct: 51 PHIGYLHRGT 60


>sp|NUOD2_RHIME|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium meliloti (strain 1021)

Query: 1  PHIGLLHRGT 10
          PHIG LHRGT
Sbjct: 51 PHIGYLHRGT 60


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 54 PHIGLLHRGT 63


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 64 PHIGLLHRGT 73


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHRGT
Sbjct: 52 PHIGLLHRGT 61


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1  PHIGLLHRGT 10
          PHIG LHRGT
Sbjct: 36 PHIGFLHRGT 45


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp.

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1  PHIGLLHRGT 10
          PH+GLLHR T
Sbjct: 38 PHVGLLHRAT 47


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain

Query: 1  PHIGLLHRGT 10
          PHIGLLHR T
Sbjct: 38 PHIGLLHRAT 47


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 2  HIGLLHRGT 10
          HIGLLHRGT
Sbjct: 38 HIGLLHRGT 46


>sp|NUOD_GEOUR|NADH-QUINONE oxidoreductase subunit D|Geotalea uraniireducens (strain Rf4)

Query: 1  PHIGLLHRG 9
          PHIG LHRG
Sbjct: 38 PHIGYLHRG 46


>sp|NUOD_GEOSL|NADH-QUINONE oxidoreductase subunit D|Geobacter sulfurreducens (strain ATCC

Query: 1  PHIGLLHRG 9
          PHIG LHRG
Sbjct: 38 PHIGYLHRG 46


>sp|NUOD_GEOMG|NADH-QUINONE oxidoreductase subunit D|Geobacter metallireducens (strain ATCC

Query: 1  PHIGLLHRG 9
          PHIG LHRG
Sbjct: 38 PHIGYLHRG 46


>sp|NUOD_CITBB|NADH-QUINONE oxidoreductase subunit D|Citrifermentans bemidjiense (strain ATCC

Query: 1  PHIGLLHRG 9
          PHIG LHRG
Sbjct: 37 PHIGYLHRG 45


>sp|CAS1B_CHLTE|CRISPR-ASSOCIATED endonuclease Cas1 2|Chlorobaculum tepidum (strain ATCC 49652

Query: 1   PHIGLLHRGT 10
           PHIG +H G+
Sbjct: 218 PHIGFIHSGS 227


>sp|NUOD1_THEYD|NADH-QUINONE oxidoreductase subunit D 1|Thermodesulfovibrio yellowstonii

Query: 1  PHIGLLHRG 9
          P+IG LHRG
Sbjct: 42 PYIGYLHRG 50


>sp|NUOD_BACCR|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ATCC 14579

Query: 1  PHIGLLHRGT 10
          P IG LHRGT
Sbjct: 38 PVIGYLHRGT 47


>sp|NUOD_BACCN|NADH-QUINONE oxidoreductase subunit D|Bacillus cytotoxicus (strain DSM 22905

Query: 1  PHIGLLHRGT 10
          P IG LHRGT
Sbjct: 38 PVIGYLHRGT 47


>sp|NUOD_BACC1|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ATCC 10987

Query: 1  PHIGLLHRGT 10
          P IG LHRGT
Sbjct: 38 PVIGYLHRGT 47


>sp|NUOD_BACAN|NADH-QUINONE oxidoreductase subunit D|Bacillus anthracis

Query: 1  PHIGLLHRGT 10
          P IG LHRGT
Sbjct: 38 PVIGYLHRGT 47


>sp|NUOD_BACAH|NADH-QUINONE oxidoreductase subunit D|Bacillus thuringiensis (strain Al Hakam)

Query: 1  PHIGLLHRGT 10
          P IG LHRGT
Sbjct: 38 PVIGYLHRGT 47


>sp|NUOD_BACMK|NADH-QUINONE oxidoreductase subunit D|Bacillus mycoides (strain KBAB4)

Query: 1  PHIGLLHRGT 10
          P IG LHRGT
Sbjct: 38 PVIGYLHRGT 47


>sp|NUOD_BACCZ|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ZK /

Query: 1  PHIGLLHRGT 10
          P IG LHRGT
Sbjct: 38 PVIGYLHRGT 47


>sp|NUOD_BACHK|NADH-QUINONE oxidoreductase subunit D|Bacillus thuringiensis subsp. konkukian

Query: 1  PHIGLLHRGT 10
          P IG LHRGT
Sbjct: 38 PVIGYLHRGT 47


>sp|NUOD_GEOTN|NADH-QUINONE oxidoreductase subunit D|Geobacillus thermodenitrificans (strain

Query: 1  PHIGLLHRGT 10
          P IG LHRGT
Sbjct: 38 PVIGYLHRGT 47


>sp|NUOD_GEOKA|NADH-QUINONE oxidoreductase subunit D|Geobacillus kaustophilus (strain HTA426)

Query: 1  PHIGLLHRGT 10
          P IG LHRGT
Sbjct: 39 PVIGYLHRGT 48




24|Sequence|116|125|LHRGTEKLIE

>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 51 LHRGTEKLIE 60


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 57 LHRGTEKLIE 66


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 51 LHRGTEKLIE 60


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 55 LHRGTEKLIE 64


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 65 LHRGTEKLIE 74


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 51 LHRGTEKLIE 60


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 55 LHRGTEKLIE 64


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 50 LHRGTEKLIE 59


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 49 LHRGTEKLIE 58


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 58 LHRGTEKLIE 67


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 48 LHRGTEKLIE 57


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 51 LHRGTEKLIE 60


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 51 LHRGTEKLIE 60


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 54 LHRGTEKLIE 63


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 46 LHRGTEKLIE 55


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 47 LHRGTEKLIE 56


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 47 LHRGTEKLIE 56


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 69 LHRGTEKLIE 78


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 46 LHRGTEKLIE 55


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 53 LHRGTEKLIE 62


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 53 LHRGTEKLIE 62


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 46 LHRGTEKLIE 55


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 41 LHRGTEKLIE 50


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 46 LHRGTEKLIE 55


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 47 LHRGTEKLIE 56


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 49 LHRGTEKLIE 58


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 49 LHRGTEKLIE 58


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 44 LHRGTEKLIE 53


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 44 LHRGTEKLIE 53


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 53 LHRGTEKLIE 62


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 43 LHRGTEKLIE 52


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 43 LHRGTEKLIE 52


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 43 LHRGTEKLIE 52


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 67 LHRGTEKLME 76


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 45 LHRGTEKLIE 54


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 44 LHRGTEKLIE 53


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 42 LHRGTEKLIE 51


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 44 LHRGTEKLIE 53


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 42 LHRGTEKLIE 51


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 44 LHRGTEKLIE 53


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 44 LHRGTEKLIE 53


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 44 LHRGTEKLIE 53


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 44 LHRGTEKLIE 53


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 44 LHRGTEKLIE 53


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 44 LHRGTEKLIE 53


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 42 LHRGTEKLLE 51


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1  LHRGTEKLIE 10
          LHRGTEKLIE
Sbjct: 59 LHRGTEKLIE 68


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 43 LHRGTEKLVE 52


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 43 LHRGTEKLVE 52


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 62 LHRGTEKLME 71


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 63 LHRGTEKLME 72


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 49 LHRGTEKLME 58


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 63 LHRGTEKLME 72


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 51 LHRGTEKLLE 60


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 50 LHRGTEKLLE 59


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 63 LHRGTEKLME 72


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 55 LHRGTEKLME 64


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 64 LHRGTEKLME 73


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 45 LHRGTEKLME 54


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 57 LHRGTEKLME 66


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv.

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 56 LHRGTEKLME 65


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 57 LHRGTEKLME 66


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 56 LHRGTEKLME 65


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 54 LHRGTEKLME 63


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKL+E
Sbjct: 54 LHRGTEKLME 63


>sp|NUOD2_RHIE6|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain CIAT 652)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 56 LHRGTEKLAE 65


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD2_RHIEC|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain ATCC 51251

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 56 LHRGTEKLAE 65


>sp|NUOD2_SINMW|NADH-QUINONE oxidoreductase subunit D 2|Sinorhizobium medicae (strain WSM419)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 56 LHRGTEKLAE 65


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD2_RHIME|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium meliloti (strain 1021)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 56 LHRGTEKLAE 65


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp.

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 62 LHRGTEKLAE 71


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 61 LHRGTEKLAE 70


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 44 LHRGTEKLAE 53


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 44 LHRGTEKLAE 53


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 44 LHRGTEKLAE 53


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 44 LHRGTEKLAE 53


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 44 LHRGTEKLAE 53


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 44 LHRGTEKLAE 53


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1  LHRGTEKLIE 10
          LHRGTEKL E
Sbjct: 43 LHRGTEKLAE 52


>sp|NUOD_BACCR|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ATCC 14579

Query: 1  LHRGTEKLIE 10
          LHRGTEK+ E
Sbjct: 43 LHRGTEKIAE 52


>sp|NUOD_BACAN|NADH-QUINONE oxidoreductase subunit D|Bacillus anthracis

Query: 1  LHRGTEKLIE 10
          LHRGTEK+ E
Sbjct: 43 LHRGTEKIAE 52


>sp|NUOD_BACC1|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ATCC 10987

Query: 1  LHRGTEKLIE 10
          LHRGTEK+ E
Sbjct: 43 LHRGTEKIAE 52


>sp|NUOD_BACAH|NADH-QUINONE oxidoreductase subunit D|Bacillus thuringiensis (strain Al Hakam)

Query: 1  LHRGTEKLIE 10
          LHRGTEK+ E
Sbjct: 43 LHRGTEKIAE 52


>sp|NUOD_DESRM|NADH-QUINONE oxidoreductase subunit D|Desulforamulus reducens (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRG EKL+E
Sbjct: 44 LHRGIEKLLE 53


>sp|NUOD_BACHK|NADH-QUINONE oxidoreductase subunit D|Bacillus thuringiensis subsp. konkukian

Query: 1  LHRGTEKLIE 10
          LHRGTEK+ E
Sbjct: 43 LHRGTEKIAE 52


>sp|NUOD_BACCZ|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ZK /

Query: 1  LHRGTEKLIE 10
          LHRGTEK+ E
Sbjct: 43 LHRGTEKIAE 52


>sp|NUOD_BACMK|NADH-QUINONE oxidoreductase subunit D|Bacillus mycoides (strain KBAB4)

Query: 1  LHRGTEKLIE 10
          LHRGTEK+ E
Sbjct: 43 LHRGTEKIAE 52


>sp|NUOD_BACCN|NADH-QUINONE oxidoreductase subunit D|Bacillus cytotoxicus (strain DSM 22905

Query: 1  LHRGTEKLIE 10
          LHRGTEK+ E
Sbjct: 43 LHRGTEKIAE 52


>sp|NUOD_THEM4|NADH-QUINONE oxidoreductase subunit D|Thermosipho melanesiensis (strain DSM

Query: 1  LHRGTEKLIE 10
          LHRG EKL+E
Sbjct: 40 LHRGFEKLME 49


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_GEOTN|NADH-QUINONE oxidoreductase subunit D|Geobacillus thermodenitrificans (strain

Query: 1  LHRGTEKLIE 10
          LHRGTEK+ E
Sbjct: 43 LHRGTEKIAE 52


>sp|NUOD_GEOKA|NADH-QUINONE oxidoreductase subunit D|Geobacillus kaustophilus (strain HTA426)

Query: 1  LHRGTEKLIE 10
          LHRGTEK+ E
Sbjct: 44 LHRGTEKIAE 53


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_DEHMC|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain CBDB1)

Query: 1  LHRGTEKLIE 10
          LHRG EKL E
Sbjct: 44 LHRGIEKLAE 53


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_CARHZ|NADH-QUINONE oxidoreductase subunit D|Carboxydothermus hydrogenoformans

Query: 1  LHRGTEKLIE 10
          LHRG EKL E
Sbjct: 43 LHRGIEKLAE 52


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_DEHMB|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRG EKL E
Sbjct: 44 LHRGIEKLAE 53


>sp|NUOD_MOOTA|NADH-QUINONE oxidoreductase subunit D|Moorella thermoacetica (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRG EKL E
Sbjct: 49 LHRGIEKLAE 58


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_DEHM1|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHRG EKL E
Sbjct: 44 LHRGIEKLAE 53


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1  LHRGTEKLIE 10
          LHR TEKL E
Sbjct: 43 LHRATEKLAE 52




25|Sequence|121|130|EKLIEYKTYL

>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 50 EKLIEYKTYL 59


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 62 EKLIEYKTYL 71


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 63 EKLIEYKTYL 72


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 56 EKLIEYKTYL 65


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 50 EKLIEYKTYL 59


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 50 EKLIEYKTYL 59


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1  EKLIEYKTYL 10
          EKL+EYKTYL
Sbjct: 47 EKLLEYKTYL 56


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 50 EKLIEYKTYL 59


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC

Query: 1  EKLIEYKTYL 10
          EKLIEYKTY+
Sbjct: 54 EKLIEYKTYI 63


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 53 EKLIEYKTYL 62


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 51 EKLIEYKTYL 60


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 51 EKLIEYKTYL 60


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 51 EKLIEYKTYL 60


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1  EKLIEYKTYL 10
          EKLIEYK+YL
Sbjct: 58 EKLIEYKSYL 67


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1  EKLIEYKTY 9
          EKLIEYKTY
Sbjct: 74 EKLIEYKTY 82


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 51 EKLIEYKTYL 60


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1  EKLIEYKTYL 10
          EKLIEYK+YL
Sbjct: 64 EKLIEYKSYL 73


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1  EKLIEYKTYL 10
          EKLIEY+TYL
Sbjct: 50 EKLIEYRTYL 59


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 54 EKLIEYKTYL 63


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 70 EKLIEHKTYL 79


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 60 EKLIEHKTYL 69


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 50 EKLIEHKTYL 59


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 50 EKLIEHKTYL 59


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 60 EKLIEHKTYL 69


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1  EKLIEYKTYL 10
          EKLIEYKTYL
Sbjct: 54 EKLIEYKTYL 63


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 50 EKLIEHKTYL 59


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 50 EKLIEHKTYL 59


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIEVKTYL 59


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 46 EKLIEHKTYL 55


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 56 EKLIEQKTYL 65


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 56 EKLIEQKTYL 65


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIEQKTYL 59


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 55 EKLIEQKTYL 64


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 56 EKLIEQKTYL 65


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 52 EKLIEQKTYL 61


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 59 EKLIEQKTYL 68


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 56 EKLIEQKTYL 65


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 49 EKLIEHKTYL 58


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 49 EKLIEHKTYL 58


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 52 EKLIETKTYL 61


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 52 EKLIETKTYL 61


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIETKTYL 59


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIETKTYL 59


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIETKTYL 59


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIEAKTYL 59


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIEAKTYL 59


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 58 EKLIEAKTYL 67


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIEAKTYL 59


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIEAKTYL 59


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 49 EKLIEHKTYL 58


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 49 EKLIEHKTYL 58


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 49 EKLIEHKTYL 58


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 58 EKLIEAKTYL 67


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIETKTYL 59


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 47 EKLIEHKTYL 56


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 49 EKLIEHKTYL 58


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 48 EKLIEHKTYL 57


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 47 EKLIEHKTYL 56


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 49 EKLIEHKTYL 58


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 49 EKLIEHKTYL 58


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 49 EKLIEHKTYL 58


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 48 EKLIEHKTYL 57


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1  EKLIEYKTYL 10
          EKL+E+KTYL
Sbjct: 56 EKLLEHKTYL 65


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1  EKLIEYKTYL 10
          EKLIE+KTYL
Sbjct: 48 EKLIEHKTYL 57


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1  EKLIEYKTYL 10
          EKLIE KTYL
Sbjct: 50 EKLIETKTYL 59


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1  EKLIEYKTYL 10
          EKL EYKTY+
Sbjct: 48 EKLAEYKTYI 57




26|Sequence|126|135|YKTYLQALPY

>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1  YKTYLQALPY 10
          YKTYLQALPY
Sbjct: 68 YKTYLQALPY 77


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM

Query: 1  YKTYLQALPY 10
          YKTYLQALPY
Sbjct: 67 YKTYLQALPY 76


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1  YKTYLQALPY 10
          YKTYLQALPY
Sbjct: 56 YKTYLQALPY 65


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1  YKTYLQALPY 10
          YKTYLQALPY
Sbjct: 56 YKTYLQALPY 65


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1  YKTYLQALPY 10
          YKTYLQALPY
Sbjct: 61 YKTYLQALPY 70


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain

Query: 1  YKTYLQALPY 10
          YKTYLQALPY
Sbjct: 56 YKTYLQALPY 65


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1  YKTYLQALPY 10
          YKTYLQALPY
Sbjct: 56 YKTYLQALPY 65


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1  YKTYLQALPY 10
          YKTYLQALPY
Sbjct: 55 YKTYLQALPY 64


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1  YKTYLQALPY 10
          YKTYLQA+PY
Sbjct: 55 YKTYLQAIPY 64


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1  YKTYLQALPY 10
          Y+TYLQALPY
Sbjct: 55 YRTYLQALPY 64


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1  YKTYLQALPY 10
          YKTYLQALPY
Sbjct: 58 YKTYLQALPY 67


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1  YKTYLQALPY 10
          YK+YLQALPY
Sbjct: 63 YKSYLQALPY 72


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1  YKTYLQALPY 10
          +KTYLQALPY
Sbjct: 65 HKTYLQALPY 74


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1  YKTYLQALPY 10
          YKTYLQA PY
Sbjct: 55 YKTYLQATPY 64


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC

Query: 1  YKTYLQALPY 10
          YKTY+QALPY
Sbjct: 59 YKTYIQALPY 68


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain

Query: 1  YKTYLQALPY 10
          +KTYLQALPY
Sbjct: 65 HKTYLQALPY 74


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1  YKTYLQALPY 10
          +KTYLQALPY
Sbjct: 55 HKTYLQALPY 64


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1  YKTYLQALPY 10
          YKTYLQA+PY
Sbjct: 59 YKTYLQAIPY 68


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1  YKTYLQALPY 10
          YKTYLQA+PY
Sbjct: 59 YKTYLQAIPY 68


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1  YKTYLQALPY 10
          YKTYLQ +PY
Sbjct: 52 YKTYLQGMPY 61


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1  YKTYLQALPY 10
          YK+YLQA+PY
Sbjct: 69 YKSYLQAVPY 78


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 2  KTYLQALPY 10
          KTYLQALPY
Sbjct: 56 KTYLQALPY 64


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 75 HKTYLQAIPY 84


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain

Query: 1  YKTYLQALPY 10
          YKTYLQA PY
Sbjct: 55 YKTYLQATPY 64


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1  YKTYLQALPY 10
          +KTYLQALPY
Sbjct: 53 HKTYLQALPY 62


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B

Query: 2  KTYLQALPY 10
          KTYLQALPY
Sbjct: 55 KTYLQALPY 63


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 2  KTYLQALPY 10
          KTYLQALPY
Sbjct: 55 KTYLQALPY 63


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC

Query: 2  KTYLQALPY 10
          KTYLQALPY
Sbjct: 55 KTYLQALPY 63


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1  YKTYLQALPY 10
          +KTYLQALPY
Sbjct: 53 HKTYLQALPY 62


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 2  KTYLQALPY 10
          KTYLQALPY
Sbjct: 55 KTYLQALPY 63


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 2  KTYLQALPY 10
          KTYLQALPY
Sbjct: 55 KTYLQALPY 63


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1  YKTYLQALPY 10
          +KTYLQALPY
Sbjct: 53 HKTYLQALPY 62


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 61 KTYLQAIPY 69


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C

Query: 2  KTYLQALPY 10
          KTYLQALPY
Sbjct: 55 KTYLQALPY 63


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 65 KTYLQAIPY 73


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 58 KTYLQAIPY 66


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1  YKTYLQALPY 10
          +KTYLQALPY
Sbjct: 51 HKTYLQALPY 60


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAIPY 64


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 62 KTYLQAIPY 70


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAIPY 64


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAIPY 64


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 58 KTYLQAMPY 66


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 52 HKTYLQAIPY 61


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 58 KTYLQAMPY 66


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 62 KTYLQAIPY 70


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 62 KTYLQAIPY 70


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC

Query: 1  YKTYLQALPY 10
          +KTYLQA PY
Sbjct: 55 HKTYLQATPY 64


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 62 KTYLQAIPY 70


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 52 HKTYLQAIPY 61


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 54 HKTYLQAIPY 63


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1  YKTYLQALPY 10
          +KTYLQA PY
Sbjct: 55 HKTYLQATPY 64


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAIPY 64


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 54 HKTYLQAIPY 63


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 54 HKTYLQAIPY 63


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 54 HKTYLQAIPY 63


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 54 HKTYLQAIPY 63


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 54 HKTYLQAIPY 63


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1  YKTYLQALPY 10
          +KTY+QALPY
Sbjct: 53 HKTYIQALPY 62


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 54 HKTYLQAIPY 63


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 54 HKTYLQAIPY 63


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1  YKTYLQALPY 10
          +KTYLQA+PY
Sbjct: 54 HKTYLQAIPY 63


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 64 KTYLQAVPY 72


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 64 KTYLQAVPY 72


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 2  KTYLQALPY 10
          KTY+QALPY
Sbjct: 54 KTYIQALPY 62


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 2  KTYLQALPY 10
          KTYLQA+PY
Sbjct: 56 KTYLQAVPY 64


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1  YKTYLQALPY 10
          +KT+LQALPY
Sbjct: 53 HKTFLQALPY 62


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 2  KTYLQALPY 10
          KTYLQA PY
Sbjct: 56 KTYLQATPY 64


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1  YKTYLQALPY 10
          +KTY+Q+LPY
Sbjct: 53 HKTYIQSLPY 62


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1  YKTYLQALPY 10
          +KTYLQA PY
Sbjct: 55 HKTYLQATPY 64


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1  YKTYLQALPY 10
          YKTY+Q++PY
Sbjct: 53 YKTYIQSVPY 62


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 2  KTYLQALPY 10
          KTY+QA+PY
Sbjct: 55 KTYMQAVPY 63


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1  YKTYLQALPY 10
          YKTY +ALPY
Sbjct: 79 YKTYPKALPY 88


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain

Query: 1  YKTYLQALPY 10
          +KTY+Q+LPY
Sbjct: 53 HKTYIQSLPY 62


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1  YKTYLQALPY 10
          +KT++QALPY
Sbjct: 53 HKTFIQALPY 62


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1  YKTYLQALPY 10
          +KT++QALPY
Sbjct: 53 HKTFIQALPY 62


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1  YKTYLQALPY 10
          +KT++QALPY
Sbjct: 53 HKTFIQALPY 62


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1  YKTYLQALPY 10
          +KT++QALPY
Sbjct: 53 HKTFIQALPY 62


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 2  KTYLQALPY 10
          KTY+Q+LPY
Sbjct: 54 KTYIQSLPY 62


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 2  KTYLQALPY 10
          KTY+Q+LPY
Sbjct: 54 KTYIQSLPY 62


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain

Query: 2  KTYLQALPY 10
          KTY+Q+LPY
Sbjct: 54 KTYIQSLPY 62


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 2  KTYLQALPY 10
          KTYLQA PY
Sbjct: 56 KTYLQAGPY 64


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 2  KTYLQALPY 10
          KTYLQA PY
Sbjct: 56 KTYLQAGPY 64


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 2  KTYLQALPY 10
          KTY+Q+LPY
Sbjct: 54 KTYIQSLPY 62


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 2  KTYLQALPY 10
          KTYLQA PY
Sbjct: 56 KTYLQAGPY 64


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 2  KTYLQALPY 10
          KTYLQ++PY
Sbjct: 54 KTYLQSVPY 62


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 2  KTYLQALPY 10
          KTYLQ++PY
Sbjct: 54 KTYLQSVPY 62


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1  YKTYLQALPY 10
          +KT++Q+LPY
Sbjct: 53 HKTFIQSLPY 62


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 2  KTYLQALPY 10
          KTYLQ LPY
Sbjct: 54 KTYLQNLPY 62




27|Sequence|131|140|QALPYFDRLD

>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 72 QALPYFDRLD 81


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 68 QALPYFDRLD 77


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 70 QALPYFDRLD 79


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 61 QALPYFDRLD 70


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 61 QALPYFDRLD 70


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 64 QALPYFDRLD 73


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 70 QALPYFDRLD 79


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 73 QALPYFDRLD 82


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 61 QALPYFDRLD 70


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 61 QALPYFDRLD 70


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 59 QAIPYFDRLD 68


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 56 QALPYFDRLD 65


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 57 QAIPYFDRLD 66


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 57 QAIPYFDRLD 66


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 60 QALPYFDRLD 69


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 58 QALPYFDRLD 67


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 60 QAVPYFDRLD 69


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 60 QALPYFDRLD 69


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 59 QAIPYFDRLD 68


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 62 QAIPYFDRLD 71


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 66 QALPYFDRLD 75


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 60 QALPYFDRLD 69


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 58 QALPYFDRLD 67


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 58 QALPYFDRLD 67


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 64 QAIPYFDRLD 73


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 59 QAIPYFDRLD 68


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 59 QAIPYFDRLD 68


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 74 QAVPYFDRLD 83


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 59 QAIPYFDRLD 68


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 59 QAIPYFDRLD 68


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 64 QAIPYFDRLD 73


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1  QALPYFDRLD 10
          QALPYFDRLD
Sbjct: 63 QALPYFDRLD 72


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 59 QAIPYFDRLD 68


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 59 QAVPYFDRLD 68


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 59 QAIPYFDRLD 68


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 59 QAIPYFDRLD 68


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 60 QAVPYFDRLD 69


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 68 QAVPYFDRLD 77


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 62 QAMPYFDRLD 71


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 62 QAMPYFDRLD 71


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 65 QAIPYFDRLD 74


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 60 QAIPYFDRLD 69


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 69 QAIPYFDRLD 78


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 60 QAIPYFDRLD 69


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 60 QAIPYFDRLD 69


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 80 QAIPYFDRLD 89


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 66 QAIPYFDRLD 75


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 66 QAIPYFDRLD 75


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 60 QAIPYFDRLD 69


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 66 QAIPYFDRLD 75


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 60 QAIPYFDRLD 69


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 66 QAIPYFDRLD 75


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1  QALPYFDRLD 10
          +ALPYFDRLD
Sbjct: 84 KALPYFDRLD 93


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 60 QAVPYFDRLD 69


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 60 QAVPYFDRLD 69


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 68 QAVPYFDRLD 77


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1  QALPYFDRLD 10
          QA+PYFDRLD
Sbjct: 60 QAVPYFDRLD 69


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1  QALPYFDRLD 10
          QA PYFDRLD
Sbjct: 60 QATPYFDRLD 69


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC

Query: 1  QALPYFDRLD 10
          QA PYFDRLD
Sbjct: 60 QATPYFDRLD 69


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 59 QALPYMDRLD 68


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1  QALPYFDRLD 10
          QA PYFDRLD
Sbjct: 60 QATPYFDRLD 69


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 59 QALPYMDRLD 68


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 59 QALPYMDRLD 68


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 59 QALPYMDRLD 68


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 59 QALPYMDRLD 68


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 59 QALPYMDRLD 68


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 58 QALPYMDRLD 67


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1  QALPYFDRLD 10
          Q +PYFDRLD
Sbjct: 77 QTIPYFDRLD 86


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1  QALPYFDRLD 10
          QA PYFDRLD
Sbjct: 60 QATPYFDRLD 69


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain

Query: 1  QALPYFDRLD 10
          QA PYFDRLD
Sbjct: 60 QATPYFDRLD 69


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1  QALPYFDRLD 10
          QA PYFDRLD
Sbjct: 60 QATPYFDRLD 69


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1  QALPYFDRLD 10
          Q +PYFDRLD
Sbjct: 57 QGMPYFDRLD 66


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 58 QALPYMDRLD 67


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC

Query: 1  QALPYFDRLD 10
          Q +PYFDRLD
Sbjct: 64 QNIPYFDRLD 73


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1  QALPYFDRLD 10
          Q LPYFDRLD
Sbjct: 72 QNLPYFDRLD 81


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1  QALPYFDRLD 10
          Q LPYFDRLD
Sbjct: 71 QNLPYFDRLD 80


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1  QALPYFDRLD 10
          Q LPYFDRLD
Sbjct: 72 QNLPYFDRLD 81


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1  QALPYFDRLD 10
          Q LPYFDRLD
Sbjct: 79 QNLPYFDRLD 88


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 58 QALPYMDRLD 67


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 60 QALPYLDRLD 69


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 58 QALPYMDRLD 67


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  QALPYFDRLD 10
          Q LPYFDRLD
Sbjct: 69 QNLPYFDRLD 78


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 58 QALPYMDRLD 67


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 58 QALPYMDRLD 67


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040)

Query: 1  QALPYFDRLD 10
          Q LPYFDRLD
Sbjct: 70 QNLPYFDRLD 79


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  QALPYFDRLD 10
          Q LPYFDRLD
Sbjct: 71 QNLPYFDRLD 80


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  QALPYFDRLD 10
          Q LPYFDRLD
Sbjct: 69 QNLPYFDRLD 78


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1  QALPYFDRLD 10
          QALPY DRLD
Sbjct: 58 QALPYMDRLD 67


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1  QALPYFDRLD 10
          Q +PYFDRLD
Sbjct: 82 QNIPYFDRLD 91


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1  QALPYFDRLD 10
          Q +PYFDRLD
Sbjct: 60 QNVPYFDRLD 69


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1  QALPYFDRLD 10
          QA+PY DRLD
Sbjct: 60 QAVPYLDRLD 69


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain

Query: 1  QALPYFDRLD 10
          Q+LPY DRLD
Sbjct: 58 QSLPYMDRLD 67


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1  QALPYFDRLD 10
          Q+LPY DRLD
Sbjct: 58 QSLPYMDRLD 67


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1  QALPYFDRLD 10
          Q+LPY DRLD
Sbjct: 58 QSLPYMDRLD 67


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1  QALPYFDRLD 10
          Q+LPY DRLD
Sbjct: 58 QSLPYMDRLD 67


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1  QALPYFDRLD 10
          Q+LPY DRLD
Sbjct: 58 QSLPYMDRLD 67


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1  QALPYFDRLD 10
          Q  PYFDRLD
Sbjct: 65 QGTPYFDRLD 74


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG

Query: 1  QALPYFDRLD 10
          QA+PY DRLD
Sbjct: 60 QAVPYLDRLD 69


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1  QALPYFDRLD 10
          QA+PY DRLD
Sbjct: 60 QAVPYLDRLD 69


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1  QALPYFDRLD 10
          QA+PY DRLD
Sbjct: 60 QAVPYLDRLD 69


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1  QALPYFDRLD 10
          QA+PY DRLD
Sbjct: 60 QAVPYLDRLD 69


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1  QALPYFDRLD 10
          QA+PY DRLD
Sbjct: 60 QAVPYLDRLD 69


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1  QALPYFDRLD 10
          QA+PY DRLD
Sbjct: 60 QAVPYLDRLD 69


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1  QALPYFDRLD 10
          QA+PY DRLD
Sbjct: 60 QAVPYLDRLD 69


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1  QALPYFDRLD 10
          QA+PY DRLD
Sbjct: 60 QAVPYLDRLD 69


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1  QALPYFDRLD 10
          QA+PY DRLD
Sbjct: 60 QAVPYLDRLD 69


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1  QALPYFDRLD 10
          Q+LPY DRLD
Sbjct: 58 QSLPYMDRLD 67


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain

Query: 1  QALPYFDRLD 10
          Q+LPY DRLD
Sbjct: 58 QSLPYMDRLD 67


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1  QALPYFDRLD 10
          Q+LPY DRLD
Sbjct: 58 QSLPYMDRLD 67


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1  QALPYFDRLD 10
          Q  PYFDRLD
Sbjct: 78 QNTPYFDRLD 87


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1  QALPYFDRLD 10
          Q+LPY DRLD
Sbjct: 58 QSLPYMDRLD 67


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 76 QSVPYMDRLD 85


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 76 QSVPYMDRLD 85


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 76 QSVPYMDRLD 85


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv.

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 76 QSVPYMDRLD 85


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 76 QSVPYMDRLD 85


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 76 QSVPYMDRLD 85


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 76 QSVPYMDRLD 85


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 76 QSVPYMDRLD 85


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|RLMM_AZOSB|RIBOSOMAL RNA large subunit methyltransferase|Azoarcus sp. (strain BH72)

Query: 1  QALPYFDRLD 10
          Q LP+FDR+D
Sbjct: 80 QLLPWFDRID 89


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1  QALPYFDRLD 10
          Q LPY DRLD
Sbjct: 78 QNLPYLDRLD 87


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd

Query: 1  QALPYFDRLD 10
          Q LPY DRLD
Sbjct: 78 QNLPYLDRLD 87


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1  QALPYFDRLD 10
          QA PY DRLD
Sbjct: 60 QAGPYLDRLD 69


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSVPYMDRLD 67


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1  QALPYFDRLD 10
          QA PY DRLD
Sbjct: 60 QAGPYLDRLD 69


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1  QALPYFDRLD 10
          QA PY DRLD
Sbjct: 60 QAGPYLDRLD 69


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1  QALPYFDRLD 10
          Q LPY DRLD
Sbjct: 58 QNLPYMDRLD 67


>sp|NUOD_DESRM|NADH-QUINONE oxidoreductase subunit D|Desulforamulus reducens (strain ATCC

Query: 1  QALPYFDRLD 10
          Q +PY DRLD
Sbjct: 59 QVIPYTDRLD 68


>sp|NUOD1_ROSS1|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus sp. (strain RS-1)

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSMPYTDRLD 67


>sp|NUOD2_ROSCS|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus castenholzii (strain DSM

Query: 1  QALPYFDRLD 10
          Q++PY DRLD
Sbjct: 58 QSMPYTDRLD 67


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1  QALPYFDRLD 10
          Q +PY DRLD
Sbjct: 58 QNIPYMDRLD 67




28|Sequence|136|145|FDRLDYVSMM

>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDY+SMM
Sbjct: 70 FDRLDYMSMM 79


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 89 FDRLDYVSPM 98


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 73 FDRLDYVSPM 82


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 79 FDRLDYVSPM 88


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 83 DRLDYVSMM 91


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 64 FDRLDYVSPM 73


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 69 FDRLDYVSPM 78


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 69 FDRLDYVSPM 78


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 65 FDRLDYVSPM 74


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 62 FDRLDYVSPM 71


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 65 FDRLDYVSPM 74


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 65 DRLDYVSMM 73


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 65 DRLDYVSMM 73


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 65 DRLDYVSMM 73


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 62 FDRLDYVSPM 71


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 64 FDRLDYVSPM 73


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 65 DRLDYVSMM 73


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 65 DRLDYVSMM 73


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 65 DRLDYVSMM 73


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 63 FDRLDYVSPM 72


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 64 FDRLDYVSPM 73


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 64 FDRLDYVSPM 73


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 64 FDRLDYVSPM 73


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 64 FDRLDYVSPM 73


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 63 FDRLDYVSPM 72


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 71 FDRLDYVSPM 80


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 64 FDRLDYVSPM 73


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 64 FDRLDYVSPM 73


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 68 FDRLDYVSPM 77


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 64 FDRLDYVSPM 73


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 63 FDRLDYVSPM 72


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 69 FDRLDYVSPM 78


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 66 FDRLDYVSPM 75


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 66 FDRLDYVSPM 75


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp.

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 61 FDRLDYVSPM 70


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 66 FDRLDYVSPM 75


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv.

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 69 FDRLDYVAPM 78


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 82 DRLDYVSMM 90


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp.

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 87 FDRLDYVAPM 96


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 67 FDRLDYVAPM 76


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1  FDRLDYVSMM 10
          FDRLDYVS M
Sbjct: 66 FDRLDYVSPM 75


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 2  DRLDYVSMM 10
          DRLDYVSMM
Sbjct: 64 DRLDYVSMM 72


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 83 FDRLDYVAPM 92


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 74 FDRLDYVAPM 83


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 82 FDRLDYVAPM 91


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 71 FDRLDYVAPM 80


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1  FDRLDYVSMM 10
          FDRLDYV  M
Sbjct: 84 FDRLDYVGTM 93


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 71 FDRLDYVAPM 80


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 77 FDRLDYVAPM 86


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1  FDRLDYVSMM 10
          FDRLDYV  M
Sbjct: 65 FDRLDYVGTM 74


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 74 FDRLDYVAPM 83


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 77 FDRLDYVAPM 86


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 64 FDRLDYVAPM 73


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 70 FDRLDYVAPM 79


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 85 FDRLDYVAPM 94


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 76 FDRLDYVAPM 85


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 74 FDRLDYVAPM 83


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDY+SMM
Sbjct: 64 DRLDYMSMM 72


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 67 FDRLDYVAPM 76


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 76 FDRLDYVAPM 85


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 67 FDRLDYVAPM 76


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 71 FDRLDYVAPM 80


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 65 FDRLDYVAPM 74


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 75 FDRLDYVAPM 84


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 71 FDRLDYVAPM 80


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1  FDRLDYVSMM 10
          FDRLDYV+ M
Sbjct: 71 FDRLDYVAPM 80


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 2  DRLDYVSMM 10
          DRLDYVSM+
Sbjct: 64 DRLDYVSML 72


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 2  DRLDYVSMM 10
          DRLDYVSM+
Sbjct: 64 DRLDYVSML 72




29|Sequence|141|150|YVSMMCNEQA

>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1  YVSMMCNEQA 10
          YVSMMCNEQA
Sbjct: 68 YVSMMCNEQA 77


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp.

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp.

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv.

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 87 YVSMMCNEHA 96


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 68 YVSMMCNEHA 77


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1  YVSMMCNEQA 10
          YVSMMCNE A
Sbjct: 86 YVSMMCNEHA 95


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1  YVSMMCNEQA 10
          Y+SMMCNE A
Sbjct: 68 YMSMMCNESA 77


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1  YVSMMCNEQA 10
          YVSM+CNE A
Sbjct: 68 YVSMLCNEHA 77


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1  YVSMMCNEQA 10
          YVSMMCNE  
Sbjct: 68 YVSMMCNEHG 77


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1  YVSMMCNEQA 10
          YVSMMCNE  
Sbjct: 68 YVSMMCNEHG 77


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1  YVSMMCNEQA 10
          YVSM+CNE A
Sbjct: 68 YVSMLCNEHA 77


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1  YVSMMCNEQA 10
          YVSMM NEQA
Sbjct: 69 YVSMMVNEQA 78


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B

Query: 1  YVSMMCNEQA 10
          YVSMM NEQA
Sbjct: 69 YVSMMVNEQA 78


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1  YVSMMCNEQA 10
          YVSMM NEQA
Sbjct: 69 YVSMMVNEQA 78


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C

Query: 1  YVSMMCNEQA 10
          YVSMM NEQA
Sbjct: 69 YVSMMVNEQA 78


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1  YVSMMCNEQA 10
          YVSMM NEQA
Sbjct: 69 YVSMMVNEQA 78


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC

Query: 1  YVSMMCNEQA 10
          YVSMM NEQA
Sbjct: 69 YVSMMVNEQA 78


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1  YVSMMCNEQA 10
          YVSMM NEQA
Sbjct: 68 YVSMMSNEQA 77


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   YVSMMCNEQA 10
           YVS MC EQA
Sbjct: 94  YVSPMCEEQA 103


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1  YVSMMCNEQA 10
          YVSMM NE A
Sbjct: 68 YVSMMANEHA 77


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1  YVSMMCNEQA 10
          YVSMM NE A
Sbjct: 68 YVSMMANEHA 77




30|Sequence|146|155|CNEQAYSLAV

>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1  CNEQAYSLAV 10
          CNEQAY LA+
Sbjct: 73 CNEQAYCLAI 82


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1  CNEQAYSLAV 10
          CNE AY LAV
Sbjct: 73 CNEHAYCLAV 82


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1  CNEQAYSLAV 10
          CNE AY LAV
Sbjct: 73 CNESAYCLAV 82


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1  CNEQAYSLAV 10
          CNE AY LA+
Sbjct: 73 CNEHAYCLAI 82


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1  CNEQAYSLAV 10
          CNE AY LA+
Sbjct: 73 CNEHAYCLAI 82


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1  CNEQAYSLAV 10
          CNE AY LA+
Sbjct: 73 CNEHAYCLAI 82


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1  CNEQAYSLAV 10
          CNE AY LA+
Sbjct: 73 CNEHAYCLAI 82


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1  CNEQAYSLAV 10
          CNE AY LA+
Sbjct: 73 CNEHAYCLAI 82


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1  CNEQAYSLAV 10
          CNE AY LA+
Sbjct: 73 CNEHAYCLAI 82




31|Sequence|151|160|YSLAVEKLLN

>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1  YSLAVEKLLN 10
          Y LAVEKLLN
Sbjct: 90 YVLAVEKLLN 99


>sp|NUOD2_SOLUE|NADH-QUINONE oxidoreductase subunit D 2|Solibacter usitatus (strain Ellin6076)

Query: 1  YSLAVEKLLN 10
          Y LA+EKLLN
Sbjct: 83 YCLAIEKLLN 92


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain

Query: 1  YSLAVEKLLN 10
          Y LA+EKLLN
Sbjct: 90 YVLAIEKLLN 99




32|Sequence|156|165|EKLLNIRPPP

 ***** No hits found ******


33|Sequence|161|170|IRPPPRAQWI

>sp|NUOD1_ANADF|NADH-QUINONE oxidoreductase subunit D 1|Anaeromyxobacter sp. (strain Fw109-5)

Query: 1   IRPPPRAQWI 10
           +  PPRAQW+
Sbjct: 97  VEVPPRAQWL 106


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 1   IRPPPRAQWI 10
           I PPPRA++I
Sbjct: 95  IEPPPRAKFI 104




34|Sequence|166|175|RAQWIRVLFG

>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   RAQWIRVLFG 10
           RAQWIRVLF 
Sbjct: 109 RAQWIRVLFA 118


>sp|NUOD2_KORVE|NADH-QUINONE oxidoreductase subunit D 2|Koribacter versatilis (strain Ellin345)

Query: 1   RAQWIRVL 8
           RAQWIRVL
Sbjct: 104 RAQWIRVL 111


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   RAQWIRVLFG 10
           RAQWIR +F 
Sbjct: 103 RAQWIRTMFA 112


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   RAQWIRVLFG 10
           RA+WIRV+F 
Sbjct: 119 RAKWIRVMFA 128




35|Sequence|171|180|RVLFGEITRL

>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   RVLFGEITRL 10
           RVLF EITRL
Sbjct: 98  RVLFAEITRL 107


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   RVLFGEITRL 10
           R +FGEITRL
Sbjct: 98  RTMFGEITRL 107


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   RVLFGEITRL 10
           RV+F EITRL
Sbjct: 98  RVMFSEITRL 107


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   RVLFGEITRL 10
           RV+F EITRL
Sbjct: 98  RVMFSEITRL 107


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   RVLFGEITRL 10
           RV+F EITRL
Sbjct: 98  RVMFAEITRL 107


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   RVLFGEITRL 10
           RV+F EITRL
Sbjct: 98  RVMFSEITRL 107


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   RVLFGEITRL 10
           RVLF EITR+
Sbjct: 114 RVLFAEITRI 123


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   RVLFGEITRL 10
           RVLF EITR+
Sbjct: 104 RVLFSEITRI 113


>sp|CAS2B_CHLAA|CRISPR-ASSOCIATED endoribonuclease Cas2 2|Chloroflexus aurantiacus (strain ATCC

Query: 1  RVLFGEITR 9
          R LFGEITR
Sbjct: 45 RALFGEITR 53




36|Sequence|176|185|EITRLLNHIM

>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   EITRLLNHIM 10
           EITRLLNH+M
Sbjct: 103 EITRLLNHLM 112


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   EITRLLNHIM 10
           E+TRL+NHIM
Sbjct: 105 EVTRLINHIM 114


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   EITRLLNHIM 10
           EITRLLNH+M
Sbjct: 103 EITRLLNHLM 112


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   EITRLLNHIM 10
           EITRLLNH+M
Sbjct: 103 EITRLLNHLM 112


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   EITRLLNHIM 10
           EITRLLNH+M
Sbjct: 103 EITRLLNHLM 112


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   EITRLLNHIM 10
           EITRLLNH+M
Sbjct: 103 EITRLLNHLM 112


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   EITRLLNHIM 10
           EITRLLNH+M
Sbjct: 103 EITRLLNHLM 112


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   EITRLLNHIM 10
           EITRLLNH+M
Sbjct: 103 EITRLLNHLM 112


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   EITRLLNHIM 10
           EITRLLNH+M
Sbjct: 103 EITRLLNHLM 112


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 121 EITRILNHLM 130


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 121 EITRILNHLM 130


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 121 EITRILNHLM 130


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 121 EITRILNHLM 130


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   EITRLLNHIM 10
           EITRLLNH+M
Sbjct: 103 EITRLLNHLM 112


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 121 EITRILNHLM 130


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 121 EITRILNHLM 130


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRILNHLM 112


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   EITRLLNHIM 10
           EITR+LNHI+
Sbjct: 129 EITRILNHIL 138


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRILNHLM 112


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRILNHLM 112


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 122 EITRILNHLM 131


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   EITRLLNHIM 10
           E+TR+LNH+M
Sbjct: 103 EVTRILNHLM 112


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRILNHLM 112


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRILNHLM 112


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   EITRLLNHIM 10
           EITRLLNH++
Sbjct: 103 EITRLLNHLL 112


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRILNHLM 112


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRILNHLM 112


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRILNHLM 112


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   EITRLLNHIM 10
           EITR+LNH+M
Sbjct: 103 EITRVLNHLM 112


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   EITRLLNHIM 10
           E+TR+LNH+M
Sbjct: 104 EVTRILNHLM 113


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   EITRLLNHIM 10
           E+TR+LNH+M
Sbjct: 104 EVTRILNHLM 113


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   EITRLLNHIM 10
           EITRLLNH++
Sbjct: 103 EITRLLNHLL 112


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   EITRLLNHIM 10
           E+TR+LNH+M
Sbjct: 104 EVTRILNHLM 113


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   EITRLLNHIM 10
           E+TR+LNH+M
Sbjct: 104 EVTRILNHLM 113


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 113 EITRILNHLL 122


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   EITRLLNHIM 10
           E+TR+LNH+M
Sbjct: 104 EVTRILNHLM 113


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   EITRLLNHIM 10
           EITR++NH+M
Sbjct: 103 EITRIMNHLM 112


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 109 EITRILNHLL 118


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   EITRLLNHIM 10
           E+TRLLNH++
Sbjct: 108 ELTRLLNHLL 117


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   EITRLLNHIM 10
           E+TR+LNH+M
Sbjct: 104 EVTRILNHLM 113


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   EITRLLNHIM 10
           E+TR+LNH+M
Sbjct: 103 EVTRVLNHLM 112


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 101 EITRILNHLL 110


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   EITRLLNHIM 10
           EITR++NH+M
Sbjct: 103 EITRIMNHLM 112


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   EITRLLNHIM 10
           E+TR+LNH+M
Sbjct: 103 EVTRVLNHLM 112


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 119 EITRILNHLL 128


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   EITRLLNHIM 10
           EITRLLNH++
Sbjct: 103 EITRLLNHLL 112


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRILNHLL 112


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EVTRILNHLL 112


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EVTRILNHLL 112


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EVTRILNHLL 112


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EVTRILNHLL 112


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   EITRLLNHIM 10
           E+TRLLNH++
Sbjct: 103 ELTRLLNHLL 112


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   EITRLLNHIM 10
           E+TRLLNH++
Sbjct: 103 ELTRLLNHLL 112


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   EITRLLNHIM 10
           EITR+ NH+M
Sbjct: 121 EITRIKNHLM 130


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   EITRLLNHIM 10
           EITR+ NH+M
Sbjct: 121 EITRIKNHLM 130


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   EITRLLNHIM 10
           EITR+ NH+M
Sbjct: 121 EITRIKNHLM 130


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   EITRLLNHIM 10
           EITR+ NH+M
Sbjct: 121 EITRIKNHLM 130


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   EITRLLNHIM 10
           EITR+ NH+M
Sbjct: 121 EITRIKNHLM 130


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   EITRLLNHIM 10
           EITR+ NH+M
Sbjct: 121 EITRIKNHLM 130


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   EITRLLNHIM 10
           EITR+ NH+M
Sbjct: 121 EITRIKNHLM 130


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   EITRLLNHIM 10
           EITR+ NH+M
Sbjct: 121 EITRIKNHLM 130


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 106 ELTRILNHLL 115


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EVTRILNHLL 112


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EMTRILNHLL 112


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 ELTRILNHLL 112


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 111 ELTRVLNHLL 120


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 ELTRILNHLL 112


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   EITRLLNHIM 10
           EITR+LNH++
Sbjct: 103 EITRVLNHLL 112


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 ELTRILNHLL 112


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 106 ELTRILNHLL 115


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EMTRILNHLL 112


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EMTRILNHLL 112


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EMTRILNHLL 112


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EMTRILNHLL 112


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EMTRILNHLL 112


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EMTRILNHLL 112


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EMTRILNHLL 112


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 103 EMTRILNHLL 112


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 106 ELTRILNHLL 115


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   EITRLLNHIM 10
           E+TR+LNH++
Sbjct: 106 ELTRILNHLL 115




37|Sequence|181|190|LNHIMAVTTH

>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   LNHIMAVTTH 10
           LNH++ VTTH
Sbjct: 106 LNHLLNVTTH 115




38|Sequence|186|195|AVTTHALDLG

>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 2   VTTHALDLG 10
           VTTHALD+G
Sbjct: 112 VTTHALDVG 120




39|Sequence|191|200|ALDLGAMTPF

>sp|NUOD_CHLTE|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum tepidum (strain ATCC 49652

Query: 1   ALDLGAMTPF 10
           A+DLGA TPF
Sbjct: 144 AIDLGAFTPF 153


>sp|NUOD_CHLP8|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum parvum (strain DSM 263

Query: 1   ALDLGAMTPF 10
           A+DLGA TPF
Sbjct: 144 AIDLGAFTPF 153


>sp|NUOD2_SYMTH|NADH-QUINONE oxidoreductase subunit D 2|Symbiobacterium thermophilum (strain DSM

Query: 1   ALDLGAMTPF 10
           A+DLGA TPF
Sbjct: 122 AMDLGATTPF 131


>sp|NUOD_CHLPB|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain BS1)

Query: 1   ALDLGAMTPF 10
           A+DLGA TPF
Sbjct: 144 AIDLGAFTPF 153


>sp|NUOD_CHLPD|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain DSM

Query: 1   ALDLGAMTPF 10
           A+DLGA TPF
Sbjct: 144 AIDLGAFTPF 153


>sp|NUOD_PROA2|NADH-QUINONE oxidoreductase subunit D|Prosthecochloris aestuarii (strain DSM 271

Query: 1   ALDLGAMTPF 10
           A+DLGA TPF
Sbjct: 144 AIDLGAFTPF 153


>sp|NUOD_CHLPM|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeovibrioides (strain DSM 265

Query: 1   ALDLGAMTPF 10
           A+DLGA TPF
Sbjct: 144 AIDLGAFTPF 153


>sp|NUOD_CHLL3|NADH-QUINONE oxidoreductase subunit D|Chlorobium luteolum (strain DSM 273

Query: 1   ALDLGAMTPF 10
           A+DLGA TPF
Sbjct: 139 AIDLGAFTPF 148


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   ALDLGAMTPF 10
           ALD+GAMTP 
Sbjct: 121 ALDIGAMTPL 130


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   ALDLGAMTPF 10
           ALD+GAMTP 
Sbjct: 121 ALDIGAMTPL 130


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   ALDLGAMTPF 10
           ALD+GAMTP 
Sbjct: 121 ALDIGAMTPL 130


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   ALDLGAMTPF 10
           ALD+GAMTP 
Sbjct: 121 ALDIGAMTPL 130


>sp|NUOD2_CHLT3|NADH-QUINONE oxidoreductase subunit D 2|Chloroherpeton thalassium (strain ATCC

Query: 1   ALDLGAMTPF 10
           A+DLGA TPF
Sbjct: 143 AIDLGAFTPF 152


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   ALDLGAMTPF 10
           ALD+GAMTP 
Sbjct: 118 ALDVGAMTPL 127


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   ALDLGAMTPF 10
           ALD+GAMTP 
Sbjct: 118 ALDVGAMTPL 127


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   ALDLGAMTPF 10
           ALD+GAMTP 
Sbjct: 118 ALDVGAMTPL 127


>sp|NUOD_THET2|NADH-QUINONE oxidoreductase subunit D|Thermus thermophilus (strain ATCC BAA-163

Query: 2   LDLGAMTPF 10
           LDLGA+TPF
Sbjct: 138 LDLGALTPF 146


>sp|NQO4_THET8|NADH-QUINONE oxidoreductase subunit 4|Thermus thermophilus (strain ATCC 27634

Query: 2   LDLGAMTPF 10
           LDLGA+TPF
Sbjct: 138 LDLGALTPF 146


>sp|NUOD_DEIRA|NADH-QUINONE oxidoreductase subunit D|Deinococcus radiodurans (strain ATCC 13939

Query: 2   LDLGAMTPF 10
           LDLGA+TPF
Sbjct: 130 LDLGALTPF 138


>sp|NUOD_DEIGD|NADH-QUINONE oxidoreductase subunit D|Deinococcus geothermalis (strain DSM 11300

Query: 2   LDLGAMTPF 10
           LDLGA+TPF
Sbjct: 132 LDLGALTPF 140


>sp|NUOD2_SORC5|NADH-QUINONE oxidoreductase subunit D 2|Sorangium cellulosum (strain So ce56)

Query: 1   ALDLGAMTPF 10
           A+D+GA+TPF
Sbjct: 134 AMDVGAVTPF 143


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   ALDLGAMTP 9
           A+D+GAMTP
Sbjct: 120 AMDVGAMTP 128


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   ALDLGAMTPF 10
           ALD+GAMTP 
Sbjct: 120 ALDIGAMTPL 129


>sp|NUOD_CHLL2|NADH-QUINONE oxidoreductase subunit D|Chlorobium limicola (strain DSM 245

Query: 1   ALDLGAMTPF 10
            +DLGA TPF
Sbjct: 139 GIDLGAFTPF 148


>sp|NUOD1_CYTH3|NADH-QUINONE oxidoreductase subunit D 1|Cytophaga hutchinsonii (strain ATCC

Query: 1   ALDLGAMTPF 10
            LD+GA TPF
Sbjct: 132 GLDIGAFTPF 141


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   ALDLGAMTP 9
           ALD+GA+TP
Sbjct: 120 ALDIGALTP 128


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 118 ALDIGAMTVF 127


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 118 ALDIGAMTVF 127


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 118 ALDIGAMTVF 127


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 118 ALDIGAMTVF 127


>sp|NUOD_CAMHC|NADH-QUINONE oxidoreductase subunit D|Campylobacter hominis (strain ATCC BAA-381

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 134 ALDIGAMTVF 143


>sp|NUOD_CAMC5|NADH-QUINONE oxidoreductase subunit D|Campylobacter curvus (strain 525.92)

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 135 ALDIGAMTVF 144


>sp|NUOD1_THEYD|NADH-QUINONE oxidoreductase subunit D 1|Thermodesulfovibrio yellowstonii (strain

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 122 ALDIGAMTVF 131


>sp|NUOD_PELPB|NADH-QUINONE oxidoreductase subunit D|Pelodictyon phaeoclathratiforme (strain

Query: 1   ALDLGAMTPF 10
            +DLGA TPF
Sbjct: 144 GIDLGAFTPF 153


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 118 ALDIGAMTVF 127


>sp|NUOD_GEOMG|NADH-QUINONE oxidoreductase subunit D|Geobacter metallireducens (strain ATCC

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 118 ALDIGAMTVF 127


>sp|NUOD_CHLCH|NADH-QUINONE oxidoreductase subunit D|Chlorobium chlorochromatii (strain CaD3)

Query: 1   ALDLGAMTPF 10
            +DLGA TPF
Sbjct: 144 GIDLGAFTPF 153


>sp|NUOD_GEOSL|NADH-QUINONE oxidoreductase subunit D|Geobacter sulfurreducens (strain ATCC

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 118 ALDIGAMTVF 127


>sp|NUOD1_KORVE|NADH-QUINONE oxidoreductase subunit D 1|Koribacter versatilis (strain Ellin345)

Query: 1   ALDLGAMTPF 10
           ALD+GA+TP 
Sbjct: 134 ALDIGALTPL 143


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 125 ALDIGAMTVF 134


>sp|NUOD_GEOUR|NADH-QUINONE oxidoreductase subunit D|Geotalea uraniireducens (strain Rf4)

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 118 ALDIGAMTVF 127


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 118 ALDIGAMTMF 127


>sp|NUOD_CITBB|NADH-QUINONE oxidoreductase subunit D|Citrifermentans bemidjiense (strain ATCC

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 117 ALDIGAMTVF 126


>sp|NUOD_SULDN|NADH-QUINONE oxidoreductase subunit D|Sulfurimonas denitrificans (strain ATCC

Query: 1   ALDLGAMTPF 10
           ALD+GAMT F
Sbjct: 134 ALDIGAMTVF 143




40|Sequence|196|205|AMTPFFWLFE

>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   AMTPFFWLFE 10
           AMTP  WLFE
Sbjct: 123 AMTPLLWLFE 132


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   AMTPFFWLFE 10
           AMTP  WLFE
Sbjct: 123 AMTPLLWLFE 132


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   AMTPFFWLFE 10
           AMTP  WLFE
Sbjct: 123 AMTPLLWLFE 132


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   AMTPFFWLFE 10
           AM P FW+FE
Sbjct: 121 AMNPLFWMFE 130


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   AMTPFFWLFE 10
           AMTP  W+FE
Sbjct: 126 AMTPLLWMFE 135


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   AMTPFFWLFE 10
           AMTP  W+FE
Sbjct: 126 AMTPLLWMFE 135


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   AMTPFFWLFE 10
           AMTP  W+FE
Sbjct: 126 AMTPLLWMFE 135


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   AMTPFFWLFE 10
           AMTP  W+FE
Sbjct: 126 AMTPLLWMFE 135


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   AMTPFFWLFE 10
           AMTP  WLFE
Sbjct: 135 AMTPNLWLFE 144


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   AMTPFFWLFE 10
           AMTP  WLFE
Sbjct: 138 AMTPNLWLFE 147


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 122 ATTPLLWLFE 131


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 122 ATTPLLWLFE 131


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 124 ATTPLLWLFE 133


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 124 ATTPLLWLFE 133


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 124 ATTPLLWLFE 133


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 124 ATTPLLWLFE 133


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 124 ATTPLLWLFE 133


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 124 ATTPLLWLFE 133


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 124 ATTPLLWLFE 133


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 124 ATTPLLWLFE 133


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   AMTPFFWLFE 10
           A TP  WLFE
Sbjct: 124 ATTPLLWLFE 133


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   AMTPFFWLFE 10
           AMTP  W+FE
Sbjct: 137 AMTPNLWVFE 146


>sp|GNGF_NOSS1|PUTATIVE gluconeogenesis factor|Nostoc sp. (strain PCC 7120

Query: 2  MTPFFWLFE 10
          +TP FWL E
Sbjct: 62 LTPIFWLLE 70




41|Sequence|201|210|FWLFEEREKM

>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   FWLFEEREKM 10
           FW+FEEREKM
Sbjct: 126 FWMFEEREKM 135


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 127 LWLFEEREKI 136


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 128 LWLFEEREKI 137


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   FWLFEEREKM 10
            W+FEEREK+
Sbjct: 133 LWIFEEREKI 142


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 128 LWLFEEREKI 137


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 128 LWLFEEREKI 137


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   FWLFEEREKM 10
            W+FEEREK+
Sbjct: 134 LWMFEEREKI 143


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   FWLFEEREKM 10
            W+FEEREK+
Sbjct: 134 LWMFEEREKI 143


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   FWLFEEREKM 10
            W+FEEREK+
Sbjct: 131 LWMFEEREKI 140


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   FWLFEEREKM 10
            W+FEEREK+
Sbjct: 131 LWMFEEREKI 140


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   FWLFEEREKM 10
            W+FEERE++
Sbjct: 136 LWMFEERERL 145


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   FWLFEEREKM 10
            W+FEEREK+
Sbjct: 131 LWMFEEREKI 140


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   FWLFEEREKM 10
            W+FEEREK+
Sbjct: 131 LWMFEEREKI 140


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 2   WLFEEREKM 10
           W FEEREK+
Sbjct: 128 WCFEEREKL 136


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 129 LWLFEEREKI 138


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 129 LWLFEEREKI 138


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 129 LWLFEEREKI 138


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 127 LWLFEEREKI 136


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 129 LWLFEEREKI 138


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 129 LWLFEEREKI 138


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 129 LWLFEEREKI 138


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 129 LWLFEEREKI 138


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 129 LWLFEEREKI 138


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   FWLFEEREKM 10
            WLFEEREK+
Sbjct: 129 LWLFEEREKI 138


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 147 LWGFEEREKL 156


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 2   WLFEEREKM 10
           W FEEREK+
Sbjct: 131 WGFEEREKL 139


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 148 LWGFEEREKL 157


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 132 LWGFEEREKL 141


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 132 LWGFEEREKL 141


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 142 LWGFEEREKL 151


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 139 LWGFEEREKL 148


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 138 LWGFEEREKL 147


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 136 LWGFEEREKL 145


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 136 LWGFEEREKL 145


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 152 LWGFEEREKL 161


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 134 LWGFEEREKL 143


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 136 LWGFEEREKL 145


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 142 LWGFEEREKL 151


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 150 LWGFEEREKL 159


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 136 LWGFEEREKL 145


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 132 LWGFEEREKL 141


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 140 LWGFEEREKL 149


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 135 LWGFEEREKL 144


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 141 LWGFEEREKL 150


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 134 LWGFEEREKL 143


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 139 LWGFEEREKL 148


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 136 LWGFEEREKL 145


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 149 LWGFEEREKL 158


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 141 LWGFEEREKL 150


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 139 LWGFEEREKL 148


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   FWLFEEREKM 10
            W FEEREK+
Sbjct: 130 LWGFEEREKL 139




42|Sequence|206|215|EREKMFEFYE

>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   EREKMFEFYE 10
           EREK+ EFYE
Sbjct: 159 EREKLIEFYE 168


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   EREKMFEFYE 10
           EREK+ EFYE
Sbjct: 135 EREKLMEFYE 144


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   EREKMFEFYE 10
           EREKM  FYE
Sbjct: 131 EREKMLSFYE 140


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   EREKMFEFYE 10
           EREK+ EFYE
Sbjct: 133 EREKILEFYE 142


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   EREKMFEFYE 10
           EREK+ EFYE
Sbjct: 133 EREKILEFYE 142


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   EREKMFEFYE 10
           EREK+ EFYE
Sbjct: 133 EREKILEFYE 142


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   EREKMFEFYE 10
           EREK+ EF+E
Sbjct: 143 EREKLLEFHE 152


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   EREKMFEFYE 10
           EREK+ EFYE
Sbjct: 132 EREKIMEFYE 141




43|Sequence|211|220|FEFYERVSGA

>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 2   EFYERVSGA 10
           EFYERVSG+
Sbjct: 138 EFYERVSGS 146


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 2   EFYERVSGA 10
           EFYERVSG+
Sbjct: 138 EFYERVSGS 146


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 2   EFYERVSGA 10
           EFYERVSG+
Sbjct: 140 EFYERVSGS 148


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 2   EFYERVSGA 10
           EFYERVSG+
Sbjct: 140 EFYERVSGS 148


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 2   EFYERVSGA 10
           EFYERVSG+
Sbjct: 140 EFYERVSGS 148


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 2   EFYERVSGA 10
           EFYERVSG+
Sbjct: 140 EFYERVSGS 148


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 2   EFYERVSGA 10
           EFYERVSG+
Sbjct: 140 EFYERVSGS 148


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 2   EFYERVSGA 10
           EFYERVSG+
Sbjct: 145 EFYERVSGS 153


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 2   EFYERVSGA 10
           EFYERVSG+
Sbjct: 145 EFYERVSGS 153


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   FEFYERVSGA 10
            EFYER SGA
Sbjct: 138 LEFYERASGA 147


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   FEFYERVSGA 10
            EFYER SGA
Sbjct: 138 LEFYERASGA 147


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   FEFYERVSGA 10
            EFYER SGA
Sbjct: 138 LEFYERASGA 147


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 2   EFYERVSGA 10
           EFYERV GA
Sbjct: 141 EFYERVCGA 149


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 3   FYERVSGA 10
           FYERVSGA
Sbjct: 146 FYERVSGA 153




44|Sequence|216|225|RVSGARMHAA

>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   RVSGARMHAA 10
           R SGARMHAA
Sbjct: 158 RASGARMHAA 167


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   RVSGARMHAA 10
           R SGARMHAA
Sbjct: 145 RASGARMHAA 154


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   RVSGARMHA 9
           RVSGARMHA
Sbjct: 149 RVSGARMHA 157


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   RVSGARMHA 9
           RVSG+RMHA
Sbjct: 142 RVSGSRMHA 150


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   RVSGARMHAA 10
           R SGARMHAA
Sbjct: 145 RASGARMHAA 154


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 145 VSGARMHAA 153


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   RVSGARMHAA 10
           R SGARMH+A
Sbjct: 155 RASGARMHSA 164


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   RVSGARMHAA 10
           R SGAR+HAA
Sbjct: 164 RASGARLHAA 173


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 145 VSGARMHAA 153


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 145 VSGARMHAA 153


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 145 VSGARMHAA 153


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 154 RASGSRMHAA 163


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 145 VSGARMHAA 153


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 145 VSGARMHAA 153


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 142 RASGSRMHAA 151


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   RVSGARMHAA 10
           R SGAR+HAA
Sbjct: 154 RASGARLHAA 163


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   RVSGARMHAA 10
           R SGAR+HAA
Sbjct: 154 RASGARLHAA 163


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   RVSGARMHAA 10
           R SGAR+HAA
Sbjct: 156 RASGARLHAA 165


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 145 RASGSRMHAA 154


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 145 RASGSRMHAA 154


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 165 RASGSRMHAA 174


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 145 RASGSRMHAA 154


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 147 RASGSRMHAA 156


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 150 RASGSRMHAA 159


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 145 RASGSRMHAA 154


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   RVSGARMHA 9
           R SGARMHA
Sbjct: 145 RASGARMHA 153


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   RVSGARMHA 9
           R SGARMHA
Sbjct: 145 RASGARMHA 153


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 162 VSGARMHAA 170


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 162 VSGARMHAA 170


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 162 VSGARMHAA 170


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 162 VSGARMHAA 170


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 162 VSGARMHAA 170


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 162 VSGARMHAA 170


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 162 VSGARMHAA 170


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 162 VSGARMHAA 170


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 151 RASGSRMHAA 160


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 151 RASGSRMHAA 160


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 162 VSGARMHAA 170


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 162 VSGARMHAA 170


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   RVSGARMHAA 10
           R SGAR+HAA
Sbjct: 157 RASGARLHAA 166


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   RVSGARMHAA 10
           R SGARMH A
Sbjct: 155 RASGARMHMA 164


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 2   VSGARMHAA 10
           VSGARMHAA
Sbjct: 144 VSGARMHAA 152


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   RVSGARMHAA 10
           R SGAR HAA
Sbjct: 143 RASGARFHAA 152


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   RVSGARMHA 9
           R SGARMHA
Sbjct: 145 RASGARMHA 153


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   RVSGARMHAA 10
           R SGAR HAA
Sbjct: 143 RASGARFHAA 152


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   RVSGARMHAA 10
           R SGAR HAA
Sbjct: 143 RASGARFHAA 152


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 2   VSGARMHA 9
           VSGARMHA
Sbjct: 144 VSGARMHA 151


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 2   VSGARMHAA 10
           +SGARMHAA
Sbjct: 162 ISGARMHAA 170


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 2   VSGARMHAA 10
           +SGARMHAA
Sbjct: 162 ISGARMHAA 170


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 2   VSGARMHAA 10
           +SGARMHAA
Sbjct: 162 ISGARMHAA 170


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 2   VSGARMHAA 10
           +SGARMHAA
Sbjct: 162 ISGARMHAA 170


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   RVSGARMHAA 10
           R  GARMHAA
Sbjct: 145 RACGARMHAA 154


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   RVSGARMHAA 10
           R  GARMHAA
Sbjct: 145 RACGARMHAA 154


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   RVSGARMHAA 10
           R  GARMHAA
Sbjct: 145 RACGARMHAA 154


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   RVSGARMHAA 10
           R  GARMHAA
Sbjct: 145 RACGARMHAA 154


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   RVSGARMHAA 10
           R  GARMHAA
Sbjct: 145 RACGARMHAA 154


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   RVSGARMHAA 10
           R  GARMHAA
Sbjct: 145 RACGARMHAA 154


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   RVSGARMHAA 10
           R  GARMHAA
Sbjct: 145 RACGARMHAA 154


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   RVSGARMHAA 10
           R  GARMHAA
Sbjct: 145 RACGARMHAA 154


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   RVSGARMHAA 10
           R  GARMHAA
Sbjct: 145 RACGARMHAA 154


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 2   VSGARMHA 9
           VSGARMHA
Sbjct: 144 VSGARMHA 151


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 2   VSGARMHA 9
           VSGARMHA
Sbjct: 144 VSGARMHA 151


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 2   VSGARMHA 9
           VSGARMHA
Sbjct: 144 VSGARMHA 151


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 2   VSGARMHA 9
           VSGARMHA
Sbjct: 144 VSGARMHA 151


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 2   VSGARMHA 9
           VSGARMHA
Sbjct: 144 VSGARMHA 151


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   RVSGARMHAA 10
           R SGAR HAA
Sbjct: 151 RASGARFHAA 160


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 2   VSGARMHA 9
           VSGARMHA
Sbjct: 144 VSGARMHA 151


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   RVSGARMHAA 10
           R SGARMH+A
Sbjct: 157 RASGARMHSA 166


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 2   VSGARMHA 9
           VSGARMHA
Sbjct: 144 VSGARMHA 151


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 2   VSGARMHAA 10
           VSGAR+HAA
Sbjct: 144 VSGARLHAA 152


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 145 RASGSRMHAA 154


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 153 RASGSRMHAA 162


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 145 RASGSRMHAA 154


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 2   VSGARMHA 9
           VSGARMHA
Sbjct: 144 VSGARMHA 151


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 2   VSGARMHA 9
           VSGARMHA
Sbjct: 144 VSGARMHA 151


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 153 RASGSRMHAA 162


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   RVSGARMHAA 10
           R SG+RMHAA
Sbjct: 151 RASGSRMHAA 160




45|Sequence|221|230|RMHAAYIRPG

>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   RMHAAYIRPG 10
           RMHAAYIRPG
Sbjct: 150 RMHAAYIRPG 159


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   RMHAAYIRPG 10
           RMHAAY+RPG
Sbjct: 150 RMHAAYVRPG 159


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   RMHAAYIRPG 10
           RMH+AY+RPG
Sbjct: 150 RMHSAYVRPG 159


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 149 RMHAAYFRPG 158


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 149 RMHAAYFRPG 158


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 149 RMHAAYFRPG 158


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 158 RMHAAYFRPG 167


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 149 RMHAAYFRPG 158


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 149 RMHAAYFRPG 158


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 149 RMHAAYFRPG 158


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   RMHAAYIRPG 10
           R HAAYIRPG
Sbjct: 146 RFHAAYIRPG 155


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 158 RMHAAYFRPG 167


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 150 RMHAAYFRPG 159


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 147 RMHAAYFRPG 156


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYFRPG 157


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   RMHAAYIRPG 10
           R HAAYIRPG
Sbjct: 148 RFHAAYIRPG 157


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   RMHAAYIRPG 10
           R HAAYIRPG
Sbjct: 148 RFHAAYIRPG 157


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   RMHAAYIRPG 10
           R HAAYIRPG
Sbjct: 148 RFHAAYIRPG 157


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   RMHAAYIRPG 10
           R HAAYIRPG
Sbjct: 156 RFHAAYIRPG 165


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 147 RMHANYFRPG 156


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 166 RMHAAYYRPG 175


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   RMHAAYIRPG 10
           RMHAAY RPG
Sbjct: 148 RMHAAYYRPG 157


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   RMHAAYIRPG 10
           RMH+AY RPG
Sbjct: 162 RMHSAYFRPG 171


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 169 RLHAAYFRPG 178


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 161 RLHAAYFRPG 170


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 159 RLHAAYFRPG 168


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 160 RLHAAYFRPG 169


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 159 RLHAAYFRPG 168


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 161 RLHAAYFRPG 170


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   RMHAAYIRPG 10
           R H+AYIRPG
Sbjct: 151 RFHSAYIRPG 160


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 162 RLHAAYFRPG 171


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 162 RLHAAYFRPG 171


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 168 RLHAAYFRPG 177


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 168 RLHAAYFRPG 177


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   RMHAAYIRPG 10
           R H+AYIRPG
Sbjct: 151 RFHSAYIRPG 160


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   RMHAAYIRPG 10
           R H+AYIRPG
Sbjct: 153 RFHSAYIRPG 162


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   RMHAAYIRPG 10
           R H+AYIRPG
Sbjct: 151 RFHSAYIRPG 160


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   RMHAAYIRPG 10
           RMHAA+ RPG
Sbjct: 163 RMHAAWFRPG 172


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   RMHAAYIRPG 10
           R H+AYIRPG
Sbjct: 151 RFHSAYIRPG 160


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   RMHAAYIRPG 10
           RMHAA+ RPG
Sbjct: 150 RMHAAWFRPG 159


>sp|NUOD_MYCPA|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium paratuberculosis (strain

Query: 1   RMHAAYIRPG 10
           RM++AYIRPG
Sbjct: 183 RMNSAYIRPG 192


>sp|NUOD_MYCA1|NADH-QUINONE oxidoreductase subunit D|Mycobacterium avium (strain 104)

Query: 1   RMHAAYIRPG 10
           RM++AYIRPG
Sbjct: 183 RMNSAYIRPG 192


>sp|NUOD_MYCGI|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium gilvum (strain PYR-GCK)

Query: 1   RMHAAYIRPG 10
           RM++AYIRPG
Sbjct: 190 RMNSAYIRPG 199


>sp|NUOD_MYCTU|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain ATCC

Query: 1   RMHAAYIRPG 10
           RM++AYIRPG
Sbjct: 182 RMNSAYIRPG 191


>sp|NUOD_MYCTO|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain CDC

Query: 1   RMHAAYIRPG 10
           RM++AYIRPG
Sbjct: 182 RMNSAYIRPG 191


>sp|NUOD_MYCTA|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain ATCC

Query: 1   RMHAAYIRPG 10
           RM++AYIRPG
Sbjct: 182 RMNSAYIRPG 191


>sp|NUOD_MYCBP|NADH-QUINONE oxidoreductase subunit D|Mycobacterium bovis (strain BCG /

Query: 1   RMHAAYIRPG 10
           RM++AYIRPG
Sbjct: 182 RMNSAYIRPG 191


>sp|NUOD_MYCBO|NADH-QUINONE oxidoreductase subunit D|Mycobacterium bovis (strain ATCC BAA-935

Query: 1   RMHAAYIRPG 10
           RM++AYIRPG
Sbjct: 182 RMNSAYIRPG 191


>sp|NUOD_MYCUA|NADH-QUINONE oxidoreductase subunit D|Mycobacterium ulcerans (strain Agy99)

Query: 1   RMHAAYIRPG 10
           RM++AYIRPG
Sbjct: 174 RMNSAYIRPG 183


>sp|NUOD_MYCMM|NADH-QUINONE oxidoreductase subunit D|Mycobacterium marinum (strain ATCC BAA-535

Query: 1   RMHAAYIRPG 10
           RM++AYIRPG
Sbjct: 174 RMNSAYIRPG 183


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   RMHAAYIRPG 10
           RMH+ Y RPG
Sbjct: 147 RMHSNYFRPG 156


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 155 RMHANYFRPG 164


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   RMHAAYIRPG 10
           RMH+ Y RPG
Sbjct: 149 RMHSNYFRPG 158


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 154 RMHANYFRPG 163


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 150 RMHANYFRPG 159


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_RHOJR|NADH-QUINONE oxidoreductase subunit D|Rhodococcus jostii (strain RHA1)

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 180 RMNHAYIRPG 189


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 148 RLHAAYYRPG 157


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   RMHAAYIRPG 10
           R+HAAY RPG
Sbjct: 148 RLHAAYYRPG 157


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   RMHAAYIRPG 10
           RMH+ Y RPG
Sbjct: 149 RMHSNYFRPG 158


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   RMHAAYIRPG 10
           RMH+ Y RPG
Sbjct: 149 RMHSNYFRPG 158


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 148 RMHATYYRPG 157


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   RMHAAYIRPG 10
           RMH+A+ RPG
Sbjct: 160 RMHSAWFRPG 169


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 156 RMHAHYFRPG 165


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   RMHAAYIRPG 10
           RMHA Y RPG
Sbjct: 167 RMHATYYRPG 176


>sp|NUOD_MYCVP|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium vanbaalenii (strain DSM

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 181 RMNNAYIRPG 190


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   RMHAAYIRPG 10
           RMH+ Y RPG
Sbjct: 149 RMHSNYFRPG 158


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   RMHAAYIRPG 10
           RMH+ Y RPG
Sbjct: 149 RMHSNYFRPG 158


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   RMHAAYIRPG 10
           RMH+ Y RPG
Sbjct: 149 RMHSNYFRPG 158


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   RMHAAYIRPG 10
           RMH+ Y RPG
Sbjct: 149 RMHSNYFRPG 158


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   RMHAAYIRPG 10
           RMH+ Y RPG
Sbjct: 149 RMHSNYFRPG 158


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   RMHAAYIRPG 10
           RMH+ Y RPG
Sbjct: 149 RMHSNYFRPG 158


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 154 RLHANYFRPG 163


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 154 RLHANYFRPG 163


>sp|NUOD2_STRCO|NADH-QUINONE oxidoreductase subunit D 2|Streptomyces coelicolor (strain ATCC

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 182 RMNHAYIRPG 191


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 185 RMNHAYIRPG 194


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 172 RLHANYFRPG 181


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 150 RLHANYFRPG 159


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 150 RLHANYFRPG 159


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 150 RLHANYFRPG 159


>sp|NUOD_PARS2|NADH-QUINONE oxidoreductase subunit D|Parafrankia sp. (strain EAN1pec)

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 199 RMNHAYIRPG 208


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 168 RLHANYFRPG 177


>sp|NUOD_FRACC|NADH-QUINONE oxidoreductase subunit D|Frankia casuarinae (strain DSM 45818

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 224 RMNHAYIRPG 233


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 150 RLHANYFRPG 159


>sp|NUOD_NOCFA|NADH-QUINONE oxidoreductase subunit D|Nocardia farcinica (strain IFM 10152)

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 195 RMNHAYIRPG 204


>sp|NUOD_MYCS2|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium smegmatis (strain ATCC

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 184 RMNHAYIRPG 193


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 150 RLHANYFRPG 159


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 150 RLHANYFRPG 159


>sp|NUOD_THEFY|NADH-QUINONE oxidoreductase subunit D|Thermobifida fusca (strain YX)

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 174 RMNHAYIRPG 183


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 150 RLHANYFRPG 159


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   RMHAAYIRPG 10
           R+HA Y RPG
Sbjct: 150 RLHANYFRPG 159


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   RMHAAYIRPG 10
           RMH A+ RPG
Sbjct: 160 RMHMAWFRPG 169


>sp|NUOD_ACIC1|NADH-QUINONE oxidoreductase subunit D|Acidothermus cellulolyticus (strain ATCC

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 182 RMNHAYIRPG 191


>sp|NUOD_MYCSS|NADH-QUINONE oxidoreductase subunit D|Mycobacterium sp. (strain MCS)

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 188 RMNHAYIRPG 197


>sp|NUOD_MYCSK|NADH-QUINONE oxidoreductase subunit D|Mycobacterium sp. (strain KMS)

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 188 RMNHAYIRPG 197


>sp|NUOD_MYCSJ|NADH-QUINONE oxidoreductase subunit D|Mycobacterium sp. (strain JLS)

Query: 1   RMHAAYIRPG 10
           RM+ AYIRPG
Sbjct: 188 RMNHAYIRPG 197


>sp|NUOD1_SALAI|NADH-QUINONE oxidoreductase subunit D 1|Salinispora arenicola (strain CNS-205)

Query: 1   RMHAAYIRPG 10
           RM+ AY+RPG
Sbjct: 183 RMNHAYVRPG 192


>sp|NUOD1_SALTO|NADH-QUINONE oxidoreductase subunit D 1|Salinispora tropica (strain ATCC BAA-916

Query: 1   RMHAAYIRPG 10
           RM+ AY+RPG
Sbjct: 183 RMNHAYVRPG 192


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   RMHAAYIRPG 10
           RMHAAY R G
Sbjct: 170 RMHAAYFRVG 179


>sp|NUOD_MYCA9|NADH-QUINONE oxidoreductase subunit D|Mycobacteroides abscessus (strain ATCC

Query: 1   RMHAAYIRPG 10
           RM+ AY+RPG
Sbjct: 174 RMNHAYVRPG 183


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   RMHAAYIRPG 10
           RMHAAY R G
Sbjct: 156 RMHAAYFRVG 165


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   RMHAAYIRPG 10
           RMHAAY R G
Sbjct: 156 RMHAAYFRVG 165




46|Sequence|226|235|YIRPGGVHQD

>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   YIRPGGVHQD 10
           YIRPGGVHQD
Sbjct: 155 YIRPGGVHQD 164


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 177 YFRPGGVHQD 186


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 161 YFRPGGVHQD 170


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   YIRPGGVHQD 10
           Y+RPGGVHQD
Sbjct: 155 YVRPGGVHQD 164


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   YIRPGGVHQD 10
           Y+RPGGVHQD
Sbjct: 155 YVRPGGVHQD 164


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 167 YFRPGGVHQD 176


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 173 YFRPGGVHQD 182


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 163 YFRPGGVHQD 172


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 166 YFRPGGVHQD 175


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 164 YFRPGGVHQD 173


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 165 YFRPGGVHQD 174


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 173 YFRPGGVHQD 182


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 163 YFRPGGVHQD 172


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 173 YFRPGGVHQD 182


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 164 YFRPGGVHQD 173


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 174 YFRPGGVHQD 183


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 166 YFRPGGVHQD 175


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 159 YFRPGGVHQD 168


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 167 YFRPGGVHQD 176


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 167 YFRPGGVHQD 176


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 155 YFRPGGVHQD 164


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   YIRPGGVHQD 10
           Y RPGGVHQD
Sbjct: 152 YFRPGGVHQD 161


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   YIRPGGVHQD 10
           + RPGGVHQD
Sbjct: 168 WFRPGGVHQD 177


>sp|NUOD_THEFY|NADH-QUINONE oxidoreductase subunit D|Thermobifida fusca (strain YX)

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 179 YIRPGGVAQD 188


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   YIRPGGVHQD 10
           + RPGGVHQD
Sbjct: 165 WFRPGGVHQD 174


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   YIRPGGVHQD 10
           + RPGGVHQD
Sbjct: 165 WFRPGGVHQD 174


>sp|NUOD1_SALAI|NADH-QUINONE oxidoreductase subunit D 1|Salinispora arenicola (strain CNS-205)

Query: 1   YIRPGGVHQD 10
           Y+RPGGV QD
Sbjct: 188 YVRPGGVAQD 197


>sp|NUOD_MYCTU|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain ATCC

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 187 YIRPGGVAQD 196


>sp|NUOD_MYCTO|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain CDC

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 187 YIRPGGVAQD 196


>sp|NUOD_MYCTA|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain ATCC

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 187 YIRPGGVAQD 196


>sp|NUOD_MYCBP|NADH-QUINONE oxidoreductase subunit D|Mycobacterium bovis (strain BCG /

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 187 YIRPGGVAQD 196


>sp|NUOD_MYCBO|NADH-QUINONE oxidoreductase subunit D|Mycobacterium bovis (strain ATCC BAA-935

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 187 YIRPGGVAQD 196


>sp|NUOD_MYCPA|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium paratuberculosis (strain

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 188 YIRPGGVAQD 197


>sp|NUOD_MYCA1|NADH-QUINONE oxidoreductase subunit D|Mycobacterium avium (strain 104)

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 188 YIRPGGVAQD 197


>sp|NUOD_MYCUA|NADH-QUINONE oxidoreductase subunit D|Mycobacterium ulcerans (strain Agy99)

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 179 YIRPGGVAQD 188


>sp|NUOD_MYCMM|NADH-QUINONE oxidoreductase subunit D|Mycobacterium marinum (strain ATCC BAA-535

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 179 YIRPGGVAQD 188


>sp|NUOD1_SALTO|NADH-QUINONE oxidoreductase subunit D 1|Salinispora tropica (strain ATCC BAA-916

Query: 1   YIRPGGVHQD 10
           Y+RPGGV QD
Sbjct: 188 YVRPGGVAQD 197


>sp|NUOD_HELMI|NADH-QUINONE oxidoreductase subunit D|Heliobacterium modesticaldum (strain ATCC

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 152 YIRPGGVAQD 161


>sp|NUOD_RHOJR|NADH-QUINONE oxidoreductase subunit D|Rhodococcus jostii (strain RHA1)

Query: 1   YIRPGGVHQD 10
           YIRPGG+ QD
Sbjct: 185 YIRPGGLSQD 194


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 154 YFRAGGVHQD 163


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   YIRPGGVHQD 10
           Y RPGGV QD
Sbjct: 159 YFRPGGVSQD 168


>sp|NUOD_ACIC1|NADH-QUINONE oxidoreductase subunit D|Acidothermus cellulolyticus (strain ATCC

Query: 1   YIRPGGVHQD 10
           YIRPGGV QD
Sbjct: 187 YIRPGGVIQD 196


>sp|NUOD_FRACC|NADH-QUINONE oxidoreductase subunit D|Frankia casuarinae (strain DSM 45818

Query: 1   YIRPGGVHQD 10
           YIRPGG+ QD
Sbjct: 229 YIRPGGLAQD 238


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   YIRPGGVHQD 10
           Y RPGGVH+D
Sbjct: 153 YYRPGGVHRD 162


>sp|NUOD_PARS2|NADH-QUINONE oxidoreductase subunit D|Parafrankia sp. (strain EAN1pec)

Query: 1   YIRPGGVHQD 10
           YIRPGG+ QD
Sbjct: 204 YIRPGGLAQD 213


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1   YIRPGGVHQD 10
           YIRPGG+ QD
Sbjct: 190 YIRPGGLAQD 199


>sp|NUOD2_STRCO|NADH-QUINONE oxidoreductase subunit D 2|Streptomyces coelicolor (strain ATCC

Query: 1   YIRPGGVHQD 10
           YIRPGG+ QD
Sbjct: 187 YIRPGGLAQD 196


>sp|NUOD_NOCSJ|NADH-QUINONE oxidoreductase subunit D|Nocardioides sp. (strain ATCC BAA-499

Query: 1   YIRPGGVHQD 10
           +IRPGGV QD
Sbjct: 190 FIRPGGVAQD 199


>sp|NUOD_NOCFA|NADH-QUINONE oxidoreductase subunit D|Nocardia farcinica (strain IFM 10152)

Query: 1   YIRPGGVHQD 10
           YIRPGG+ QD
Sbjct: 200 YIRPGGLAQD 209


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   YIRPGGVHQD 10
           Y RPGGV QD
Sbjct: 159 YFRPGGVAQD 168


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   YIRPGGVHQD 10
           Y RPGGVH D
Sbjct: 155 YFRPGGVHID 164


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YFRPGGVYRD 162


>sp|NUOD_MYCA9|NADH-QUINONE oxidoreductase subunit D|Mycobacteroides abscessus (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y+RPGG+ QD
Sbjct: 179 YVRPGGLAQD 188


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YFRPGGVYRD 162


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 154 YFRPGGVYRD 163


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   YIRPGGVHQD 10
           YIRPGGV  D
Sbjct: 156 YIRPGGVAAD 165


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   YIRPGGVHQD 10
           YIRPGGV  D
Sbjct: 156 YIRPGGVAAD 165


>sp|NUOD_SACEN|NADH-QUINONE oxidoreductase subunit D|Saccharopolyspora erythraea (strain ATCC

Query: 1   YIRPGGVHQD 10
           ++RPGGV QD
Sbjct: 196 FVRPGGVAQD 205


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   YIRPGGVHQD 10
           YIRPGGV  D
Sbjct: 156 YIRPGGVAAD 165


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 155 YFRVGGVHQD 164


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 155 YFRVGGVHQD 164


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 155 YFRVGGVHQD 164


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 175 YFRVGGVHQD 184


>sp|NUOD_MYCGI|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium gilvum (strain PYR-GCK)

Query: 1   YIRPGGVHQD 10
           YIRPGGV  D
Sbjct: 195 YIRPGGVAAD 204


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YFRPGGVYRD 162


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 171 YYRPGGVYRD 180


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 154 YFRPGGVYRD 163


>sp|CHEB_GEOKA|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Geobacillus

Query: 1   YIRPGGVH 8
           YI PGGVH
Sbjct: 231 YIAPGGVH 238


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 161 YFRVGGVHQD 170


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 161 YFRVGGVHQD 170


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YFRPGGVYRD 162


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 160 YFRIGGVHQD 169


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 154 YFRPGGVYRD 163


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 154 YFRPGGVYRD 163


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 154 YFRPGGVYRD 163


>sp|NUOD_MYCVP|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium vanbaalenii (strain DSM

Query: 1   YIRPGGVHQD 10
           YIRPGGV  D
Sbjct: 186 YIRPGGVAAD 195


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YFRPGGVYRD 162


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 161 YFRIGGVHQD 170


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 154 YFRPGGVYRD 163


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YFRPGGVYRD 162


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YFRPGGVYRD 162


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YFRPGGVYRD 162


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YFRPGGVYRD 162


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 152 YFRPGGVAED 161


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YFRPGGVYRD 162


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   YIRPGGVHQD 10
           YIRPGGV  D
Sbjct: 156 YIRPGGVAAD 165


>sp|NUOD_FRAAA|NADH-QUINONE oxidoreductase subunit D|Frankia alni (strain DSM 45986

Query: 1   YIRPGGVHQD 10
           +IRPGG+ QD
Sbjct: 217 FIRPGGLAQD 226


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 157 YFRIGGVHQD 166


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 161 YFRIGGVHQD 170


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 157 YFRIGGVHQD 166


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 154 YFRPGGVAED 163


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   YIRPGGVHQD 10
           YIRPGGV  D
Sbjct: 153 YIRPGGVAAD 162


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   YIRPGGVHQD 10
           Y R GGVHQD
Sbjct: 155 YFRIGGVHQD 164


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 152 YFRPGGVAED 161


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 154 YFRPGGVAED 163


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   YIRPGGVHQD 10
           YIRPGG+  D
Sbjct: 153 YIRPGGIAAD 162


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YYRPGGVYRD 162


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 154 YFRPGGVAED 163


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 154 YFRPGGVAED 163


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 154 YFRPGGVAED 163


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 153 YFRPGGVARD 162


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 153 YFRPGGVARD 162


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 153 YFRPGGVARD 162


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 153 YFRPGGVARD 162


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 153 YFRPGGVARD 162


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 153 YFRPGGVARD 162


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 153 YFRPGGVARD 162


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 153 YFRPGGVARD 162


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 179 YFRPGGVSRD 188


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   YIRPGGVHQD 10
           YIRPGG+  D
Sbjct: 161 YIRPGGIAAD 170


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 153 YFRPGGVARD 162


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   YIRPGGVHQD 10
           Y RPGGV +D
Sbjct: 169 YFRPGGVSKD 178


>sp|NUOD1_STRGG|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces griseus subsp. griseus

Query: 1   YIRPGGVHQD 10
           ++RPGG+ QD
Sbjct: 187 FVRPGGLAQD 196


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YYRPGGVYRD 162


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YYRPGGVYRD 162


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   YIRPGGVHQD 10
           Y RPGGV++D
Sbjct: 153 YYRPGGVYRD 162




47|Sequence|231|240|GVHQDLPLGL

>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   GVHQDLPLGL 10
           GVHQDLP+GL
Sbjct: 159 GVHQDLPMGL 168


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   GVHQDLPLGL 10
           GVHQDLP+ L
Sbjct: 166 GVHQDLPMKL 175


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   GVHQDLPLGL 10
           GVHQDLP GL
Sbjct: 160 GVHQDLPPGL 169


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   GVHQDLPLGL 10
           GVHQD+PL L
Sbjct: 173 GVHQDVPLKL 182


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   GVHQDLPLGL 10
           GVHQD+PL L
Sbjct: 170 GVHQDVPLKL 179


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   GVHQDLPLGL 10
           GVHQDLP  L
Sbjct: 168 GVHQDLPRAL 177


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   GVHQDLPLGL 10
           GVHQDLP  L
Sbjct: 160 GVHQDLPPAL 169


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   GVHQDLP 7
           GVHQDLP
Sbjct: 165 GVHQDLP 171


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   GVHQDLP 7
           GVHQDLP
Sbjct: 178 GVHQDLP 184


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   GVHQDLPLGL 10
           GVHQDLP  L
Sbjct: 160 GVHQDLPPAL 169


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   GVHQDLP 7
           GVHQDLP
Sbjct: 164 GVHQDLP 170


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   GVHQDLPLGL 10
           GVHQDLP  L
Sbjct: 172 GVHQDLPPAL 181


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   GVHQDLPLGL 10
           GVHQDLP  L
Sbjct: 160 GVHQDLPESL 169


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   GVHQDLPLGL 10
           GVHQDLP  L
Sbjct: 160 GVHQDLPESL 169


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   GVHQDLPLGL 10
           GVHQDLP  L
Sbjct: 160 GVHQDLPESL 169


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   GVHQDLP 7
           GVHQDLP
Sbjct: 180 GVHQDLP 186


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   GVHQDLP 7
           GVHQDLP
Sbjct: 166 GVHQDLP 172


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   GVHQDLP 7
           GVHQDLP
Sbjct: 160 GVHQDLP 166


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   GVHQDLP 7
           GVHQDLP
Sbjct: 179 GVHQDLP 185


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   GVHQDLP 7
           GVHQDLP
Sbjct: 160 GVHQDLP 166


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   GVHQDLP 7
           GVHQDLP
Sbjct: 178 GVHQDLP 184




48|Sequence|236|245|LPLGLMDDIY

 ***** No hits found ******


49|Sequence|241|250|MDDIYQFSKN

 ***** No hits found ******


50|Sequence|246|255|QFSKNFSLRL

 ***** No hits found ******


51|Sequence|251|260|FSLRLDELEE

 ***** No hits found ******


52|Sequence|256|265|DELEELLTNN

>sp|NUOD2_SOLUE|NADH-QUINONE oxidoreductase subunit D 2|Solibacter usitatus (strain Ellin6076)

Query: 1   DELEELLTNN 10
           DE EELLTNN
Sbjct: 188 DEYEELLTNN 197


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   DELEELLTNN 10
           D+LE LLTNN
Sbjct: 209 DDLESLLTNN 218


>sp|NUOD1_HERA2|NADH-QUINONE oxidoreductase subunit D 1|Herpetosiphon aurantiacus (strain ATCC

Query: 1   DELEELLTNN 10
           DE E+LLTNN
Sbjct: 212 DEYEDLLTNN 221


>sp|NUOD_MYXXD|NADH-QUINONE oxidoreductase subunit D|Myxococcus xanthus (strain DK1622)

Query: 1   DELEELLTNN 10
           DE+E LLTNN
Sbjct: 208 DEMEGLLTNN 217




53|Sequence|261|270|LLTNNRIWRN

>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   LLTNNRIWR 9
           LLTNNRIW+
Sbjct: 195 LLTNNRIWK 203


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   LLTNNRIWR 9
           LLTNNRIW+
Sbjct: 214 LLTNNRIWK 222


>sp|NUOD2_SOLUE|NADH-QUINONE oxidoreductase subunit D 2|Solibacter usitatus (strain Ellin6076)

Query: 1   LLTNNRIW 8
           LLTNNRIW
Sbjct: 193 LLTNNRIW 200


>sp|NUOD1_SOLUE|NADH-QUINONE oxidoreductase subunit D 1|Solibacter usitatus (strain Ellin6076)

Query: 1   LLTNNRIW 8
           LLTNNRIW
Sbjct: 207 LLTNNRIW 214


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT NRIWR
Sbjct: 213 LLTENRIWR 221


>sp|NUOD_NITSB|NADH-QUINONE oxidoreductase subunit D|Nitratiruptor sp. (strain SB155-2)

Query: 1   LLTNNRIWR 9
           LLT NRIWR
Sbjct: 206 LLTENRIWR 214


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 194 LLTDNRIWK 202


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 194 LLTDNRIWK 202


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 214 LLTDNRIWK 222


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 231 LLTDNRIWK 239


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 232 LLTDNRIWK 240


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   LLTNNRIWR 9
           LLT+NRIW+
Sbjct: 213 LLTDNRIWK 221


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 231 LLTENRIWK 239


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 231 LLTENRIWK 239


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 231 LLTENRIWK 239


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 188 LLTENRIWK 196


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 188 LLTENRIWK 196


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 188 LLTENRIWK 196


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 213 LLTENRIWK 221


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 191 LLTENRIWK 199


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 191 LLTENRIWK 199


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 191 LLTENRIWK 199


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   LLTNNRIWR 9
           LLT NRIW+
Sbjct: 191 LLTENRIWK 199


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   LLTNNRIWR 9
           LLT+NR+W+
Sbjct: 213 LLTDNRLWK 221


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   LLTNNRIWR 9
           LLT+NR+W+
Sbjct: 213 LLTDNRLWK 221


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   LLTNNRIWR 9
           LLT+NR+W+
Sbjct: 213 LLTDNRLWK 221


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   LLTNNRIWR 9
           LLT+NR+W+
Sbjct: 213 LLTDNRLWK 221


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   LLTNNRIWR 9
           LLT+NR+W+
Sbjct: 213 LLTDNRLWK 221


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   LLTNNRIWR 9
           LLT+NR+W+
Sbjct: 213 LLTDNRLWK 221


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   LLTNNRIWR 9
           LLT+NR+W+
Sbjct: 213 LLTDNRLWK 221


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   LLTNNRIWR 9
           LLT+NR+W+
Sbjct: 213 LLTDNRLWK 221


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   LLTNNRIWR 9
           LLT+NR+W+
Sbjct: 213 LLTDNRLWK 221




54|Sequence|266|275|RIWRNRTIDI

>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   RIWRNRTIDI 10
           RIW+ RT+DI
Sbjct: 218 RIWKQRTVDI 227


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   RIWRNRTIDI 10
           RIW+ RT+DI
Sbjct: 199 RIWKQRTVDI 208


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   RIWRNRTIDI 10
           RIW+ RT+DI
Sbjct: 199 RIWKQRTVDI 208


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   RIWRNRTIDI 10
           RIW+ RT+DI
Sbjct: 218 RIWKQRTVDI 227


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   RIWRNRTIDI 10
           RIW+ RT+D+
Sbjct: 236 RIWKQRTVDV 245


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   RIWRNRTIDI 10
           RIW+ RT+D+
Sbjct: 236 RIWKQRTVDV 245


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   RIWRNRTIDI 10
           RIW+ RT+D+
Sbjct: 236 RIWKQRTVDV 245


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   RIWRNRTIDI 10
           RIW+ RT+D+
Sbjct: 236 RIWKQRTVDV 245


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   RIWRNRTIDI 10
           RIW+ RT+D+
Sbjct: 236 RIWKQRTVDV 245


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   RIWRNRTIDI 10
           RIW+ RT+D+
Sbjct: 236 RIWKQRTVDV 245


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   RIWRNRTIDI 10
           RIW+ RT+D+
Sbjct: 236 RIWKQRTVDV 245


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   RIWRNRTIDI 10
           RIW+ RT+D+
Sbjct: 236 RIWKQRTVDV 245


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   RIWRNRTIDI 10
           R+W+ RT+DI
Sbjct: 218 RLWKQRTVDI 227


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   RIWRNRTIDI 10
           R+W+ RT+DI
Sbjct: 218 RLWKQRTVDI 227


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   RIWRNRTIDI 10
           R+W+ RT+DI
Sbjct: 218 RLWKQRTVDI 227


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   RIWRNRTIDI 10
           R+W+ RT+DI
Sbjct: 218 RLWKQRTVDI 227


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   RIWRNRTIDI 10
           R+W+ RT+DI
Sbjct: 218 RLWKQRTVDI 227


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   RIWRNRTIDI 10
           R+W+ RT+DI
Sbjct: 218 RLWKQRTVDI 227


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   RIWRNRTIDI 10
           R+W+ RT+DI
Sbjct: 218 RLWKQRTVDI 227


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   RIWRNRTIDI 10
           R+W+ RT+DI
Sbjct: 218 RLWKQRTVDI 227


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   RIWRNRTIDI 10
           R+W+ RT+DI
Sbjct: 218 RLWKQRTVDI 227


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   RIWRNRTIDI 10
           RIW+ RT+DI
Sbjct: 218 RIWKQRTVDI 227


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   RIWRNRTIDI 10
           RIW+ RT+DI
Sbjct: 218 RIWKQRTVDI 227


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   RIWRNRTIDI 10
           RIW+ RT+DI
Sbjct: 218 RIWKQRTVDI 227


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   RIWRNRTIDI 10
           RIW+ RT+DI
Sbjct: 218 RIWKQRTVDI 227


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   RIWRNRTIDI 10
           RIWR R +D+
Sbjct: 218 RIWRQRLVDV 227


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   RIWRNRTIDI 10
           RIW+ R +DI
Sbjct: 196 RIWKQRNVDI 205


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   RIWRNRTIDI 10
           RIW+ R +DI
Sbjct: 196 RIWKQRNVDI 205


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   RIWRNRTIDI 10
           RIW+ R +DI
Sbjct: 196 RIWKQRNVDI 205


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   RIWRNRTIDI 10
           RIW+ R +DI
Sbjct: 196 RIWKQRNVDI 205


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   RIWRNRTIDI 10
           RIW+ R +DI
Sbjct: 203 RIWKQRVVDI 212


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   RIWRNRTIDI 10
           RIW+ R +DI
Sbjct: 218 RIWKQRNVDI 227




55|Sequence|271|280|RTIDIGVVTA

>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   RTIDIGVVTA 10
           RT+DIGVVTA
Sbjct: 223 RTVDIGVVTA 232


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   RTIDIGVVTA 10
           RT+DIG VTA
Sbjct: 223 RTVDIGTVTA 232


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   RTIDIGVVTA 10
           RT+DIG VTA
Sbjct: 223 RTVDIGTVTA 232


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   RTIDIGVVTA 10
           RT+DIG VTA
Sbjct: 223 RTVDIGTVTA 232


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   RTIDIGVVTA 10
           RT+DIG VTA
Sbjct: 223 RTVDIGTVTA 232


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   RTIDIGVVTA 10
           RT+DIG VTA
Sbjct: 223 RTVDIGTVTA 232


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   RTIDIGVVTA 10
           RT+DIG VTA
Sbjct: 223 RTVDIGTVTA 232


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   RTIDIGVVTA 10
           RT+DIG VTA
Sbjct: 223 RTVDIGTVTA 232


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   RTIDIGVVTA 10
           RT+DIG VTA
Sbjct: 223 RTVDIGTVTA 232


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   RTIDIGVVT 9
           RT+DIGVVT
Sbjct: 208 RTVDIGVVT 216


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   RTIDIGVVTA 10
           R +DIGVVTA
Sbjct: 223 RNVDIGVVTA 232


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   RTIDIGVVT 9
           RT+DIG+VT
Sbjct: 223 RTVDIGIVT 231


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   RTIDIGVVTA 10
           RT+DIG VTA
Sbjct: 200 RTVDIGKVTA 209




56|Sequence|276|285|GVVTAEEALN

>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   GVVTAEEALN 10
           GVVTAE ALN
Sbjct: 228 GVVTAERALN 237


>sp|NUOD1_THEYD|NADH-QUINONE oxidoreductase subunit D 1|Thermodesulfovibrio yellowstonii (strain

Query: 1   GVVTAEEALN 10
           GV++AEEA+N
Sbjct: 207 GVISAEEAIN 216


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   GVVTAEEALN 10
           GVVTAE A+N
Sbjct: 228 GVVTAERAMN 237


>sp|IF3_FUSNN|TRANSLATION initiation factor IF-3|Fusobacterium nucleatum subsp. nucleatum

Query: 1  GVVTAEEALN 10
          G++TAE+ALN
Sbjct: 46 GIMTAEQALN 55




57|Sequence|281|290|EEALNYGFSG

>sp|NUOD2_CYTH3|NADH-QUINONE oxidoreductase subunit D 2|Cytophaga hutchinsonii (strain ATCC

Query: 1   EEALNYGFSG 10
           E ALNYGF+G
Sbjct: 208 ERALNYGFTG 217


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   EEALNYGFSG 10
           ++ALN+GFSG
Sbjct: 211 KQALNWGFSG 220


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   EEALNYGFSG 10
           ++ALN+GFSG
Sbjct: 211 KQALNWGFSG 220


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   EEALNYGFSG 10
           EEAL +GFSG
Sbjct: 210 EEALEWGFSG 219


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   EEALNYGFSG 10
           EEA+++GFSG
Sbjct: 214 EEAISWGFSG 223


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   EEALNYGFSG 10
           E+AL++GFSG
Sbjct: 211 EQALDWGFSG 220


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   EEALNYGFSG 10
           EE L YGFSG
Sbjct: 222 EEILQYGFSG 231


>sp|NDHH_TRIEI|NAD(P)H-QUINONE oxidoreductase subunit H|Trichodesmium erythraeum (strain IMS101)

Query: 1   EEALNYGFSG 10
           EEA+N+G SG
Sbjct: 213 EEAINWGLSG 222


>sp|NDHH_TRIV2|NAD(P)H-QUINONE oxidoreductase subunit H|Trichormus variabilis (strain ATCC 29413

Query: 1   EEALNYGFSG 10
           EEA+N+G SG
Sbjct: 213 EEAINWGLSG 222


>sp|NDHH_THEVB|NAD(P)H-QUINONE oxidoreductase subunit H|Thermosynechococcus vestitus (strain

Query: 1   EEALNYGFSG 10
           EEA+N+G SG
Sbjct: 213 EEAINWGLSG 222


>sp|NDHH_NOSS1|NAD(P)H-QUINONE oxidoreductase subunit H|Nostoc sp. (strain PCC 7120

Query: 1   EEALNYGFSG 10
           EEA+N+G SG
Sbjct: 213 EEAINWGLSG 222


>sp|NDHH_NOSP7|NAD(P)H-QUINONE oxidoreductase subunit H|Nostoc punctiforme (strain ATCC 29133

Query: 1   EEALNYGFSG 10
           EEA+N+G SG
Sbjct: 213 EEAINWGLSG 222


>sp|NDHH_SYNY3|NAD(P)H-QUINONE oxidoreductase subunit H|Synechocystis sp. (strain ATCC 27184

Query: 1   EEALNYGFSG 10
           EEA+N+G SG
Sbjct: 213 EEAINWGLSG 222


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   EEALNYGFSG 10
           E ALN GFSG
Sbjct: 233 ERALNLGFSG 242




58|Sequence|286|295|YGFSGVMLRG

>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   YGFSGVMLRG 10
           YGFSGVM+RG
Sbjct: 225 YGFSGVMVRG 234


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   YGFSGVMLRG 10
           YGFSGVM+RG
Sbjct: 227 YGFSGVMVRG 236


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   YGFSGVMLRG 10
           +GFSGVMLRG
Sbjct: 219 WGFSGVMLRG 228


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   YGFSGVMLRG 10
           +GFSGVMLRG
Sbjct: 219 WGFSGVMLRG 228


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   YGFSGVMLRG 10
           YGFSGVM+RG
Sbjct: 227 YGFSGVMVRG 236


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   YGFSGVMLRG 10
           +GFSGVMLRG
Sbjct: 215 WGFSGVMLRG 224


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 219 WGFSGVMVRG 228


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 237 WGFSGVMVRG 246


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 217 WGFSGVMVRG 226


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 224 WGFSGVMVRG 233


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 232 WGFSGVMVRG 241


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 224 WGFSGVMVRG 233


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 224 WGFSGVMVRG 233


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 220 WGFSGVMVRG 229


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 226 WGFSGVMVRG 235


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   YGFSGVMLRG 10
           Y FSGVM+RG
Sbjct: 214 YSFSGVMIRG 223


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 235 WGFSGVMVRG 244


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 234 WGFSGVMVRG 243


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 221 WGFSGVMVRG 230


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 221 WGFSGVMVRG 230


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 221 WGFSGVMVRG 230


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 221 WGFSGVMVRG 230


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 217 WGFSGVMVRG 226


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 217 WGFSGVMVRG 226


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 223 WGFSGVMVRG 232


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 221 WGFSGVMVRG 230


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 212 WGFSGVMVRG 221


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 2   GFSGVMLRG 10
           GFSGVM+RG
Sbjct: 216 GFSGVMIRG 224


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 2   GFSGVMLRG 10
           GFSGVM+RG
Sbjct: 216 GFSGVMVRG 224


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 2   GFSGVMLRG 10
           GFSGVM+RG
Sbjct: 216 GFSGVMIRG 224


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 2   GFSGVMLRG 10
           GFSGVM+RG
Sbjct: 216 GFSGVMIRG 224


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 212 WGFSGPMLRG 221


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 214 WGFSGPMLRG 223


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 214 WGFSGPMLRG 223


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 212 WGFSGPMLRG 221


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 214 WGFSGPMLRG 223


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 214 WGFSGPMLRG 223


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 214 WGFSGPMLRG 223


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 214 WGFSGPMLRG 223


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 214 WGFSGPMLRG 223


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 214 WGFSGPMLRG 223


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   YGFSGVMLRG 10
           +GFSG MLRG
Sbjct: 214 WGFSGPMLRG 223


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   YGFSGVMLRG 10
           +G+SGVM+RG
Sbjct: 233 WGYSGVMVRG 242


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 2   GFSGVMLRG 10
           GF+GVMLRG
Sbjct: 240 GFTGVMLRG 248


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 2   GFSGVMLRG 10
           GF+GVMLRG
Sbjct: 240 GFTGVMLRG 248


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 2   GFSGVMLRG 10
           GF+GVMLRG
Sbjct: 240 GFTGVMLRG 248


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 2   GFSGVMLRG 10
           GF+GVMLRG
Sbjct: 240 GFTGVMLRG 248


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 2   GFSGVMLRG 10
           GF+GVMLRG
Sbjct: 240 GFTGVMLRG 248


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 2   GFSGVMLRG 10
           GF+GVMLRG
Sbjct: 240 GFTGVMLRG 248


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 2   GFSGVMLRG 10
           GFSG MLRG
Sbjct: 239 GFSGAMLRG 247


>sp|NUOD_CHLTE|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum tepidum (strain ATCC 49652

Query: 1   YGFSGVMLRG 10
           YG+SG MLRG
Sbjct: 239 YGWSGPMLRG 248


>sp|NUOD_CHLCH|NADH-QUINONE oxidoreductase subunit D|Chlorobium chlorochromatii (strain CaD3)

Query: 1   YGFSGVMLRG 10
           YG+SG MLRG
Sbjct: 239 YGWSGPMLRG 248


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   YGFSGVMLRG 10
           +G+SGVM+RG
Sbjct: 226 WGYSGVMVRG 235


>sp|NUOD_CHLL3|NADH-QUINONE oxidoreductase subunit D|Chlorobium luteolum (strain DSM 273

Query: 1   YGFSGVMLRG 10
           YG+SG MLRG
Sbjct: 234 YGWSGPMLRG 243


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 215 WGFSGVMVRG 224


>sp|NUOD_PELPB|NADH-QUINONE oxidoreductase subunit D|Pelodictyon phaeoclathratiforme (strain

Query: 1   YGFSGVMLRG 10
           YG+SG MLRG
Sbjct: 239 YGWSGPMLRG 248


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   YGFSGVMLRG 10
           +GF+GVM+RG
Sbjct: 215 WGFTGVMVRG 224


>sp|NUOD_CHLPB|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain BS1)

Query: 1   YGFSGVMLRG 10
           YG+SG MLRG
Sbjct: 239 YGWSGPMLRG 248


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   YGFSGVMLRG 10
           +GFSGVM+RG
Sbjct: 223 WGFSGVMVRG 232


>sp|NUOD_CHLPM|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeovibrioides (strain DSM 265

Query: 1   YGFSGVMLRG 10
           YG+SG MLRG
Sbjct: 239 YGWSGPMLRG 248


>sp|IRTA_MYCT3|MYCOBACTIN import ATP-binding/permease protein IrtA|Mycolicibacterium

Query: 2  GFSGVMLRG 10
          GF GVMLRG
Sbjct: 4  GFQGVMLRG 12


>sp|NUOD_HELPS|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain Shi470)

Query: 1   YGFSGVMLRG 10
           +G SG+MLRG
Sbjct: 230 WGMSGIMLRG 239


>sp|NUOD_HELPJ|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain J99 /

Query: 1   YGFSGVMLRG 10
           +G SG+MLRG
Sbjct: 230 WGMSGIMLRG 239


>sp|NUOD_HELPG|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain G27)

Query: 1   YGFSGVMLRG 10
           +G SG+MLRG
Sbjct: 230 WGMSGIMLRG 239


>sp|NUOD_HELP2|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain P12)

Query: 1   YGFSGVMLRG 10
           +G SG+MLRG
Sbjct: 230 WGMSGIMLRG 239


>sp|NUOD_HELPY|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain ATCC 700392

Query: 1   YGFSGVMLRG 10
           +G SG+MLRG
Sbjct: 230 WGMSGIMLRG 239


>sp|NUOD_HELPH|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain HPAG1)

Query: 1   YGFSGVMLRG 10
           +G SG+MLRG
Sbjct: 230 WGMSGIMLRG 239


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   YGFSGVMLRG 10
           +GFSG M+RG
Sbjct: 226 WGFSGPMIRG 235


>sp|NUOD_HELAH|NADH-QUINONE oxidoreductase subunit D|Helicobacter acinonychis (strain Sheeba)

Query: 1   YGFSGVMLRG 10
           +G SG+MLRG
Sbjct: 230 WGMSGIMLRG 239


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   YGFSGVMLRG 10
           +GFSG M+RG
Sbjct: 238 WGFSGPMIRG 247


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 2   GFSGVMLRG 10
           GFSG MLRG
Sbjct: 239 GFSGPMLRG 247


>sp|HISQ_SALTY|HISTIDINE/LYSINE/ARGININE/ORNITHINE transport system permease protein|Salmonella typhimurium (strain

Query: 1  YGFSGVMLRG 10
          YGFSGV+L+G
Sbjct: 3  YGFSGVILQG 12


>sp|HISQ_SALTI|HISTIDINE/LYSINE/ARGININE/ORNITHINE transport system permease protein|Salmonella typhi

Query: 1  YGFSGVMLRG 10
          YGFSGV+L+G
Sbjct: 3  YGFSGVILQG 12


>sp|HISQ_ECOLI|HISTIDINE/LYSINE/ARGININE/ORNITHINE transport system permease protein|Escherichia coli (strain K12)

Query: 1  YGFSGVMLRG 10
          YGFSGV+L+G
Sbjct: 3  YGFSGVILQG 12


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 2   GFSGVMLRG 10
           GFSG MLRG
Sbjct: 239 GFSGPMLRG 247


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   YGFSGVMLRG 10
           +GFSG M+RG
Sbjct: 228 WGFSGPMIRG 237


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 2   GFSGVMLRG 10
           GFSG MLRG
Sbjct: 239 GFSGPMLRG 247


>sp|NUOD_CHLPD|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain DSM

Query: 1   YGFSGVMLRG 10
           YG+SG MLRG
Sbjct: 239 YGWSGPMLRG 248


>sp|NUOD_PROA2|NADH-QUINONE oxidoreductase subunit D|Prosthecochloris aestuarii (strain DSM 271

Query: 1   YGFSGVMLRG 10
           YG+SG MLRG
Sbjct: 239 YGWSGPMLRG 248


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   YGFSGVMLRG 10
           +GFSG M+RG
Sbjct: 219 WGFSGPMIRG 228




59|Sequence|291|300|VMLRGSGIQW

>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   VMLRGSGIQW 10
           VMLRGSG++W
Sbjct: 244 VMLRGSGVEW 253


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   VMLRGSGIQW 10
           VMLRGSG++W
Sbjct: 244 VMLRGSGVEW 253


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   VMLRGSGIQW 10
           VMLRGSG++W
Sbjct: 244 VMLRGSGVEW 253


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   VMLRGSGIQW 10
           VMLRGSG++W
Sbjct: 244 VMLRGSGVEW 253


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   VMLRGSGIQW 10
           VMLRGSG++W
Sbjct: 244 VMLRGSGVEW 253


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   VMLRGSGIQW 10
           VMLRGSG++W
Sbjct: 244 VMLRGSGVEW 253


>sp|NUOD_CHLL3|NADH-QUINONE oxidoreductase subunit D|Chlorobium luteolum (strain DSM 273

Query: 2   MLRGSGIQW 10
           MLRGSG+QW
Sbjct: 240 MLRGSGVQW 248


>sp|NUOD_CHLL2|NADH-QUINONE oxidoreductase subunit D|Chlorobium limicola (strain DSM 245

Query: 2   MLRGSGIQW 10
           MLRGSG+QW
Sbjct: 240 MLRGSGVQW 248


>sp|NUOD_CHLPM|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeovibrioides (strain DSM 265

Query: 2   MLRGSGIQW 10
           MLRGSG+QW
Sbjct: 245 MLRGSGVQW 253


>sp|NUOD_CHLPD|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain DSM

Query: 2   MLRGSGIQW 10
           MLRGSG+QW
Sbjct: 245 MLRGSGVQW 253


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   VMLRGSGIQW 10
           VMLRGSGI W
Sbjct: 224 VMLRGSGIAW 233


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   VMLRGSGIQW 10
           VMLRGSGI W
Sbjct: 224 VMLRGSGIAW 233


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   VMLRGSGIQW 10
           VMLRGSGI W
Sbjct: 261 VMLRGSGIAW 270


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   VMLRGSGIQW 10
           VMLRGSGI W
Sbjct: 261 VMLRGSGIAW 270


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   VMLRGSGIQW 10
           VMLRGSGI W
Sbjct: 261 VMLRGSGIAW 270


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   VMLRGSGIQW 10
           VMLRGSGI W
Sbjct: 220 VMLRGSGIPW 229


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   VMLRGSGIQW 10
           VMLRGSGI W
Sbjct: 261 VMLRGSGIAW 270


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 262 MLRGSGIEW 270


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 262 MLRGSGIEW 270


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 262 MLRGSGIEW 270


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 262 MLRGSGIEW 270


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 262 MLRGSGIEW 270


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 262 MLRGSGIEW 270


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 244 MLRGSGIEW 252


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 244 MLRGSGIEW 252


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 244 MLRGSGIEW 252


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 244 MLRGSGIEW 252


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 244 MLRGSGIEW 252


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 244 MLRGSGIEW 252


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 244 MLRGSGIEW 252


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 244 MLRGSGIEW 252


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 262 MLRGSGIEW 270


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 262 MLRGSGIEW 270


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 244 MLRGSGIEW 252


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 2   MLRGSGIQW 10
           MLRGSGI+W
Sbjct: 244 MLRGSGIEW 252


>sp|NUOD_WOLSU|NADH-QUINONE oxidoreductase subunit D|Wolinella succinogenes (strain ATCC 29543

Query: 1   VMLRGSGIQW 10
           V LRGSGIQW
Sbjct: 234 VALRGSGIQW 243


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   VMLRGSGIQW 10
           VMLRGSG+ W
Sbjct: 261 VMLRGSGVAW 270


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   VMLRGSGIQW 10
           VMLRGSG+ W
Sbjct: 261 VMLRGSGVAW 270


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 244 MLRGSGVEW 252


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 244 MLRGSGVEW 252


>sp|NUOD_PROA2|NADH-QUINONE oxidoreductase subunit D|Prosthecochloris aestuarii (strain DSM 271

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 245 MLRGSGVEW 253


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 244 MLRGSGVEW 252


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 244 MLRGSGVEW 252


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 244 MLRGSGVEW 252


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 244 MLRGSGVEW 252


>sp|NUOD_CHLPB|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain BS1)

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 245 MLRGSGVEW 253


>sp|NUOD_CHLCH|NADH-QUINONE oxidoreductase subunit D|Chlorobium chlorochromatii (strain CaD3)

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 245 MLRGSGVEW 253


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   VMLRGSGIQW 10
           VMLRGSG+ W
Sbjct: 262 VMLRGSGVAW 271


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   VMLRGSGIQW 10
           VM+RGSGI W
Sbjct: 224 VMVRGSGIAW 233


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   VMLRGSGIQW 10
           VM+RGSGI W
Sbjct: 242 VMVRGSGIAW 251


>sp|NUOD_PELPB|NADH-QUINONE oxidoreductase subunit D|Pelodictyon phaeoclathratiforme (strain

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 245 MLRGSGVKW 253


>sp|NUOD_CHLTE|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum tepidum (strain ATCC 49652

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 245 MLRGSGVKW 253


>sp|NUOD_CHLP8|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum parvum (strain DSM 263

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 245 MLRGSGVKW 253


>sp|NUOD2_CHLT3|NADH-QUINONE oxidoreductase subunit D 2|Chloroherpeton thalassium (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 244 MLRGSGVKW 252


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   VMLRGSGIQW 10
           VM+RGSGI W
Sbjct: 220 VMVRGSGIPW 229


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   VMLRGSGIQW 10
           VM+RGSGI W
Sbjct: 220 VMVRGSGIPW 229


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   VMLRGSGIQW 10
           VM+RGSGI W
Sbjct: 220 VMVRGSGIPW 229


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   VMLRGSGIQW 10
           VM+RGSGI W
Sbjct: 237 VMVRGSGIPW 246


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 218 MLRGSGIAW 226


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 220 MLRGSGIAW 228


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 220 MLRGSGIAW 228


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 218 MLRGSGIAW 226


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 220 MLRGSGIAW 228


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 220 MLRGSGIAW 228


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 220 MLRGSGIAW 228


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 220 MLRGSGIAW 228


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 220 MLRGSGIAW 228


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 220 MLRGSGIAW 228


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 220 MLRGSGIAW 228


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 2   MLRGSGIQW 10
           MLRGSGI W
Sbjct: 244 MLRGSGIAW 252


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 219 VMIRGSGVPW 228


>sp|NUOD_SULNB|NADH-QUINONE oxidoreductase subunit D|Sulfurovum sp. (strain NBC37-1)

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 236 MLRGSGVNW 244


>sp|NUOD_HELHP|NADH-QUINONE oxidoreductase subunit D|Helicobacter hepaticus (strain ATCC 51449

Query: 1   VMLRGSGIQW 10
           +M RGSGI+W
Sbjct: 235 IMARGSGIKW 244


>sp|NUOD_CAMC5|NADH-QUINONE oxidoreductase subunit D|Campylobacter curvus (strain 525.92)

Query: 1   VMLRGSGIQW 10
           VMLR SG++W
Sbjct: 235 VMLRASGVKW 244


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 245 MLRGSGVAW 253


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 245 MLRGSGVAW 253


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 245 MLRGSGVAW 253


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 245 MLRGSGVAW 253


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 245 MLRGSGVAW 253


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 230 VMVRGSGLAW 239


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 232 VMVRGSGLAW 241


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 232 VMVRGSGLAW 241


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 238 VMVRGSGLAW 247


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 229 VMVRGSGLAW 238


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 226 VMVRGSGLAW 235


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 2   MLRGSGIQW 10
           MLRGSG+ W
Sbjct: 244 MLRGSGVAW 252


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 231 VMVRGSGLAW 240


>sp|NDHH_SYNP6|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain ATCC 27144

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 224 MLRGSGVKW 232


>sp|NDHH_SYNE7|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus elongatus (strain ATCC 33912

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 224 MLRGSGVKW 232


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 220 VMVRGSGMAW 229


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 234 MIRGSGIAW 242


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 244 MIRGSGIAW 252


>sp|NDHH_SYNY3|NAD(P)H-QUINONE oxidoreductase subunit H|Synechocystis sp. (strain ATCC 27184

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 224 MLRGSGVKW 232


>sp|NUOD_CAMJR|NADH-QUINONE oxidoreductase subunit D|Campylobacter jejuni (strain RM1221)

Query: 1   VMLRGSGIQW 10
           VMLRGSGI++
Sbjct: 234 VMLRGSGIKY 243


>sp|NUOD_CAMJJ|NADH-QUINONE oxidoreductase subunit D|Campylobacter jejuni subsp. jejuni

Query: 1   VMLRGSGIQW 10
           VMLRGSGI++
Sbjct: 234 VMLRGSGIKY 243


>sp|NUOD_CAMJE|NADH-QUINONE oxidoreductase subunit D|Campylobacter jejuni subsp. jejuni

Query: 1   VMLRGSGIQW 10
           VMLRGSGI++
Sbjct: 234 VMLRGSGIKY 243


>sp|NUOD_CAMJD|NADH-QUINONE oxidoreductase subunit D|Campylobacter jejuni subsp. doylei (strain

Query: 1   VMLRGSGIQW 10
           VMLRGSGI++
Sbjct: 234 VMLRGSGIKY 243


>sp|NUOD_CAMJ8|NADH-QUINONE oxidoreductase subunit D|Campylobacter jejuni subsp. jejuni

Query: 1   VMLRGSGIQW 10
           VMLRGSGI++
Sbjct: 234 VMLRGSGIKY 243


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 2   MLRGSGIQW 10
           M+RGSGI W
Sbjct: 232 MIRGSGIPW 240


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 217 VMVRGSGLAW 226


>sp|NDHH_ACAM1|NAD(P)H-QUINONE oxidoreductase subunit H|Acaryochloris marina (strain MBIC 11017)

Query: 2   MLRGSGIQW 10
           MLRGSG++W
Sbjct: 224 MLRGSGVKW 232


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 238 VMVRGSGLAW 247


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   VMLRGSGIQW 10
           VM+RG+G+ W
Sbjct: 220 VMIRGAGVPW 229


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   VMLRGSGIQW 10
           VM+RG+G+ W
Sbjct: 220 VMIRGAGVPW 229


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   VMLRGSGIQW 10
           VM+RG+G+ W
Sbjct: 220 VMIRGAGVPW 229


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   VMLRGSGIQW 10
           VM+RG+G+ W
Sbjct: 220 VMIRGAGVPW 229


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   VMLRGSGIQW 10
           VM+RGSG+ W
Sbjct: 238 VMVRGSGLAW 247


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 239 VMVRGSGFAW 248


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 231 VMVRGSGFAW 240


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 229 VMVRGSGFAW 238


>sp|NUOD_NITSB|NADH-QUINONE oxidoreductase subunit D|Nitratiruptor sp. (strain SB155-2)

Query: 1   VMLRGSGIQW 10
           +MLRGSGI++
Sbjct: 236 IMLRGSGIEY 245


>sp|NDHH_NOSP7|NAD(P)H-QUINONE oxidoreductase subunit H|Nostoc punctiforme (strain ATCC 29133

Query: 2   MLRGSGIQW 10
           MLR SG+QW
Sbjct: 224 MLRASGVQW 232


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 2   MLRGSGIQW 10
           MLRGSG  W
Sbjct: 244 MLRGSGFAW 252


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 2   MLRGSGIQW 10
           MLRGSG  W
Sbjct: 244 MLRGSGFAW 252


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 2   MLRGSGIQW 10
           M+RGSG+ W
Sbjct: 225 MIRGSGVPW 233


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 2   MLRGSGIQW 10
           MLR SG++W
Sbjct: 244 MLRASGVEW 252


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 2   MLRGSGIQW 10
           MLR SG++W
Sbjct: 244 MLRASGVEW 252


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 2   MLRGSGIQW 10
           MLR SG++W
Sbjct: 244 MLRASGVEW 252


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 2   MLRGSGIQW 10
           MLR SG++W
Sbjct: 244 MLRASGVEW 252


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 2   MLRGSGIQW 10
           MLR SG++W
Sbjct: 244 MLRASGVEW 252


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 228 VMVRGSGAAW 237


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 2   MLRGSGIQW 10
           +LRGSG+ W
Sbjct: 244 LLRGSGVAW 252


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 222 VMVRGSGAAW 231


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 225 VMVRGSGAAW 234


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 229 VMVRGSGAAW 238


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 222 VMVRGSGAAW 231


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 222 VMVRGSGAAW 231


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 228 VMVRGSGAPW 237


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 226 VMVRGSGAAW 235


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 226 VMVRGSGAAW 235


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 240 VMVRGSGAAW 249


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 226 VMVRGSGAAW 235


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 226 VMVRGSGAAW 235


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   VMLRGSGIQW 10
           VM+RGSG  W
Sbjct: 220 VMVRGSGAAW 229


>sp|NUOD2_SORC5|NADH-QUINONE oxidoreductase subunit D 2|Sorangium cellulosum (strain So ce56)

Query: 3   LRGSGIQW 10
           LRGSG++W
Sbjct: 236 LRGSGVKW 243




60|Sequence|296|305|SGIQWDLRKT

>sp|NUOD_WOLSU|NADH-QUINONE oxidoreductase subunit D|Wolinella succinogenes (strain ATCC 29543

Query: 1   SGIQWDLRK 9
           SGIQWDLRK
Sbjct: 239 SGIQWDLRK 247


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   SGIQWDLRKT 10
           SGI WDLRKT
Sbjct: 248 SGIAWDLRKT 257


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   SGIQWDLRKT 10
           SGI WDLRKT
Sbjct: 248 SGIAWDLRKT 257


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   SGIQWDLRKT 10
           SGI WDLRKT
Sbjct: 248 SGIAWDLRKT 257


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   SGIQWDLRKT 10
           SGI WDLRKT
Sbjct: 248 SGIAWDLRKT 257


>sp|NUOD1_HERA2|NADH-QUINONE oxidoreductase subunit D 1|Herpetosiphon aurantiacus (strain ATCC

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 252 SGVDWDLRKT 261


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 248 SGVAWDLRKT 257


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 248 SGVAWDLRKT 257


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 248 SGVAWDLRKT 257


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 248 SGVAWDLRKT 257


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 248 SGVAWDLRKT 257


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 248 SGVAWDLRKT 257


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 248 SGVAWDLRKT 257


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 248 SGVAWDLRKT 257


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 249 SGVAWDLRKT 258


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 249 SGVAWDLRKT 258


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 249 SGVAWDLRKT 258


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   SGIQWDLRKT 10
           SG+ WDLRKT
Sbjct: 249 SGVAWDLRKT 258


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   SGIQWDLRKT 10
           SG++WD+RKT
Sbjct: 249 SGVEWDVRKT 258


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   SGIQWDLRKT 10
           SG++WD+RKT
Sbjct: 249 SGVEWDVRKT 258


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   SGIQWDLRKT 10
           SG++WD+RKT
Sbjct: 249 SGVEWDVRKT 258


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   SGIQWDLRKT 10
           SG++WD+RKT
Sbjct: 249 SGVEWDVRKT 258


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   SGIQWDLRKT 10
           SG++WD+RKT
Sbjct: 249 SGVEWDVRKT 258


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 266 SGIEWDLRK 274


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 266 SGIEWDLRK 274


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 266 SGIEWDLRK 274


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 266 SGIEWDLRK 274


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 266 SGIEWDLRK 274


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 266 SGIEWDLRK 274


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 266 SGIEWDLRK 274


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 266 SGIEWDLRK 274


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 248 SGIEWDLRK 256


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 248 SGIEWDLRK 256


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 248 SGIEWDLRK 256


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 248 SGIEWDLRK 256


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 248 SGIEWDLRK 256


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 248 SGIEWDLRK 256


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 248 SGIEWDLRK 256


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 248 SGIEWDLRK 256


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   SGIQWDLRK 9
           SGI+WDLRK
Sbjct: 248 SGIEWDLRK 256


>sp|NUOD_CHLPD|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain DSM

Query: 1   SGIQWDLRK 9
           SG+QWDLR+
Sbjct: 249 SGVQWDLRR 257


>sp|NUOD_CHLL3|NADH-QUINONE oxidoreductase subunit D|Chlorobium luteolum (strain DSM 273

Query: 1   SGIQWDLRK 9
           SG+QWDLR+
Sbjct: 244 SGVQWDLRR 252


>sp|NUOD_CHLL2|NADH-QUINONE oxidoreductase subunit D|Chlorobium limicola (strain DSM 245

Query: 1   SGIQWDLRK 9
           SG+QWDLR+
Sbjct: 244 SGVQWDLRR 252


>sp|NDHH_NOSP7|NAD(P)H-QUINONE oxidoreductase subunit H|Nostoc punctiforme (strain ATCC 29133

Query: 1   SGIQWDLRK 9
           SG+QWDLRK
Sbjct: 228 SGVQWDLRK 236


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 238 SGIAWDLRKS 247


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 222 SGIAWDLRKS 231


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 224 SGIAWDLRKS 233


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 224 SGIAWDLRKS 233


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 222 SGIAWDLRKS 231


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 224 SGIAWDLRKS 233


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 224 SGIAWDLRKS 233


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 224 SGIAWDLRKS 233


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 224 SGIAWDLRKS 233


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 224 SGIAWDLRKS 233


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 224 SGIAWDLRKS 233


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 224 SGIAWDLRKS 233


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 225 SGIAWDLRKS 234


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 229 SGIAWDLRKS 238


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 229 SGIAWDLRKS 238


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_PROA2|NADH-QUINONE oxidoreductase subunit D|Prosthecochloris aestuarii (strain DSM 271

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 249 SGVEWDLRK 257


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 248 SGVEWDLRK 256


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 236 SGIPWDLRKS 245


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 225 SGIPWDLRKS 234


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 225 SGIPWDLRKS 234


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   SGIQWDLRKT 10
           SG+ WDLR+T
Sbjct: 248 SGVAWDLRRT 257


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   SGIQWDLRKT 10
           SGI WDLRK+
Sbjct: 233 SGIPWDLRKS 242


>sp|NUOD2_ROSS1|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus sp. (strain RS-1)

Query: 1   SGIQWDLRKT 10
           +G+ WDLRKT
Sbjct: 247 TGVAWDLRKT 256


>sp|NUOD1_ROSCS|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus castenholzii (strain DSM

Query: 1   SGIQWDLRKT 10
           +G+ WDLRKT
Sbjct: 247 TGVAWDLRKT 256


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 266 SGIAWDLRK 274


>sp|NUOD_CHLPM|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeovibrioides (strain DSM 265

Query: 1   SGIQWDLRK 9
           SG+QWD+R+
Sbjct: 249 SGVQWDIRR 257


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   SGIQWDLRKT 10
           SG+ WDLRK+
Sbjct: 248 SGVAWDLRKS 257


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 266 SGIAWDLRK 274


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 266 SGIAWDLRK 274


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 266 SGIAWDLRK 274


>sp|NUOD_HELHP|NADH-QUINONE oxidoreductase subunit D|Helicobacter hepaticus (strain ATCC 51449

Query: 1   SGIQWDLRK 9
           SGI+WD+RK
Sbjct: 240 SGIKWDIRK 248


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   SGIQWDLRK 9
           SGI+WD+RK
Sbjct: 248 SGIEWDVRK 256


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 225 SGIPWDLRK 233


>sp|NUOD2_SORC5|NADH-QUINONE oxidoreductase subunit D 2|Sorangium cellulosum (strain So ce56)

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 239 SGVKWDLRK 247


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   SGIQWDLRKT 10
           SG+ WDLRK+
Sbjct: 224 SGVPWDLRKS 233


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   SGIQWDLRKT 10
           SG+ WDLRK+
Sbjct: 221 SGVPWDLRKS 230


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   SGIQWDLRK 9
           SGI WDLRK
Sbjct: 248 SGIAWDLRK 256


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   SGIQWDLRKT 10
           SGI WDLR++
Sbjct: 229 SGIAWDLRRS 238


>sp|NDHH_THEVB|NAD(P)H-QUINONE oxidoreductase subunit H|Thermosynechococcus vestitus (strain

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 228 SGVKWDLRK 236


>sp|NUOD_CHLPB|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain BS1)

Query: 1   SGIQWDLRK 9
           SG++WDLR+
Sbjct: 249 SGVEWDLRR 257


>sp|NUOD_CHLCH|NADH-QUINONE oxidoreductase subunit D|Chlorobium chlorochromatii (strain CaD3)

Query: 1   SGIQWDLRK 9
           SG++WDLR+
Sbjct: 249 SGVEWDLRR 257


>sp|NUOD1_SALTO|NADH-QUINONE oxidoreductase subunit D 1|Salinispora tropica (strain ATCC BAA-916

Query: 1   SGIQWDLRKT 10
           +G+ WDLRKT
Sbjct: 258 AGLAWDLRKT 267


>sp|NUOD_FRACC|NADH-QUINONE oxidoreductase subunit D|Frankia casuarinae (strain DSM 45818

Query: 1   SGIQWDLRKT 10
           +G+ WDLRKT
Sbjct: 299 AGLPWDLRKT 308


>sp|NUOD1_SALAI|NADH-QUINONE oxidoreductase subunit D 1|Salinispora arenicola (strain CNS-205)

Query: 1   SGIQWDLRKT 10
           +G+ WDLRKT
Sbjct: 258 AGLAWDLRKT 267


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 266 SGVAWDLRK 274


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 248 SGVAWDLRK 256


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 248 SGVAWDLRK 256


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 248 SGVAWDLRK 256


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 248 SGVAWDLRK 256


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 249 SGVAWDLRK 257


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 248 SGVAWDLRK 256


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 248 SGVAWDLRK 256


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 267 SGVAWDLRK 275


>sp|NDHH_TRIEI|NAD(P)H-QUINONE oxidoreductase subunit H|Trichodesmium erythraeum (strain IMS101)

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 228 SGVKWDLRK 236


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   SGIQWDLRKT 10
           SGI WDLR++
Sbjct: 242 SGIPWDLRRS 251


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 266 SGVAWDLRK 274


>sp|NUOD_CAMC5|NADH-QUINONE oxidoreductase subunit D|Campylobacter curvus (strain 525.92)

Query: 1   SGIQWDLRK 9
           SG++WD+RK
Sbjct: 240 SGVKWDIRK 248


>sp|NUOD_PELPB|NADH-QUINONE oxidoreductase subunit D|Pelodictyon phaeoclathratiforme (strain

Query: 1   SGIQWDLRK 9
           SG++WDLR+
Sbjct: 249 SGVKWDLRR 257


>sp|NUOD_CHLTE|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum tepidum (strain ATCC 49652

Query: 1   SGIQWDLRK 9
           SG++WDLR+
Sbjct: 249 SGVKWDLRR 257


>sp|NUOD_CHLP8|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum parvum (strain DSM 263

Query: 1   SGIQWDLRK 9
           SG++WDLR+
Sbjct: 249 SGVKWDLRR 257


>sp|NUOD2_CHLT3|NADH-QUINONE oxidoreductase subunit D 2|Chloroherpeton thalassium (strain ATCC

Query: 1   SGIQWDLRK 9
           SG++WDLR+
Sbjct: 248 SGVKWDLRR 256


>sp|NUOD_PARS2|NADH-QUINONE oxidoreductase subunit D|Parafrankia sp. (strain EAN1pec)

Query: 1   SGIQWDLRKT 10
           +G+ WDLRKT
Sbjct: 274 AGLPWDLRKT 283


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   SGIQWDLRK 9
           SG++WD+RK
Sbjct: 249 SGVEWDVRK 257


>sp|NUOD_CUTAK|NADH-QUINONE oxidoreductase subunit D|Cutibacterium acnes (strain DSM 16379

Query: 1   SGIQWDLRKT 10
           +G+ WDLRKT
Sbjct: 247 TGLPWDLRKT 256


>sp|NDHH_SYNY3|NAD(P)H-QUINONE oxidoreductase subunit H|Synechocystis sp. (strain ATCC 27184

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 228 SGVKWDLRK 236


>sp|NDHH_PROMP|NAD(P)H-QUINONE oxidoreductase subunit H|Prochlorococcus marinus subsp. pastoris

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVSWDLRK 236


>sp|NUOD_FRAAA|NADH-QUINONE oxidoreductase subunit D|Frankia alni (strain DSM 45986

Query: 1   SGIQWDLRKT 10
           +G+ WDLRKT
Sbjct: 287 AGLPWDLRKT 296


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   SGIQWDLRKT 10
           +GI WDLRK+
Sbjct: 236 AGIPWDLRKS 245


>sp|NUOD2_SYMTH|NADH-QUINONE oxidoreductase subunit D 2|Symbiobacterium thermophilum (strain DSM

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 239 SGVKWDLRK 247


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   SGIQWDLRKT 10
           SG+ WD+RK+
Sbjct: 248 SGVAWDMRKS 257


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 229 SGVPWDLRK 237


>sp|NDHH_MICAN|NAD(P)H-QUINONE oxidoreductase subunit H|Microcystis aeruginosa (strain NIES-843 /

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 228 SGVKWDLRK 236


>sp|NDHH_PROM9|NAD(P)H-QUINONE oxidoreductase subunit H|Prochlorococcus marinus (strain MIT 9312)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVSWDLRK 236


>sp|NDHH_PROMS|NAD(P)H-QUINONE oxidoreductase subunit H|Prochlorococcus marinus (strain AS9601)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVSWDLRK 236


>sp|NDHH_PROM5|NAD(P)H-QUINONE oxidoreductase subunit H|Prochlorococcus marinus (strain MIT 9515)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVSWDLRK 236


>sp|NDHH_PROM4|NAD(P)H-QUINONE oxidoreductase subunit H|Prochlorococcus marinus (strain MIT 9211)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVSWDLRK 236


>sp|NDHH_PROM2|NAD(P)H-QUINONE oxidoreductase subunit H|Prochlorococcus marinus (strain MIT 9215)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVSWDLRK 236


>sp|NDHH_NOSS1|NAD(P)H-QUINONE oxidoreductase subunit H|Nostoc sp. (strain PCC 7120

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 228 SGVKWDLRK 236


>sp|NDHH_PROM0|NAD(P)H-QUINONE oxidoreductase subunit H|Prochlorococcus marinus (strain MIT 9301)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVSWDLRK 236


>sp|NUOD2_SOLUE|NADH-QUINONE oxidoreductase subunit D 2|Solibacter usitatus (strain Ellin6076)

Query: 1   SGIQWDLRK 9
           +G++WDLRK
Sbjct: 228 AGVKWDLRK 236


>sp|NUOD1_KORVE|NADH-QUINONE oxidoreductase subunit D 1|Koribacter versatilis (strain Ellin345)

Query: 1   SGIQWDLRK 9
           +G++WDLRK
Sbjct: 239 AGVKWDLRK 247


>sp|NUOD_GEOKA|NADH-QUINONE oxidoreductase subunit D|Geobacillus kaustophilus (strain HTA426)

Query: 1   SGIQWDLRK 9
           +G++WDLRK
Sbjct: 224 TGVKWDLRK 232


>sp|NDHH_TRIV2|NAD(P)H-QUINONE oxidoreductase subunit H|Trichormus variabilis (strain ATCC 29413

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 228 SGVKWDLRK 236


>sp|NUOD_GEOTN|NADH-QUINONE oxidoreductase subunit D|Geobacillus thermodenitrificans (strain

Query: 1   SGIQWDLRK 9
           +G++WDLRK
Sbjct: 223 TGVKWDLRK 231


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   SGIQWDLRK 9
           SGI WDLR+
Sbjct: 247 SGIAWDLRR 255


>sp|NDHH_PICP2|NAD(P)H-QUINONE oxidoreductase subunit H|Picosynechococcus sp. (strain ATCC 27264

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 228 SGVKWDLRK 236


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   SGIQWDLRK 9
           SGI WDLR+
Sbjct: 239 SGIAWDLRR 247


>sp|NDHH2_GLOVI|NAD(P)H-QUINONE oxidoreductase subunit H 2|Gloeobacter violaceus (strain ATCC 29082

Query: 1   SGIQWDLRK 9
           SG++WDLRK
Sbjct: 228 SGVKWDLRK 236


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   SGIQWDLRK 9
           SGI WDLR+
Sbjct: 225 SGIPWDLRR 233


>sp|NUOD_SULNB|NADH-QUINONE oxidoreductase subunit D|Sulfurovum sp. (strain NBC37-1)

Query: 1   SGIQWDLRK 9
           SG+ WD+RK
Sbjct: 240 SGVNWDIRK 248


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 2   GIQWDLRKT 10
           GI WDLRK+
Sbjct: 227 GIPWDLRKS 235


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 2   GIQWDLRKT 10
           GI WDLRK+
Sbjct: 227 GIPWDLRKS 235


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 2   GIQWDLRKT 10
           GI WDLRK+
Sbjct: 227 GIPWDLRKS 235


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 2   GIQWDLRKT 10
           GI WDLRK+
Sbjct: 227 GIPWDLRKS 235


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 2   GIQWDLRKT 10
           GI WDLRK+
Sbjct: 229 GIPWDLRKS 237


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 2   GIQWDLRKT 10
           GI WDLRK+
Sbjct: 232 GIPWDLRKS 240


>sp|NDHH_PROMA|NAD(P)H-QUINONE oxidoreductase subunit H|Prochlorococcus marinus (strain SARG /

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVPWDLRK 236


>sp|NDHH_SYNP6|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain ATCC 27144

Query: 1   SGIQWDLRK 9
           SG++WDLR+
Sbjct: 228 SGVKWDLRR 236


>sp|NDHH_SYNE7|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus elongatus (strain ATCC 33912

Query: 1   SGIQWDLRK 9
           SG++WDLR+
Sbjct: 228 SGVKWDLRR 236


>sp|NUOD_GEOUR|NADH-QUINONE oxidoreductase subunit D|Geotalea uraniireducens (strain Rf4)

Query: 1   SGIQWDLRK 9
           SG+ WDLR+
Sbjct: 223 SGVDWDLRR 231


>sp|NUOD_GEOSL|NADH-QUINONE oxidoreductase subunit D|Geobacter sulfurreducens (strain ATCC

Query: 1   SGIQWDLRK 9
           SG+ WDLR+
Sbjct: 223 SGVDWDLRR 231


>sp|NUOD_GEOMG|NADH-QUINONE oxidoreductase subunit D|Geobacter metallireducens (strain ATCC

Query: 1   SGIQWDLRK 9
           SG+ WDLR+
Sbjct: 223 SGVDWDLRR 231


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   SGIQWDLRKT 10
           +G+ WDLRK+
Sbjct: 225 AGVPWDLRKS 234


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   SGIQWDLRKT 10
           +G+ WDLRK+
Sbjct: 225 AGVPWDLRKS 234


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   SGIQWDLRKT 10
           +G+ WDLRK+
Sbjct: 225 AGVPWDLRKS 234


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   SGIQWDLRKT 10
           +G+ WDLRK+
Sbjct: 225 AGVPWDLRKS 234


>sp|NUOD_BACMK|NADH-QUINONE oxidoreductase subunit D|Bacillus mycoides (strain KBAB4) (Bacillus

Query: 1   SGIQWDLRK 9
           +G+ WDLRK
Sbjct: 223 TGVHWDLRK 231


>sp|NDHH1_GLOVI|NAD(P)H-QUINONE oxidoreductase subunit H 1|Gloeobacter violaceus (strain ATCC 29082

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 227 SGVNWDLRK 235


>sp|NDHH_SYNS3|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain CC9311)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVPWDLRK 236


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   SGIQWDLRKT 10
           SG+ WDLR++
Sbjct: 231 SGLAWDLRRS 240


>sp|NUOD_BACHK|NADH-QUINONE oxidoreductase subunit D|Bacillus thuringiensis subsp. konkukian

Query: 1   SGIQWDLRK 9
           +G+ WDLRK
Sbjct: 223 TGVNWDLRK 231


>sp|NUOD_BACAH|NADH-QUINONE oxidoreductase subunit D|Bacillus thuringiensis (strain Al Hakam)

Query: 1   SGIQWDLRK 9
           +G+ WDLRK
Sbjct: 223 TGVNWDLRK 231


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   SGIQWDLRKT 10
           SG+ WDLR++
Sbjct: 234 SGLAWDLRRS 243


>sp|NUOD_BACCZ|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ZK /

Query: 1   SGIQWDLRK 9
           +G+ WDLRK
Sbjct: 223 TGVNWDLRK 231


>sp|NUOD_BACCR|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ATCC 14579

Query: 1   SGIQWDLRK 9
           +G+ WDLRK
Sbjct: 223 TGVNWDLRK 231


>sp|NUOD_BACC1|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ATCC 10987

Query: 1   SGIQWDLRK 9
           +G+ WDLRK
Sbjct: 223 TGVNWDLRK 231


>sp|NUOD_BACAN|NADH-QUINONE oxidoreductase subunit D|Bacillus anthracis

Query: 1   SGIQWDLRK 9
           +G+ WDLRK
Sbjct: 223 TGVNWDLRK 231


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   SGIQWDLRKT 10
           SG+ WDLR++
Sbjct: 222 SGLAWDLRRS 231


>sp|NUOD_SULDN|NADH-QUINONE oxidoreductase subunit D|Sulfurimonas denitrificans (strain ATCC

Query: 1   SGIQWDLRK 9
           SG+ WD+RK
Sbjct: 239 SGVAWDIRK 247


>sp|NDHH_PARMW|NAD(P)H-QUINONE oxidoreductase subunit H|Parasynechococcus marenigrum (strain

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVPWDLRK 236


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   SGIQWDLRKT 10
           +G+ WDLRK+
Sbjct: 223 AGLAWDLRKS 232


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   SGIQWDLRKT 10
           +G+ WDLRK+
Sbjct: 223 AGLAWDLRKS 232


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   SGIQWDLRKT 10
           +G+ WDLRK+
Sbjct: 223 AGLAWDLRKS 232


>sp|NUOD_DEHMC|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain CBDB1)

Query: 1   SGIQWDLRK 9
           SGI WD+R+
Sbjct: 225 SGINWDIRR 233


>sp|NUOD_DEHMB|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1   SGIQWDLRK 9
           SGI WD+R+
Sbjct: 225 SGINWDIRR 233


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 231 SGAAWDLRKS 240


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 245 SGAAWDLRKS 254


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 231 SGAAWDLRKS 240


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 230 SGAAWDLRKS 239


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 225 SGAAWDLRKS 234


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 227 SGAAWDLRKS 236


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 227 SGAAWDLRKS 236


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   SGIQWDLRKT 10
           SG  WDLRK+
Sbjct: 227 SGAAWDLRKS 236


>sp|NDHH_SYNPW|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain WH7803)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVPWDLRK 236


>sp|NDHH_ACAM1|NAD(P)H-QUINONE oxidoreductase subunit H|Acaryochloris marina (strain MBIC 11017)

Query: 1   SGIQWDLRK 9
           SG++WDLR+
Sbjct: 228 SGVKWDLRR 236


>sp|NUBCD_GEOSL|NADH-QUINONE oxidoreductase subunit B/C/D|Geobacter sulfurreducens (strain ATCC

Query: 2   GIQWDLRK 9
           G++WDLRK
Sbjct: 626 GVEWDLRK 633


>sp|NDHH_SYNS9|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain CC9902)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVPWDLRK 236


>sp|NDHH_SYNR3|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain RCC307)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVAWDLRK 236


>sp|NDHH_SYNSC|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain CC9605)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVPWDLRK 236


>sp|NDHH_PROMM|NAD(P)H-QUINONE oxidoreductase subunit H|Prochlorococcus marinus (strain MIT 9313)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVPWDLRK 236


>sp|NDHH_PROM3|NAD(P)H-QUINONE oxidoreductase subunit H|Prochlorococcus marinus (strain MIT 9303)

Query: 1   SGIQWDLRK 9
           SG+ WDLRK
Sbjct: 228 SGVPWDLRK 236


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   SGIQWDLRK 9
           SG  WDLRK
Sbjct: 248 SGFAWDLRK 256


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   SGIQWDLRK 9
           SG  WDLRK
Sbjct: 248 SGFAWDLRK 256


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   SGIQWDLRKT 10
           +GI WD+RK+
Sbjct: 239 AGIPWDIRKS 248


>sp|NUOCD_SHEWM|NADH-QUINONE oxidoreductase subunit C/D|Shewanella woodyi (strain ATCC 51908

Query: 1   SGIQWDLRK 9
           +G++WDLRK
Sbjct: 432 TGLEWDLRK 440


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   SGIQWDLRK 9
           SG+ WDLR+
Sbjct: 249 SGVPWDLRR 257


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 2   GIQWDLRKT 10
           G+ WDLRK+
Sbjct: 226 GVPWDLRKS 234


>sp|NUBCD_GEOUR|NADH-QUINONE oxidoreductase subunit B/C/D|Geotalea uraniireducens (strain Rf4)

Query: 2   GIQWDLRK 9
           G++WDLRK
Sbjct: 627 GLEWDLRK 634


>sp|NUOD_BACCN|NADH-QUINONE oxidoreductase subunit D|Bacillus cytotoxicus (strain DSM 22905

Query: 1   SGIQWDLRK 9
           +G++WD+RK
Sbjct: 223 TGVKWDIRK 231


>sp|NUBCD_SYNC1|NADH-QUINONE oxidoreductase subunit B/C/D|Syntrophotalea carbinolica (strain DSM

Query: 1   SGIQWDLRKT 10
           +G+ WDLRK+
Sbjct: 627 TGLAWDLRKS 636


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   SGIQWDLRKT 10
           SG+ WDLR++
Sbjct: 243 SGLAWDLRRS 252


>sp|NUOD_NOCSJ|NADH-QUINONE oxidoreductase subunit D|Nocardioides sp. (strain ATCC BAA-499

Query: 1   SGIQWDLRKT 10
           +G  WDLRKT
Sbjct: 260 TGYPWDLRKT 269


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   SGIQWDLRKT 10
           SG+ WDLR++
Sbjct: 243 SGLAWDLRRS 252




61|Sequence|301|310|DLRKTQPYDV

>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   DLRKTQPYDV 10
           DLRKTQPYDV
Sbjct: 253 DLRKTQPYDV 262


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   DLRKTQPYDV 10
           DLRKTQPYDV
Sbjct: 253 DLRKTQPYDV 262


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRKTQPYDV
Sbjct: 253 DLRKTQPYDV 262


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRKTQPYDV
Sbjct: 253 DLRKTQPYDV 262


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   DLRKTQPYDV 10
           DLRK+QPYDV
Sbjct: 232 DLRKSQPYDV 241


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   DLRKTQPYDV 10
           DLRK+QPYDV
Sbjct: 241 DLRKSQPYDV 250


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   DLRKTQPYDV 10
           DLRK+QPYDV
Sbjct: 232 DLRKSQPYDV 241


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   DLRKTQPYDV 10
           DLRK+QPYDV
Sbjct: 230 DLRKSQPYDV 239


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   DLRKTQPYDV 10
           DLRK+QPYDV
Sbjct: 241 DLRKSQPYDV 250


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 253 DLRKTQPYEV 262


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 253 DLRKTQPYEV 262


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 253 DLRKTQPYEV 262


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 254 DLRKTQPYEV 263


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 254 DLRKTQPYEV 263


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 254 DLRKTQPYEV 263


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 253 DLRKTQPYEV 262


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 253 DLRKTQPYEV 262


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 254 DLRKTQPYEV 263


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 253 DLRKTQPYEV 262


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 253 DLRKTQPYEV 262


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   DLRKTQPYDV 10
           DLRKTQPY+V
Sbjct: 253 DLRKTQPYEV 262


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   DLRKTQPYDV 10
           DLRK QPYDV
Sbjct: 253 DLRKQQPYDV 262


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   DLRKTQPYDV 10
           D+RK+QPYDV
Sbjct: 244 DIRKSQPYDV 253


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK QPYDV
Sbjct: 253 DLRKKQPYDV 262


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   DLRKTQPYD 9
           DLRK+QPYD
Sbjct: 243 DLRKSQPYD 251


>sp|NUOD_CUTAK|NADH-QUINONE oxidoreductase subunit D|Cutibacterium acnes (strain DSM 16379

Query: 1   DLRKTQPY 8
           DLRKTQPY
Sbjct: 252 DLRKTQPY 259


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   DLRKTQPYD 9
           DLRK+QPYD
Sbjct: 234 DLRKSQPYD 242


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   DLRKTQPYD 9
           DLRK+QPYD
Sbjct: 229 DLRKSQPYD 237


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   DLRKTQPYD 9
           DLRK+QPYD
Sbjct: 234 DLRKSQPYD 242


>sp|NUOD_NOCSJ|NADH-QUINONE oxidoreductase subunit D|Nocardioides sp. (strain ATCC BAA-499

Query: 1   DLRKTQPY 8
           DLRKTQPY
Sbjct: 265 DLRKTQPY 272


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   DLRKTQPYD 9
           DLRK+QPYD
Sbjct: 238 DLRKSQPYD 246


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   DLRKTQPYDV 10
           D+RKTQPY+V
Sbjct: 254 DVRKTQPYEV 263


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   DLRKTQPYDV 10
           D+RKTQPY+V
Sbjct: 254 DVRKTQPYEV 263


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   DLRKTQPYDV 10
           D+RKTQPY+V
Sbjct: 254 DVRKTQPYEV 263


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   DLRKTQPYDV 10
           D+RKTQPY+V
Sbjct: 254 DVRKTQPYEV 263


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   DLRKTQPYDV 10
           D+RKTQPY+V
Sbjct: 254 DVRKTQPYEV 263


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   DLRKTQPYDV 10
           DLRK+QPY+V
Sbjct: 253 DLRKSQPYEV 262


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   DLRKTQPYDV 10
           DLRK+QPYD 
Sbjct: 230 DLRKSQPYDA 239


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 229 DLRKSNPYDV 238


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   DLRKTQPYDV 10
           DLRK+QPY+V
Sbjct: 226 DLRKSQPYEV 235


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 229 DLRKSNPYDV 238


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 227 DLRKSNPYDV 236


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 227 DLRKSNPYDV 236


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 229 DLRKSNPYDV 238


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 229 DLRKSNPYDV 238


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 229 DLRKSNPYDV 238


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   DLRKTQPYDV 10
           DLRK+QPY++
Sbjct: 231 DLRKSQPYEI 240


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 229 DLRKSNPYDV 238


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   DLRKTQPYD 9
           DLRK QPYD
Sbjct: 234 DLRKAQPYD 242


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKQQPYEV 262


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   DLRKTQPYDV 10
           DLRK+QPY++
Sbjct: 231 DLRKSQPYEI 240


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   DLRKTQPYDV 10
           DLRK+QPY++
Sbjct: 228 DLRKSQPYEI 237


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 229 DLRKSNPYDV 238


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 229 DLRKSNPYDV 238


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   DLRKTQPYDV 10
           DLRK+ PYDV
Sbjct: 229 DLRKSNPYDV 238


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   DLRKTQPYDV 10
           DLRK+QPY++
Sbjct: 228 DLRKSQPYEI 237


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   DLRKTQPYDV 10
           DLRK+QPY++
Sbjct: 236 DLRKSQPYEI 245


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   DLRKTQPYDV 10
           DLRK+QPY++
Sbjct: 228 DLRKSQPYEI 237


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK+QPY++
Sbjct: 231 DLRKSQPYEI 240


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   DLRKTQPYD 9
           DLRK QPYD
Sbjct: 253 DLRKKQPYD 261


>sp|NUOD2_STRCO|NADH-QUINONE oxidoreductase subunit D 2|Streptomyces coelicolor (strain ATCC

Query: 1   DLRKTQPY 8
           DLRKTQPY
Sbjct: 262 DLRKTQPY 269


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   DLRKTQPYDV 10
           DLRK+QPY++
Sbjct: 231 DLRKSQPYEI 240


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   DLRKTQPYDV 10
           DLRK+QPY++
Sbjct: 233 DLRKSQPYEI 242


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   DLRKTQPYD 9
           DLRK QPYD
Sbjct: 253 DLRKKQPYD 261


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   DLRKTQPYDV 10
           DLRK+QPY++
Sbjct: 230 DLRKSQPYEL 239


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   DLRKTQPYD 9
           DLR+ QPYD
Sbjct: 244 DLRRAQPYD 252


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 254 DLRKMQPYEV 263


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   DLRKTQPYD 9
           DLR+ QPYD
Sbjct: 254 DLRRAQPYD 262


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   DLRKTQPYDV 10
           D+RK+QPY+V
Sbjct: 253 DMRKSQPYEV 262


>sp|NUOD_MYCGI|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium gilvum (strain PYR-GCK)

Query: 1   DLRKTQPY 8
           DLRK+QPY
Sbjct: 270 DLRKSQPY 277


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 250 DLRKSQPYE 258


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK QPY++
Sbjct: 253 DLRKKQPYEI 262


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 235 DLRKSQPYE 243


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 232 DLRKSQPYE 240


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 236 DLRKSQPYE 244


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   DLRKTQPYDV 10
           DLR+ QPY+V
Sbjct: 230 DLRRAQPYEV 239


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 236 DLRKSQPYE 244


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   DLRKTQPYD 9
           DLRK+QPY+
Sbjct: 230 DLRKSQPYE 238


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_WOLSU|NADH-QUINONE oxidoreductase subunit D|Wolinella succinogenes (strain ATCC 29543

Query: 1   DLRKTQPYDV 10
           DLRK QPY++
Sbjct: 244 DLRKEQPYEL 253


>sp|NUOD_RHOJR|NADH-QUINONE oxidoreductase subunit D|Rhodococcus jostii (strain RHA1)

Query: 1   DLRKTQPY 8
           DLRK+QPY
Sbjct: 260 DLRKSQPY 267


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   DLRKTQPYDV 10
           DLR++QPY V
Sbjct: 236 DLRRSQPYSV 245


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   DLRKTQPYDV 10
           DLRK QPY+V
Sbjct: 253 DLRKKQPYEV 262


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   DLRKTQPYD 9
           DLRK QPY+
Sbjct: 236 DLRKAQPYE 244


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   DLRKTQPYD 9
           DLRK QPY+
Sbjct: 236 DLRKAQPYE 244


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   DLRKTQPYD 9
           DLRK QPY+
Sbjct: 230 DLRKAQPYE 238


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   DLRKTQPYD 9
           DLRK QPY+
Sbjct: 230 DLRKAQPYE 238


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   DLRKTQPYD 9
           DLRK QPY+
Sbjct: 230 DLRKAQPYE 238


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   DLRKTQPYD 9
           DLRK +PYD
Sbjct: 235 DLRKAEPYD 243


>sp|NUOD_NOCFA|NADH-QUINONE oxidoreductase subunit D|Nocardia farcinica (strain IFM 10152)

Query: 1   DLRKTQPY 8
           DLRK+QPY
Sbjct: 275 DLRKSQPY 282


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1   DLRKTQPY 8
           DLRK+QPY
Sbjct: 265 DLRKSQPY 272


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   DLRKTQPYDV 10
           DLRK QPY V
Sbjct: 253 DLRKNQPYAV 262


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   DLRKTQPYD 9
           DLRK QPY+
Sbjct: 230 DLRKAQPYE 238


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   DLRKTQPYDV 10
           DLRK QPY V
Sbjct: 253 DLRKNQPYAV 262


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   DLRKTQPY 8
           DLR+TQPY
Sbjct: 253 DLRRTQPY 260


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   DLRKTQPYDV 10
           D+RK QPY+V
Sbjct: 253 DVRKKQPYEV 262




62|Sequence|306|315|QPYDVYDQVE

>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   QPYDVYDQVE 10
           QPYDVYDQ+E
Sbjct: 235 QPYDVYDQME 244


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   QPYDVYDQVE 10
           QPYDVYD+VE
Sbjct: 258 QPYDVYDRVE 267


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   QPYDVYDQVE 10
           QPYDVYD+V+
Sbjct: 258 QPYDVYDRVD 267


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   QPYDVYDQVE 10
           QPYDVYD++E
Sbjct: 246 QPYDVYDRME 255


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   QPYDVYDQVE 10
           QPYD YD+VE
Sbjct: 258 QPYDAYDRVE 267


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   QPYDVYDQVE 10
           QPYDVYD++E
Sbjct: 246 QPYDVYDRME 255


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   QPYDVYDQVE 10
           QPYD YD+VE
Sbjct: 259 QPYDNYDKVE 268


>sp|RLMN_CYTH3|PROBABLE dual-specificity RNA methyltransferase RlmN|Cytophaga hutchinsonii

Query: 1   QPYDVYDQV 9
           +PY++YDQV
Sbjct: 150 EPYEIYDQV 158


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   QPYDVYDQVE 10
           QPYDVYD+++
Sbjct: 258 QPYDVYDRMD 267


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   QPYDVYDQVE 10
           QPYDVYD+++
Sbjct: 258 QPYDVYDKMD 267


>sp|NUOD_WOLSU|NADH-QUINONE oxidoreductase subunit D|Wolinella succinogenes (strain ATCC 29543

Query: 1   QPYDVYDQVE 10
           QPY++YD+VE
Sbjct: 249 QPYELYDEVE 258


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   QPYDVYDQVE 10
           QPY VYDQ+E
Sbjct: 258 QPYAVYDQLE 267


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   QPYDVYDQVE 10
           QPY+VYDQV+
Sbjct: 258 QPYEVYDQVD 267


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   QPYDVYDQVE 10
           QPYD Y+Q+E
Sbjct: 234 QPYDCYEQLE 243


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   QPYDVYDQVE 10
           QPY+VYDQV+
Sbjct: 258 QPYEVYDQVD 267


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   QPYDVYDQVE 10
           QPYDVYD+++
Sbjct: 258 QPYDVYDRMD 267


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   QPYDVYDQVE 10
           QPYD YD+V+
Sbjct: 258 QPYDAYDRVD 267


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   QPYDVYDQVE 10
           QPYD YD+V+
Sbjct: 249 QPYDKYDEVD 258


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   QPYDVYDQVE 10
           QPY++YD++E
Sbjct: 236 QPYEIYDELE 245


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   QPYDVYDQVE 10
           QPY++YD++E
Sbjct: 236 QPYEIYDELE 245


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 2   PYDVYDQVE 10
           PYDVYD++E
Sbjct: 235 PYDVYDEME 243


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   QPYDVYDQVE 10
           QPYDVYD+++
Sbjct: 249 QPYDVYDRMD 258


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   QPYDVYDQVE 10
           QPY++YDQ++
Sbjct: 233 QPYEIYDQLD 242


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 2   PYDVYDQVE 10
           PYDVYD+++
Sbjct: 235 PYDVYDEID 243


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   QPYDVYDQVE 10
           QPY++YDQ++
Sbjct: 233 QPYEIYDQLD 242


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   QPYDVYDQVE 10
           QPY++YDQ++
Sbjct: 233 QPYEIYDQLD 242


>sp|NUCD1_AQUAE|NADH-QUINONE oxidoreductase subunit C/D 1|Aquifex aeolicus (strain VF5)

Query: 1   QPYDVYDQVE 10
           +PYD YD+VE
Sbjct: 447 EPYDAYDEVE 456


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   QPYDVYDQVE 10
           +PYD YD+VE
Sbjct: 240 EPYDAYDRVE 249


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 2   PYDVYDQVE 10
           PYDVYD+++
Sbjct: 235 PYDVYDEID 243


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   QPYDVYDQVE 10
           QPY+VYDQ++
Sbjct: 258 QPYEVYDQMD 267


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   QPYDVYDQVE 10
           QPY+VYDQ++
Sbjct: 258 QPYEVYDQLD 267


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   QPYDVYDQVE 10
           QPYDVY+ ++
Sbjct: 258 QPYDVYEHMD 267


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   QPYDVYDQVE 10
           QPY+VYD+++
Sbjct: 259 QPYEVYDKMD 268


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   QPYDVYDQVE 10
           QPY+VYD+V+
Sbjct: 258 QPYEVYDKVD 267


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   QPYDVYDQVE 10
           QPY+ YD++E
Sbjct: 235 QPYECYDEME 244


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   QPYDVYDQVE 10
           QPY+VYD+++
Sbjct: 259 QPYEVYDKMD 268


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   QPYDVYDQVE 10
           QPY+VYD+++
Sbjct: 259 QPYEVYDKMD 268


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   QPYDVYDQVE 10
           QPY+ YD++E
Sbjct: 235 QPYECYDEME 244


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   QPYDVYDQVE 10
           QPY+ YD++E
Sbjct: 235 QPYECYDEME 244


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   QPYDVYDQVE 10
           QPY+ YD++E
Sbjct: 244 QPYECYDEME 253


>sp|NUOD_SULDN|NADH-QUINONE oxidoreductase subunit D|Sulfurimonas denitrificans (strain ATCC

Query: 1   QPYDVYDQVE 10
           +PY++YD+VE
Sbjct: 249 EPYELYDEVE 258


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   QPYDVYDQVE 10
           QPY+VYD+++
Sbjct: 259 QPYEVYDKMD 268


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   QPYDVYDQVE 10
           QPY+VYD+++
Sbjct: 259 QPYEVYDKMD 268


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   QPYDVYDQVE 10
           QPY+VYD+++
Sbjct: 258 QPYEVYDKLD 267




63|Sequence|311|320|YDQVEFDVPV

>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   YDQVEFDVPV 10
           YDQ+EFD+PV
Sbjct: 263 YDQLEFDIPV 272


>sp|NUOD_WOLSU|NADH-QUINONE oxidoreductase subunit D|Wolinella succinogenes (strain ATCC 29543

Query: 1   YDQVEFDVPV 10
           YD+VEFD+PV
Sbjct: 254 YDEVEFDIPV 263


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   YDQVEFDVPV 10
           YD+VEFD+PV
Sbjct: 263 YDRVEFDIPV 272


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   YDQVEFDVPV 10
           YD+VEFD+PV
Sbjct: 263 YDRVEFDIPV 272


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   YDQVEFDVPV 10
           YD+VEFD+PV
Sbjct: 263 YDRVEFDIPV 272


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   YDQVEFDVPV 10
           YD+V+FD+PV
Sbjct: 254 YDEVDFDIPV 263


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   YDQVEFDVPV 10
           YDQ+EFD+PV
Sbjct: 240 YDQMEFDIPV 249


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   YDQVEFDVPV 10
           YDQV+FD+PV
Sbjct: 263 YDQVDFDIPV 272


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD+VEFD+PV
Sbjct: 263 YDRVEFDIPV 272


>sp|NUOCD_ACICJ|NADH-QUINONE oxidoreductase subunit C/D|Acidiphilium cryptum (strain JF-5)

Query: 1   YDQVEFDVPV 10
           YDQ+EFD+P+
Sbjct: 440 YDQLEFDIPI 449


>sp|NUCD1_AQUAE|NADH-QUINONE oxidoreductase subunit C/D 1|Aquifex aeolicus (strain VF5)

Query: 1   YDQVEFDVPV 10
           YD+VEFD+PV
Sbjct: 452 YDEVEFDIPV 461


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   YDQVEFDVPV 10
           YDQ++FD+PV
Sbjct: 263 YDQIDFDIPV 272


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   YDQVEFDVPV 10
           YDQV+FD+PV
Sbjct: 263 YDQVDFDIPV 272


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   YDQVEFDVPV 10
           YD+V+FDVPV
Sbjct: 263 YDRVDFDVPV 272


>sp|NUOD_LEPBL|NADH-QUINONE oxidoreductase subunit D|Leptospira borgpetersenii serovar

Query: 1   YDQVEFDVPV 10
           YD+V+FDVP+
Sbjct: 253 YDKVDFDVPI 262


>sp|NUOD_LEPBJ|NADH-QUINONE oxidoreductase subunit D|Leptospira borgpetersenii serovar

Query: 1   YDQVEFDVPV 10
           YD+V+FDVP+
Sbjct: 252 YDKVDFDVPI 261


>sp|NUOCD_GLUDA|NADH-QUINONE oxidoreductase subunit C/D|Gluconacetobacter diazotrophicus (strain

Query: 1   YDQVEFDVP 9
           YDQ+EFD+P
Sbjct: 449 YDQLEFDIP 457


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD+VEFD+PV
Sbjct: 245 YDRVEFDIPV 254


>sp|NUCD2_AQUAE|NADH-QUINONE oxidoreductase subunit C/D 2|Aquifex aeolicus (strain VF5)

Query: 1   YDQVEFDVPV 10
           YD+VEFD+PV
Sbjct: 430 YDEVEFDIPV 439


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   YDQVEFDVPV 10
           YD++EFD+PV
Sbjct: 240 YDEMEFDIPV 249


>sp|NUOD1_OPITP|NADH-QUINONE oxidoreductase subunit D 1|Opitutus terrae (strain DSM 11246

Query: 1   YDQVEFDVPV 10
           Y+Q EFDVPV
Sbjct: 273 YEQYEFDVPV 282


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   YDQVEFDVPV 10
           YDQ++FD+PV
Sbjct: 263 YDQMDFDIPV 272


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   YDQVEFDVPV 10
           YDQ++FD+PV
Sbjct: 263 YDQLKFDIPV 272


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD+V+FD+PV
Sbjct: 263 YDRVDFDIPV 272


>sp|NUOD1_SORC5|NADH-QUINONE oxidoreductase subunit D 1|Sorangium cellulosum (strain So ce56)

Query: 1   YDQVEFDVPV 10
           YD+ EFDVPV
Sbjct: 251 YDRFEFDVPV 260


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   YDQVEFDVPV 10
           YDQ++FD+PV
Sbjct: 238 YDQLDFDIPV 247


>sp|NUOD2_ANADF|NADH-QUINONE oxidoreductase subunit D 2|Anaeromyxobacter sp. (strain Fw109-5)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 279 YDRIDFDIPV 288


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   YDQVEFDVPV 10
           YD+VEF++PV
Sbjct: 264 YDKVEFNIPV 273


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   YDQVEFDVPV 10
           YD+V+FD+PV
Sbjct: 263 YDRVDFDIPV 272


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   YDQVEFDVPV 10
           YD+V+FD+PV
Sbjct: 263 YDRVDFDIPV 272


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   YDQVEFDVPV 10
           YD++EFD+P+
Sbjct: 249 YDEMEFDIPI 258


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   YDQVEFDVPV 10
           YD V+FD+PV
Sbjct: 282 YDAVDFDIPV 291


>sp|NUOD_LEPIN|NADH-QUINONE oxidoreductase subunit D|Leptospira interrogans serogroup

Query: 1   YDQVEFDVPV 10
           YD+V+FD+P+
Sbjct: 253 YDKVDFDIPI 262


>sp|NUOD_LEPIC|NADH-QUINONE oxidoreductase subunit D|Leptospira interrogans serogroup

Query: 1   YDQVEFDVPV 10
           YD+V+FD+P+
Sbjct: 253 YDKVDFDIPI 262


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   YDQVEFDVPV 10
           YD++EFD+P+
Sbjct: 240 YDEMEFDIPI 249


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   YDQVEFDVPV 10
           YD V+FDVPV
Sbjct: 281 YDAVDFDVPV 290


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   YDQVEFDVPV 10
           YD V+FDVPV
Sbjct: 281 YDAVDFDVPV 290


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   YDQVEFDVPV 10
           YD V+FDVPV
Sbjct: 281 YDAVDFDVPV 290


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   YDQVEFDVPV 10
           YD+V+FD+PV
Sbjct: 263 YDKVDFDIPV 272


>sp|NUOCD_NITMU|NADH-QUINONE oxidoreductase subunit C/D|Nitrosospira multiformis (strain ATCC

Query: 1   YDQVEFDVP 9
           YDQ EFDVP
Sbjct: 456 YDQFEFDVP 464


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   YDQVEFDVPV 10
           YDQ++FD+PV
Sbjct: 263 YDQLDFDIPV 272


>sp|NUOCD_AERHH|NADH-QUINONE oxidoreductase subunit C/D|Aeromonas hydrophila subsp. hydrophila

Query: 1   YDQVEFDVPV 10
           YDQ EF+VPV
Sbjct: 449 YDQFEFEVPV 458


>sp|NUOD2_ANASK|NADH-QUINONE oxidoreductase subunit D 2|Anaeromyxobacter sp. (strain K)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 279 YDRLDFDIPV 288


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   YDQVEFDVPV 10
           YDQ++FD+P+
Sbjct: 238 YDQLDFDIPI 247


>sp|NUOD_NITSB|NADH-QUINONE oxidoreductase subunit D|Nitratiruptor sp. (strain SB155-2)

Query: 1   YDQVEFDVPV 10
           YD+V+FD+PV
Sbjct: 256 YDEVDFDIPV 265


>sp|NUOD1_ANADE|NADH-QUINONE oxidoreductase subunit D 1|Anaeromyxobacter dehalogenans (strain

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 278 YDRLDFDIPV 287


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   YDQVEFDVPV 10
           YD++EFD+PV
Sbjct: 240 YDEMEFDIPV 249


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   YDQVEFDVPV 10
           YDQ++FD+P+
Sbjct: 238 YDQLDFDIPI 247


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD++EFD+PV
Sbjct: 240 YDEMEFDIPV 249


>sp|NUOD_CAMC1|NADH-QUINONE oxidoreductase subunit D|Campylobacter concisus (strain 13826)

Query: 1   YDQVEFDVP 9
           YD++EFDVP
Sbjct: 255 YDELEFDVP 263


>sp|NUOD2_SYMTH|NADH-QUINONE oxidoreductase subunit D 2|Symbiobacterium thermophilum (strain DSM

Query: 1   YDQVEFDVPV 10
           YD+ EFD+PV
Sbjct: 254 YDRFEFDIPV 263


>sp|NUOD1_KORVE|NADH-QUINONE oxidoreductase subunit D 1|Koribacter versatilis (strain Ellin345)

Query: 1   YDQVEFDVPV 10
           YDQV+FDVP 
Sbjct: 254 YDQVDFDVPT 263


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   YDQVEFDVPV 10
           YD++EFD+PV
Sbjct: 251 YDRMEFDIPV 260


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   YDQVEFDVPV 10
           YD++ FDVPV
Sbjct: 263 YDKINFDVPV 272


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   YDQVEFDVPV 10
           YD++EFD+PV
Sbjct: 251 YDRMEFDIPV 260


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDKMDFDVPV 272


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   YDQVEFDVPV 10
           YD V+FD+PV
Sbjct: 281 YDAVDFDIPV 290


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   YDQVEFDVPV 10
           YD V+FD+PV
Sbjct: 281 YDAVDFDIPV 290


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   YDQVEFDVPV 10
           YD V+FD+PV
Sbjct: 281 YDAVDFDIPV 290


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   YDQVEFDVPV 10
           YD V+FD+PV
Sbjct: 281 YDAVDFDIPV 290


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   YDQVEFDVPV 10
           YD V+FD+PV
Sbjct: 281 YDAVDFDIPV 290


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 240 YDELQFDIPV 249


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDRMDFDVPV 272


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRMDFDIPV 272


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRIDFDIPV 272


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   YDQVEFDVPV 10
           YD+V+FD+P+
Sbjct: 263 YDRVDFDIPI 272


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   YDQVEFDVPV 10
           YD+V+FD+P+
Sbjct: 263 YDRVDFDIPI 272


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRIDFDIPV 272


>sp|NUOD_LEPBP|NADH-QUINONE oxidoreductase subunit D|Leptospira biflexa serovar Patoc (strain

Query: 1   YDQVEFDVPV 10
           YD+V FD+PV
Sbjct: 254 YDKVNFDIPV 263


>sp|NUOD_LEPBA|NADH-QUINONE oxidoreductase subunit D|Leptospira biflexa serovar Patoc (strain

Query: 1   YDQVEFDVPV 10
           YD+V FD+PV
Sbjct: 254 YDKVNFDIPV 263


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   YDQVEFDVPV 10
           YD+V+FD+P+
Sbjct: 263 YDRVDFDIPI 272


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   YDQVEFDVPV 10
           YD+V+FD+P+
Sbjct: 263 YDRVDFDIPI 272


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   YDQVEFDVPV 10
           YD+V+FD+P+
Sbjct: 263 YDRVDFDIPI 272


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 264 YDKMDFDIPV 273


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 264 YDKMDFDIPV 273


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 264 YDKMDFDIPV 273


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 264 YDKMDFDIPV 273


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   YDQVEFDVPV 10
           YD V+FDVPV
Sbjct: 264 YDLVDFDVPV 273


>sp|NUOD_GEOKA|NADH-QUINONE oxidoreductase subunit D|Geobacillus kaustophilus (strain HTA426)

Query: 1   YDQVEFDVPV 10
           YD+ +FDVPV
Sbjct: 239 YDRFDFDVPV 248


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDKLDFDVPV 272


>sp|NUOD_GEOTN|NADH-QUINONE oxidoreductase subunit D|Geobacillus thermodenitrificans (strain

Query: 1   YDQVEFDVPV 10
           YD+ +FDVPV
Sbjct: 238 YDRFDFDVPV 247


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDRMDFDVPV 272


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDKMDFDVPV 272


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDRMDFDVPV 272


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDRMDFDVPV 272


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 264 YDKMDFDIPV 273


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDRMDFDVPV 272


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDRMDFDVPV 272


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDRMDFDVPV 272


>sp|NUOD_BACCN|NADH-QUINONE oxidoreductase subunit D|Bacillus cytotoxicus (strain DSM 22905

Query: 1   YDQVEFDVPV 10
           Y+Q +FDVPV
Sbjct: 238 YNQFDFDVPV 247


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDKLDFDVPV 272


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   YDQVEFDVPV 10
           YD+V+FD+PV
Sbjct: 263 YDRVDFDIPV 272


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDRMDFDVPV 272


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDRMDFDVPV 272


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 264 YDKMDFDIPV 273


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   YDQVEFDVPV 10
           YD+++FDVPV
Sbjct: 263 YDRMDFDVPV 272


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDKLDFDIPV 272


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   YDQVEFDVPV 10
           YD V+FD+P+
Sbjct: 281 YDAVDFDIPL 290


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOCD_SULSY|NADH-QUINONE oxidoreductase subunit C/D|Sulfurihydrogenibium sp. (strain

Query: 1   YDQVEFDVPV 10
           Y +VEFD+PV
Sbjct: 433 YGEVEFDIPV 442


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   YDQVEFDVPV 10
           YD++EF+VP+
Sbjct: 239 YDEMEFEVPI 248


>sp|NUOD_BACMK|NADH-QUINONE oxidoreductase subunit D|Bacillus mycoides (strain KBAB4) (Bacillus

Query: 1   YDQVEFDVPV 10
           YD+ +FDVPV
Sbjct: 238 YDRFDFDVPV 247


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   YDQVEFDVPV 10
           YD V+FD+P+
Sbjct: 281 YDAVDFDIPL 290


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   YDQVEFDVPV 10
           YD V+FD+P+
Sbjct: 281 YDAVDFDIPL 290


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   YDQVEFDVPV 10
           YD V+FD+P+
Sbjct: 281 YDAVDFDIPL 290


>sp|NUOCD_BDEBA|NADH-QUINONE oxidoreductase subunit C/D|Bdellovibrio bacteriovorus (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD ++FDVPV
Sbjct: 408 YDALDFDVPV 417


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRMDFDIPV 272


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDKLDFDIPV 272


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDKLDFDIPV 272


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRMDFDIPV 272


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDKLDFDIPV 272


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   YDQVEFDVPV 10
           YD V+FD+P+
Sbjct: 281 YDAVDFDIPL 290


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   YDQVEFDVPV 10
           YD V+FD+P+
Sbjct: 281 YDAVDFDIPL 290


>sp|NUOD_AKKM8|NADH-QUINONE oxidoreductase subunit D|Akkermansia muciniphila (strain ATCC

Query: 1   YDQVEFDVPV 10
           Y+  EFDVPV
Sbjct: 262 YENYEFDVPV 271


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDRLDFDIPV 272


>sp|NUOCD_AERS4|NADH-QUINONE oxidoreductase subunit C/D|Aeromonas salmonicida (strain A449)

Query: 1   YDQVEFDVPV 10
           YDQ +F+VPV
Sbjct: 449 YDQFDFEVPV 458


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   YDQVEFDVPV 10
           YD+ +FD+PV
Sbjct: 244 YDEFDFDIPV 253


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   YDQVEFDVPV 10
           Y+++EFDVPV
Sbjct: 240 YEEMEFDVPV 249


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 263 YDKMDFDIPV 272


>sp|NUOD_BACAN|NADH-QUINONE oxidoreductase subunit D|Bacillus anthracis

Query: 1   YDQVEFDVPV 10
           YD+ +FD+PV
Sbjct: 238 YDRFDFDIPV 247


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   YDQVEFDVPV 10
           Y+++EFDVPV
Sbjct: 240 YEEMEFDVPV 249


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   YDQVEFDVPV 10
           Y+++EFD+P+
Sbjct: 240 YNEMEFDIPI 249


>sp|NUOD_MYXXD|NADH-QUINONE oxidoreductase subunit D|Myxococcus xanthus (strain DK1622)

Query: 1   YDQVEFDVPV 10
           YD+ +FD+PV
Sbjct: 263 YDRFDFDIPV 272


>sp|NUOD_BACCR|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ATCC 14579

Query: 1   YDQVEFDVPV 10
           YD+ +FD+PV
Sbjct: 238 YDRFDFDIPV 247


>sp|NUOD_BACC1|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ATCC 10987

Query: 1   YDQVEFDVPV 10
           YD+ +FD+PV
Sbjct: 238 YDRFDFDIPV 247


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   YDQVEFDVPV 10
           YD+++F+VP+
Sbjct: 239 YDEIDFEVPI 248


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   YDQVEFDVPV 10
           YD+++FD+PV
Sbjct: 246 YDELKFDIPV 255


>sp|NUOD2_SORC5|NADH-QUINONE oxidoreductase subunit D 2|Sorangium cellulosum (strain So ce56)

Query: 1   YDQVEFDVPV 10
           Y ++EFDVPV
Sbjct: 254 YPELEFDVPV 263


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   YDQVEFDVPV 10
           YD+ EF VPV
Sbjct: 252 YDEFEFQVPV 261


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   YDQVEFDVPV 10
           Y+++EFD+PV
Sbjct: 240 YEEMEFDIPV 249


>sp|NUOD_CAMHC|NADH-QUINONE oxidoreductase subunit D|Campylobacter hominis (strain ATCC BAA-381

Query: 1   YDQVEFDVP 9
           YD+++FDVP
Sbjct: 254 YDELDFDVP 262


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   YDQVEFDVPV 10
           YD+++F+VPV
Sbjct: 237 YDEMDFEVPV 246




64|Sequence|316|325|FDVPVGSRGD

>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   FDVPVGSRGD 10
           FD+PVG+RGD
Sbjct: 258 FDIPVGTRGD 267


>sp|NUOD1_SORC5|NADH-QUINONE oxidoreductase subunit D 1|Sorangium cellulosum (strain So ce56)

Query: 1   FDVPVGSRGD 10
           FDVPVG+RGD
Sbjct: 256 FDVPVGTRGD 265


>sp|NUOD_BACMK|NADH-QUINONE oxidoreductase subunit D|Bacillus mycoides (strain KBAB4) (Bacillus

Query: 1   FDVPVGSRGD 10
           FDVPVGS GD
Sbjct: 243 FDVPVGSTGD 252


>sp|NUOCD_SULSY|NADH-QUINONE oxidoreductase subunit C/D|Sulfurihydrogenibium sp. (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG +GD
Sbjct: 438 FDIPVGEKGD 447


>sp|NUOD_BACAH|NADH-QUINONE oxidoreductase subunit D|Bacillus thuringiensis (strain Al Hakam)

Query: 1   FDVPVGSRGD 10
           FD+PVGS GD
Sbjct: 243 FDIPVGSVGD 252


>sp|NQO4_THET8|NADH-QUINONE oxidoreductase subunit 4|Thermus thermophilus (strain ATCC 27634

Query: 1   FDVPVGSRGD 10
           FDVP+G RGD
Sbjct: 262 FDVPLGERGD 271


>sp|NUOD_THET2|NADH-QUINONE oxidoreductase subunit D|Thermus thermophilus (strain ATCC BAA-163

Query: 1   FDVPVGSRGD 10
           FDVP+G RGD
Sbjct: 262 FDVPLGERGD 271


>sp|NUOD_BACAN|NADH-QUINONE oxidoreductase subunit D|Bacillus anthracis

Query: 1   FDVPVGSRGD 10
           FD+PVGS GD
Sbjct: 243 FDIPVGSVGD 252


>sp|NUOD_BACC1|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ATCC 10987

Query: 1   FDVPVGSRGD 10
           FD+PVGS GD
Sbjct: 243 FDIPVGSVGD 252


>sp|NUOD_BACCR|NADH-QUINONE oxidoreductase subunit D|Bacillus cereus (strain ATCC 14579

Query: 1   FDVPVGSRGD 10
           FD+PVGS GD
Sbjct: 243 FDIPVGSVGD 252


>sp|NUOD_HELPY|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain ATCC 700392

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 260 FDVPVGNYGD 269


>sp|NUOD_HELPS|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain Shi470)

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 260 FDVPVGNYGD 269


>sp|NUOD_HELPJ|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain J99 /

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 260 FDVPVGNYGD 269


>sp|NUOD_HELPH|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain HPAG1)

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 260 FDVPVGNYGD 269


>sp|NUOD_HELPG|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain G27)

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 260 FDVPVGNYGD 269


>sp|NUOD_HELP2|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain P12)

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 260 FDVPVGNYGD 269


>sp|NUOD_HELAH|NADH-QUINONE oxidoreductase subunit D|Helicobacter acinonychis (strain Sheeba)

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 260 FDVPVGNYGD 269


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 286 FDVPVGTNGD 295


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 286 FDVPVGTNGD 295


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 286 FDVPVGTNGD 295


>sp|NUOD1_ANADE|NADH-QUINONE oxidoreductase subunit D 1|Anaeromyxobacter dehalogenans (strain

Query: 1   FDVPVGSRGD 10
           FD+PVGS GD
Sbjct: 283 FDIPVGSNGD 292


>sp|NUOD1_OPITP|NADH-QUINONE oxidoreductase subunit D 1|Opitutus terrae (strain DSM 11246

Query: 1   FDVPVGSRGD 10
           FDVPVG++GD
Sbjct: 278 FDVPVGTKGD 287


>sp|NUOD2_ANASK|NADH-QUINONE oxidoreductase subunit D 2|Anaeromyxobacter sp. (strain K)

Query: 1   FDVPVGSRGD 10
           FD+PVGS GD
Sbjct: 284 FDIPVGSNGD 293


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 268 FDIPVGTNGD 277


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   FDVPVGSRGD 10
           FD+PVGS GD
Sbjct: 249 FDIPVGSTGD 258


>sp|NUOCD_BDEBA|NADH-QUINONE oxidoreductase subunit C/D|Bdellovibrio bacteriovorus (strain ATCC

Query: 1   FDVPVGSRGD 10
           FDVPVG+ GD
Sbjct: 413 FDVPVGTNGD 422


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 268 FDIPVGTNGD 277


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 268 FDIPVGTNGD 277


>sp|NUOD_AKKM8|NADH-QUINONE oxidoreductase subunit D|Akkermansia muciniphila (strain ATCC

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 267 FDVPVGEHGD 276


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGKTGD 277


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 268 FDIPVGTNGD 277


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 268 FDIPVGANGD 277


>sp|NUOD1_HERA2|NADH-QUINONE oxidoreductase subunit D 1|Herpetosiphon aurantiacus (strain ATCC

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 272 FDVPVGQAGD 281


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 268 FDIPVGANGD 277


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 243 FDIPVGQNGD 252


>sp|NUOCD_SHEON|NADH-QUINONE oxidoreductase subunit C/D|Shewanella oneidensis (strain ATCC

Query: 1   FDVPVGSRGD 10
           F+VPVGS GD
Sbjct: 454 FEVPVGSNGD 463


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 286 FDIPVGTNGD 295


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 286 FDIPVGTNGD 295


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 286 FDIPVGTNGD 295


>sp|NUOD2_SYMTH|NADH-QUINONE oxidoreductase subunit D 2|Symbiobacterium thermophilum (strain DSM

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 259 FDIPVGQNGD 268


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKHGD 254


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 286 FDIPVGTNGD 295


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 286 FDIPVGTNGD 295


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   FDVPVGSRGD 10
           FD+P+G+ GD
Sbjct: 268 FDIPIGANGD 277


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   FDVPVGSRGD 10
           FD+P+G+ GD
Sbjct: 268 FDIPIGANGD 277


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   FDVPVGSRGD 10
           FD+P+G+ GD
Sbjct: 268 FDIPIGANGD 277


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 268 FDIPVGTAGD 277


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   FDVPVGSRGD 10
           FD+P+G+ GD
Sbjct: 268 FDIPIGANGD 277


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   FDVPVGSRGD 10
           FD+P+G+ GD
Sbjct: 268 FDIPIGANGD 277


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   FDVPVGSRGD 10
           FD+P+G+ GD
Sbjct: 268 FDIPIGANGD 277


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   FDVPVGSRGD 10
           FD+P+G+ GD
Sbjct: 268 FDIPIGANGD 277


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   FDVPVGSRGD 10
           FD+P+G+ GD
Sbjct: 268 FDIPIGANGD 277


>sp|NUOD_BACCN|NADH-QUINONE oxidoreductase subunit D|Bacillus cytotoxicus (strain DSM 22905

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 243 FDVPVGEVGD 252


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 287 FDIPVGTAGD 296


>sp|NUOCD_AERS4|NADH-QUINONE oxidoreductase subunit C/D|Aeromonas salmonicida (strain A449)

Query: 1   FDVPVGSRGD 10
           F+VPVGS GD
Sbjct: 454 FEVPVGSNGD 463


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGKTGD 277


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVNGD 277


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 245 FDVPVGKNGD 254


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 268 FDIPVGATGD 277


>sp|NUOCD_PHOLL|NADH-QUINONE oxidoreductase subunit C/D|Photorhabdus laumondii subsp. laumondii

Query: 1   FDVPVGSRGD 10
           FDVP+G+ GD
Sbjct: 452 FDVPIGNNGD 461


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 245 FDVPVGKNGD 254


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 259 FDIPVGRHGD 268


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 243 FDIPIGQNGD 252


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 243 FDIPIGQNGD 252


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOCD_HYDS0|NADH-QUINONE oxidoreductase subunit C/D|Hydrogenobaculum sp. (strain Y04AAS1)

Query: 1   FDVPVGSRGD 10
           FDVP+G  GD
Sbjct: 434 FDVPLGENGD 443


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKTGD 277


>sp|NUOCD_CAMFF|NADH-QUINONE oxidoreductase subunit C/D|Campylobacter fetus subsp. fetus (strain

Query: 1   FDVPVGSRGD 10
           F VPVGS GD
Sbjct: 414 FSVPVGSEGD 423


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKNGD 277


>sp|NUOD1_ROSS1|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus sp. (strain RS-1)

Query: 1   FDVPVGSRGD 10
           FD+P+GS GD
Sbjct: 244 FDIPIGSVGD 253


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   FDVPVGSRGD 10
           FDVP+G  GD
Sbjct: 250 FDVPIGKNGD 259


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 251 FDIPVGKNGD 260


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 250 FDIPVGKNGD 259


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKNGD 277


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKTGD 277


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKTGD 277


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKTGD 277


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKTGD 277


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKTGD 277


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   FDVPVGSRGD 10
           F++PVG++GD
Sbjct: 259 FEIPVGTKGD 268


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 269 FDVPVGVNGD 278


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKTGD 277


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVNGD 277


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVNGD 277


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVNGD 277


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVNGD 277


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVNGD 277


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVNGD 277


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   FDVPVGSRGD 10
           FDVP+G  GD
Sbjct: 245 FDVPIGKNGD 254


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVNGD 277


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVNGD 277


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 269 FDVPVGVNGD 278


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 269 FDVPVGVNGD 278


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVTGD 277


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 245 FDIPIGKHGD 254


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKTGD 277


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 269 FDVPVGVNGD 278


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 269 FDVPVGVNGD 278


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 268 FDIPVGAGGD 277


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVNGD 277


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGKTGD 277


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   FDVPVGSRGD 10
           FDVP+G  GD
Sbjct: 247 FDVPIGKNGD 256


>sp|NUOD2_ANADF|NADH-QUINONE oxidoreductase subunit D 2|Anaeromyxobacter sp. (strain Fw109-5)

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 284 FDIPVGTNGD 293


>sp|NUOCD_CERSK|NADH-QUINONE oxidoreductase subunit C/D|Cereibacter sphaeroides (strain KD131 /

Query: 1   FDVPVGSRGD 10
           F+VP+G RGD
Sbjct: 433 FEVPLGQRGD 442


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 269 FDIPVGVNGD 278


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 268 FDIPIGREGD 277


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 268 FDIPIGREGD 277


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 268 FDIPIGREGD 277


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 268 FDIPIGREGD 277


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 269 FDIPVGVNGD 278


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 268 FDIPIGREGD 277


>sp|NUOCD_CERS4|NADH-QUINONE oxidoreductase subunit C/D|Cereibacter sphaeroides (strain ATCC

Query: 1   FDVPVGSRGD 10
           F+VP+G RGD
Sbjct: 433 FEVPLGQRGD 442


>sp|NUOCD_CERS1|NADH-QUINONE oxidoreductase subunit C/D|Cereibacter sphaeroides (strain ATCC

Query: 1   FDVPVGSRGD 10
           F+VP+G RGD
Sbjct: 433 FEVPLGQRGD 442


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGMTGD 277


>sp|NUOD_MYXXD|NADH-QUINONE oxidoreductase subunit D|Myxococcus xanthus (strain DK1622)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGEHGD 277


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   FDVPVGSRGD 10
           F VPVGS GD
Sbjct: 248 FKVPVGSNGD 257


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 269 FDIPVGVNGD 278


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 247 FDIPIGKNGD 256


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOCD_CERS5|NADH-QUINONE oxidoreductase subunit C/D|Cereibacter sphaeroides (strain ATCC

Query: 1   FDVPVGSRGD 10
           F+VP+G RGD
Sbjct: 433 FEVPLGQRGD 442


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 269 FDIPVGVNGD 278


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 269 FDIPVGVNGD 278


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   FDVPVGSRGD 10
           F VPVGS GD
Sbjct: 251 FKVPVGSNGD 260


>sp|NUCD1_AQUAE|NADH-QUINONE oxidoreductase subunit C/D 1|Aquifex aeolicus (strain VF5)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 457 FDIPVGEIGD 466


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 251 FDIPIGKNGD 260


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 269 FDIPVGVNGD 278


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 245 FDIPIGKNGD 254


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   FDVPVGSRGD 10
           FD+PVG+ GD
Sbjct: 256 FDIPVGTSGD 265


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 265 FDIPIGKNGD 274


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 245 FDIPIGKNGD 254


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 251 FDIPIGKNGD 260


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   FDVPVGSRGD 10
           F+VPVG  GD
Sbjct: 242 FEVPVGKNGD 251


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 286 FDIPLGKEGD 295


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 245 FDIPIGKNGD 254


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 245 FDIPIGKNGD 254


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVGGD 277


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 247 FDIPIGKNGD 256


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 254 FDIPIGKNGD 263


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 245 FDIPIGKNGD 254


>sp|NUOCD_METCA|NADH-QUINONE oxidoreductase subunit C/D|Methylococcus capsulatus (strain ATCC

Query: 1   FDVPVGSRGD 10
           FDVP G+ GD
Sbjct: 440 FDVPTGTNGD 449


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVTGD 277


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVGGD 277


>sp|NUCD2_AQUAE|NADH-QUINONE oxidoreductase subunit C/D 2|Aquifex aeolicus (strain VF5)

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 435 FDIPVGEVGD 444


>sp|NUOD_DESRM|NADH-QUINONE oxidoreductase subunit D|Desulforamulus reducens (strain ATCC

Query: 1   FDVPVGSRGD 10
           F+VP+G++GD
Sbjct: 244 FEVPLGTKGD 253


>sp|NUOD2_ROSCS|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus castenholzii (strain DSM

Query: 1   FDVPVGSRGD 10
           FD+P+GS GD
Sbjct: 244 FDIPIGSVGD 253


>sp|NUOD_PELPD|NADH-QUINONE oxidoreductase subunit D|Pelobacter propionicus (strain DSM 2379

Query: 1   FDVPVGSRGD 10
           F+VPVG +GD
Sbjct: 256 FEVPVGIKGD 265


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVGGD 277


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 286 FDIPLGKEGD 295


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   FDVPVGSRGD 10
           FDVPVG  GD
Sbjct: 268 FDVPVGVGGD 277


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 245 FDIPIGKNGD 254


>sp|NUOCD_AERHH|NADH-QUINONE oxidoreductase subunit C/D|Aeromonas hydrophila subsp. hydrophila

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 454 FEVPVGANGD 463


>sp|NUOCD_YERE8|NADH-QUINONE oxidoreductase subunit C/D|Yersinia enterocolitica serotype O:8 /

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 451 FEVPVGNNGD 460


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   FDVPVGSRGD 10
           F++P+G +GD
Sbjct: 246 FEIPIGKKGD 255


>sp|NUOCD_YERPY|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pseudotuberculosis serotype O:3

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 451 FEVPVGNNGD 460


>sp|NUOCD_YERPS|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pseudotuberculosis serotype I

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 451 FEVPVGNNGD 460


>sp|NUOCD_YERPP|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pestis (strain Pestoides F)

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 451 FEVPVGNNGD 460


>sp|NUOCD_YERPN|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pestis bv. Antiqua (strain

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 451 FEVPVGNNGD 460


>sp|NUOCD_YERPG|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pestis bv. Antiqua (strain

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 451 FEVPVGNNGD 460


>sp|NUOCD_YERPE|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pestis

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 451 FEVPVGNNGD 460


>sp|NUOCD_YERPB|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pseudotuberculosis serotype IB

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 451 FEVPVGNNGD 460


>sp|NUOCD_YERPA|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pestis bv. Antiqua (strain

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 451 FEVPVGNNGD 460


>sp|NUOCD_YERP3|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pseudotuberculosis serotype

Query: 1   FDVPVGSRGD 10
           F+VPVG+ GD
Sbjct: 451 FEVPVGNNGD 460


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   FDVPVGSRGD 10
           F+VP+G  GD
Sbjct: 244 FEVPIGKNGD 253


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 268 FDIPVGVNGD 277


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGKNGD 254


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 268 FDIPIGVNGD 277


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   FDVPVGSRGD 10
           FD+PVG  GD
Sbjct: 245 FDIPVGRHGD 254


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   FDVPVGSRGD 10
           FD+P G+ GD
Sbjct: 245 FDIPTGANGD 254


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 253 FDIPIGKHGD 262


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 253 FDIPIGKHGD 262


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 1   FDVPVGSRGD 10
           F+VP+G +GD
Sbjct: 250 FEVPLGEKGD 259


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   FDVPVGSRGD 10
           F+VP+G  GD
Sbjct: 242 FEVPIGKNGD 251


>sp|NUOD1_KORVE|NADH-QUINONE oxidoreductase subunit D 1|Koribacter versatilis (strain Ellin345)

Query: 1   FDVPVGSRGD 10
           FDVP G  GD
Sbjct: 259 FDVPTGENGD 268


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   FDVPVGSRGD 10
           F+VP+G  GD
Sbjct: 244 FEVPIGKNGD 253


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   FDVPVGSRGD 10
           FD+P+G  GD
Sbjct: 249 FDIPLGKNGD 258


>sp|NUOCD_RHOPB|NADH-QUINONE oxidoreductase subunit C/D|Rhodopseudomonas palustris (strain

Query: 1   FDVPVGSRGD 10
           F+VP G RGD
Sbjct: 434 FEVPTGHRGD 443




65|Sequence|321|330|GSRGDCYDRY

>sp|NUOD1_OPITP|NADH-QUINONE oxidoreductase subunit D 1|Opitutus terrae (strain DSM 11246

Query: 1   GSRGDCYDRY 10
           G++GDCYDRY
Sbjct: 283 GTKGDCYDRY 292


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   GSRGDCYDRY 10
           G +GDCYDRY
Sbjct: 251 GEKGDCYDRY 260


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   GSRGDCYDRY 10
           GS GDCYDRY
Sbjct: 256 GSNGDCYDRY 265


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   GSRGDCYDRY 10
           G+RGDCYDR+
Sbjct: 263 GTRGDCYDRF 272


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   GSRGDCYDRY 10
           G +GDCYDRY
Sbjct: 251 GEKGDCYDRY 260


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   GSRGDCYDRY 10
           G +GDCYDRY
Sbjct: 251 GKKGDCYDRY 260


>sp|NUOD_DESRM|NADH-QUINONE oxidoreductase subunit D|Desulforamulus reducens (strain ATCC

Query: 1   GSRGDCYDRY 10
           G++GDC+DRY
Sbjct: 249 GTKGDCFDRY 258


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 247 GKNGDCYDRY 256


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 249 GKNGDCYDRY 258


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 249 GKNGDCYDRY 258


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 247 GKNGDCYDRY 256


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 249 GKNGDCYDRY 258


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 249 GKNGDCYDRY 258


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 249 GKNGDCYDRY 258


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 249 GKNGDCYDRY 258


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 249 GKNGDCYDRY 258


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 249 GKNGDCYDRY 258


>sp|NUOCD_HYDS0|NADH-QUINONE oxidoreductase subunit C/D|Hydrogenobaculum sp. (strain Y04AAS1)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 439 GENGDCYDRY 448


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GTNGDCYDRY 282


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GTNGDCYDRY 282


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GTNGDCYDRY 282


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 248 GQNGDCYDRY 257


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 249 GKNGDCYDRY 258


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 248 GQNGDCYDRY 257


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 248 GQNGDCYDRY 257


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GANGDCYDRY 282


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 250 GANGDCYDRY 259


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GANGDCYDRY 282


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GANGDCYDRY 282


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GANGDCYDRY 282


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GANGDCYDRY 282


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GANGDCYDRY 282


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GANGDCYDRY 282


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GANGDCYDRY 282


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GANGDCYDRY 282


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 272 GKNGDCYDRY 281


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 254 GKNGDCYDRY 263


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 252 GKNGDCYDRY 261


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GANGDCYDRY 282


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 254 GKNGDCYDRY 263


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKHGDCYDRY 259


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKHGDCYDRY 259


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 252 GKNGDCYDRY 261


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 251 GENGDCYDRY 260


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 254 GKNGDCYDRY 263


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 259 GKNGDCYDRY 268


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 252 GKNGDCYDRY 261


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 256 GKNGDCYDRY 265


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 262 GKNGDCYDRY 271


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 256 GKNGDCYDRY 265


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 256 GKNGDCYDRY 265


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 256 GKNGDCYDRY 265


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 258 GKHGDCYDRY 267


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 258 GRNGDCYDRY 267


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 258 GKHGDCYDRY 267


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTNGDCYDRY 300


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTNGDCYDRY 300


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTNGDCYDRY 300


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTNGDCYDRY 300


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTNGDCYDRY 300


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 259 GKNGDCYDRY 268


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 261 GKNGDCYDRY 270


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTNGDCYDRY 300


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTNGDCYDRY 300


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTNGDCYDRY 300


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 270 GKNGDCYDRY 279


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 259 GKNGDCYDRY 268


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GTNGDCYDRY 282


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GATGDCYDRY 282


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 268 GKNGDCYDRY 277


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 261 GKNGDCYDRY 270


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUCD1_AQUAE|NADH-QUINONE oxidoreductase subunit C/D 1|Aquifex aeolicus (strain VF5)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 462 GEIGDCYDRY 471


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 291 GKEGDCYDRY 300


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 255 GKNGDCYDRY 264


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 256 GKNGDCYDRY 265


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 250 GKNGDCYDRY 259


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 291 GKEGDCYDRY 300


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD_METI4|NADH-QUINONE oxidoreductase subunit D|Methylacidiphilum infernorum (isolate V4)

Query: 1   GSRGDCYDRY 10
           GS GDC+DRY
Sbjct: 276 GSVGDCFDRY 285


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 292 GTAGDCYDRY 301


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 260 GKNGDCYDRY 269


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GREGDCYDRY 282


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GREGDCYDRY 282


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GREGDCYDRY 282


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKNGDCYDRY 282


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   GSRGDCYDRY 10
           G+ GDCYDR+
Sbjct: 261 GTSGDCYDRF 270


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 262 GKNGDCYDRY 271


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GREGDCYDRY 282


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GREGDCYDRY 282


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   GSRGDCYDR 9
           G++GDCYDR
Sbjct: 264 GTKGDCYDR 272


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   GSRGDCYDRY 10
           GS GDCYDRY
Sbjct: 253 GSNGDCYDRY 262


>sp|NUOCD_RHOPB|NADH-QUINONE oxidoreductase subunit C/D|Rhodopseudomonas palustris (strain

Query: 1   GSRGDCYDR 9
           G RGDCYDR
Sbjct: 439 GHRGDCYDR 447


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 273 GAGGDCYDRY 282


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKNGDCYDRY 282


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 267 GVNGDCYDRY 276


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 268 GRNGDCYDRY 277


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   GSRGDCYDRY 10
           G  GDC+DRY
Sbjct: 249 GKNGDCFDRY 258


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVNGDCYDRY 282


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GKTGDCYDRY 282


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_AKKM8|NADH-QUINONE oxidoreductase subunit D|Akkermansia muciniphila (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDR+
Sbjct: 272 GEHGDCYDRF 281


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 268 GRNGDCYDRY 277


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 269 GKNGDCYDRY 278


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 3   RGDCYDRY 10
           +GDCYDRY
Sbjct: 276 QGDCYDRY 283


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 274 GVNGDCYDRY 283


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTCGDCYDRY 300


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTCGDCYDRY 300


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTCGDCYDRY 300


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   GSRGDCYDRY 10
           G+ GDCYDRY
Sbjct: 291 GTCGDCYDRY 300


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   GSRGDCYDRY 10
           GS GDCY RY
Sbjct: 254 GSTGDCYARY 263


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCYDRY
Sbjct: 273 GVGGDCYDRY 282


>sp|NUOCD_YERPY|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pseudotuberculosis serotype O:3

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 456 GNNGDCYDR 464


>sp|NUOCD_YERPS|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pseudotuberculosis serotype I

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 456 GNNGDCYDR 464


>sp|NUOCD_YERPP|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pestis (strain Pestoides F)

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 456 GNNGDCYDR 464


>sp|NUOCD_YERPN|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pestis bv. Antiqua (strain

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 456 GNNGDCYDR 464


>sp|NUOCD_YERPG|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pestis bv. Antiqua (strain

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 456 GNNGDCYDR 464


>sp|NUOCD_YERPE|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pestis

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 456 GNNGDCYDR 464


>sp|NUOCD_YERPB|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pseudotuberculosis serotype IB

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 456 GNNGDCYDR 464


>sp|NUOCD_YERPA|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pestis bv. Antiqua (strain

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 456 GNNGDCYDR 464


>sp|NUOCD_YERP3|NADH-QUINONE oxidoreductase subunit C/D|Yersinia pseudotuberculosis serotype

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 456 GNNGDCYDR 464


>sp|NUOCD_YERE8|NADH-QUINONE oxidoreductase subunit C/D|Yersinia enterocolitica serotype O:8 /

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 456 GNNGDCYDR 464


>sp|NUOCD_PHOLL|NADH-QUINONE oxidoreductase subunit C/D|Photorhabdus laumondii subsp. laumondii

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 457 GNNGDCYDR 465


>sp|NUOCD_METCA|NADH-QUINONE oxidoreductase subunit C/D|Methylococcus capsulatus (strain ATCC

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 445 GTNGDCYDR 453


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   GSRGDCYDRY 10
           G   DCYDRY
Sbjct: 250 GKNSDCYDRY 259


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   GSRGDCYDRY 10
           G   DCYDRY
Sbjct: 250 GKNSDCYDRY 259


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   GSRGDCYDRY 10
           G   DCYDRY
Sbjct: 250 GKNSDCYDRY 259


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   GSRGDCYDRY 10
           G   DCYDRY
Sbjct: 250 GKNSDCYDRY 259


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   GSRGDCYDRY 10
           G  GDC+DRY
Sbjct: 250 GKNGDCFDRY 259


>sp|NUOD1_ANADF|NADH-QUINONE oxidoreductase subunit D 1|Anaeromyxobacter sp. (strain Fw109-5)

Query: 1   GSRGDCYDRY 10
           G+ GDC+DRY
Sbjct: 262 GTVGDCFDRY 271


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   GSRGDCYDRY 10
           G  GDC+DRY
Sbjct: 250 GKNGDCFDRY 259


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   GSRGDCYDRY 10
           G+ GDCY RY
Sbjct: 273 GTAGDCYSRY 282


>sp|NUOCD_SULSY|NADH-QUINONE oxidoreductase subunit C/D|Sulfurihydrogenibium sp. (strain

Query: 1   GSRGDCYDRY 10
           G +GD YDRY
Sbjct: 443 GEKGDSYDRY 452


>sp|NUOD_CARHZ|NADH-QUINONE oxidoreductase subunit D|Carboxydothermus hydrogenoformans (strain

Query: 1   GSRGDCYDRY 10
           G+ GDC+DR+
Sbjct: 248 GANGDCWDRF 257


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 1   GSRGDCYDRY 10
           G +GD YDRY
Sbjct: 255 GEKGDTYDRY 264


>sp|NUOCD_RHOP2|NADH-QUINONE oxidoreductase subunit C/D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   GSRGDCYDR 9
           G  GDCYDR
Sbjct: 439 GHNGDCYDR 447


>sp|NUOCD_PROMH|NADH-QUINONE oxidoreductase subunit C/D|Proteus mirabilis (strain HI4320)

Query: 1   GSRGDCYDR 9
            S GDCYDR
Sbjct: 456 ASNGDCYDR 464


>sp|NUOCD_RHOP5|NADH-QUINONE oxidoreductase subunit C/D|Rhodopseudomonas palustris (strain

Query: 1   GSRGDCYDR 9
           G+ GDCYDR
Sbjct: 439 GNNGDCYDR 447


>sp|NUOCD_EDWI9|NADH-QUINONE oxidoreductase subunit C/D|Edwardsiella ictaluri (strain 93-146)

Query: 1   GSRGDCYDR 9
            S GDCYDR
Sbjct: 456 ASNGDCYDR 464


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   GSRGDCYDRY 10
           G+  DCYDR+
Sbjct: 261 GTNSDCYDRF 270


>sp|NUOCD_NITMU|NADH-QUINONE oxidoreductase subunit C/D|Nitrosospira multiformis (strain ATCC

Query: 1   GSRGDCYDR 9
           G  GDCYDR
Sbjct: 466 GQHGDCYDR 474


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   GSRGDCYDRY 10
           GS GD YDRY
Sbjct: 246 GSCGDSYDRY 255


>sp|NUOCD_RHOPT|NADH-QUINONE oxidoreductase subunit C/D|Rhodopseudomonas palustris (strain

Query: 1   GSRGDCYDR 9
           G  GDCYDR
Sbjct: 439 GHAGDCYDR 447


>sp|NUOCD_RHOPA|NADH-QUINONE oxidoreductase subunit C/D|Rhodopseudomonas palustris (strain ATCC

Query: 1   GSRGDCYDR 9
           G  GDCYDR
Sbjct: 439 GHAGDCYDR 447


>sp|NUOD1_SORC5|NADH-QUINONE oxidoreductase subunit D 1|Sorangium cellulosum (strain So ce56)

Query: 1   GSRGDCYDRY 10
           G+RGD YDR+
Sbjct: 261 GTRGDNYDRF 270


>sp|NUOD_CAMC1|NADH-QUINONE oxidoreductase subunit D|Campylobacter concisus (strain 13826)

Query: 1   GSRGDCYDRY 10
            ++GDCY RY
Sbjct: 265 ATKGDCYARY 274


>sp|NUOD2_CHLAA|NADH-QUINONE oxidoreductase subunit D 2|Chloroflexus aurantiacus (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GD YDRY
Sbjct: 266 GKNGDIYDRY 275


>sp|NUOD_HELPS|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain Shi470)

Query: 1   GSRGDCYDRY 10
           G+ GD YDRY
Sbjct: 265 GNYGDSYDRY 274


>sp|NUOD_HELPY|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain ATCC 700392

Query: 1   GSRGDCYDRY 10
           G+ GD YDRY
Sbjct: 265 GNYGDSYDRY 274


>sp|NUOD_HELPH|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain HPAG1)

Query: 1   GSRGDCYDRY 10
           G+ GD YDRY
Sbjct: 265 GNYGDSYDRY 274


>sp|NUOD_HELAH|NADH-QUINONE oxidoreductase subunit D|Helicobacter acinonychis (strain Sheeba)

Query: 1   GSRGDCYDRY 10
           G+ GD YDRY
Sbjct: 265 GNYGDSYDRY 274


>sp|NUOD_HELPJ|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain J99 /

Query: 1   GSRGDCYDRY 10
           G+ GD YDRY
Sbjct: 265 GNYGDSYDRY 274


>sp|NUOD_HELPG|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain G27)

Query: 1   GSRGDCYDRY 10
           G+ GD YDRY
Sbjct: 265 GNYGDSYDRY 274


>sp|NUOD_HELP2|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain P12)

Query: 1   GSRGDCYDRY 10
           G+ GD YDRY
Sbjct: 265 GNYGDSYDRY 274


>sp|NUOD1_CYTH3|NADH-QUINONE oxidoreductase subunit D 1|Cytophaga hutchinsonii (strain ATCC

Query: 1   GSRGDCYDR 9
           G+ GDC+DR
Sbjct: 267 GTTGDCWDR 275


>sp|NUOCD_BDEBA|NADH-QUINONE oxidoreductase subunit C/D|Bdellovibrio bacteriovorus (strain ATCC

Query: 1   GSRGDCYDRY 10
           G+ GD YDRY
Sbjct: 418 GTNGDIYDRY 427


>sp|NUOD_BACMK|NADH-QUINONE oxidoreductase subunit D|Bacillus mycoides (strain KBAB4) (Bacillus

Query: 1   GSRGDCYDRY 10
           GS GD +DRY
Sbjct: 248 GSTGDAWDRY 257


>sp|NUOD1_HERA2|NADH-QUINONE oxidoreductase subunit D 1|Herpetosiphon aurantiacus (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GD YDRY
Sbjct: 277 GQAGDIYDRY 286


>sp|NUOD1_THEYD|NADH-QUINONE oxidoreductase subunit D 1|Thermodesulfovibrio yellowstonii (strain

Query: 1   GSRGDCYDRY 10
           G  GD YDRY
Sbjct: 252 GKNGDIYDRY 261


>sp|NUOCD_SHEON|NADH-QUINONE oxidoreductase subunit C/D|Shewanella oneidensis (strain ATCC

Query: 1   GSRGDCYDR 9
           GS GD YDR
Sbjct: 459 GSNGDAYDR 467


>sp|NUOCD_AERS4|NADH-QUINONE oxidoreductase subunit C/D|Aeromonas salmonicida (strain A449)

Query: 1   GSRGDCYDR 9
           GS GD YDR
Sbjct: 459 GSNGDAYDR 467


>sp|NUOD_MYXXD|NADH-QUINONE oxidoreductase subunit D|Myxococcus xanthus (strain DK1622)

Query: 1   GSRGDCYDRY 10
           G  GD YDRY
Sbjct: 273 GEHGDNYDRY 282


>sp|NUOD_CLOB8|NADH-QUINONE oxidoreductase subunit D|Clostridium beijerinckii (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GDCY+R+
Sbjct: 253 GKDGDCYERW 262


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   GSRGDCYDRY 10
           G  GD YDRY
Sbjct: 273 GVNGDSYDRY 282


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   GSRGDCYDRY 10
           G  GD YDRY
Sbjct: 250 GKNGDGYDRY 259


>sp|NUOD2_SORC5|NADH-QUINONE oxidoreductase subunit D 2|Sorangium cellulosum (strain So ce56)

Query: 1   GSRGDCYDRY 10
           G+ GDC+DR+
Sbjct: 269 GTVGDCWDRF 278


>sp|NUOD2_ANASK|NADH-QUINONE oxidoreductase subunit D 2|Anaeromyxobacter sp. (strain K)

Query: 1   GSRGDCYDRY 10
           GS GD +DRY
Sbjct: 289 GSNGDNFDRY 298


>sp|NUOD1_ANADE|NADH-QUINONE oxidoreductase subunit D 1|Anaeromyxobacter dehalogenans (strain

Query: 1   GSRGDCYDRY 10
           GS GD +DRY
Sbjct: 288 GSNGDNFDRY 297


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   GSRGDCYDRY 10
           G  GD YDRY
Sbjct: 255 GKNGDSYDRY 264


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   GSRGDCYDRY 10
           G  GD YDRY
Sbjct: 273 GVNGDSYDRY 282


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   GSRGDCYDRY 10
           G  GD YDRY
Sbjct: 273 GVNGDSYDRY 282


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   GSRGDCYDRY 10
           G  GD YDRY
Sbjct: 273 GVNGDTYDRY 282




66|Sequence|326|335|CYDRYLCRVE

>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 279 CYDRYLCRME 288


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 279 CYDRYLCRME 288


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 279 CYDRYLCRME 288


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 279 CYDRYLCRME 288


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 279 CYDRYLCRME 288


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 279 CYDRYLCRME 288


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   CYDRYLCRVE 10
           C+DRYLCR+E
Sbjct: 254 CFDRYLCRIE 263


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 278 CYDRYLCRME 287


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   CYDRYLCRV 9
           CYDRYLCRV
Sbjct: 296 CYDRYLCRV 304


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   CYDRYLCRV 9
           CYDRYLCRV
Sbjct: 296 CYDRYLCRV 304


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   CYDRYLCRVE 10
           CYDRYLCR++
Sbjct: 277 CYDRYLCRMQ 286


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   CYDRYLCRV 9
           CYDRYLCRV
Sbjct: 297 CYDRYLCRV 305


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   CYDRYLCRVE 10
           CYDRYLCR++
Sbjct: 259 CYDRYLCRMQ 268


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   CYDRYLCRV 9
           CYDRYLCRV
Sbjct: 296 CYDRYLCRV 304


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   CYDRYLCRV 9
           CYDRYLCRV
Sbjct: 296 CYDRYLCRV 304


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 263 CYDRYLVRVE 272


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUCD1_AQUAE|NADH-QUINONE oxidoreductase subunit C/D 1|Aquifex aeolicus (strain VF5)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 467 CYDRYLVRIE 476


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOCD_HYDS0|NADH-QUINONE oxidoreductase subunit C/D|Hydrogenobaculum sp. (strain Y04AAS1)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 444 CYDRYLVRIE 453


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 261 CYDRYLCRME 270


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 267 CYDRYLCRME 276


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 264 CYDRYLCRME 273


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 266 CYDRYLCRME 275


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 264 CYDRYLCRME 273


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 255 CYDRYLCRME 264


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   CYDRYLCRVE 10
           CYDRYLCR+E
Sbjct: 278 CYDRYLCRME 287


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 259 CYDRYLIRIE 268


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 259 CYDRYLIRIE 268


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 267 CYDRYLVRME 276


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 257 CYDRYLIRME 266


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 257 CYDRYLIRME 266


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLLRME 264


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRME 287


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   CYDRYLCRVE 10
           CYDRYL RV+
Sbjct: 278 CYDRYLVRVQ 287


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 265 CYDRYLVRME 274


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   CYDRYLCRVE 10
           CYDRYL RV+
Sbjct: 278 CYDRYLVRVQ 287


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 261 CYDRYLIRME 270


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 253 CYDRYLVRME 262


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 261 CYDRYLIRME 270


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 257 CYDRYLIRME 266


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 278 CYDRYLVRV 286


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 278 CYDRYLVRV 286


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   CYDRYLCRVE 10
           CYDRYLCR++
Sbjct: 272 CYDRYLCRMQ 281


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 296 CYDRYLVRV 304


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 279 CYDRYLIRV 287


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 296 CYDRYLVRV 304


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 296 CYDRYLVRV 304


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 296 CYDRYLVRV 304


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 296 CYDRYLVRV 304


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 279 CYDRYLVRV 287


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 279 CYDRYLVRV 287


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 279 CYDRYLVRV 287


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   CYDRYLCRVE 10
           CYDR++ RVE
Sbjct: 268 CYDRFMVRVE 277


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   CYDRYLCRVE 10
           CYDRY  RVE
Sbjct: 264 CYDRYCIRVE 273


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 2   YDRYLCRV 9
           YDRYLCR+
Sbjct: 261 YDRYLCRI 268


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   CYDRYLCRVE 10
           CYDRYL RVE
Sbjct: 278 CYDRYLVRVE 287


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 279 CYDRYLVRV 287


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 296 CYDRYLVRV 304


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   CYDRYLCRVE 10
           CY RYL RVE
Sbjct: 278 CYSRYLVRVE 287


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 296 CYDRYLVRV 304


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 296 CYDRYLVRV 304


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 296 CYDRYLVRV 304


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 252 CYDRYLVRI 260


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 252 CYDRYLVRI 260


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 254 CYDRYLVRI 262


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   CYDRYLCRVE 10
           CYDR++ RVE
Sbjct: 266 CYDRFMVRVE 275


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 278 CYDRYLVRV 286


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 296 CYDRYLVRI 304


>sp|NUOD_METI4|NADH-QUINONE oxidoreductase subunit D|Methylacidiphilum infernorum (isolate V4)

Query: 1   CYDRYLCRVE 10
           C+DRY+ R+E
Sbjct: 281 CFDRYMVRIE 290


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   CYDRYLCRV 9
           CYDRYLCR+
Sbjct: 273 CYDRYLCRM 281


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   CYDRYLCRV 9
           CYDRYLCR+
Sbjct: 273 CYDRYLCRM 281


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   CYDRYLCRV 9
           CYDRYLCR+
Sbjct: 274 CYDRYLCRM 282


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 278 CYDRYLVRIE 287


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   CYDRYLCRVE 10
           CYDRYL R++
Sbjct: 266 CYDRYLVRMQ 275


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 279 CYDRYLVRI 287


>sp|NUOD1_OPITP|NADH-QUINONE oxidoreductase subunit D 1|Opitutus terrae (strain DSM 11246

Query: 1   CYDRYLCRVE 10
           CYDRYL R E
Sbjct: 288 CYDRYLVRGE 297


>sp|NUOD_NOCFA|NADH-QUINONE oxidoreductase subunit D|Nocardia farcinica (strain IFM 10152)

Query: 1   CYDRYLCRVE 10
           CY RYL RVE
Sbjct: 300 CYGRYLIRVE 309


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   CYDRYLCRVE 10
           CY RYL RVE
Sbjct: 278 CYARYLVRVE 287


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   CYDRYLCRVE 10
           CY RYL RVE
Sbjct: 278 CYARYLVRVE 287


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   CYDRYLCRVE 10
           CY RYL RVE
Sbjct: 278 CYARYLVRVE 287


>sp|NUBCD_SYNFM|NADH-QUINONE oxidoreductase subunit B/C/D|Syntrophobacter fumaroxidans (strain

Query: 1   CYDRYLCRVE 10
           CY RYL RVE
Sbjct: 650 CYARYLVRVE 659


>sp|NUOCD_RHOP5|NADH-QUINONE oxidoreductase subunit C/D|Rhodopseudomonas palustris (strain

Query: 1   CYDRYLCRVE 10
           CYDR L RVE
Sbjct: 444 CYDRVLVRVE 453


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 254 CYDRYLVRM 262


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 254 CYDRYLVRM 262


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 273 CYDRYLVRM 281


>sp|NUOD1_HERA2|NADH-QUINONE oxidoreductase subunit D 1|Herpetosiphon aurantiacus (strain ATCC

Query: 2   YDRYLCRVE 10
           YDRY CRV+
Sbjct: 283 YDRYRCRVQ 291


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLVRME 264


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 255 CYDRYLVRM 263


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLVRME 264


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 278 CYDRYLVRM 286


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 253 CYDRYLVRM 261


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 278 CYDRYLVRM 286


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 278 CYDRYLVRM 286


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 278 CYDRYLVRM 286


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 278 CYDRYLVRM 286


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 278 CYDRYLVRM 286


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 278 CYDRYLVRM 286


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 278 CYDRYLVRM 286


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 278 CYDRYLVRM 286


>sp|NUBCD_GEOUR|NADH-QUINONE oxidoreductase subunit B/C/D|Geotalea uraniireducens (strain Rf4)

Query: 1   CYDRYLCRVE 10
           CY RYL R+E
Sbjct: 656 CYARYLVRIE 665


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   CYDRYLCRVE 10
           CYDRYL R+E
Sbjct: 255 CYDRYLIRME 264


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 256 CYDRYLVRM 264


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 253 CYDRYLVRM 261


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 256 CYDRYLVRM 264


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 261 CYDRYLVRM 269


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 256 CYDRYLVRM 264


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 2   YDRYLCRVE 10
           YDRYL RVE
Sbjct: 279 YDRYLVRVE 287


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   CYDRYLCRVE 10
           CYDRY  R+E
Sbjct: 255 CYDRYCIRME 264


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 256 CYDRYLVRM 264


>sp|NUOD_AKKM8|NADH-QUINONE oxidoreductase subunit D|Akkermansia muciniphila (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDR+  R+E
Sbjct: 277 CYDRFTVRIE 286


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   CYDRYLCRV 9
           CYDRYL RV
Sbjct: 278 CYDRYLVRV 286


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRY  R+E
Sbjct: 261 CYDRYHIRME 270


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   CYDRYLCRVE 10
           CYDRY  R+E
Sbjct: 261 CYDRYHIRME 270


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   CYDRYLCRVE 10
           CY RYL R+E
Sbjct: 259 CYARYLVRME 268


>sp|NUOD_SACEN|NADH-QUINONE oxidoreductase subunit D|Saccharopolyspora erythraea (strain ATCC

Query: 1   CYDRYLCRVE 10
           CY RYL R+E
Sbjct: 296 CYARYLLRLE 305


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 2   YDRYLCRVE 10
           YDRYL R+E
Sbjct: 261 YDRYLVRIE 269


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRY+ R+E
Sbjct: 263 CYDRYVVRME 272


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   CYDRYLCRVE 10
           CYDRY+ R+E
Sbjct: 263 CYDRYVVRME 272


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   CYDRYLCRVE 10
           CYDRYL R++
Sbjct: 255 CYDRYLIRMQ 264


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   CYDRYLCRVE 10
           CYDR + R+E
Sbjct: 269 CYDRVMVRIE 278


>sp|DOSP_ECOLI|OXYGEN sensor protein DosP|Escherichia coli (strain K12)

Query: 3   DRYLCRVE 10
           D+YLCR+E
Sbjct: 444 DQYLCRIE 451


>sp|NUOD2_RHIME|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium meliloti (strain 1021)

Query: 1   CYDRYLCRVE 10
           CY R+LCRV+
Sbjct: 266 CYSRWLCRVD 275


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   CYDRYLCRVE 10
            YDRYL RVE
Sbjct: 278 SYDRYLVRVE 287


>sp|NUOD2_SINMW|NADH-QUINONE oxidoreductase subunit D 2|Sinorhizobium medicae (strain WSM419)

Query: 1   CYDRYLCRVE 10
           CY R+LCRV+
Sbjct: 266 CYARWLCRVD 275


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   CYDRYLCRV 9
           CYDRYL R+
Sbjct: 258 CYDRYLVRM 266




67|Sequence|331|340|LCRVEEMRQS

>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 284 LCRMEEMRQS 293


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 284 LCRMEEMRQS 293


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 284 LCRMEEMRQS 293


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 284 LCRMEEMRQS 293


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 284 LCRMEEMRQS 293


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 283 LCRMEEMRQS 292


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 284 LCRMEEMRQS 293


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 283 LCRMEEMRQS 292


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   LCRVEEMRQS 10
           LCR+EEMR+S
Sbjct: 259 LCRIEEMRES 268


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 272 LCRMEEMRQS 281


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 269 LCRMEEMRQS 278


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 271 LCRMEEMRQS 280


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 269 LCRMEEMRQS 278


>sp|NUOCD_ALIB4|NADH-QUINONE oxidoreductase subunit C/D|Aliarcobacter butzleri (strain RM4018)

Query: 1   LCRVEEMRQS 10
           +CR EEMRQS
Sbjct: 412 MCRFEEMRQS 421


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   LCRVEEMRQS 10
           LCR+EEMRQS
Sbjct: 260 LCRMEEMRQS 269


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 1   LCRVEEMRQS 10
           LCR+ EMRQS
Sbjct: 265 LCRIREMRQS 274


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   LCRVEEMRQS 10
           LCR+EEMR+S
Sbjct: 266 LCRMEEMRES 275


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   LCRVEEMRQS 10
           LCRV EMRQS
Sbjct: 302 LCRVAEMRQS 311


>sp|NUOCD_RHOP5|NADH-QUINONE oxidoreductase subunit C/D|Rhodopseudomonas palustris (strain

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 449 LVRVEEMRQS 458


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 268 LVRVEEMRQS 277


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUBCD_SYNFM|NADH-QUINONE oxidoreductase subunit B/C/D|Syntrophobacter fumaroxidans (strain

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 655 LVRVEEMRQS 664


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   LCRVEEMRQS 10
           LCR++EMR+S
Sbjct: 282 LCRMQEMRES 291


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD1_HERA2|NADH-QUINONE oxidoreductase subunit D 1|Herpetosiphon aurantiacus (strain ATCC

Query: 2   CRVEEMRQS 10
           CRV+EMR+S
Sbjct: 288 CRVQEMRES 296


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD2_SINMW|NADH-QUINONE oxidoreductase subunit D 2|Sinorhizobium medicae (strain WSM419)

Query: 1   LCRVEEMRQS 10
           LCRV+EMR+S
Sbjct: 271 LCRVDEMRES 280


>sp|NUOD2_RHIME|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium meliloti (strain 1021)

Query: 1   LCRVEEMRQS 10
           LCRV+EMR+S
Sbjct: 271 LCRVDEMRES 280


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   LCRVEEMRQS 10
           LCRV EMR+S
Sbjct: 301 LCRVAEMRES 310


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   LCRVEEMRQS 10
           LCRV EMR+S
Sbjct: 301 LCRVAEMRES 310


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   LCRVEEMRQS 10
           LCR++EMR+S
Sbjct: 277 LCRMQEMRES 286


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   LCRVEEMRQS 10
           LCR++EMR+S
Sbjct: 264 LCRMQEMRES 273


>sp|NUOD1_CHLAA|NADH-QUINONE oxidoreductase subunit D 1|Chloroflexus aurantiacus (strain ATCC

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 259 LVRIEEMRQS 268


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   LCRVEEMRQS 10
           LCRV EMR+S
Sbjct: 301 LCRVAEMRES 310


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   LCRVEEMRQS 10
           LCRV EMR+S
Sbjct: 301 LCRVAEMRES 310


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292


>sp|NUOD2_ROSCS|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus castenholzii (strain DSM

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 259 LIRIEEMRQS 268


>sp|NUOD1_ROSS1|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus sp. (strain RS-1)

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 259 LIRIEEMRQS 268


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   LCRVEEMRQS 10
           L RVEEMRQS
Sbjct: 283 LVRVEEMRQS 292


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292


>sp|NUOD2_RHIE6|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain CIAT 652)

Query: 2   CRVEEMRQS 10
           CRV+EMR+S
Sbjct: 272 CRVDEMRES 280


>sp|NUOD2_RHIEC|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain ATCC 51251

Query: 2   CRVEEMRQS 10
           CRV+EMR+S
Sbjct: 272 CRVDEMRES 280


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   LCRVEEMRQS 10
           L R+EEMRQS
Sbjct: 283 LVRIEEMRQS 292




68|Sequence|336|345|EMRQSLRIIA

>sp|NUOD1_STRGG|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces griseus subsp. griseus

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 297 EMRQSLRII 305


>sp|NUOD_AKKM8|NADH-QUINONE oxidoreductase subunit D|Akkermansia muciniphila (strain ATCC

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 287 EMRQSLRII 295


>sp|NUOCD_PSYCK|NADH-QUINONE oxidoreductase subunit C/D|Psychrobacter cryohalolentis (strain

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 464 EMRQSLRII 472


>sp|NUOCD_RHOP5|NADH-QUINONE oxidoreductase subunit C/D|Rhodopseudomonas palustris (strain

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 454 EMRQSLRII 462


>sp|NUOCD_PSYA2|NADH-QUINONE oxidoreductase subunit C/D|Psychrobacter arcticus (strain DSM 17307

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 464 EMRQSLRII 472


>sp|NUOCD_PSEP7|NADH-QUINONE oxidoreductase subunit C/D|Pseudomonas paraeruginosa (strain DSM

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 466 EMRQSLRII 474


>sp|NUOCD_PSEAE|NADH-QUINONE oxidoreductase subunit C/D|Pseudomonas aeruginosa (strain ATCC

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 466 EMRQSLRII 474


>sp|NUOCD_PSEAB|NADH-QUINONE oxidoreductase subunit C/D|Pseudomonas aeruginosa (strain

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 466 EMRQSLRII 474


>sp|NUOCD_NITOC|NADH-QUINONE oxidoreductase subunit C/D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 466 EMRQSLRII 474


>sp|NUOCD_CHRI1|NADH-QUINONE oxidoreductase subunit C/D|Chromohalobacter israelensis (strain

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 465 EMRQSLRII 473


>sp|NUBCD_SYNFM|NADH-QUINONE oxidoreductase subunit B/C/D|Syntrophobacter fumaroxidans (strain

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 660 EMRQSLRII 668


>sp|NUOD2_STRCO|NADH-QUINONE oxidoreductase subunit D 2|Streptomyces coelicolor (strain ATCC

Query: 1   EMRQSLRII 9
           EMRQSLRI+
Sbjct: 297 EMRQSLRIV 305


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1   EMRQSLRII 9
           EMRQSLRI+
Sbjct: 300 EMRQSLRIV 308


>sp|NUOCD_AZOVD|NADH-QUINONE oxidoreductase subunit C/D|Azotobacter vinelandii (strain DJ /

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 466 EMRQSLRII 474


>sp|NUOCD_METCA|NADH-QUINONE oxidoreductase subunit C/D|Methylococcus capsulatus (strain ATCC

Query: 1   EMRQSLRII 9
           EMRQSLRII
Sbjct: 460 EMRQSLRII 468




69|Sequence|341|350|LRIIAQCLNK

>sp|NUOCD_NITOC|NADH-QUINONE oxidoreductase subunit C/D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   LRIIAQCLN 9
           LRII QCLN
Sbjct: 471 LRIIEQCLN 479




70|Sequence|346|355|QCLNKMPPGE

>sp|NUOCD_ACICJ|NADH-QUINONE oxidoreductase subunit C/D|Acidiphilium cryptum (strain JF-5)

Query: 1   QCLNKMPPG 9
           QCL+ MPPG
Sbjct: 475 QCLDNMPPG 483


>sp|NUOCD_SHEWM|NADH-QUINONE oxidoreductase subunit C/D|Shewanella woodyi (strain ATCC 51908

Query: 1   QCLNKMPPGE 10
           QC+N MP GE
Sbjct: 482 QCINNMPEGE 491


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   QCLNKMPPGE 10
           QC+ KMP GE
Sbjct: 279 QCIQKMPAGE 288


>sp|NUOD_RUBXD|NADH-QUINONE oxidoreductase subunit D|Rubrobacter xylanophilus (strain DSM 9941

Query: 1   QCLNKMPPGE 10
           QCL KMP GE
Sbjct: 304 QCLEKMPEGE 313


>sp|SYE_BORGP|GLUTAMATE--TRNA ligase|Borrelia garinii subsp. bavariensis (strain

Query: 1   QCLNKMPPG 9
           Q +NKMPPG
Sbjct: 120 QNINKMPPG 128


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   QCLNKMPPGE 10
           QC+ KMP GE
Sbjct: 279 QCIQKMPVGE 288


>sp|NUOCD_CITK8|NADH-QUINONE oxidoreductase subunit C/D|Citrobacter koseri (strain ATCC BAA-895

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ENT38|NADH-QUINONE oxidoreductase subunit C/D|Enterobacter sp. (strain 638)

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 478 QCLNNMPEG 486


>sp|NUOCD_SODGM|NADH-QUINONE oxidoreductase subunit C/D|Sodalis glossinidius (strain morsitans)

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 482 QCLNNMPAG 490


>sp|NUOCD_SHIF8|NADH-QUINONE oxidoreductase subunit C/D|Shigella flexneri serotype 5b (strain

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 479 QCLNNMPEG 487


>sp|NUOCD_SHIB3|NADH-QUINONE oxidoreductase subunit C/D|Shigella boydii serotype 18 (strain

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECOLI|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli (strain K12)

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 479 QCLNNMPEG 487


>sp|NUOCD_ECOL5|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O6:K15:H31 (strain 536

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 479 QCLNNMPEG 487


>sp|NUOCD_SHISS|NADH-QUINONE oxidoreductase subunit C/D|Shigella sonnei (strain Ss046)

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_SHIFL|NADH-QUINONE oxidoreductase subunit C/D|Shigella flexneri

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_SHIDS|NADH-QUINONE oxidoreductase subunit C/D|Shigella dysenteriae serotype 1 (strain

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_SHIBS|NADH-QUINONE oxidoreductase subunit C/D|Shigella boydii serotype 4 (strain

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ESCF3|NADH-QUINONE oxidoreductase subunit C/D|Escherichia fergusonii (strain ATCC

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECOUT|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli (strain UTI89 /

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECOSM|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli (strain SMS-3-5 /

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECOSE|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli (strain SE11)

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECOLU|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O17:K52:H18 (strain

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECOLC|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli (strain ATCC 8739

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECOL6|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O6:H1 (strain CFT073

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECOK1|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O1:K1 / APEC

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECOHS|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O9:H4 (strain HS)

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECODH|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli (strain K12 /

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECO8A|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O8 (strain IAI1)

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECO81|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O81 (strain ED1a)

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECO7I|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O7:K1 (strain IAI39

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECO5E|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O157:H7 (strain EC4115

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECO57|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O157:H7

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECO55|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli (strain 55989 /

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECO45|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O45:K1 (strain S88

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECO27|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O127:H6 (strain

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|NUOCD_ECO24|NADH-QUINONE oxidoreductase subunit C/D|Escherichia coli O139:H28 (strain

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 483 QCLNNMPEG 491


>sp|SYE_BORAP|GLUTAMATE--TRNA ligase|Borreliella afzelii (strain PKo) (Borrelia

Query: 1   QCLNKMPPG 9
           Q +NKMPPG
Sbjct: 120 QNINKMPPG 128


>sp|NUOCD_ERWT9|NADH-QUINONE oxidoreductase subunit C/D|Erwinia tasmaniensis (strain DSM 17950

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 482 QCLNNMPAG 490


>sp|NUOCD_SERP5|NADH-QUINONE oxidoreductase subunit C/D|Serratia proteamaculans (strain 568)

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 481 QCLNNMPEG 489


>sp|SYE_BORBU|GLUTAMATE--TRNA ligase|Borreliella burgdorferi (strain ATCC 35210

Query: 1   QCLNKMPPG 9
           Q +NKMPPG
Sbjct: 120 QNINKMPPG 128


>sp|NUOD_SACEN|NADH-QUINONE oxidoreductase subunit D|Saccharopolyspora erythraea (strain ATCC

Query: 1   QCLNKMPPG 9
           QCL+KM PG
Sbjct: 316 QCLDKMEPG 324


>sp|SYE_TREDE|GLUTAMATE--TRNA ligase|Treponema denticola (strain ATCC 35405

Query: 1   QCLNKMPPG 9
           Q +NKMPPG
Sbjct: 120 QTMNKMPPG 128


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   QCLNKMPPGE 10
           QC+ KMP G+
Sbjct: 273 QCIEKMPEGQ 282


>sp|NUOCD_NITOC|NADH-QUINONE oxidoreductase subunit C/D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   QCLNKMPPG 9
           QCLN MP G
Sbjct: 476 QCLNHMPAG 484




71|Sequence|351|360|MPPGEIKVDD

>sp|DSBD_RALN1|THIOL:DISULFIDE interchange protein DsbD|Ralstonia nicotianae (strain ATCC

Query: 1  MPPGEIKVDD 10
          +PPG++K DD
Sbjct: 87 LPPGKVKFDD 96


>sp|DIVJ_CAUVC|HISTIDINE protein kinase DivJ|Caulobacter vibrioides (strain ATCC 19089

Query: 1   MPPGEIKVD 9
           +PPGE++VD
Sbjct: 433 LPPGELEVD 441




72|Sequence|356|365|IKVDDAKVSP

>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   IKVDDAKVSP 10
           +KVDD KVSP
Sbjct: 310 VKVDDYKVSP 319


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   IKVDDAKVSP 10
           +KVDD KVSP
Sbjct: 310 VKVDDYKVSP 319




73|Sequence|361|370|AKVSPPKRAE

>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 2   KVSPPKRAE 10
           KVSPPKR E
Sbjct: 301 KVSPPKRGE 309


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 2   KVSPPKRAE 10
           K++PPKRAE
Sbjct: 305 KITPPKRAE 313


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   AKVSPPKRAE 10
            K++PPKRAE
Sbjct: 311 GKLTPPKRAE 320


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 2   KVSPPKRAE 10
           KV PPKRAE
Sbjct: 302 KVVPPKRAE 310




74|Sequence|366|375|PKRAEMKTSM

>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   PKRAEMKTSM 10
           PKRAEMKTSM
Sbjct: 316 PKRAEMKTSM 325


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   PKRAEMKTSM 10
           PKR+EMKTSM
Sbjct: 295 PKRSEMKTSM 304


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   PKRAEMKTSM 10
           P RAEMKTSM
Sbjct: 305 PPRAEMKTSM 314


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   PKRAEMKTSM 10
           P RAEMKTSM
Sbjct: 291 PSRAEMKTSM 300


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   PKRAEMKTSM 10
           PKR +MKTSM
Sbjct: 308 PKRGDMKTSM 317


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   PKRAEMKTSM 10
           PKR +MKTSM
Sbjct: 306 PKRGDMKTSM 315


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   PKRAEMKTSM 10
           PKR+EMK+SM
Sbjct: 299 PKRSEMKSSM 308


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   PKRAEMKTSM 10
           PKRAEMK SM
Sbjct: 306 PKRAEMKQSM 315


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   PKRAEMKTSM 10
           PKRAEMK SM
Sbjct: 309 PKRAEMKRSM 318


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   PKRAEMKTSM 10
           P RA+MKTSM
Sbjct: 307 PSRADMKTSM 316


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   PKRAEMKTSM 10
           PKR+EMK+SM
Sbjct: 299 PKRSEMKSSM 308


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   PKRAEMKTSM 10
           PKR+EMK SM
Sbjct: 299 PKRSEMKNSM 308


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   PKRAEMKTSM 10
           P+RAEMK SM
Sbjct: 305 PRRAEMKRSM 314


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   PKRAEMKTSM 10
           P R EMKTSM
Sbjct: 305 PPRGEMKTSM 314


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   PKRAEMKTSM 10
           P R EMKTSM
Sbjct: 307 PPRGEMKTSM 316


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   PKRAEMKTSM 10
           P+RAEMK SM
Sbjct: 319 PRRAEMKRSM 328


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   PKRAEMKTSM 10
           PKR EMK+SM
Sbjct: 299 PKRCEMKSSM 308


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   PKRAEMKTSM 10
           P+RAEMK SM
Sbjct: 305 PRRAEMKRSM 314


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   PKRAEMKTSM 10
           P+RAEMK SM
Sbjct: 301 PRRAEMKRSM 310


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKCSM 308


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   PKRAEMKTSM 10
           PKR+EMK SM
Sbjct: 296 PKRSEMKESM 305


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 299 PKRGEMKRSM 308


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   PKRAEMKTSM 10
           PKR+EMK SM
Sbjct: 296 PKRSEMKKSM 305


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   PKRAEMKTSM 10
           PKR+EMK SM
Sbjct: 296 PKRSEMKESM 305


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 305 PKRGEMKRSM 314


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   PKRAEMKTSM 10
           P R EMKTSM
Sbjct: 320 PSRVEMKTSM 329


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   PKRAEMKTSM 10
           PKR+EMK SM
Sbjct: 296 PKRSEMKKSM 305


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 305 PKRGEMKRSM 314


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   PKRAEMKTSM 10
           PKR EMKT M
Sbjct: 321 PKRTEMKTGM 330


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   PKRAEMKTSM 10
           PKR EMKT M
Sbjct: 321 PKRTEMKTGM 330


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 308 PKRGEMKQSM 317


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   PKRAEMKTSM 10
           PKR EMKT M
Sbjct: 321 PKRTEMKTGM 330


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   PKRAEMKTSM 10
           PKR EMKT M
Sbjct: 321 PKRTEMKTGM 330


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   PKRAEMKTSM 10
           PKR EMKT M
Sbjct: 321 PKRTEMKTGM 330


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   PKRAEMKTSM 10
           PKR EMKT M
Sbjct: 321 PKRTEMKTGM 330


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   PKRAEMKTSM 10
           PKR EMK SM
Sbjct: 309 PKRGEMKRSM 318


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   PKRAEMKTSM 10
           P R EMKTSM
Sbjct: 320 PSREEMKTSM 329


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   PKRAEMKTSM 10
           PKR +MKT+M
Sbjct: 320 PKRVDMKTNM 329


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   PKRAEMKTSM 10
           PKR +MKT+M
Sbjct: 320 PKRVDMKTNM 329




75|Sequence|371|380|MKTSMESLIH

>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   MKTSMESLIH 10
           MKTSMESLIH
Sbjct: 311 MKTSMESLIH 320


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   MKTSMESLIH 10
           MKTSMESLIH
Sbjct: 313 MKTSMESLIH 322


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   MKTSMESLIH 10
           MKTSMESLIH
Sbjct: 315 MKTSMESLIH 324


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   MKTSMESLIH 10
           MKTSMESLIH
Sbjct: 300 MKTSMESLIH 309


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   MKTSMESLIH 10
           MKTSME+LIH
Sbjct: 321 MKTSMEALIH 330


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   MKTSMESLIH 10
           MKTSME+LIH
Sbjct: 320 MKTSMEALIH 329


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   MKTSMESLIH 10
           MKTSME+LIH
Sbjct: 312 MKTSMEALIH 321


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   MKTSMESLIH 10
           MKTSME+LIH
Sbjct: 310 MKTSMEALIH 319


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   MKTSMESLIH 10
           MKTSME+LIH
Sbjct: 312 MKTSMEALIH 321


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   MKTSMESLIH 10
           MKTSME+LIH
Sbjct: 310 MKTSMEALIH 319


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   MKTSMESLIH 10
           MKTSME+LIH
Sbjct: 325 MKTSMEALIH 334


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   MKTSMESLIH 10
           MKTSME+LIH
Sbjct: 296 MKTSMEALIH 305


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   MKTSMESLIH 10
           MK SMESLIH
Sbjct: 324 MKRSMESLIH 333


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   MKTSMESLIH 10
           MK SMESLIH
Sbjct: 304 MKRSMESLIH 313


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   MKTSMESLIH 10
           MK SMESLIH
Sbjct: 309 MKRSMESLIH 318


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   MKTSMESLIH 10
           MK SMESLIH
Sbjct: 306 MKRSMESLIH 315


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   MKTSMESLIH 10
           MK SMESLIH
Sbjct: 304 MKRSMESLIH 313


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   MKTSMESLIH 10
           MKTSME LIH
Sbjct: 325 MKTSMEELIH 334


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   MKTSMESLIH 10
           MK+SME+LIH
Sbjct: 304 MKSSMEALIH 313


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   MKTSMESLIH 10
           MK+SME+LIH
Sbjct: 300 MKSSMEALIH 309


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   MKTSMESLIH 10
           MK+SME+LIH
Sbjct: 304 MKSSMEALIH 313


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   MKTSMESLIH 10
           MK+SME+LIH
Sbjct: 304 MKSSMEALIH 313


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   MKTSMESLIH 10
           MK SMESLIH
Sbjct: 313 MKQSMESLIH 322


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEELIH 334


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 300 MKNSMEALIH 309


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKNSMEALIH 313


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 326 MKTNMEDLIH 335


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKCSMEALIH 313


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEELIH 334


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEDLIH 334


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEELIH 334


>sp|NUOD_ACIC1|NADH-QUINONE oxidoreductase subunit D|Acidothermus cellulolyticus (strain ATCC

Query: 1   MKTSMESLIH 10
           M TSME+LIH
Sbjct: 348 MATSMEALIH 357


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 310 MKRSMEALIH 319


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 310 MKRSMEALIH 319


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 310 MKRSMEALIH 319


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 319 MKRSMEALIH 328


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 310 MKRSMEALIH 319


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 308 MKRSMEALIH 317


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 324 MKRSMEALIH 333


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 306 MKRSMEALIH 315


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 324 MKRSMEALIH 333


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 306 MKRSMEALIH 315


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 306 MKRSMEALIH 315


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 306 MKRSMEALIH 315


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 310 MKRSMEALIH 319


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 313 MKRSMEALIH 322


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 310 MKRSMEALIH 319


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 304 MKRSMEALIH 313


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 300 MKRSMEALIH 309


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 301 MKESMEALIH 310


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 301 MKESMEALIH 310


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEELIH 334


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   MKTSMESLIH 10
           MKT+ME LIH
Sbjct: 325 MKTNMEELIH 334


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 298 MKKSMEALIH 307


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 298 MKRSMEALIH 307


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 301 MKKSMEALIH 310


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 311 MKQSMEALIH 320


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 301 MKKSMEALIH 310


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 314 MKRSMEALIH 323


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 314 MKRSMEALIH 323


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   MKTSMESLIH 10
           MKT ME LIH
Sbjct: 326 MKTGMEDLIH 335


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   MKTSMESLIH 10
           MKT ME LIH
Sbjct: 326 MKTGMEDLIH 335


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   MKTSMESLIH 10
           MKT ME LIH
Sbjct: 326 MKTGMEDLIH 335


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   MKTSMESLIH 10
           MK SME+LIH
Sbjct: 311 MKQSMEALIH 320


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   MKTSMESLIH 10
           MKT ME LIH
Sbjct: 326 MKTGMEDLIH 335


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   MKTSMESLIH 10
           MKT ME LIH
Sbjct: 326 MKTGMEDLIH 335


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   MKTSMESLIH 10
           MKT ME LIH
Sbjct: 326 MKTGMEDLIH 335




76|Sequence|376|385|ESLIHHFKLY

>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 329 ESLIHHFKLY 338


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 309 ESLIHHFKLY 318


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 314 ESLIHHFKLY 323


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 325 ESLIHHFKLY 334


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 325 ESLIHHFKLY 334


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 311 ESLIHHFKLY 320


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 316 ESLIHHFKLY 325


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 318 ESLIHHFKLY 327


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 318 ESLIHHFKLY 327


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 309 ESLIHHFKLY 318


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   ESLIHHFKLY 10
           ESLIHHFKLY
Sbjct: 320 ESLIHHFKLY 329


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 326 EALIHHFKLY 335


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 324 EALIHHFKLY 333


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 329 EALIHHFKLY 338


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 318 EALIHHFKLY 327


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 315 EALIHHFKLY 324


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 315 EALIHHFKLY 324


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 311 EALIHHFKLY 320


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 311 EALIHHFKLY 320


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 311 EALIHHFKLY 320


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 311 EALIHHFKLY 320


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 305 EALIHHFKLY 314


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 325 EALIHHFKLY 334


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   ESLIHHFKLY 10
           ESLIHHFKL+
Sbjct: 330 ESLIHHFKLF 339


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 315 EALIHHFKLY 324


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 319 EALIHHFKLY 328


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 317 EALIHHFKLY 326


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 315 EALIHHFKLY 324


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 315 EALIHHFKLY 324


>sp|NUOD2_CHLAA|NADH-QUINONE oxidoreductase subunit D 2|Chloroflexus aurantiacus (strain ATCC

Query: 1   ESLIHHFKLY 10
           ESLIHHFKL+
Sbjct: 324 ESLIHHFKLW 333


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 315 EALIHHFKLY 324


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 317 EALIHHFKLY 326


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 309 EALIHHFKLY 318


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 306 EALIHHFKLY 315


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 315 EALIHHFKLY 324


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   ESLIHHFKLY 10
           ESLIHHFKL+
Sbjct: 305 ESLIHHFKLF 314


>sp|NUOD1_HERA2|NADH-QUINONE oxidoreductase subunit D 1|Herpetosiphon aurantiacus (strain ATCC

Query: 1   ESLIHHFKLY 10
           ESLIHHFKL+
Sbjct: 335 ESLIHHFKLW 344


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 316 EALIHHFKLY 325


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 313 EALIHHFKLY 322


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 306 EALIHHFKLY 315


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 316 EALIHHFKLY 325


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 315 EALIHHFKLY 324


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 306 EALIHHFKLY 315


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   ESLIHHFKLY 10
           ESLIHHFKL+
Sbjct: 330 ESLIHHFKLF 339


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 306 EALIHHFKLY 315


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 319 EALIHHFKLY 328


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 303 EALIHHFKLY 312


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 349 EALIHHFKLF 358


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 303 EALIHHFKLY 312


>sp|NUOD_SACEN|NADH-QUINONE oxidoreductase subunit D|Saccharopolyspora erythraea (strain ATCC

Query: 1   ESLIHHFKL 9
           ESLIHHFKL
Sbjct: 362 ESLIHHFKL 370


>sp|NUOD_RHOJR|NADH-QUINONE oxidoreductase subunit D|Rhodococcus jostii (strain RHA1)

Query: 1   ESLIHHFKL 9
           ESLIHHFKL
Sbjct: 351 ESLIHHFKL 359


>sp|NUOD1_SALTO|NADH-QUINONE oxidoreductase subunit D 1|Salinispora tropica (strain ATCC BAA-916

Query: 1   ESLIHHFKL 9
           ESLIHHFKL
Sbjct: 354 ESLIHHFKL 362


>sp|NUOD1_SALAI|NADH-QUINONE oxidoreductase subunit D 1|Salinispora arenicola (strain CNS-205)

Query: 1   ESLIHHFKL 9
           ESLIHHFKL
Sbjct: 354 ESLIHHFKL 362


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 305 EALIHHFKLY 314


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 304 EAMIHHFKLY 313


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 304 EAMIHHFKLY 313


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   ESLIHHFKLY 10
           ESLIHHFKL+
Sbjct: 330 ESLIHHFKLF 339


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   ESLIHHFKLY 10
           ESLIHHFKL+
Sbjct: 330 ESLIHHFKLF 339


>sp|NUOD2_ROSS1|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus sp. (strain RS-1)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLW 339


>sp|NUOD1_ROSCS|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus castenholzii (strain DSM

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLW 339


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 302 EAMIHHFKLY 311


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   ESLIHHFKLY 10
           E+LIHHFKLY
Sbjct: 301 EALIHHFKLY 310


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 329 EALIHHFKLF 338


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 302 EAMIHHFKLY 311


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 304 EAMIHHFKLY 313


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 311 EALIHHFKLF 320


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 304 EAMIHHFKLY 313


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 304 EAMIHHFKLY 313


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 304 EAMIHHFKLY 313


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 304 EAMIHHFKLY 313


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 303 EAMIHHFKLY 312


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 304 EAMIHHFKLY 313


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   ESLIHHFKLY 10
           E++IHHFKLY
Sbjct: 304 EAMIHHFKLY 313


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 305 EALIHHFKLF 314


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 308 EALIHHFKLF 317


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 348 EALIHHFKLF 357


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EDLIHHFKLF 340


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EDLIHHFKLF 340


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EDLIHHFKLF 340


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_THEFY|NADH-QUINONE oxidoreductase subunit D|Thermobifida fusca (strain YX)

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 347 EALIHHFKL 355


>sp|NUOD_PARS2|NADH-QUINONE oxidoreductase subunit D|Parafrankia sp. (strain EAN1pec)

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 370 EALIHHFKL 378


>sp|NUOD_NOCSJ|NADH-QUINONE oxidoreductase subunit D|Nocardioides sp. (strain ATCC BAA-499

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 359 EALIHHFKL 367


>sp|NUOD_MYCUA|NADH-QUINONE oxidoreductase subunit D|Mycobacterium ulcerans (strain Agy99)

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 345 EALIHHFKL 353


>sp|NUOD_MYCTU|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain ATCC

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 353 EALIHHFKL 361


>sp|NUOD_MYCTO|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain CDC

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 353 EALIHHFKL 361


>sp|NUOD_MYCTA|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain ATCC

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 353 EALIHHFKL 361


>sp|NUOD_MYCPA|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium paratuberculosis (strain

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 354 EALIHHFKL 362


>sp|NUOD_MYCMM|NADH-QUINONE oxidoreductase subunit D|Mycobacterium marinum (strain ATCC BAA-535

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 345 EALIHHFKL 353


>sp|NUOD_MYCBP|NADH-QUINONE oxidoreductase subunit D|Mycobacterium bovis (strain BCG /

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 353 EALIHHFKL 361


>sp|NUOD_MYCBO|NADH-QUINONE oxidoreductase subunit D|Mycobacterium bovis (strain ATCC BAA-935

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 353 EALIHHFKL 361


>sp|NUOD_MYCA1|NADH-QUINONE oxidoreductase subunit D|Mycobacterium avium (strain 104)

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 354 EALIHHFKL 362


>sp|NUOD_FRACC|NADH-QUINONE oxidoreductase subunit D|Frankia casuarinae (strain DSM 45818

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 395 EALIHHFKL 403


>sp|NUOD_FRAAA|NADH-QUINONE oxidoreductase subunit D|Frankia alni (strain DSM 45986

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 383 EALIHHFKL 391


>sp|NUOD_ACIC1|NADH-QUINONE oxidoreductase subunit D|Acidothermus cellulolyticus (strain ATCC

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 353 EALIHHFKL 361


>sp|NUOD2_STRCO|NADH-QUINONE oxidoreductase subunit D 2|Streptomyces coelicolor (strain ATCC

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 353 EALIHHFKL 361


>sp|NUOD1_STRGG|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces griseus subsp. griseus

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 353 EALIHHFKL 361


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 356 EALIHHFKL 364


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EDLIHHFKLF 340


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EDLIHHFKLF 340


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EDLIHHFKLF 340


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 330 EALIHHFKLF 339


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EVLIHHFKLF 339


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EELIHHFKLF 340


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EELIHHFKLF 340


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EELIHHFKLF 340


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EDLIHHFKLF 340


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 331 EELIHHFKLF 340


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EDLIHHFKLF 339


>sp|NUOD_NOCFA|NADH-QUINONE oxidoreductase subunit D|Nocardia farcinica (strain IFM 10152)

Query: 1   ESLIHHFKL 9
           E LIHHFKL
Sbjct: 366 EGLIHHFKL 374


>sp|NUOD_MYCVP|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium vanbaalenii (strain DSM

Query: 1   ESLIHHFKL 9
           E LIHHFKL
Sbjct: 355 EGLIHHFKL 363


>sp|NUOD_MYCSS|NADH-QUINONE oxidoreductase subunit D|Mycobacterium sp. (strain MCS)

Query: 1   ESLIHHFKL 9
           E LIHHFKL
Sbjct: 359 EGLIHHFKL 367


>sp|NUOD_MYCSK|NADH-QUINONE oxidoreductase subunit D|Mycobacterium sp. (strain KMS)

Query: 1   ESLIHHFKL 9
           E LIHHFKL
Sbjct: 359 EGLIHHFKL 367


>sp|NUOD_MYCSJ|NADH-QUINONE oxidoreductase subunit D|Mycobacterium sp. (strain JLS)

Query: 1   ESLIHHFKL 9
           E LIHHFKL
Sbjct: 359 EGLIHHFKL 367


>sp|NUOD_MYCS2|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium smegmatis (strain ATCC

Query: 1   ESLIHHFKL 9
           E LIHHFKL
Sbjct: 355 EGLIHHFKL 363


>sp|NUOD_MYCGI|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium gilvum (strain PYR-GCK)

Query: 1   ESLIHHFKL 9
           E LIHHFKL
Sbjct: 364 EGLIHHFKL 372


>sp|NUOD_MYCA9|NADH-QUINONE oxidoreductase subunit D|Mycobacteroides abscessus (strain ATCC

Query: 1   ESLIHHFKL 9
           E LIHHFKL
Sbjct: 345 EGLIHHFKL 353


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   ESLIHHFKL 9
           ES+IHHFKL
Sbjct: 310 ESMIHHFKL 318


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   ESLIHHFKLY 10
           E LIHHFKL+
Sbjct: 330 EELIHHFKLF 339


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   ESLIHHFKLY 10
           E+LI HFKLY
Sbjct: 315 EALIQHFKLY 324


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   ESLIHHFKLY 10
           E+LIHHFKL+
Sbjct: 304 EALIHHFKLF 313


>sp|NUOD_CUTAK|NADH-QUINONE oxidoreductase subunit D|Cutibacterium acnes (strain DSM 16379

Query: 1   ESLIHHFKL 9
           E+LIHHFK+
Sbjct: 346 EALIHHFKI 354


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   ESLIHHFKLY 10
           E +IHHFKL+
Sbjct: 330 EEMIHHFKLF 339


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   ESLIHHFKLY 10
           E+LI+HFKLY
Sbjct: 309 EALINHFKLY 318


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   ESLIHHFKLY 10
           E+LI+HFKLY
Sbjct: 309 EALINHFKLY 318


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   ESLIHHFKLY 10
           E +IHHFKL+
Sbjct: 330 EEMIHHFKLF 339


>sp|NUOD1_SYMTH|NADH-QUINONE oxidoreductase subunit D 1|Symbiobacterium thermophilum (strain DSM

Query: 1   ESLIHHFKL 9
           E+LIHHFKL
Sbjct: 317 EALIHHFKL 325


>sp|NUOD_TRIL1|NADH-QUINONE oxidoreductase subunit D|Trichlorobacter lovleyi (strain ATCC

Query: 1   ESLIHHFKL 9
           E LIHHFK+
Sbjct: 303 EGLIHHFKI 311


>sp|NUOD_GEOSL|NADH-QUINONE oxidoreductase subunit D|Geobacter sulfurreducens (strain ATCC

Query: 1   ESLIHHFKL 9
           E LIHHFK+
Sbjct: 303 EGLIHHFKI 311


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   ESLIHHFKLY 10
           E+LI HFKLY
Sbjct: 309 EALIQHFKLY 318


>sp|NUOD_GEOUR|NADH-QUINONE oxidoreductase subunit D|Geotalea uraniireducens (strain Rf4)

Query: 1   ESLIHHFKL 9
           E LIHHFK+
Sbjct: 303 EGLIHHFKI 311


>sp|NUOD_GEOMG|NADH-QUINONE oxidoreductase subunit D|Geobacter metallireducens (strain ATCC

Query: 1   ESLIHHFKL 9
           E LIHHFK+
Sbjct: 303 EGLIHHFKI 311


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   ESLIHHFKLY 10
           E++I HFKLY
Sbjct: 309 EAMIEHFKLY 318


>sp|NUOD_CITBB|NADH-QUINONE oxidoreductase subunit D|Citrifermentans bemidjiense (strain ATCC

Query: 1   ESLIHHFKL 9
           E LIHHFK+
Sbjct: 302 EGLIHHFKI 310


>sp|NUOD2_KORVE|NADH-QUINONE oxidoreductase subunit D 2|Koribacter versatilis (strain Ellin345)

Query: 1   ESLIHHFKL 9
           ESLI+HFK+
Sbjct: 314 ESLIYHFKI 322


>sp|NUOD_DEIGD|NADH-QUINONE oxidoreductase subunit D|Deinococcus geothermalis (strain DSM 11300

Query: 1   ESLIHHFKL 9
           E++IHHFKL
Sbjct: 316 EAVIHHFKL 324


>sp|NUOD_DEIRA|NADH-QUINONE oxidoreductase subunit D|Deinococcus radiodurans (strain ATCC 13939

Query: 1   ESLIHHFKL 9
           E++IHHFKL
Sbjct: 314 EAVIHHFKL 322




77|Sequence|381|390|HFKLYTEGYQ

>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY+
Sbjct: 314 HFKLYTEGYR 323


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY+
Sbjct: 329 HFKLYTEGYR 338


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 318 HFKLYTEGYH 327


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 314 HFKLYTEGYH 323


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 324 HFKLYTEGYH 333


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 316 HFKLYTEGYH 325


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 330 HFKLYTEGFK 339


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 330 HFKLYTEGFK 339


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 316 HFKLYTEGFK 325


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   HFKLYTEGY 9
           HFKLYTEGY
Sbjct: 309 HFKLYTEGY 317


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   HFKLYTEGY 9
           HFKLYTEGY
Sbjct: 309 HFKLYTEGY 317


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   HFKLYTEGY 9
           HFKLYTEGY
Sbjct: 307 HFKLYTEGY 315


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 334 HFKLYTEGFR 343


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 314 HFKLYTEGFR 323


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   HFKLYTEGY 9
           HFKLYTEGY
Sbjct: 307 HFKLYTEGY 315


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 320 HFKLYTEGFR 329


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 314 HFKLYTEGFR 323


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   HFKLYTEGY 9
           HFKLYTEGY
Sbjct: 309 HFKLYTEGY 317


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   HFKLYTEGYQ 10
           HFKL++EGYQ
Sbjct: 354 HFKLFSEGYQ 363


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 334 HFKLYTEGFR 343


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 319 HFKLYTEGFR 328


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 314 HFKLYTEGFH 323


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   HFKLYTEGY 9
           HFKLYTEGY
Sbjct: 309 HFKLYTEGY 317


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 331 HFKLYTEGFK 340


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   HFKLYTEGY 9
           HFKLYTEGY
Sbjct: 309 HFKLYTEGY 317


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   HFKLYTEGY 9
           HFKLYTEGY
Sbjct: 309 HFKLYTEGY 317


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   HFKLYTEGY 9
           HFKLYTEGY
Sbjct: 309 HFKLYTEGY 317


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 314 HFKLYTEGFR 323


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY 
Sbjct: 310 HFKLYTEGYH 319


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 321 HFKLYTEGFH 330


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 314 HFKLYTEGFH 323


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEGY+
Sbjct: 309 HFKLYTEGYE 318


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 314 HFKLYTEGFH 323


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   HFKLYTEGYQ 10
           HFKL+TEGY 
Sbjct: 334 HFKLFTEGYH 343


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 314 HFKLYTEGFH 323


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 320 HFKLYTEGFH 329


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 314 HFKLYTEGFH 323


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 314 HFKLYTEGFH 323


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 314 HFKLYTEGFH 323


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 324 HFKLYTEGFH 333


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 320 HFKLYTEGFH 329


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 314 HFKLYTEGFH 323


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 321 HFKLYTEGFH 330


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   HFKLYTEGY 9
           HFKLY+EGY
Sbjct: 311 HFKLYSEGY 319


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   HFKLYTEGY 9
           HFKLY+EGY
Sbjct: 311 HFKLYSEGY 319


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEGY+
Sbjct: 309 HFKLFTEGYR 318


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 320 HFKLYTEGFH 329


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   HFKLYTEGY 9
           HFKLY+EGY
Sbjct: 311 HFKLYSEGY 319


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   HFKLYTEGY 9
           HFKLY+EGY
Sbjct: 311 HFKLYSEGY 319


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 320 HFKLYTEGFH 329


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 310 HFKLYTEGFH 319


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 320 HFKLYTEGFH 329


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   HFKLYTEGYQ 10
           HFKLY+EGY 
Sbjct: 308 HFKLYSEGYH 317


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 325 HFKLYTEGFH 334


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 323 HFKLYTEGFH 332


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   HFKLYTEGYQ 10
           HFKLY+EGY 
Sbjct: 308 HFKLYSEGYH 317


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   HFKLYTEGYQ 10
           HFKLY+EGY 
Sbjct: 308 HFKLYSEGYH 317


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 322 HFKLYTEGFH 331


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 322 HFKLYTEGFH 331


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 320 HFKLYTEGFH 329


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 323 HFKLYTEGFH 332


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 320 HFKLYTEGFH 329


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 321 HFKLYTEGFH 330


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   HFKLYTEGYQ 10
           HFKLY+EGY 
Sbjct: 306 HFKLYSEGYH 315


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG++
Sbjct: 314 HFKLYTEGHR 323


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 330 HFKLYTEGFH 339


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   HFKLYTEGYQ 10
           HFKL++EGY+
Sbjct: 316 HFKLFSEGYK 325


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   HFKLYTEGY 9
           HFKLY+EGY
Sbjct: 314 HFKLYSEGY 322


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   HFKLYTEGY 9
           HFKLY+EGY
Sbjct: 314 HFKLYSEGY 322


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   HFKLYTEG 8
           HFKLYTEG
Sbjct: 323 HFKLYTEG 330


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD2_ROSS1|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus sp. (strain RS-1)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG++
Sbjct: 335 HFKLWTEGFK 344


>sp|NUOD2_CHLAA|NADH-QUINONE oxidoreductase subunit D 2|Chloroflexus aurantiacus (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG++
Sbjct: 329 HFKLWTEGFK 338


>sp|NUOD1_ROSCS|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus castenholzii (strain DSM

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG++
Sbjct: 335 HFKLWTEGFK 344


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG++
Sbjct: 335 HFKLFTEGFR 344


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   HFKLYTEG 8
           HFKLYTEG
Sbjct: 316 HFKLYTEG 323


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   HFKLYTEGYQ 10
           HFKLYTEG+ 
Sbjct: 314 HFKLYTEGHH 323


>sp|NUOD1_HERA2|NADH-QUINONE oxidoreductase subunit D 1|Herpetosiphon aurantiacus (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG++
Sbjct: 340 HFKLWTEGFR 349


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   HFKLYTEG 8
           HFKLYTEG
Sbjct: 316 HFKLYTEG 323


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   HFKLYTEG 8
           HFKLYTEG
Sbjct: 316 HFKLYTEG 323


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   HFKLYTEGYQ 10
           HFKL++EGY+
Sbjct: 313 HFKLFSEGYK 322


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   HFKLYTEGY 9
           HFKL+TEGY
Sbjct: 335 HFKLFTEGY 343


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG++
Sbjct: 335 HFKLFTEGFR 344


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG++
Sbjct: 310 HFKLFTEGFK 319


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG++
Sbjct: 335 HFKLFTEGFR 344


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   HFKLYTEGY 9
           HFKLYT GY
Sbjct: 309 HFKLYTAGY 317


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG++
Sbjct: 310 HFKLFTEGFK 319


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   HFKLYTEG 8
           HFKLYTEG
Sbjct: 320 HFKLYTEG 327


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 335 HFKLFSEGY 343


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 336 HFKLFTEGFH 345


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 336 HFKLFTEGFH 345


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 335 HFKLFSEGY 343


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 335 HFKLFSEGY 343


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 353 HFKLFSEGY 361


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 335 HFKLFSEGY 343


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 335 HFKLFSEGY 343


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 335 HFKLFSEGY 343


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 335 HFKLFSEGY 343


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 335 HFKLFSEGY 343


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   HFKLYTEGY 9
           HFKL++EGY
Sbjct: 335 HFKLFSEGY 343


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   HFKLYTEGY 9
           HFKL+TEG+
Sbjct: 335 HFKLFTEGF 343


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   HFKLYTEGY 9
           HFKL+TEG+
Sbjct: 335 HFKLFTEGF 343


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   HFKLYTEGY 9
           HFKL+TEG+
Sbjct: 335 HFKLFTEGF 343


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   HFKLYTEGY 9
           HFKL+TEG+
Sbjct: 335 HFKLFTEGF 343


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL+TEG+ 
Sbjct: 335 HFKLFTEGFH 344


>sp|NUOD_THEFY|NADH-QUINONE oxidoreductase subunit D|Thermobifida fusca (strain YX)

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 352 HFKLVTEGFR 361


>sp|NUOD_RHOJR|NADH-QUINONE oxidoreductase subunit D|Rhodococcus jostii (strain RHA1)

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 356 HFKLVTEGFR 365


>sp|NUOD_NOCSJ|NADH-QUINONE oxidoreductase subunit D|Nocardioides sp. (strain ATCC BAA-499

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 364 HFKLVTEGFR 373


>sp|NUOD_FRACC|NADH-QUINONE oxidoreductase subunit D|Frankia casuarinae (strain DSM 45818

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 400 HFKLVTEGFR 409


>sp|NUOD_FRAAA|NADH-QUINONE oxidoreductase subunit D|Frankia alni (strain DSM 45986

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 388 HFKLVTEGFR 397


>sp|NUOD2_STRCO|NADH-QUINONE oxidoreductase subunit D 2|Streptomyces coelicolor (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 358 HFKLVTEGFR 367


>sp|NUOD1_STRGG|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces griseus subsp. griseus

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 358 HFKLVTEGFR 367


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 361 HFKLVTEGFR 370


>sp|NUOD1_SALTO|NADH-QUINONE oxidoreductase subunit D 1|Salinispora tropica (strain ATCC BAA-916

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 359 HFKLVTEGFR 368


>sp|NUOD1_SALAI|NADH-QUINONE oxidoreductase subunit D 1|Salinispora arenicola (strain CNS-205)

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 359 HFKLVTEGFR 368


>sp|NUOD_PARS2|NADH-QUINONE oxidoreductase subunit D|Parafrankia sp. (strain EAN1pec)

Query: 1   HFKLYTEGYQ 10
           HFKL TEG++
Sbjct: 375 HFKLVTEGFR 384


>sp|NUOD_ACIC1|NADH-QUINONE oxidoreductase subunit D|Acidothermus cellulolyticus (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL TEG+ 
Sbjct: 358 HFKLVTEGFH 367


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   HFKLYTEGYQ 10
           HFKL++EG+ 
Sbjct: 336 HFKLFSEGFH 345


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   HFKLYTEGYQ 10
           HFKL++EG+ 
Sbjct: 336 HFKLFSEGFH 345


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   HFKLYTEGYQ 10
           HFKL++EG+ 
Sbjct: 336 HFKLFSEGFH 345


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   HFKLYTEGY 9
           HFKL++EG+
Sbjct: 335 HFKLFSEGF 343


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_SACEN|NADH-QUINONE oxidoreductase subunit D|Saccharopolyspora erythraea (strain ATCC

Query: 1   HFKLYTEGY 9
           HFKL TEG+
Sbjct: 367 HFKLVTEGF 375


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 336 HFKLFTEG 343


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 336 HFKLFTEG 343


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 336 HFKLFTEG 343


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 336 HFKLFTEG 343


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 336 HFKLFTEG 343


>sp|NUOD_CUTAK|NADH-QUINONE oxidoreductase subunit D|Cutibacterium acnes (strain DSM 16379

Query: 1   HFKLYTEGYQ 10
           HFK+ TEG++
Sbjct: 351 HFKIVTEGFR 360


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 336 HFKLFTEG 343


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   HFKLYTEG 8
           HFKL+TEG
Sbjct: 335 HFKLFTEG 342


>sp|NUOD1_SOLUE|NADH-QUINONE oxidoreductase subunit D 1|Solibacter usitatus (strain Ellin6076)

Query: 1   HFKLYTEGYQ 10
           HFK+ TEG++
Sbjct: 327 HFKIVTEGFR 336


>sp|NQO4_THET8|NADH-QUINONE oxidoreductase subunit 4|Thermus thermophilus (strain ATCC 27634

Query: 1   HFKLYTEGYQ 10
           HFK YTEG+ 
Sbjct: 327 HFKHYTEGFH 336




78|Sequence|386|395|TEGYQVPPGA

>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   TEGYQVPPGA 10
           TEGY VPPGA
Sbjct: 339 TEGYHVPPGA 348


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   TEGYQVPPG 9
           TEG+ VPPG
Sbjct: 341 TEGFHVPPG 349


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   TEGYQVPPG 9
           TEG+ VPPG
Sbjct: 340 TEGFHVPPG 348


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   TEGYQVPPG 9
           TEG+ VPPG
Sbjct: 341 TEGFHVPPG 349


>sp|NUOD_RHOJR|NADH-QUINONE oxidoreductase subunit D|Rhodococcus jostii (strain RHA1)

Query: 1   TEGYQVPPG 9
           TEG++VPPG
Sbjct: 361 TEGFRVPPG 369


>sp|NUOD_NOCSJ|NADH-QUINONE oxidoreductase subunit D|Nocardioides sp. (strain ATCC BAA-499

Query: 1   TEGYQVPPG 9
           TEG++VPPG
Sbjct: 369 TEGFRVPPG 377


>sp|NUOD1_SALTO|NADH-QUINONE oxidoreductase subunit D 1|Salinispora tropica (strain ATCC BAA-916

Query: 1   TEGYQVPPG 9
           TEG++VPPG
Sbjct: 364 TEGFRVPPG 372


>sp|NUOD1_SALAI|NADH-QUINONE oxidoreductase subunit D 1|Salinispora arenicola (strain CNS-205)

Query: 1   TEGYQVPPG 9
           TEG++VPPG
Sbjct: 364 TEGFRVPPG 372


>sp|GLNA2_STRCO|GAMMA-GLUTAMYLPOLYAMINE synthetase GlnA2|Streptomyces coelicolor (strain ATCC BAA-471

Query: 2   EGYQVPPGA 10
           EGY++PPGA
Sbjct: 369 EGYELPPGA 377


>sp|NUOD1_STRGG|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces griseus subsp. griseus

Query: 1   TEGYQVPPG 9
           TEG++VPPG
Sbjct: 363 TEGFRVPPG 371


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1   TEGYQVPPG 9
           TEG++VPPG
Sbjct: 366 TEGFRVPPG 374


>sp|NUOD_THEFY|NADH-QUINONE oxidoreductase subunit D|Thermobifida fusca (strain YX)

Query: 1   TEGYQVPPG 9
           TEG++VPPG
Sbjct: 357 TEGFRVPPG 365


>sp|NUOD_FRAAA|NADH-QUINONE oxidoreductase subunit D|Frankia alni (strain DSM 45986

Query: 1   TEGYQVPPG 9
           TEG++VPPG
Sbjct: 393 TEGFRVPPG 401


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   TEGYQVPPG 9
           TEGY  PPG
Sbjct: 340 TEGYTTPPG 348


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   TEGYQVPPGA 10
           TEGY VP GA
Sbjct: 323 TEGYHVPEGA 332


>sp|NUOD_ACIC1|NADH-QUINONE oxidoreductase subunit D|Acidothermus cellulolyticus (strain ATCC

Query: 1   TEGYQVPPG 9
           TEG+ VPPG
Sbjct: 363 TEGFHVPPG 371


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   TEGYQVPPG 9
           TEGY+ PPG
Sbjct: 334 TEGYRTPPG 342


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   TEGYQVPPG 9
           TEGY+VP G
Sbjct: 314 TEGYEVPAG 322


>sp|NUOD_SACEN|NADH-QUINONE oxidoreductase subunit D|Saccharopolyspora erythraea (strain ATCC

Query: 1   TEGYQVPPG 9
           TEG+ VPPG
Sbjct: 372 TEGFDVPPG 380




79|Sequence|391|400|VPPGATYTAI

>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   VPPGATYTAI 10
           VPPGATYTA+
Sbjct: 344 VPPGATYTAV 353


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   VPPGATYTAI 10
           VPPG TY A+
Sbjct: 345 VPPGETYAAV 354


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   VPPGATYTAI 10
           VP GATYTA+
Sbjct: 328 VPEGATYTAV 337


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1   VPPGATYTAI 10
           VPPG TY+A+
Sbjct: 371 VPPGQTYSAV 380


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   VPPGATYTAI 10
           VP G TYTA+
Sbjct: 334 VPAGTTYTAV 343




80|Sequence|396|405|TYTAIEAPKG

>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   TYTAIEAPKG 10
           TYTA+EAPKG
Sbjct: 339 TYTAVEAPKG 348


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   TYTAIEAPKG 10
           TY+A+EAPKG
Sbjct: 368 TYSAVEAPKG 377


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 2   YTAIEAPKG 10
           YTA+EAPKG
Sbjct: 330 YTAVEAPKG 338


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 335 TYVAVEAPKG 344


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   TYTAIEAPKG 10
           TY+A+EAPKG
Sbjct: 368 TYSAVEAPKG 377


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   TYTAIEAPKG 10
           TY+A+EAPKG
Sbjct: 368 TYSAVEAPKG 377


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   TYTAIEAPKG 10
           TY+A+EAPKG
Sbjct: 368 TYSAVEAPKG 377


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   TYTAIEAPKG 10
           TY+A+EAPKG
Sbjct: 368 TYSAVEAPKG 377


>sp|NUBCD_GEOUR|NADH-QUINONE oxidoreductase subunit B/C/D|Geotalea uraniireducens (strain Rf4)

Query: 2   YTAIEAPKG 10
           YTAIEAPKG
Sbjct: 727 YTAIEAPKG 735


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   TYTAIEAPKG 10
           TYTA+E+PKG
Sbjct: 333 TYTAVESPKG 342


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   TYTAIEAPKG 10
           TY+A+EAPKG
Sbjct: 368 TYSAVEAPKG 377


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   TYTAIEAPKG 10
           TY+A+EAPKG
Sbjct: 368 TYSAVEAPKG 377


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   TYTAIEAPKG 10
           TY+A+EAPKG
Sbjct: 368 TYSAVEAPKG 377


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 2   YTAIEAPKG 10
           YTA+EAPKG
Sbjct: 325 YTAVEAPKG 333


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   TYTAIEAPKG 10
           TYTA+E+PKG
Sbjct: 331 TYTAVESPKG 340


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   TYTAIEAPKG 10
           TY+A+EAPKG
Sbjct: 368 TYSAVEAPKG 377


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   TYTAIEAPKG 10
           TY+A+EAPKG
Sbjct: 368 TYSAVEAPKG 377


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 322 TYKAVEAPKG 331


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 326 TYMAVEAPKG 335


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 326 TYMAVEAPKG 335


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 368 TYAAVEAPKG 377


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 322 TYKAVEAPKG 331


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   TYTAIEAPKG 10
           TYTA+E+PKG
Sbjct: 349 TYTAVESPKG 358


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 326 TYMAVEAPKG 335


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 324 TYKAVEAPKG 333


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 326 TYMAVEAPKG 335


>sp|NUOD2_RHIEC|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain ATCC 51251

Query: 2   YTAIEAPKG 10
           Y+AIEAPKG
Sbjct: 338 YSAIEAPKG 346


>sp|NUOD2_RHIE6|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain CIAT 652)

Query: 2   YTAIEAPKG 10
           Y+AIEAPKG
Sbjct: 338 YSAIEAPKG 346


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 369 TYAAVEAPKG 378


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 324 TYKAVEAPKG 333


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 324 TYKAVEAPKG 333


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 324 TYKAVEAPKG 333


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 324 TYKAVEAPKG 333


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 324 TYKAVEAPKG 333


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 324 TYKAVEAPKG 333


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   TYTAIEAPKG 10
           TYTA+E PKG
Sbjct: 351 TYTAVEHPKG 360


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   TYTAIEAPKG 10
           TYTA+E PKG
Sbjct: 351 TYTAVEHPKG 360


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   TYTAIEAPKG 10
           TYTA+E PKG
Sbjct: 351 TYTAVEHPKG 360


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   TYTAIEAPKG 10
           TYTA+E PKG
Sbjct: 351 TYTAVEHPKG 360


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   TYTAIEAPKG 10
           TYTA+E PKG
Sbjct: 351 TYTAVEHPKG 360


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   TYTAIEAPKG 10
           TYTA+E PKG
Sbjct: 351 TYTAVEHPKG 360


>sp|NUBCD_GEOSL|NADH-QUINONE oxidoreductase subunit B/C/D|Geobacter sulfurreducens (strain ATCC

Query: 2   YTAIEAPKG 10
           Y+AIEAPKG
Sbjct: 726 YSAIEAPKG 734


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 368 TYCAVEAPKG 377


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 368 TYCAVEAPKG 377


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   TYTAIEAPKG 10
           TY A+EAPKG
Sbjct: 368 TYCAVEAPKG 377


>sp|NUBCD_GEOMG|NADH-QUINONE oxidoreductase subunit B/C/D|Geobacter metallireducens (strain ATCC

Query: 2   YTAIEAPKG 10
           Y+AIEAPKG
Sbjct: 725 YSAIEAPKG 733


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 2   YTAIEAPKG 10
           Y+AIEAPKG
Sbjct: 335 YSAIEAPKG 343


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 337 YAAVEAPKG 345


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 336 YVAVEAPKG 344


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 350 YVAVEAPKG 358


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YVAVEAPKG 338


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 336 YVAVEAPKG 344


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 335 YVAVEAPKG 343


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 326 YAAVEAPKG 334


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 338 YAAVEAPKG 346


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 336 YAAVEAPKG 344


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 332 YAAVEAPKG 340


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 332 YAAVEAPKG 340


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 332 YAAVEAPKG 340


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YVAVEAPKG 338


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YVAVEAPKG 338


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YVAVEAPKG 338


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 338 YAAVEAPKG 346


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 336 YAAVEAPKG 344


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1   TYTAIEAPKG 10
           TY+A+E+PKG
Sbjct: 376 TYSAVESPKG 385


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YVAVEAPKG 338


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YVAVEAPKG 338


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 339 YAAVEAPKG 347


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 326 YAAVEAPKG 334


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 346 YAAVEAPKG 354


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 336 YAAVEAPKG 344


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 336 YAAVEAPKG 344


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YVAVEAPKG 338


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 336 YAAVEAPKG 344


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 336 YAAVEAPKG 344


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 339 YAAVEAPKG 347


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 330 YAAVEAPKG 338


>sp|NUOD1_STRGG|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces griseus subsp. griseus

Query: 2   YTAIEAPKG 10
           YTA+E+PKG
Sbjct: 374 YTAVESPKG 382


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 324 YAAVEAPKG 332


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 324 YVAVEAPKG 332


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 351 YAAVEAPKG 359


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 329 YAAVEAPKG 337


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 351 YAAVEAPKG 359


>sp|NUOD1_CHLT3|NADH-QUINONE oxidoreductase subunit D 1|Chloroherpeton thalassium (strain ATCC

Query: 2   YTAIEAPKG 10
           Y AIEAPKG
Sbjct: 374 YHAIEAPKG 382


>sp|NUOD2_STRCO|NADH-QUINONE oxidoreductase subunit D 2|Streptomyces coelicolor (strain ATCC

Query: 2   YTAIEAPKG 10
           YTA+E+PKG
Sbjct: 374 YTAVESPKG 382


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   TYTAIEAPKG 10
           +YTA+E PKG
Sbjct: 350 SYTAVEHPKG 359


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 332 YVAVEAPKG 340


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 351 YAAVEAPKG 359


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 347 YAAVEAPKG 355


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 325 YKAVEAPKG 333


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 325 YKAVEAPKG 333


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 2   YTAIEAPKG 10
           Y A+EAPKG
Sbjct: 351 YAAVEAPKG 359


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   TYTAIEAPKG 10
           TY A+E PKG
Sbjct: 350 TYAAVEHPKG 359


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 2   YTAIEAPKG 10
           Y AIEAPKG
Sbjct: 326 YGAIEAPKG 334


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   TYTAIEAPKG 10
           TY A+E+PKG
Sbjct: 321 TYFAVESPKG 330


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   TYTAIEAPKG 10
           TY A+E PKG
Sbjct: 350 TYAAVEHPKG 359


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   TYTAIEAPKG 10
           TY A+E PKG
Sbjct: 350 TYAAVEHPKG 359


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   TYTAIEAPKG 10
           TY A+E PKG
Sbjct: 350 TYAAVEHPKG 359


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   TYTAIEAPKG 10
           TY A+E PKG
Sbjct: 350 TYAAVEHPKG 359


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   TYTAIEAPKG 10
           TY A+E PKG
Sbjct: 350 TYAAVEHPKG 359


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   TYTAIEAPKG 10
           TY A+E PKG
Sbjct: 350 TYAAVEHPKG 359


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   TYTAIEAPKG 10
           TY A+E PKG
Sbjct: 350 TYAAVEHPKG 359


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   TYTAIEAPKG 10
           TY A+E PKG
Sbjct: 350 TYAAVEHPKG 359




81|Sequence|401|410|EAPKGEFGVY

>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 350 EAPKGEFGVY 359


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 330 EAPKGEFGVY 339


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 331 EAPKGEFGVY 340


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 327 EAPKGEFGVY 336


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 331 EAPKGEFGVY 340


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 331 EAPKGEFGVY 340


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 339 EAPKGEFGVY 348


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 329 EAPKGEFGVY 338


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 331 EAPKGEFGVY 340


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 340 EAPKGEFGVY 349


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 336 EAPKGEFGVY 345


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 344 EAPKGEFGVY 353


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 327 EAPKGEFGVY 336


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 329 EAPKGEFGVY 338


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 340 EAPKGEFGVY 349


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 340 EAPKGEFGVY 349


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 342 EAPKGEFGVY 351


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 329 EAPKGEFGVY 338


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 329 EAPKGEFGVY 338


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 340 EAPKGEFGVY 349


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 336 EAPKGEFGVY 345


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 336 EAPKGEFGVY 345


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 329 EAPKGEFGVY 338


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 328 EAPKGEFGVY 337


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 341 EAPKGEFGVY 350


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 343 EAPKGEFGVY 352


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 354 EAPKGEFGVY 363


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 329 EAPKGEFGVY 338


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 329 EAPKGEFGVY 338


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 329 EAPKGEFGVY 338


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 340 EAPKGEFGVY 349


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   EAPKGEFGVY 10
           EAPKGEFG+Y
Sbjct: 355 EAPKGEFGIY 364


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   EAPKGEFGVY 10
           EAPKGEFG+Y
Sbjct: 355 EAPKGEFGIY 364


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 333 EAPKGEFGVY 342


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 343 EAPKGEFGVY 352


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 345 EAPKGEFGVY 354


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 329 EAPKGEFGVY 338


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 329 EAPKGEFGVY 338


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 351 EAPKGEFGVY 360


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 349 EAPKGEFGVY 358


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   EAPKGEFGVY 10
           EAPKGEFG+Y
Sbjct: 355 EAPKGEFGIY 364


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   EAPKGEFGVY 10
           EAPKGEFG+Y
Sbjct: 355 EAPKGEFGIY 364


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 328 EAPKGEFGVY 337


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 328 EAPKGEFGVY 337


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 355 EAPKGEFGVY 364


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   EAPKGEFGVY 10
           E+PKGEFGVY
Sbjct: 341 ESPKGEFGVY 350


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFG+Y
Sbjct: 355 EAPKGEFGIY 364


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 355 EAPKGEFGVY 364


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   EAPKGEFGVY 10
           E+PKGEFGVY
Sbjct: 344 ESPKGEFGVY 353


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   EAPKGEFGVY 10
           E+PKGEFGVY
Sbjct: 341 ESPKGEFGVY 350


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 340 EAPKGEFGVY 349


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 340 EAPKGEFGVY 349


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 340 EAPKGEFGVY 349


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 336 EAPKGEFGVY 345


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 330 EAPKGEFGVY 339


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFGVY
Sbjct: 334 EAPKGEFGVY 343


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   EAPKGEFGVY 10
           E+PKGEFGVY
Sbjct: 343 ESPKGEFGVY 352


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 350 EGPKGEFGVY 359


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   EAPKGEFGVY 10
           EAPKGEFGV+
Sbjct: 342 EAPKGEFGVF 351


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   EAPKGEFGVY 10
           E+PKGEFGVY
Sbjct: 338 ESPKGEFGVY 347


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGV+
Sbjct: 354 EAPKGEFGVF 363


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   EAPKGEFGVY 10
           EAPKGEFGV+
Sbjct: 334 EAPKGEFGVF 343


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   EAPKGEFGVY 10
           E+PKGEFGVY
Sbjct: 354 ESPKGEFGVY 363


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGV+
Sbjct: 350 EAPKGEFGVF 359


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   EAPKGEFGVY 10
           EAPKGEFGV+
Sbjct: 340 EAPKGEFGVF 349


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGV+
Sbjct: 334 EAPKGEFGVF 343


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   EAPKGEFGVY 10
           E+PKGEFGVY
Sbjct: 336 ESPKGEFGVY 345


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EQPKGEFGVY 364


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EQPKGEFGVY 364


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 374 EAPKGEFGCY 383


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   EAPKGEFGVY 10
           E+PKGEFGVY
Sbjct: 326 ESPKGEFGVY 335


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EQPKGEFGVY 364


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EQPKGEFGVY 364


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EQPKGEFGVY 364


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 355 EHPKGEFGVY 364


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NDHH1_GLOVI|NAD(P)H-QUINONE oxidoreductase subunit H 1|Gloeobacter violaceus (strain ATCC 29082

Query: 1   EAPKGEFGVY 10
           EAPKGE GVY
Sbjct: 331 EAPKGELGVY 340


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 356 EHPKGEFGVY 365


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 356 EHPKGEFGVY 365


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 356 EHPKGEFGVY 365


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 356 EHPKGEFGVY 365


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 356 EHPKGEFGVY 365


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   EAPKGEFGVY 10
           E PKGEFGVY
Sbjct: 356 EHPKGEFGVY 365


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 355 EAPKGEFGCY 364


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   EAPKGEFGVY 10
           EAPKGEFGV+
Sbjct: 334 EAPKGEFGVF 343


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   EAPKGEFGVY 10
           EAPKGEFGV+
Sbjct: 336 EAPKGEFGVF 345


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   EAPKGEFGVY 10
           EAPKGEFG Y
Sbjct: 373 EAPKGEFGCY 382


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 356 EHPKGEFGIY 365


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 356 EHPKGEFGIY 365


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 356 EHPKGEFGIY 365


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 356 EHPKGEFGIY 365


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 356 EHPKGEFGIY 365


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   EAPKGEFGVY 10
           EAPKGEF VY
Sbjct: 330 EAPKGEFAVY 339


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   EAPKGEFGVY 10
           E PKGEFG+Y
Sbjct: 355 EHPKGEFGIY 364


>sp|NUOD_CAMC1|NADH-QUINONE oxidoreductase subunit D|Campylobacter concisus (strain 13826)

Query: 1   EAPKGEFGVY 10
           E+PKGE G+Y
Sbjct: 347 ESPKGELGIY 356


>sp|NUOD2_RHIEC|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain ATCC 51251

Query: 1   EAPKGEFGVY 10
           EAPKGE G Y
Sbjct: 342 EAPKGELGFY 351


>sp|NUOD2_RHIE6|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium etli (strain CIAT 652)

Query: 1   EAPKGEFGVY 10
           EAPKGE G Y
Sbjct: 342 EAPKGELGFY 351


>sp|NUOD2_RHIME|NADH-QUINONE oxidoreductase subunit D 2|Rhizobium meliloti (strain 1021)

Query: 1   EAPKGEFGVY 10
           EAPKGE G Y
Sbjct: 342 EAPKGELGFY 351


>sp|NUOD2_SINMW|NADH-QUINONE oxidoreductase subunit D 2|Sinorhizobium medicae (strain WSM419)

Query: 1   EAPKGEFGVY 10
           EAPKGE G Y
Sbjct: 342 EAPKGELGFY 351


>sp|NUOD1_CHLT3|NADH-QUINONE oxidoreductase subunit D 1|Chloroherpeton thalassium (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGE G Y
Sbjct: 378 EAPKGELGFY 387


>sp|NUOD_CAMC5|NADH-QUINONE oxidoreductase subunit D|Campylobacter curvus (strain 525.92)

Query: 1   EAPKGEFGVY 10
           E+PKGE G+Y
Sbjct: 347 ESPKGELGIY 356


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGE GVY
Sbjct: 335 ETPKGELGVY 344


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 1   EAPKGEFGVY 10
           EAPKGE G Y
Sbjct: 339 EAPKGELGFY 348


>sp|NUOD_GEOUR|NADH-QUINONE oxidoreductase subunit D|Geotalea uraniireducens (strain Rf4)

Query: 1   EAPKGEFGVY 10
           EAPKGE G Y
Sbjct: 328 EAPKGELGYY 337


>sp|NUOD_TRIL1|NADH-QUINONE oxidoreductase subunit D|Trichlorobacter lovleyi (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGE G Y
Sbjct: 328 EAPKGELGFY 337


>sp|NUOD_GEOSL|NADH-QUINONE oxidoreductase subunit D|Geobacter sulfurreducens (strain ATCC

Query: 1   EAPKGEFGVY 10
           EAPKGE G Y
Sbjct: 328 EAPKGELGYY 337


>sp|NUOD1_THEYD|NADH-QUINONE oxidoreductase subunit D 1|Thermodesulfovibrio yellowstonii (strain

Query: 1   EAPKGEFGVY 10
           EAP+GE G Y
Sbjct: 335 EAPRGELGFY 344


>sp|NUOD_SULDN|NADH-QUINONE oxidoreductase subunit D|Sulfurimonas denitrificans (strain ATCC

Query: 1   EAPKGEFGVY 10
           E+PKGE G Y
Sbjct: 350 ESPKGELGFY 359


>sp|NUOD2_STRCO|NADH-QUINONE oxidoreductase subunit D 2|Streptomyces coelicolor (strain ATCC

Query: 1   EAPKGEFGVY 10
           E+PKGE GV+
Sbjct: 378 ESPKGELGVH 387


>sp|NUOD1_STRGG|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces griseus subsp. griseus

Query: 1   EAPKGEFGVY 10
           E+PKGE GV+
Sbjct: 378 ESPKGELGVH 387


>sp|NUOD2_ROSCS|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus castenholzii (strain DSM

Query: 1   EAPKGEFGVY 10
           E+PKGE G Y
Sbjct: 312 ESPKGELGFY 321


>sp|NUOD2_SOLUE|NADH-QUINONE oxidoreductase subunit D 2|Solibacter usitatus (strain Ellin6076)

Query: 1   EAPKGEFGVY 10
           EAPKGE G Y
Sbjct: 308 EAPKGELGYY 317


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 1   EAPKGEFGVY 10
           E+PKGE GV+
Sbjct: 381 ESPKGELGVH 390


>sp|NUOD1_ROSS1|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus sp. (strain RS-1)

Query: 1   EAPKGEFGVY 10
           E+PKGE G Y
Sbjct: 312 ESPKGELGFY 321


>sp|NUOD1_SALAI|NADH-QUINONE oxidoreductase subunit D 1|Salinispora arenicola (strain CNS-205)

Query: 1   EAPKGEFGVY 10
           EAP+GE GV+
Sbjct: 379 EAPRGELGVH 388


>sp|NUOD_SULNB|NADH-QUINONE oxidoreductase subunit D|Sulfurovum sp. (strain NBC37-1)

Query: 1   EAPKGEFGVY 10
           E+PKGE G Y
Sbjct: 347 ESPKGELGFY 356


>sp|NUOD1_SALTO|NADH-QUINONE oxidoreductase subunit D 1|Salinispora tropica (strain ATCC BAA-916

Query: 1   EAPKGEFGVY 10
           EAP+GE GV+
Sbjct: 379 EAPRGELGVH 388


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   EAPKGEFGVY 10
           EA  GEFGVY
Sbjct: 330 EAATGEFGVY 339


>sp|NUOD1_CHLAA|NADH-QUINONE oxidoreductase subunit D 1|Chloroflexus aurantiacus (strain ATCC

Query: 1   EAPKGEFGVY 10
           E+PKGE G Y
Sbjct: 307 ESPKGELGFY 316


>sp|NUOD_DEHMC|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain CBDB1)

Query: 1   EAPKGEFGVY 10
           E PKGE G Y
Sbjct: 305 EGPKGELGFY 314


>sp|NUOD_DEHMB|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGE G Y
Sbjct: 305 EGPKGELGFY 314


>sp|NUOD_DEHM1|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1   EAPKGEFGVY 10
           E PKGE G Y
Sbjct: 305 EGPKGELGFY 314


>sp|NUOD1_KORVE|NADH-QUINONE oxidoreductase subunit D 1|Koribacter versatilis (strain Ellin345)

Query: 1   EAPKGEFGVY 10
           EAPKGE G +
Sbjct: 319 EAPKGELGYF 328


>sp|NUOD_GEOTN|NADH-QUINONE oxidoreductase subunit D|Geobacillus thermodenitrificans (strain

Query: 1   EAPKGEFGVY 10
           EAP+GE G Y
Sbjct: 304 EAPRGEIGCY 313




82|Sequence|406|415|EFGVYLVSDG

>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 359 EFGVYLVSDG 368


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 346 EFGVYLVSDG 355


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 343 EFGVYLVSDG 352


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 349 EFGVYLVSDG 358


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 345 EFGVYLVSDG 354


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 335 EFGVYLVSDG 344


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 344 EFGVYLVSDG 353


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 345 EFGVYLVSDG 354


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 345 EFGVYLVSDG 354


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 341 EFGVYLVSDG 350


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 348 EFGVYLVSDG 357


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 341 EFGVYLVSDG 350


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   EFGVYLVSDG 10
           EFGVYL+SDG
Sbjct: 339 EFGVYLISDG 348


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 345 EFGVYLVSDG 354


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 345 EFGVYLVSDG 354


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 339 EFGVYLVSDG 348


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   EFGVYLVSDG 10
           EFGVYL+SDG
Sbjct: 360 EFGVYLISDG 369


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   EFGVYLVSDG 10
           EFGVYL+SDG
Sbjct: 334 EFGVYLISDG 343


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   EFGVYLVSDG 10
           EFGVYL+SDG
Sbjct: 360 EFGVYLISDG 369


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   EFGVYLVSDG 10
           EFGVYLVSDG
Sbjct: 335 EFGVYLVSDG 344


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   EFGVYLVSDG 10
           EFGVYL+SDG
Sbjct: 339 EFGVYLISDG 348


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   EFGVYLVSDG 10
           EFGVYL+SDG
Sbjct: 360 EFGVYLISDG 369


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   EFGVYLVSDG 10
           EFGVYL+SDG
Sbjct: 360 EFGVYLISDG 369


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 361 EFGIYLVSDG 370


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 361 EFGIYLVSDG 370


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 333 EFGVYIVSDG 342


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 333 EFGVYIVSDG 342


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   EFGVYLVSDG 10
           EFGVYL+SDG
Sbjct: 360 EFGVYLISDG 369


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 336 EFGVYIVSDG 345


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 336 EFGVYIVSDG 345


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 336 EFGVYIVSDG 345


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 341 EFGVYIVSDG 350


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   EFGVYLVSDG 10
           EFG+YLVSDG
Sbjct: 360 EFGIYLVSDG 369


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 333 EFGVYIVSDG 342


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   EFGVYLVSDG 10
           EFG+YL+SDG
Sbjct: 360 EFGIYLISDG 369


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 360 EFGVYIVSDG 369


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 360 EFGVYIVSDG 369


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 360 EFGVYIVSDG 369


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 360 EFGVYIVSDG 369


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 360 EFGVYIVSDG 369


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   EFGVYLVSDG 10
           EFG+YL+SDG
Sbjct: 360 EFGIYLISDG 369


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 359 EFGVYLVADG 368


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 341 EFGVYLVADG 350


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 349 EFGVYLVADG 358


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 336 EFGVYIVSDG 345


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 346 EFGVYLVADG 355


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+YL+SDG
Sbjct: 360 EFGIYLISDG 369


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 355 EFGVYLVADG 364


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 355 EFGVYLVADG 364


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 339 EFGVYLVADG 348


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYMVSDG 369


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYMVSDG 369


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 348 EFGVYLVADG 357


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYMVSDG 369


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYMVSDG 369


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 338 EFGVYIVSDG 347


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYMVSDG 369


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYMVSDG 369


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 356 EFGVYLVADG 365


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+YL+SDG
Sbjct: 360 EFGIYLISDG 369


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 341 EFGVYLVADG 350


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   EFGVYLVSDG 10
           EFG+YL+SDG
Sbjct: 360 EFGIYLISDG 369


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   EFGVYLVSDG 10
           EFG+YL+SDG
Sbjct: 360 EFGIYLISDG 369


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYIVSDG 369


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYIVSDG 369


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 345 EFGVYLVADG 354


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 347 EFGVYLVADG 356


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 345 EFGVYLVADG 354


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   EFGVYLVSDG 10
           EFG+YL+SDG
Sbjct: 360 EFGIYLISDG 369


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 350 EFGVYLVADG 359


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 339 EFGVYLVADG 348


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 348 EFGVYLVADG 357


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYIVSDG 369


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   EFGVYLVSDG 10
           EFGVY++SDG
Sbjct: 361 EFGVYIISDG 370


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYIVSDG 369


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 335 EFGVYLVADG 344


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   EFGVYLVSDG 10
           EFGVY++SDG
Sbjct: 361 EFGVYIISDG 370


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   EFGVYLVSDG 10
           EFGVY++SDG
Sbjct: 361 EFGVYIISDG 370


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   EFGVYLVSDG 10
           EFGV+LVSDG
Sbjct: 345 EFGVFLVSDG 354


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   EFGVYLVSDG 10
           EFGVYLV+DG
Sbjct: 346 EFGVYLVADG 355


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   EFGVYLVSDG 10
           EFGV+LVSDG
Sbjct: 339 EFGVFLVSDG 348


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   EFGVYLVSDG 10
           EFGVY++SDG
Sbjct: 361 EFGVYIISDG 370


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   EFGVYLVSDG 10
           EFGVY++SDG
Sbjct: 361 EFGVYIISDG 370


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   EFGVYLVSDG 10
           EFGV+LVSDG
Sbjct: 339 EFGVFLVSDG 348


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   EFGVYLVSDG 10
           EFGVY++SDG
Sbjct: 361 EFGVYIISDG 370


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   EFGVYLVSDG 10
           EFGV+LVSDG
Sbjct: 339 EFGVFLVSDG 348


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   EFGVYLVSDG 10
           EFGVYLVS+G
Sbjct: 354 EFGVYLVSNG 363


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   EFGVYLVSDG 10
           EFG+Y VSDG
Sbjct: 360 EFGIYFVSDG 369


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   EFGVYLVSDG 10
           EFG+Y++SDG
Sbjct: 360 EFGIYMISDG 369


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   EFGVYLVSDG 10
           EFG YLVSDG
Sbjct: 378 EFGCYLVSDG 387


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   EFGVYLVSDG 10
           EFG+YLV+DG
Sbjct: 361 EFGIYLVADG 370


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   EFGVYLVSDG 10
           EFG YLVSDG
Sbjct: 378 EFGCYLVSDG 387


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   EFGVYLVSDG 10
           EFGVYL SDG
Sbjct: 339 EFGVYLYSDG 348


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   EFGVYLVSDG 10
           EFGVYL SDG
Sbjct: 339 EFGVYLYSDG 348


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   EFGVYLVSDG 10
           EFG+YLV+DG
Sbjct: 361 EFGIYLVADG 370


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+YLV+DG
Sbjct: 361 EFGIYLVADG 370


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   EFGVYLVSDG 10
           EFG+Y+VSDG
Sbjct: 360 EFGIYMVSDG 369


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFGVYLV DG
Sbjct: 345 EFGVYLVGDG 354


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   EFGVYLVSDG 10
           EFG+Y++SDG
Sbjct: 360 EFGIYIISDG 369


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   EFGVYLVSDG 10
           EFGVY VSDG
Sbjct: 360 EFGVYAVSDG 369


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLISDG 387


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLISDG 387


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLISDG 387


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLISDG 387


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 379 EFGCYLISDG 388


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   EFGVYLVSDG 10
           EFGVY VSDG
Sbjct: 360 EFGVYAVSDG 369


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   EFGVYLVSDG 10
           EFGVY+VSDG
Sbjct: 331 EFGVYIVSDG 340


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   EFGVYLVSDG 10
           EFGV++VSDG
Sbjct: 341 EFGVFVVSDG 350


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   EFGVYLVSDG 10
           E GVYLVSDG
Sbjct: 340 ELGVYLVSDG 349


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   EFGVYLVSDG 10
           EFGV+LV+DG
Sbjct: 355 EFGVFLVADG 364


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   EFGVYLVSDG 10
           EF VYLVSDG
Sbjct: 335 EFAVYLVSDG 344


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   EFGVYLVSDG 10
           EFGVY+V+DG
Sbjct: 339 EFGVYVVADG 348


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   EFGVYLVSDG 10
           EFG+Y +SDG
Sbjct: 360 EFGIYAISDG 369


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG+Y +SDG
Sbjct: 360 EFGIYAISDG 369


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   EFGVYLVSDG 10
           EFG+Y +SDG
Sbjct: 360 EFGIYAISDG 369


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLMSDG 387


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLMSDG 387


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLMSDG 387


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLMSDG 387


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLMSDG 387


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLMSDG 387


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLMSDG 387


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   EFGVYLVSDG 10
           EFG YL+SDG
Sbjct: 378 EFGCYLMSDG 387


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   EFGVYLVSDG 10
           EFGV+LVS+G
Sbjct: 359 EFGVFLVSNG 368


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   EFGVYLVSDG 10
           EFG+Y +SDG
Sbjct: 360 EFGIYAISDG 369


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   EFGVYLVSDG 10
           EFG+Y +SDG
Sbjct: 360 EFGIYAISDG 369


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   EFGVYLVSDG 10
           EFG+Y +SDG
Sbjct: 360 EFGIYAISDG 369


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   EFGVYLVSDG 10
           EFG Y++SDG
Sbjct: 360 EFGCYMISDG 369


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   EFGVYLVSDG 10
           EFGVY+ SDG
Sbjct: 360 EFGVYIKSDG 369


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   EFGVYLVSDG 10
           EFGVY+ SDG
Sbjct: 360 EFGVYIKSDG 369


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   EFGVYLVSDG 10
           EFGVY+ SDG
Sbjct: 360 EFGVYIKSDG 369


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   EFGVYLVSDG 10
           EFGVY+ SDG
Sbjct: 360 EFGVYIKSDG 369


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   EFGVYLVSDG 10
           EFGVY+ SDG
Sbjct: 360 EFGVYIKSDG 369


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   EFGVYLVSDG 10
           EFGVY+ SDG
Sbjct: 360 EFGVYIKSDG 369


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   EFGVYLVSDG 10
           EFGVY+ SDG
Sbjct: 360 EFGVYIKSDG 369


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   EFGVYLVSDG 10
           EFGVY+ SDG
Sbjct: 360 EFGVYIKSDG 369


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   EFGVYLVSDG 10
           EFGVY+ SDG
Sbjct: 360 EFGVYIKSDG 369


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   EFGVYLVSDG 10
           EFGV+L SDG
Sbjct: 347 EFGVFLKSDG 356


>sp|TYRB_ECOLI|AROMATIC-AMINO-ACID aminotransferase|Escherichia coli (strain K12)

Query: 1   EFGVYLVSDG 10
           EFGVYL++ G
Sbjct: 365 EFGVYLIASG 374


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   EFGVYLVSDG 10
           EFGVYL S G
Sbjct: 332 EFGVYLYSQG 341


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   EFGVYLVSDG 10
           EFGVYL S G
Sbjct: 334 EFGVYLYSQG 343


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   EFGVYLVSDG 10
           EFGVYL S G
Sbjct: 334 EFGVYLYSQG 343


>sp|TYRB_SALTY|AROMATIC-AMINO-ACID aminotransferase|Salmonella typhimurium (strain LT2 /

Query: 1   EFGVYLVSDG 10
           EFGVYL++ G
Sbjct: 365 EFGVYLIASG 374


>sp|TYRB_KLEPN|TYROSINE aminotransferase|Klebsiella pneumoniae

Query: 1   EFGVYLVSDG 10
           EFGVYL++ G
Sbjct: 365 EFGVYLIASG 374


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   EFGVYLVSDG 10
           EFGVYL S G
Sbjct: 332 EFGVYLYSQG 341


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   EFGVYLVSDG 10
           EFGVYL S G
Sbjct: 334 EFGVYLYSQG 343


>sp|NUOD_TRIL1|NADH-QUINONE oxidoreductase subunit D|Trichlorobacter lovleyi (strain ATCC

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 333 ELGFYLVSDG 342


>sp|NUOD1_ROSS1|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus sp. (strain RS-1)

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 317 ELGFYLVSDG 326


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   EFGVYLVSDG 10
           EFGVYL S G
Sbjct: 334 EFGVYLYSQG 343


>sp|NUOD2_ROSCS|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus castenholzii (strain DSM

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 317 ELGFYLVSDG 326


>sp|NUOD_ACIC1|NADH-QUINONE oxidoreductase subunit D|Acidothermus cellulolyticus (strain ATCC

Query: 1   EFGVYLVSDG 10
           E GV+LVSDG
Sbjct: 383 ELGVHLVSDG 392


>sp|NUOD1_SORC5|NADH-QUINONE oxidoreductase subunit D 1|Sorangium cellulosum (strain So ce56)

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 347 ELGFYLVSDG 356


>sp|NUOCD_BDEBA|NADH-QUINONE oxidoreductase subunit C/D|Bdellovibrio bacteriovorus (strain ATCC

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 503 ELGFYLVSDG 512


>sp|NUOD1_CHLAA|NADH-QUINONE oxidoreductase subunit D 1|Chloroflexus aurantiacus (strain ATCC

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 312 ELGFYLVSDG 321


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   EFGVYLVSDG 10
           EFGVYL S G
Sbjct: 334 EFGVYLYSTG 343


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   EFGVYLVSDG 10
           EFGVYL S G
Sbjct: 334 EFGVYLYSTG 343


>sp|NUOD_THEM4|NADH-QUINONE oxidoreductase subunit D|Thermosipho melanesiensis (strain DSM

Query: 1   EFGVYLVSDG 10
           E+G Y+VSDG
Sbjct: 309 EYGYYMVSDG 318


>sp|NUOD_GEOUR|NADH-QUINONE oxidoreductase subunit D|Geotalea uraniireducens (strain Rf4)

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 333 ELGYYLVSDG 342


>sp|NUOD_DEHMC|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain CBDB1)

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 310 ELGFYLVSDG 319


>sp|NUOD_DEHMB|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 310 ELGFYLVSDG 319


>sp|NUOD_DEHM1|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 310 ELGFYLVSDG 319


>sp|NUOD2_CYTH3|NADH-QUINONE oxidoreductase subunit D 2|Cytophaga hutchinsonii (strain ATCC

Query: 1   EFGVYLVSDG 10
           E G YLVSDG
Sbjct: 336 ELGYYLVSDG 345


>sp|NUOD_PELPD|NADH-QUINONE oxidoreductase subunit D|Pelobacter propionicus (strain DSM 2379

Query: 1   EFGVYLVSDG 10
           E G YL+SDG
Sbjct: 346 ELGFYLISDG 355




83|Sequence|411|420|LVSDGSSRPY

>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDGS+RPY
Sbjct: 348 LVSDGSNRPY 357


>sp|NUOD_TRIL1|NADH-QUINONE oxidoreductase subunit D|Trichlorobacter lovleyi (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDGSS+PY
Sbjct: 338 LVSDGSSKPY 347


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 350 LVSDGSNKPY 359


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 350 LVSDGSNKPY 359


>sp|NUOD1_ROSS1|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus sp. (strain RS-1)

Query: 1   LVSDGSSRPY 10
           LVSDGS RPY
Sbjct: 322 LVSDGSERPY 331


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 364 LVSDGSNKPY 373


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD2_ROSCS|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus castenholzii (strain DSM

Query: 1   LVSDGSSRPY 10
           LVSDGS RPY
Sbjct: 322 LVSDGSERPY 331


>sp|NUOD_PELPD|NADH-QUINONE oxidoreductase subunit D|Pelobacter propionicus (strain DSM 2379

Query: 1   LVSDGSSRPY 10
           L+SDGS RPY
Sbjct: 351 LISDGSGRPY 360


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   LVSDGSSRPY 10
           LV+DGS+RPY
Sbjct: 354 LVADGSNRPY 363


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 350 LVSDGSNKPY 359


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   LVSDGSSRPY 10
           LV+DGS+RPY
Sbjct: 364 LVADGSNRPY 373


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   LVSDGSSRPY 10
           L+SDG+S+PY
Sbjct: 339 LISDGTSKPY 348


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   LVSDGSSRPY 10
           LVSDG++RPY
Sbjct: 340 LVSDGTNRPY 349


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 346 LVSDGSNKPY 355


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 350 LVSDGSNKPY 359


>sp|NUOCD_ALIB4|NADH-QUINONE oxidoreductase subunit C/D|Aliarcobacter butzleri (strain RM4018)

Query: 1   LVSDGSSRPY 10
           +VSDGS RPY
Sbjct: 492 IVSDGSGRPY 501


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 350 LVSDGSNKPY 359


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 354 LVSDGSNKPY 363


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_GEOUR|NADH-QUINONE oxidoreductase subunit D|Geotalea uraniireducens (strain Rf4)

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 338 LVSDGSTKPY 347


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 351 LVSDGSNKPY 360


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 1   LVSDGSSRPY 10
           +VSDGS RPY
Sbjct: 349 IVSDGSGRPY 358


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   LVSDGSSRPY 10
           LVSDG++RPY
Sbjct: 346 LVSDGTNRPY 355


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   LVSDGSSRPY 10
           LV+DG++RPY
Sbjct: 350 LVADGTNRPY 359


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   LVSDGSSRPY 10
           LV+DG++RPY
Sbjct: 352 LVADGTNRPY 361


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   LVSDGSSRPY 10
           +VSDG++RPY
Sbjct: 338 IVSDGTNRPY 347


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   LVSDGSSRPY 10
           +VSDG++RPY
Sbjct: 338 IVSDGTNRPY 347


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   LVSDGSSRPY 10
           LV+DG++RPY
Sbjct: 350 LVADGTNRPY 359


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 349 LVSDGTNKPY 358


>sp|NUOD_MYCA9|NADH-QUINONE oxidoreductase subunit D|Mycobacteroides abscessus (strain ATCC

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 380 MVSDGGTRPY 389


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   LVSDGSSRPY 10
           +VSDG++RPY
Sbjct: 338 IVSDGTNRPY 347


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOCD_BDEBA|NADH-QUINONE oxidoreductase subunit C/D|Bdellovibrio bacteriovorus (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDGS+ PY
Sbjct: 508 LVSDGSANPY 517


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   LVSDGSSRPY 10
           LVSDGS++PY
Sbjct: 344 LVSDGSNKPY 353


>sp|NUOD_MYCVP|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium vanbaalenii (strain DSM

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 390 MVSDGGTRPY 399


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   LVSDGSSRPY 10
           LV+DGS++PY
Sbjct: 351 LVADGSNKPY 360


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 350 LVSDGTNKPY 359


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOD_MYCPA|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium paratuberculosis (strain

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 389 MVSDGGTRPY 398


>sp|NUOD_MYCA1|NADH-QUINONE oxidoreductase subunit D|Mycobacterium avium (strain 104)

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 389 MVSDGGTRPY 398


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   LVSDGSSRPY 10
           LV+DG++RPY
Sbjct: 340 LVADGTNRPY 349


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_MYCTU|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain ATCC

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 388 MVSDGGTRPY 397


>sp|NUOD_MYCTO|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain CDC

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 388 MVSDGGTRPY 397


>sp|NUOD_MYCTA|NADH-QUINONE oxidoreductase subunit D|Mycobacterium tuberculosis (strain ATCC

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 388 MVSDGGTRPY 397


>sp|NUOD_MYCBP|NADH-QUINONE oxidoreductase subunit D|Mycobacterium bovis (strain BCG /

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 388 MVSDGGTRPY 397


>sp|NUOD_MYCBO|NADH-QUINONE oxidoreductase subunit D|Mycobacterium bovis (strain ATCC BAA-935

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 388 MVSDGGTRPY 397


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_MYXXD|NADH-QUINONE oxidoreductase subunit D|Myxococcus xanthus (strain DK1622)

Query: 1   LVSDGSSRPY 10
           LVSDG  RPY
Sbjct: 363 LVSDGRGRPY 372


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   LVSDGSSRPY 10
           LVSDG+ +PY
Sbjct: 344 LVSDGTDKPY 353


>sp|NUOD_MYCUA|NADH-QUINONE oxidoreductase subunit D|Mycobacterium ulcerans (strain Agy99)

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 380 MVSDGGTRPY 389


>sp|NUOD_MYCMM|NADH-QUINONE oxidoreductase subunit D|Mycobacterium marinum (strain ATCC BAA-535

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 380 MVSDGGTRPY 389


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_CUTAK|NADH-QUINONE oxidoreductase subunit D|Cutibacterium acnes (strain DSM 16379

Query: 1   LVSDGSSRPY 10
           LVSDG  RPY
Sbjct: 381 LVSDGGVRPY 390


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 353 LVSDGTNKPY 362


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 365 LVSDGANKPY 374


>sp|NUOD_NOCFA|NADH-QUINONE oxidoreductase subunit D|Nocardia farcinica (strain IFM 10152)

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 401 MVSDGGTRPY 410


>sp|NUOD_MYCGI|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium gilvum (strain PYR-GCK)

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 399 MVSDGGTRPY 408


>sp|NUOD_MOOTA|NADH-QUINONE oxidoreductase subunit D|Moorella thermoacetica (strain ATCC 39073

Query: 1   LVSDGSSRPY 10
           LVSDG S+PY
Sbjct: 319 LVSDGGSKPY 328


>sp|NUOD_MYCS2|NADH-QUINONE oxidoreductase subunit D|Mycolicibacterium smegmatis (strain ATCC

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 390 MVSDGGTRPY 399


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNQPY 353


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 366 LVSDGANKPY 375


>sp|NUOD1_CHLAA|NADH-QUINONE oxidoreductase subunit D 1|Chloroflexus aurantiacus (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDGS +PY
Sbjct: 317 LVSDGSGKPY 326


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 366 LVSDGANKPY 375


>sp|NUOD_MYCSS|NADH-QUINONE oxidoreductase subunit D|Mycobacterium sp. (strain MCS)

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 394 MVSDGGTRPY 403


>sp|NUOD_MYCSK|NADH-QUINONE oxidoreductase subunit D|Mycobacterium sp. (strain KMS)

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 394 MVSDGGTRPY 403


>sp|NUOD_MYCSJ|NADH-QUINONE oxidoreductase subunit D|Mycobacterium sp. (strain JLS)

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 394 MVSDGGTRPY 403


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   LVSDGSSRPY 10
           +VSDG++RPY
Sbjct: 346 IVSDGTNRPY 355


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG ++PY
Sbjct: 345 LVSDGGNKPY 354


>sp|NUOD_DESRM|NADH-QUINONE oxidoreductase subunit D|Desulforamulus reducens (strain ATCC

Query: 1   LVSDGSSRPY 10
           +VSDGS++PY
Sbjct: 314 VVSDGSTKPY 323


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374


>sp|NUOD2_ROSS1|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus sp. (strain RS-1)

Query: 1   LVSDGSSRPY 10
           +VSDGS++PY
Sbjct: 365 IVSDGSAKPY 374


>sp|NUOD1_ROSCS|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus castenholzii (strain DSM

Query: 1   LVSDGSSRPY 10
           +VSDGS++PY
Sbjct: 365 IVSDGSAKPY 374


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   LVSDGSSRPY 10
           L SDG++RPY
Sbjct: 344 LYSDGTNRPY 353


>sp|NUOD_CARHZ|NADH-QUINONE oxidoreductase subunit D|Carboxydothermus hydrogenoformans (strain

Query: 1   LVSDGSSRPY 10
           +VSDGS++PY
Sbjct: 313 VVSDGSTKPY 322


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   LVSDGSSRPY 10
           LVSDG+ +PY
Sbjct: 340 LVSDGTGKPY 349


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374


>sp|NUOD1_SALTO|NADH-QUINONE oxidoreductase subunit D 1|Salinispora tropica (strain ATCC BAA-916

Query: 2   VSDGSSRPY 10
           VSDG +RPY
Sbjct: 390 VSDGGTRPY 398


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   LVSDGSSRPY 10
           L SDG++RPY
Sbjct: 344 LYSDGTNRPY 353


>sp|NUOD1_SALAI|NADH-QUINONE oxidoreductase subunit D 1|Salinispora arenicola (strain CNS-205)

Query: 2   VSDGSSRPY 10
           VSDG +RPY
Sbjct: 390 VSDGGTRPY 398


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374


>sp|NUOD1_STRGG|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces griseus subsp. griseus

Query: 1   LVSDGSSRPY 10
           +VSDG +RPY
Sbjct: 388 VVSDGGTRPY 397


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   LVSDGSSRPY 10
           LVSDG+++PY
Sbjct: 344 LVSDGTNKPY 353


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 344 LISDGTNKPY 353


>sp|NUOD_DEHMC|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain CBDB1)

Query: 1   LVSDGSSRPY 10
           LVSDG+ +PY
Sbjct: 315 LVSDGTDKPY 324


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374


>sp|NUOD_CITBB|NADH-QUINONE oxidoreductase subunit D|Citrifermentans bemidjiense (strain ATCC

Query: 1   LVSDGSSRPY 10
           +VSDG S+PY
Sbjct: 337 MVSDGGSKPY 346


>sp|NUOD_ACIC1|NADH-QUINONE oxidoreductase subunit D|Acidothermus cellulolyticus (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG ++PY
Sbjct: 388 LVSDGGTKPY 397


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374


>sp|NUOD_DEHMB|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+ +PY
Sbjct: 315 LVSDGTDKPY 324


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   LVSDGSSRPY 10
           LVSDG ++PY
Sbjct: 340 LVSDGGNKPY 349


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374


>sp|NUOD1_STRAW|NADH-QUINONE oxidoreductase subunit D 1|Streptomyces avermitilis (strain ATCC

Query: 2   VSDGSSRPY 10
           VSDG +RPY
Sbjct: 392 VSDGGTRPY 400


>sp|NUOD2_SOLUE|NADH-QUINONE oxidoreductase subunit D 2|Solibacter usitatus (strain Ellin6076)

Query: 2   VSDGSSRPY 10
           VSDGS++PY
Sbjct: 319 VSDGSTQPY 327


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 341 IVSDGTNKPY 350


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 341 IVSDGTNKPY 350


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 MVSDGANKPY 374


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 MVSDGANKPY 374


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 MVSDGANKPY 374


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 MVSDGANKPY 374


>sp|NUOD2_KORVE|NADH-QUINONE oxidoreductase subunit D 2|Koribacter versatilis (strain Ellin345)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 349 IVSDGTAKPY 358


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 341 IVSDGTNKPY 350


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 IVSDGANKPY 374


>sp|NUOD_DEHM1|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 1   LVSDGSSRPY 10
           LVSDG+ +PY
Sbjct: 315 LVSDGTDKPY 324


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 MVSDGANKPY 374


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 MVSDGANKPY 374


>sp|NUOD1_SORC5|NADH-QUINONE oxidoreductase subunit D 1|Sorangium cellulosum (strain So ce56)

Query: 1   LVSDGSSRPY 10
           LVSDGS  PY
Sbjct: 352 LVSDGSGTPY 361


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 IVSDGANKPY 374


>sp|NUOD2_SYMTH|NADH-QUINONE oxidoreductase subunit D 2|Symbiobacterium thermophilum (strain DSM

Query: 1   LVSDGSSRPY 10
           +VSDGS+ PY
Sbjct: 332 VVSDGSTNPY 341


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 IVSDGANKPY 374


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 341 IVSDGTNKPY 350


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 MVSDGANKPY 374


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 IVSDGANKPY 374


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 IVSDGANKPY 374


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 IVSDGANKPY 374


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 IVSDGANKPY 374


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   LVSDGSSRPY 10
           +VSDG+++PY
Sbjct: 365 IVSDGANKPY 374


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   LVSDGSSRPY 10
           L+SDG+++PY
Sbjct: 365 LISDGANKPY 374




84|Sequence|416|425|SSRPYRCKIK

>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   SSRPYRCKIK 10
           S+RPYRCKI+
Sbjct: 359 SNRPYRCKIR 368


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   SSRPYRCKIK 10
           S+RPYRCKI+
Sbjct: 353 SNRPYRCKIR 362


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   SSRPYRCKIK 10
           S+RPYRCKI+
Sbjct: 369 SNRPYRCKIR 378


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   SSRPYRCKIK 10
           ++RPYRCKI+
Sbjct: 351 TNRPYRCKIR 360


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   SSRPYRCKIK 10
           ++RPYRCKI+
Sbjct: 345 TNRPYRCKIR 354


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   SSRPYRCKIK 10
           S++PYRCKI+
Sbjct: 349 SNKPYRCKIR 358


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   SSRPYRCKIK 10
           S++PYRCKI+
Sbjct: 349 SNKPYRCKIR 358


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   SSRPYRCKIK 10
           S++PYRCKI+
Sbjct: 349 SNKPYRCKIR 358


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   SSRPYRCKIK 10
           S++PYRCKI+
Sbjct: 349 SNKPYRCKIR 358


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 2   SRPYRCKIK 10
           +RPYRC+IK
Sbjct: 345 NRPYRCRIK 353


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 2   SRPYRCKIK 10
           +RPYRC+IK
Sbjct: 345 NRPYRCRIK 353


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 2   SRPYRCKIK 10
           +RPYRC+IK
Sbjct: 345 NRPYRCRIK 353


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 2   SRPYRCKIK 10
           +RPYRC+IK
Sbjct: 345 NRPYRCRIK 353


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 2   SRPYRCKIK 10
           +RPYRC+IK
Sbjct: 345 NRPYRCRIK 353


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   SSRPYRCKIK 10
           S++PYRCKI+
Sbjct: 359 SNKPYRCKIR 368


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   SSRPYRCKIK 10
           S++PYRCKI+
Sbjct: 356 SNKPYRCKIR 365


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 2   SRPYRCKIK 10
           +RPYRC+IK
Sbjct: 345 NRPYRCRIK 353


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 2   SRPYRCKIK 10
           +RPYRC+IK
Sbjct: 345 NRPYRCRIK 353


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   SSRPYRCKIK 10
           +++PYRCKIK
Sbjct: 369 TNKPYRCKIK 378


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   SSRPYRCKIK 10
           ++RPYRC+IK
Sbjct: 349 TNRPYRCRIK 358


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   SSRPYRCKIK 10
           ++RPYRC+IK
Sbjct: 349 TNRPYRCRIK 358


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   SSRPYRCKIK 10
           S++PYRCK++
Sbjct: 349 SNKPYRCKLR 358


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   SSRPYRCKIK 10
           S++PYRCK++
Sbjct: 349 SNKPYRCKLR 358


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   SSRPYRCKIK 10
           S++PYRCK++
Sbjct: 349 SNKPYRCKLR 358


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   SSRPYRCKIK 10
           S++PYRCK++
Sbjct: 349 SNKPYRCKLR 358


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   SSRPYRCKIK 10
           S++PYRCK++
Sbjct: 349 SNKPYRCKLR 358


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   SSRPYRCKIK 10
           S++PYRCK++
Sbjct: 349 SNKPYRCKLR 358


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 349 TNKPYRCKIR 358


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 349 TNKPYRCKIR 358


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 356 TNKPYRCKIR 365


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 349 TNKPYRCKIR 358


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 349 TNKPYRCKIR 358


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 358 TNKPYRCKIR 367


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   SSRPYRCKIK 10
           ++RPYRC+I+
Sbjct: 343 TNRPYRCRIR 352


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 349 TNKPYRCKIR 358


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   SSRPYRCKIK 10
           ++RPYRC+I+
Sbjct: 343 TNRPYRCRIR 352


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   SSRPYRCKIK 10
           ++RPYRC+I+
Sbjct: 343 TNRPYRCRIR 352


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 349 TNKPYRCKIR 358


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 355 TNKPYRCKIR 364


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 355 TNKPYRCKIR 364


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   SSRPYRCKIK 10
           S++PY+CKI+
Sbjct: 355 SNKPYKCKIR 364


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   SSRPYRCKIK 10
           S++PY+CKI+
Sbjct: 355 SNKPYKCKIR 364


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   SSRPYRCKIK 10
           S++PY+CKI+
Sbjct: 351 SNKPYKCKIR 360


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   SSRPYRCKIK 10
           + +PYRCKI+
Sbjct: 345 TGKPYRCKIR 354


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   SSRPYRCKIK 10
           S++PY+CKI+
Sbjct: 355 SNKPYKCKIR 364


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 349 TNKPYRCKIR 358


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   SSRPYRCKIK 10
           S++PY+CKI+
Sbjct: 355 SNKPYKCKIR 364


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   SSRPYRCKIK 10
           +S+PY+CKI+
Sbjct: 344 TSKPYKCKIR 353


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   SSRPYRCKIK 10
           S++PY+CKI+
Sbjct: 349 SNKPYKCKIR 358


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 2   SRPYRCKIK 10
           ++PYRC+IK
Sbjct: 343 NKPYRCRIK 351


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   SSRPYRCKIK 10
           S++PY+CKI+
Sbjct: 369 SNKPYKCKIR 378


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 351 TNKPYRCKIR 360


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   SSRPYRCKIK 10
           ++RPYRC+I+
Sbjct: 351 TNRPYRCRIR 360


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 2   SRPYRCKIK 10
           ++PYRC+IK
Sbjct: 343 NKPYRCRIK 351


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   SSRPYRCKIK 10
           +++PYRCKI+
Sbjct: 364 TNKPYRCKIR 373


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   SSRPYRCKIK 10
           +++PYRC+IK
Sbjct: 344 NNQPYRCRIK 353


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   SSRPYRCKIK 10
           + +PYRCKI+
Sbjct: 349 TDKPYRCKIR 358


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   SSRPYRCKIK 10
           +++PYRCK++
Sbjct: 349 TNKPYRCKLR 358


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   SSRPYRCKIK 10
           +++PYRCK++
Sbjct: 349 TNKPYRCKLR 358


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   SSRPYRCKIK 10
           +++PYRC+I+
Sbjct: 341 TNKPYRCRIR 350


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   SSRPYRCKIK 10
           +++PY+CKI+
Sbjct: 349 TNKPYKCKIR 358


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   SSRPYRCKIK 10
           +++PY+CKI+
Sbjct: 351 TNKPYKCKIR 360


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   SSRPYRCKIK 10
           +++PY+CKI+
Sbjct: 358 TNKPYKCKIR 367


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   SSRPYRCKIK 10
           S+ PYRCKI+
Sbjct: 349 SNIPYRCKIR 358


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   SSRPYRCKIK 10
           +++PY+CKI+
Sbjct: 351 TNKPYKCKIR 360


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   SSRPYRCKIK 10
           +++PYRC+I+
Sbjct: 346 TNKPYRCRIR 355


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   SSRPYRCKIK 10
           +++PYRC+I+
Sbjct: 346 TNKPYRCRIR 355


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   SSRPYRCKIK 10
           +++PYRC+I+
Sbjct: 346 TNKPYRCRIR 355


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   SSRPYRCKIK 10
           +++PYRC+I+
Sbjct: 346 TNKPYRCRIR 355


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   SSRPYRCKIK 10
           +++PYRC+I+
Sbjct: 348 TNKPYRCRIR 357




85|Sequence|421|430|RCKIKAPGFA

>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 347 RCRIKAPGFA 356


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 349 RCRIKAPGFA 358


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 349 RCRIKAPGFA 358


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 347 RCRIKAPGFA 356


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 349 RCRIKAPGFA 358


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 349 RCRIKAPGFA 358


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 349 RCRIKAPGFA 358


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 349 RCRIKAPGFA 358


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 349 RCRIKAPGFA 358


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 354 RCRIKAPGFA 363


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   RCKIKAPGFA 10
           RC+IKAPGFA
Sbjct: 354 RCRIKAPGFA 363


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   RCKIKAPGFA 10
           RCKI+APGFA
Sbjct: 354 RCKIRAPGFA 363


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   RCKIKAPGFA 10
           RCKI+APGFA
Sbjct: 354 RCKIRAPGFA 363


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   RCKIKAPGFA 10
           RCKI+APGFA
Sbjct: 354 RCKIRAPGFA 363


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   RCKIKAPGFA 10
           RCKI+APGFA
Sbjct: 360 RCKIRAPGFA 369


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   RCKIKAPGFA 10
           RCKI+APGFA
Sbjct: 354 RCKIRAPGFA 363


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   RCKIKAPGFA 10
           RCKI+APGFA
Sbjct: 354 RCKIRAPGFA 363


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   RCKIKAPGFA 10
           RCKI+APGFA
Sbjct: 360 RCKIRAPGFA 369


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   RCKIKAPGFA 10
           RCKIKAPGF+
Sbjct: 374 RCKIKAPGFS 383


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   RCKIKAPGFA 10
           RC+I+APGFA
Sbjct: 348 RCRIRAPGFA 357


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   RCKIKAPGFA 10
           RC+I+APGFA
Sbjct: 348 RCRIRAPGFA 357


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   RCKIKAPGFA 10
           RC+I+APGFA
Sbjct: 351 RCRIRAPGFA 360


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   RCKIKAPGFA 10
           RC+I+APGFA
Sbjct: 348 RCRIRAPGFA 357


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   RCKIKAPGFA 10
           RCK++APGFA
Sbjct: 354 RCKLRAPGFA 363


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   RCKIKAPGFA 10
           RCK++APGFA
Sbjct: 354 RCKLRAPGFA 363


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   RCKIKAPGFA 10
           RCK++APGFA
Sbjct: 354 RCKLRAPGFA 363


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   RCKIKAPGFA 10
           RCK++APGFA
Sbjct: 354 RCKLRAPGFA 363


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   RCKIKAPGFA 10
           RCK++APGFA
Sbjct: 354 RCKLRAPGFA 363


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   RCKIKAPGFA 10
           RCK++APGFA
Sbjct: 354 RCKLRAPGFA 363


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   RCKIKAPGFA 10
           RCK++APGFA
Sbjct: 354 RCKLRAPGFA 363


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   RCKIKAPGFA 10
           RC+IK+PGFA
Sbjct: 349 RCRIKSPGFA 358


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   RCKIKAPGFA 10
           RC+I+APGFA
Sbjct: 351 RCRIRAPGFA 360


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   RCKIKAPGFA 10
           RCK++APGFA
Sbjct: 354 RCKLRAPGFA 363


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   RCKIKAPGFA 10
           RC+I+APGFA
Sbjct: 351 RCRIRAPGFA 360


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   RCKIKAPGFA 10
           RC+I+APGFA
Sbjct: 356 RCRIRAPGFA 365


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   RCKIKAPGFA 10
           RCKI+APG+A
Sbjct: 354 RCKIRAPGYA 363


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   RCKIKAPGFA 10
           RCKI+APG+A
Sbjct: 354 RCKIRAPGYA 363


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   RCKIKAPGFA 10
           RCKI+APG+A
Sbjct: 354 RCKIRAPGYA 363


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   RCKIKAPGFA 10
           RCKI+APG+A
Sbjct: 354 RCKIRAPGYA 363


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   RCKIKAPGFA 10
           RCKI+APG+A
Sbjct: 354 RCKIRAPGYA 363


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   RCKIKAPGFA 10
           RCKI+APG+A
Sbjct: 354 RCKIRAPGYA 363


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   RCKIKAPGFA 10
           RCKI+APG+A
Sbjct: 354 RCKIRAPGYA 363


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   RCKIKAPGFA 10
           RC+I+APGFA
Sbjct: 351 RCRIRAPGFA 360


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 356 KCKIRAPGFA 365


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 360 KCKIRAPGFA 369


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 360 KCKIRAPGFA 369


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 356 KCKIRAPGFA 365


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   RCKIKAPGFA 10
           RC+IK PGFA
Sbjct: 349 RCRIKTPGFA 358


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 354 KCKIRAPGFA 363


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 374 KCKIRAPGFA 383


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 356 KCKIRAPGFA 365


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 363 KCKIRAPGFA 372


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 360 KCKIRAPGFA 369


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 354 KCKIRAPGFA 363


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   RCKIKAPGF 9
           RCKI+APGF
Sbjct: 356 RCKIRAPGF 364


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   RCKIKAPGFA 10
           +CKI+APGFA
Sbjct: 360 KCKIRAPGFA 369


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   RCKIKAPGFA 10
           +CK++APGFA
Sbjct: 359 KCKVRAPGFA 368


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   RCKIKAPGFA 10
           RC+I++PGFA
Sbjct: 353 RCRIRSPGFA 362


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   RCKIKAPGFA 10
           RCKI+AP FA
Sbjct: 354 RCKIRAPSFA 363


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   RCKIKAPGF 9
           RC+I+APGF
Sbjct: 346 RCRIRAPGF 354


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   RCKIKAPGFA 10
           +CKI+APGF+
Sbjct: 349 KCKIRAPGFS 358


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   RCKIKAPGFA 10
           +CKI+APG+A
Sbjct: 350 KCKIRAPGYA 359


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   RCKIKAPGF 9
           RCKI+APG+
Sbjct: 369 RCKIRAPGY 377


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RVKIRAPGFA 384


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   RCKIKAPGFA 10
           +CKI+AP FA
Sbjct: 354 KCKIRAPSFA 363


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   RCKIKAPGF 9
           RCKI++PG+
Sbjct: 350 RCKIRSPGY 358


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 360 RLKIRAPGFA 369


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 376 RLKIRAPGFA 385


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RLKIRAPGFA 384


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RMKIRAPGFA 384


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   RCKIKAPGFA 10
           R KI+APGFA
Sbjct: 375 RMKIRAPGFA 384


>sp|NUOD1_CYTH3|NADH-QUINONE oxidoreductase subunit D 1|Cytophaga hutchinsonii (strain ATCC

Query: 1   RCKIKAPGF 9
           RCK++AP F
Sbjct: 350 RCKVRAPSF 358


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   RCKIKAPGFA 10
           RCKI+A GF+
Sbjct: 364 RCKIRATGFS 373


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 375 RLKVRAPGFA 384


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 375 RLKVRAPGFA 384


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 370 RAKLRAPGFA 379


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 370 RAKLRAPGFA 379


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 370 RAKLRAPGFA 379


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   RCKIKAPGF 9
           RCKI+ PG+
Sbjct: 350 RCKIRPPGY 358


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 354 RVKLRAPGFA 363


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 354 RVKLRAPGFA 363


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 354 RVKLRAPGFA 363


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 354 RVKLRAPGFA 363


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 375 RVKLRAPGFA 384


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   RCKIKAPGFA 10
           R KI+APG+A
Sbjct: 371 RAKIRAPGYA 380


>sp|CH60_BORT9|CHAPERONIN GroEL|Borrelia turicatae (strain 91E135)

Query: 2   CKIKAPGFA 10
           C IKAPGF 
Sbjct: 273 CAIKAPGFG 281


>sp|CH60_BORRA|CHAPERONIN GroEL|Borrelia recurrentis (strain A1)

Query: 2   CKIKAPGFA 10
           C IKAPGF 
Sbjct: 273 CAIKAPGFG 281


>sp|CH60_BORDL|CHAPERONIN GroEL|Borrelia duttonii (strain Ly)

Query: 2   CKIKAPGFA 10
           C IKAPGF 
Sbjct: 273 CAIKAPGFG 281


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 375 RLKLRAPGFA 384


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   RCKIKAPGFA 10
           R K++APGFA
Sbjct: 375 RLKLRAPGFA 384


>sp|CH60_AROAE|CHAPERONIN GroEL|Aromatoleum aromaticum (strain DSM 19018

Query: 2   CKIKAPGFA 10
           C +KAPGF 
Sbjct: 274 CSVKAPGFG 282




86|Sequence|426|435|APGFAHLAGL

>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   APGFAHLAGL 10
           APGF HLAGL
Sbjct: 380 APGFVHLAGL 389


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 352 APGFAHLQGL 361


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 352 APGFAHLQGL 361


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 359 APGFAHLQGL 368


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 359 APGFAHLQGL 368


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 354 APGFAHLQGL 363


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 354 APGFAHLQGL 363


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 354 APGFAHLQGL 363


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 354 APGFAHLQGL 363


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 354 APGFAHLQGL 363


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 354 APGFAHLQGL 363


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   APGFAHLAGL 10
           APGFAHL GL
Sbjct: 354 APGFAHLQGL 363


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLAAL 389


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLASL 389


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLAAL 389


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLAAL 389


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLAAL 389


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLAAL 389


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   APGFAHLAGL 10
           APGFAHL G+
Sbjct: 381 APGFAHLQGM 390


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   APGFAHLAGL 10
           APGFAHL G+
Sbjct: 381 APGFAHLQGM 390


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   APGFAHLAGL 10
           APGFAHL G+
Sbjct: 381 APGFAHLQGM 390


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   APGFAHLAGL 10
           APGFAHL G+
Sbjct: 381 APGFAHLQGM 390


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   APGFAHLAGL 10
           APGFAHLA +
Sbjct: 380 APGFAHLAAM 389


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLASL 389


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   APGFAHLAGL 10
           APGFAHLA +
Sbjct: 380 APGFAHLAAM 389


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   APGFAHLAGL 10
           APGFAHLA +
Sbjct: 380 APGFAHLAAM 389


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLASL 389


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLASL 389


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLASL 389


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLASL 389


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLASL 389


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   APGFAHLAGL 10
           APGFAHLA +
Sbjct: 380 APGFAHLAAM 389


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLATL 389


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   APGFAHLAGL 10
           APGFAHL G+
Sbjct: 381 APGFAHLQGM 390


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   APGFAHLAGL 10
           APGFAHL G+
Sbjct: 381 APGFAHLQGM 390


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLASL 389


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLASL 389


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLASL 389


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   APGFAHLAGL 10
           +PGFAHL GL
Sbjct: 354 SPGFAHLQGL 363


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   APGFAHLAGL 10
           APGFAHLA +
Sbjct: 380 APGFAHLAAM 389


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   APGFAHLAGL 10
           APGFAHLA +
Sbjct: 365 APGFAHLAAM 374


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLATL 389


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 2   PGFAHLAGL 10
           PGFAHL GL
Sbjct: 355 PGFAHLQGL 363


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHLA +
Sbjct: 380 APGFAHLAAM 389


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   APGFAHLAGL 10
           APGFAHL+ L
Sbjct: 399 APGFAHLSSL 408


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   APGFAHLAGL 10
           APGF HLA L
Sbjct: 380 APGFVHLAAL 389


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   APGFAHLAGL 10
           APGF+HLA +
Sbjct: 380 APGFSHLAAM 389


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   APGFAHLAGL 10
           APG+AHLA L
Sbjct: 380 APGYAHLAAL 389


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   APGFAHLAGL 10
           APGF HL GL
Sbjct: 380 APGFPHLQGL 389


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   APGFAHLAGL 10
           APGF HLA L
Sbjct: 380 APGFVHLAAL 389


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   APGFAHLAGL 10
           APGF HL GL
Sbjct: 380 APGFPHLQGL 389


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 380 APGFAHLSAM 389


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   APGFAHLAGL 10
           APGFAHL  L
Sbjct: 353 APGFAHLQAL 362


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   APGFAHLAGL 10
           APGF HLA L
Sbjct: 380 APGFPHLAAL 389


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   APGFAHLAGL 10
           APGF HLA L
Sbjct: 380 APGFPHLAAL 389


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 359 APGFAHLSAM 368


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHL  L
Sbjct: 380 APGFAHLEAL 389


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   APGFAHLAGL 10
           APGFAHL  L
Sbjct: 353 APGFAHLQAL 362


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   APGFAHLAGL 10
           APGFAHL  L
Sbjct: 353 APGFAHLQAL 362


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSM 407


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   APGFAHLAGL 10
           APGFAHLA L
Sbjct: 380 APGFAHLATL 389


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   APGFAHLAGL 10
           APGF+HLA +
Sbjct: 379 APGFSHLAAM 388


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   APGFAHLAGL 10
           APGFAHL+  
Sbjct: 380 APGFAHLSSF 389


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   APGFAHLAGL 10
           APGFAHL+  
Sbjct: 380 APGFAHLSSF 389


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   APGFAHLAGL 10
           APGFAHL+  
Sbjct: 380 APGFAHLSSF 389


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   APGFAHLAGL 10
           APGFAHL+  
Sbjct: 380 APGFAHLSSF 389


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   APGFAHLAGL 10
           APGFAHL  L
Sbjct: 381 APGFAHLQSL 390


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   APGFAHLAGL 10
           APG+AHL+ L
Sbjct: 380 APGYAHLSAL 389


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   APGFAHLAGL 10
           APG+AHL+ L
Sbjct: 380 APGYAHLSAL 389


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   APGFAHLAGL 10
           APG+AHL+ L
Sbjct: 380 APGYAHLSAL 389


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   APGFAHLAGL 10
           APG+AHL+ L
Sbjct: 380 APGYAHLSAL 389


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   APGFAHLAGL 10
           APG+AHL+ L
Sbjct: 380 APGYAHLSAL 389


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   APGFAHLAGL 10
           APG+AHL+ L
Sbjct: 380 APGYAHLSAL 389


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   APGFAHLAGL 10
           APG+AHL+ L
Sbjct: 380 APGYAHLSAL 389


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   APGFAHLAGL 10
           APG+AHL+ L
Sbjct: 380 APGYAHLSAL 389


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   APGFAHLAGL 10
           APG+AHL+ L
Sbjct: 380 APGYAHLSAL 389


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 356 APGFAHLQAI 365


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 356 APGFAHLQAI 365


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   APGFAHLAGL 10
           APGFAHL  L
Sbjct: 381 APGFAHLQSL 390


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   APGFAHLAGL 10
           APG+AHL+ L
Sbjct: 380 APGYAHLSAL 389


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   APGFAHLAGL 10
           APGFAHL  L
Sbjct: 381 APGFAHLQSL 390


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSI 407


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   APGFAHLAGL 10
           APGFAHL  L
Sbjct: 381 APGFAHLQSL 390


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHL  L
Sbjct: 381 APGFAHLQSL 390


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 375 APGFAHLQAM 384


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 356 APGFAHLQAI 365


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 356 APGFAHLQAI 365


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   APGFAHLAGL 10
           APGF HLA +
Sbjct: 361 APGFPHLAAM 370


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 364 APGFAHLQAM 373


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   APGFAHLAGL 10
           APGFAH++ +
Sbjct: 380 APGFAHISAM 389


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   APGFAHLAGL 10
           APGFAH++ +
Sbjct: 380 APGFAHISAM 389


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   APGFAHLAGL 10
           APGFAH++ +
Sbjct: 380 APGFAHISAM 389


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   APGFAHLAGL 10
           APGFAH++ +
Sbjct: 380 APGFAHISAM 389


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   APGFAHLAGL 10
           APGFAH++ +
Sbjct: 380 APGFAHISAM 389


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   APGFAHLAGL 10
           APGFAH++ +
Sbjct: 380 APGFAHISAM 389


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   APGFAHLAGL 10
           APGFAH++ +
Sbjct: 380 APGFAHISAM 389


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   APGFAHLAGL 10
           APGFAHL+ +
Sbjct: 398 APGFAHLSSI 407


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   APGFAHLAGL 10
           APGFAH++ +
Sbjct: 380 APGFAHISAM 389


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   APGFAHLAGL 10
           APGF HLA +
Sbjct: 380 APGFPHLAAM 389


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 379 APGFAHLQAM 388


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 361 APGFAHLQAM 370


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 361 APGFAHLQAM 370


>sp|PROA_BARBK|GAMMA-GLUTAMYL phosphate reductase|Bartonella bacilliformis (strain ATCC 35685

Query: 2   PGFAHLAGL 10
           P FAHLAGL
Sbjct: 216 PVFAHLAGL 224


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 361 APGFAHLQAI 370


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 368 APGFAHLQAM 377


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 361 APGFAHLQAM 370


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 365 APGFAHLQAM 374


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 375 APGFAHLQSI 384


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 375 APGFAHLQSI 384


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 365 APGFAHLQAM 374


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 359 APGFAHLQAM 368


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 365 APGFAHLQAM 374


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   APGFAHLAGL 10
           APGFAHL  +
Sbjct: 365 APGFAHLQAM 374




87|Sequence|431|440|HLAGLDKMSK

>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   HLAGLDKMSK 10
           HLAGLD+MS+
Sbjct: 385 HLAGLDEMSR 394




88|Sequence|436|445|DKMSKGHMLA

>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   DKMSKGHMLA 10
           D MSKGHMLA
Sbjct: 365 DMMSKGHMLA 374


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   DKMSKGHMLA 10
           D MSKGHMLA
Sbjct: 378 DMMSKGHMLA 387


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   DKMSKGHMLA 10
           D MSKGHMLA
Sbjct: 371 DFMSKGHMLA 380


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   DKMSKGHMLA 10
           D MSKGHMLA
Sbjct: 375 DYMSKGHMLA 384


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   DKMSKGHMLA 10
           D+MS+GHMLA
Sbjct: 390 DEMSRGHMLA 399


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   DKMSKGHMLA 10
           D+M+KGHMLA
Sbjct: 391 DEMAKGHMLA 400


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   DKMSKGHMLA 10
           D+M+KGHMLA
Sbjct: 391 DEMAKGHMLA 400


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   DKMSKGHMLA 10
           D+M+KGHMLA
Sbjct: 391 DEMAKGHMLA 400


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   DKMSKGHMLA 10
           D+MS+GHMLA
Sbjct: 390 DEMSRGHMLA 399


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   DKMSKGHMLA 10
           D+M+KGHMLA
Sbjct: 391 DEMAKGHMLA 400


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   DKMSKGHMLA 10
           D+M+KGHMLA
Sbjct: 391 DEMAKGHMLA 400


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   DKMSKGHMLA 10
           D+M+KGHMLA
Sbjct: 391 DEMAKGHMLA 400


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   DKMSKGHMLA 10
           D M+KGHMLA
Sbjct: 366 DMMAKGHMLA 375


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   DKMSKGHMLA 10
           D+MS+GHM+A
Sbjct: 390 DEMSRGHMIA 399


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   DKMSKGHMLA 10
           D M+KGHMLA
Sbjct: 366 DMMAKGHMLA 375


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   DKMSKGHMLA 10
           D+MS+GHM+A
Sbjct: 390 DEMSRGHMIA 399


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   DKMSKGHMLA 10
           D M+KGHMLA
Sbjct: 366 DMMAKGHMLA 375


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   DKMSKGHMLA 10
           D+MS+GHM+A
Sbjct: 390 DEMSRGHMIA 399


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   DKMSKGHMLA 10
           D+MS+GHM+A
Sbjct: 390 DEMSRGHMIA 399


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   DKMSKGHMLA 10
           D M++GHMLA
Sbjct: 368 DAMARGHMLA 377


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   DKMSKGHMLA 10
           D MS+GHMLA
Sbjct: 365 DLMSRGHMLA 374


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   DKMSKGHMLA 10
           D M++GHMLA
Sbjct: 371 DAMARGHMLA 380


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   DKMSKGHMLA 10
           D+MS+GHM+A
Sbjct: 390 DEMSRGHMIA 399


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   DKMSKGHMLA 10
           D+MS+GHM+A
Sbjct: 390 DEMSRGHMIA 399


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   DKMSKGHMLA 10
           D+M+KGHM+A
Sbjct: 390 DEMTKGHMIA 399


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   DKMSKGHMLA 10
           D+M+KGHM+A
Sbjct: 390 DEMAKGHMIA 399


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   DKMSKGHMLA 10
           D MS+GHMLA
Sbjct: 385 DWMSRGHMLA 394


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   DKMSKGHMLA 10
           D+MS+GHM+A
Sbjct: 390 DEMSRGHMIA 399


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   DKMSKGHMLA 10
           D M+KGHMLA
Sbjct: 363 DFMAKGHMLA 372


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   DKMSKGHMLA 10
           D+MS+GHM+A
Sbjct: 391 DEMSRGHMIA 400


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   DKMSKGHMLA 10
           D+M++GHMLA
Sbjct: 390 DEMARGHMLA 399


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   DKMSKGHMLA 10
           D MS+GHMLA
Sbjct: 385 DWMSRGHMLA 394


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   DKMSKGHMLA 10
           D+M+KGHM+A
Sbjct: 390 DEMAKGHMIA 399


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   DKMSKGHMLA 10
           D+M+KGHM+A
Sbjct: 390 DEMAKGHMIA 399


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   DKMSKGHMLA 10
           D+M+KGHM+A
Sbjct: 390 DEMAKGHMIA 399


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   DKMSKGHMLA 10
           D+M++GHMLA
Sbjct: 390 DEMARGHMLA 399


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   DKMSKGHMLA 10
           D M+KGHMLA
Sbjct: 363 DFMAKGHMLA 372


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   DKMSKGHMLA 10
           D+M+KGHM+A
Sbjct: 390 DEMAKGHMIA 399


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   DKMSKGHMLA 10
           D+M+KGHM+A
Sbjct: 390 DEMAKGHMIA 399


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   DKMSKGHMLA 10
           D M+KGHMLA
Sbjct: 363 DFMAKGHMLA 372


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   DKMSKGHMLA 10
           D+M+KGHM+A
Sbjct: 390 DEMAKGHMIA 399


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMTRGHMIA 399


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   DKMSKGHML 9
           D MSKGHML
Sbjct: 376 DFMSKGHML 384


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 391 DEMARGHMIA 400


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   DKMSKGHMLA 10
           D+M++GHM+A
Sbjct: 390 DEMARGHMIA 399




89|Sequence|441|450|GHMLADVVAI

>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   GHMLADVVAI 10
           GHMLADVVAI
Sbjct: 395 GHMLADVVAI 404


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   GHMLADVVAI 10
           GHMLADVVAI
Sbjct: 395 GHMLADVVAI 404


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   GHMLADVVAI 10
           GHMLADVVAI
Sbjct: 396 GHMLADVVAI 405


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   GHMLADVVAI 10
           GHMLADVVAI
Sbjct: 396 GHMLADVVAI 405


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   GHMLADVVAI 10
           GHMLADVVAI
Sbjct: 396 GHMLADVVAI 405


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   GHMLADVVAI 10
           GHMLADVVAI
Sbjct: 396 GHMLADVVAI 405


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   GHMLADVVAI 10
           GHMLADVVAI
Sbjct: 396 GHMLADVVAI 405


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   GHMLADVVAI 10
           GHMLADVVAI
Sbjct: 396 GHMLADVVAI 405


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   GHMLADVVAI 10
           GHM+ADVVAI
Sbjct: 395 GHMIADVVAI 404


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   GHMLADVVAI 10
           GHM+ADVVAI
Sbjct: 395 GHMIADVVAI 404


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   GHMLADVVAI 10
           GHMLADVVA+
Sbjct: 414 GHMLADVVAM 423


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   GHMLADVVAI 10
           GHM+ADVVAI
Sbjct: 395 GHMIADVVAI 404


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   GHMLADVVAI 10
           GHM+ADVVAI
Sbjct: 395 GHMIADVVAI 404


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   GHMLADVVAI 10
           GHMLAD VAI
Sbjct: 376 GHMLADTVAI 385


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   GHMLADVVAI 10
           GHM+ADVVAI
Sbjct: 395 GHMIADVVAI 404


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   GHMLADVVAI 10
           GHMLADVVA+
Sbjct: 413 GHMLADVVAM 422


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   GHMLADVVAI 10
           GHMLADVVA+
Sbjct: 413 GHMLADVVAM 422


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 368 GHMLADVAAI 377


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   GHMLADVVA 9
           GHMLADVVA
Sbjct: 370 GHMLADVVA 378


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 368 GHMLADVAAI 377


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   GHMLADVVAI 10
           GHMLAD VAI
Sbjct: 395 GHMLADAVAI 404


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 1   GHMLADVVAI 10
           GH+LADV+AI
Sbjct: 379 GHLLADVIAI 388


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 389 GHMLADVSAI 398


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   GHMLADVVA 9
           GHMLADVVA
Sbjct: 370 GHMLADVVA 378


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   GHMLADVVAI 10
           GHMLAD+ AI
Sbjct: 368 GHMLADIAAI 377


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   GHMLADVVAI 10
           GHM+AD+VAI
Sbjct: 395 GHMIADLVAI 404


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   GHMLADVVAI 10
           GHM+AD+VAI
Sbjct: 395 GHMIADLVAI 404


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   GHMLADVVAI 10
           GHM+AD+VAI
Sbjct: 395 GHMIADLVAI 404


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   GHMLADVVAI 10
           GHM+AD+VAI
Sbjct: 395 GHMIADLVAI 404


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   GHMLADVVAI 10
           GHM+AD+VAI
Sbjct: 395 GHMIADLVAI 404


>sp|NUOD_METI4|NADH-QUINONE oxidoreductase subunit D|Methylacidiphilum infernorum (isolate V4)

Query: 1   GHMLADVVAI 10
           GH+L+DVVAI
Sbjct: 396 GHLLSDVVAI 405


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   GHMLADVVAI 10
           GHM+ADVVAI
Sbjct: 395 GHMIADVVAI 404


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   GHMLADVVAI 10
           GHM+ADVVAI
Sbjct: 395 GHMIADVVAI 404


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 374 GHMLADVSAI 383


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   GHMLADVVAI 10
           GHM+AD+VAI
Sbjct: 395 GHMIADLVAI 404


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 374 GHMLADVSAI 383


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   GHMLADVVAI 10
           GHMLAD+ AI
Sbjct: 371 GHMLADLTAI 380


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 390 GHMLADVPAI 399


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 374 GHMLADVSAI 383


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 374 GHMLADVSAI 383


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 374 GHMLADVSAI 383


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 390 GHMLADVPAI 399


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   GHMLADVVAI 10
           GHML+DVV I
Sbjct: 395 GHMLSDVVTI 404


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 374 GHMLADVSAI 383


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 374 GHMLADVSAI 383


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 374 GHMLADVSAI 383


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 374 GHMLADVSAI 383


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 374 GHMLADVSAI 383


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   GHMLADVVAI 10
           GHMLAD+ AI
Sbjct: 376 GHMLADLTAI 385


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   GHMLADVVAI 10
           GHMLAD VAI
Sbjct: 395 GHMLADGVAI 404


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   GHMLADVVAI 10
           GHMLAD VAI
Sbjct: 395 GHMLADGVAI 404


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   GHMLADVVAI 10
           GHMLAD VAI
Sbjct: 395 GHMLADGVAI 404


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   GHMLADVVAI 10
           GHMLAD VAI
Sbjct: 395 GHMLADGVAI 404


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 380 GHMLADVSAI 389


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   GHMLADVVAI 10
           GHM+AD VAI
Sbjct: 395 GHMIADAVAI 404


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   GHMLADVVAI 10
           GHMLADV AI
Sbjct: 370 GHMLADVSAI 379


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   GHMLADVVAI 10
           GHMLAD+ AI
Sbjct: 371 GHMLADLTAI 380


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   GHMLADVVAI 10
           GHMLAD+ AI
Sbjct: 371 GHMLADLTAI 380


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   GHMLADVVAI 10
           GHMLAD+ AI
Sbjct: 371 GHMLADLTAI 380


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   GHMLADVVAI 10
           GHM+ADVV I
Sbjct: 395 GHMIADVVTI 404


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   GHMLADVVAI 10
           GHMLADV A+
Sbjct: 369 GHMLADVPAV 378


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   GHMLADVVAI 10
           GHML+DVV I
Sbjct: 395 GHMLSDVVTI 404


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   GHMLADVVAI 10
           GHM+AD VAI
Sbjct: 395 GHMIADAVAI 404


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   GHMLADVVAI 10
           GHMLADV A+
Sbjct: 380 GHMLADVSAV 389


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   GHMLADVVAI 10
           GHMLAD  AI
Sbjct: 374 GHMLADATAI 383


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   GHMLADVVAI 10
           GHMLAD  AI
Sbjct: 374 GHMLADATAI 383


>sp|NUOD_RHIWR|NADH-QUINONE oxidoreductase subunit D|Rhizorhabdus wittichii (strain DSM 6014

Query: 1   GHMLADVVAI 10
           GHMLAD  AI
Sbjct: 384 GHMLADTTAI 393


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   GHMLADVVAI 10
           GHMLAD  AI
Sbjct: 374 GHMLADATAI 383


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   GHMLADVVAI 10
           GHM+AD+VAI
Sbjct: 395 GHMIADLVAI 404


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   GHMLADVVAI 10
           GH+LADV AI
Sbjct: 380 GHLLADVSAI 389


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   GHMLADVVAI 10
           GHM+AD+VAI
Sbjct: 395 GHMIADLVAI 404


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   GHMLADVVAI 10
           GHM+AD VA+
Sbjct: 395 GHMIADAVAV 404


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   GHMLADVVAI 10
           GHMLAD  AI
Sbjct: 383 GHMLADTTAI 392


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   GHMLADVVAI 10
           GHM+AD VA+
Sbjct: 395 GHMIADAVAV 404


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   GHMLADVVAI 10
           GH+LADV AI
Sbjct: 380 GHLLADVSAI 389


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   GHMLADVVAI 10
           GH+LADV AI
Sbjct: 382 GHLLADVSAI 391


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   GHMLADVVAI 10
           GHMLAD  AI
Sbjct: 374 GHMLADATAI 383


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   GHMLADVVAI 10
           G+MLADVVA+
Sbjct: 413 GYMLADVVAM 422


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   GHMLADVVAI 10
           G+MLADVVA+
Sbjct: 413 GYMLADVVAM 422


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   GHMLADVVAI 10
           GHMLAD V I
Sbjct: 395 GHMLADAVTI 404


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   GHMLADVVAI 10
           G+MLADVVA+
Sbjct: 413 GYMLADVVAM 422


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   GHMLADVVAI 10
           G+MLADVVA+
Sbjct: 413 GYMLADVVAM 422


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   GHMLADVVAI 10
           GH+LADV AI
Sbjct: 379 GHLLADVSAI 388


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   GHMLADVVAI 10
           GHMLAD V I
Sbjct: 395 GHMLADAVTI 404


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   GHMLADVVAI 10
           GHMLADV A+
Sbjct: 380 GHMLADVSAV 389


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   GHMLADVVAI 10
           GH+LADV AI
Sbjct: 374 GHLLADVSAI 383


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   GHMLADVVAI 10
           GH+LADV AI
Sbjct: 394 GHLLADVSAI 403


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   GHMLADVVAI 10
           GH+LADV AI
Sbjct: 374 GHLLADVSAI 383


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   GHMLADVVAI 10
           GH+LADV AI
Sbjct: 376 GHLLADVSAI 385


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   GHMLADVVAI 10
           GH+LADV AI
Sbjct: 376 GHLLADVSAI 385


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   GHMLADVVAI 10
           GH+LADV AI
Sbjct: 383 GHLLADVSAI 392


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   GHMLADVVAI 10
           GHM+AD VAI
Sbjct: 395 GHMIADAVAI 404


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   GHMLADVVAI 10
           GH LADV AI
Sbjct: 381 GHQLADVAAI 390


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   GHMLADVVAI 10
           GH LADV AI
Sbjct: 382 GHQLADVAAI 391


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   GHMLADVVAI 10
           GH LADV AI
Sbjct: 383 GHQLADVAAI 392




90|Sequence|446|455|DVVAIIGTQD

>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 400 DVVAIIGTQD 409


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 400 DVVAIIGTQD 409


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 401 DVVAIIGTQD 410


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 401 DVVAIIGTQD 410


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 401 DVVAIIGTQD 410


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 400 DVVAIIGTQD 409


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 400 DVVAIIGTQD 409


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 400 DVVAIIGTQD 409


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 401 DVVAIIGTQD 410


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 401 DVVAIIGTQD 410


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   DVVAIIGTQD 10
           DVVAIIGTQD
Sbjct: 401 DVVAIIGTQD 410


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   DVVAIIGTQD 10
           D+VAIIGTQD
Sbjct: 400 DLVAIIGTQD 409


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   DVVAIIGTQD 10
           D+VAIIGTQD
Sbjct: 400 DLVAIIGTQD 409


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   DVVAIIGTQD 10
           DVV IIGTQD
Sbjct: 400 DVVTIIGTQD 409


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   DVVAIIGTQD 10
           DVV IIGTQD
Sbjct: 400 DVVTIIGTQD 409


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   DVVAIIGTQD 10
           D+VAIIGTQD
Sbjct: 400 DLVAIIGTQD 409


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   DVVAIIGTQD 10
           DVVAIIGT D
Sbjct: 400 DVVAIIGTMD 409


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   DVVAIIGTQD 10
           DVVAIIGT D
Sbjct: 400 DVVAIIGTMD 409


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   DVVAIIGTQD 10
           DVVAIIGT D
Sbjct: 400 DVVAIIGTMD 409


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   DVVAIIGTQD 10
           DVV IIG+QD
Sbjct: 400 DVVTIIGSQD 409


>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 401 DAVTIIGTQD 410


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 401 DAVTIIGTQD 410


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 401 DAVTIIGTQD 410


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 401 DAVTIIGTQD 410


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 401 DAVTIIGTQD 410


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   DVVAIIGTQD 10
           D V IIGTQD
Sbjct: 400 DAVTIIGTQD 409


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 1   DVVAIIGTQD 10
           DV+AIIGT D
Sbjct: 384 DVIAIIGTLD 393




91|Sequence|451|463|IGTQDIVFGEVDR

>sp|NUOD_PARP8|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phymatum (strain DSM

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGEVDR
Sbjct: 405 IGTQDIVFGEVDR 417


>sp|NUOD_PARPJ|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia phytofirmans (strain DSM

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGEVDR
Sbjct: 405 IGTQDIVFGEVDR 417


>sp|NUOD_PARXL|NADH-QUINONE oxidoreductase subunit D|Paraburkholderia xenovorans (strain LB400)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGEVDR
Sbjct: 405 IGTQDIVFGEVDR 417


>sp|NUOD_HYDCU|NADH-QUINONE oxidoreductase subunit D|Hydrogenovibrio crunogenus (strain DSM

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGEVDR
Sbjct: 405 IGTQDIVFGEVDR 417


>sp|NUOD_ALKEH|NADH-QUINONE oxidoreductase subunit D|Alkalilimnicola ehrlichii (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BORPE|NADH-QUINONE oxidoreductase subunit D|Bordetella pertussis (strain Tohama I

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 406 IGTQDIVFGEIDR 418


>sp|NUOD_NEIM0|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C (strain

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGEVDR
Sbjct: 406 IGTQDIVFGEVDR 418


>sp|NUOD_HERAR|NADH-QUINONE oxidoreductase subunit D|Herminiimonas arsenicoxydans

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BORPA|NADH-QUINONE oxidoreductase subunit D|Bordetella parapertussis (strain 12822 /

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 406 IGTQDIVFGEIDR 418


>sp|NUOD_BORBR|NADH-QUINONE oxidoreductase subunit D|Bordetella bronchiseptica (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 406 IGTQDIVFGEIDR 418


>sp|NUOD_BORA1|NADH-QUINONE oxidoreductase subunit D|Bordetella avium (strain 197N)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 406 IGTQDIVFGEIDR 418


>sp|NUOD_NEIMF|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup C /

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGEVDR
Sbjct: 406 IGTQDIVFGEVDR 418


>sp|NUOD_BORPD|NADH-QUINONE oxidoreductase subunit D|Bordetella petrii (strain ATCC BAA-461

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 406 IGTQDIVFGEIDR 418


>sp|NUOD_POLNS|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter necessarius subsp.

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_NEIMA|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup A /

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGEVDR
Sbjct: 406 IGTQDIVFGEVDR 418


>sp|NUOD_NEIG2|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain NCCP11945)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGEVDR
Sbjct: 406 IGTQDIVFGEVDR 418


>sp|NUOD_NEIG1|NADH-QUINONE oxidoreductase subunit D|Neisseria gonorrhoeae (strain ATCC 700825

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGEVDR
Sbjct: 406 IGTQDIVFGEVDR 418


>sp|NUOD_THIDA|NADH-QUINONE oxidoreductase subunit D|Thiobacillus denitrificans (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_JANMA|NADH-QUINONE oxidoreductase subunit D|Janthinobacterium sp. (strain Marseille)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_CUPPJ|NADH-QUINONE oxidoreductase subunit D|Cupriavidus pinatubonensis (strain JMP 134

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_CHRVO|NADH-QUINONE oxidoreductase subunit D|Chromobacterium violaceum (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_POLAQ|NADH-QUINONE oxidoreductase subunit D|Polynucleobacter asymbioticus (strain DSM

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_CUPNH|NADH-QUINONE oxidoreductase subunit D|Cupriavidus necator (strain ATCC 17699

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_CUPTR|NADH-QUINONE oxidoreductase subunit D|Cupriavidus taiwanensis (strain DSM 17343

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_NITMU|NADH-QUINONE oxidoreductase subunit D|Nitrosospira multiformis (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_NITEU|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas europaea (strain ATCC 19718

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_NEIMB|NADH-QUINONE oxidoreductase subunit D|Neisseria meningitidis serogroup B (strain

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGEVDR
Sbjct: 406 IGTQDIVFGEVDR 418


>sp|NUOD_CUPMC|NADH-QUINONE oxidoreductase subunit D|Cupriavidus metallidurans (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURM1|NADH-QUINONE oxidoreductase subunit D|Burkholderia multivorans (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURO0|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain MC0-3)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURL3|NADH-QUINONE oxidoreductase subunit D|Burkholderia lata (strain ATCC 17760

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_RALPJ|NADH-QUINONE oxidoreductase subunit D|Ralstonia pickettii (strain 12J)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_METFK|NADH-QUINONE oxidoreductase subunit D|Methylobacillus flagellatus (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURO1|NADH-QUINONE oxidoreductase subunit D|Burkholderia orbicola (strain AU 1054)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURCJ|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURCH|NADH-QUINONE oxidoreductase subunit D|Burkholderia cenocepacia (strain HI2424)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURPS|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain K96243)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURP6|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 668)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURP1|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1710b)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURP0|NADH-QUINONE oxidoreductase subunit D|Burkholderia pseudomallei (strain 1106a)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURMS|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain SAVP1)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURMA|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain ATCC 23344)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURM9|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10229)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURM7|NADH-QUINONE oxidoreductase subunit D|Burkholderia mallei (strain NCTC 10247)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURA4|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain MC40-6)

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURTA|NADH-QUINONE oxidoreductase subunit D|Burkholderia thailandensis (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURCM|NADH-QUINONE oxidoreductase subunit D|Burkholderia ambifaria (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_RUTMC|NADH-QUINONE oxidoreductase subunit D|Ruthia magnifica subsp. Calyptogena

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_NITEC|NADH-QUINONE oxidoreductase subunit D|Nitrosomonas eutropha (strain DSM 101675

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_BURVG|NADH-QUINONE oxidoreductase subunit D|Burkholderia vietnamiensis (strain G4 /

Query: 1   IGTQDIVFGEVDR 13
           IGTQDIVFGE+DR
Sbjct: 405 IGTQDIVFGEIDR 417


>sp|NUOD_VESOH|NADH-QUINONE oxidoreductase subunit D|Vesicomyosocius okutanii subsp.

Query: 1   IGTQDIVFGEVDR 13
           IGTQD+VFGE+DR
Sbjct: 405 IGTQDVVFGEIDR 417


>sp|NUOD_DECAR|NADH-QUINONE oxidoreductase subunit D|Dechloromonas aromatica (strain RCB)

Query: 1   IGTQDIVFGEVDR 13
           IG+QDIVFGE+DR
Sbjct: 405 IGSQDIVFGEIDR 417


>sp|NUOD_VEREI|NADH-QUINONE oxidoreductase subunit D|Verminephrobacter eiseniae (strain EF01-2)

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGE+DR
Sbjct: 405 IGTMDIVFGEIDR 417


>sp|NUOD_POLNA|NADH-QUINONE oxidoreductase subunit D|Polaromonas naphthalenivorans (strain CJ2)

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGE+DR
Sbjct: 405 IGTMDIVFGEIDR 417


>sp|NUOD1_STRM5|NADH-QUINONE oxidoreductase subunit D 1|Stenotrophomonas maltophilia (strain

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGEVDR
Sbjct: 424 IGTYDIVFGEVDR 436


>sp|NUOD_LEPCP|NADH-QUINONE oxidoreductase subunit D|Leptothrix cholodnii (strain ATCC 51168

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGE+DR
Sbjct: 405 IGTMDIVFGEIDR 417


>sp|NUOD_ACISJ|NADH-QUINONE oxidoreductase subunit D|Acidovorax sp. (strain JS42)

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGE+DR
Sbjct: 405 IGTMDIVFGEIDR 417


>sp|NUOD_POLSJ|NADH-QUINONE oxidoreductase subunit D|Polaromonas sp. (strain JS666 /

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGE+DR
Sbjct: 405 IGTMDIVFGEIDR 417


>sp|NUOD_PARC0|NADH-QUINONE oxidoreductase subunit D|Paracidovorax citrulli (strain AAC00-1)

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGE+DR
Sbjct: 405 IGTMDIVFGEIDR 417


>sp|NUOD_METPP|NADH-QUINONE oxidoreductase subunit D|Methylibium petroleiphilum (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGE+DR
Sbjct: 405 IGTMDIVFGEIDR 417


>sp|NUOD_NITOC|NADH-QUINONE oxidoreductase subunit D|Nitrosococcus oceani (strain ATCC 19707

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGE+DR
Sbjct: 405 IGTMDIVFGEIDR 417


>sp|NUOD_RUEPO|NADH-QUINONE oxidoreductase subunit D|Ruegeria pomeroyi (strain ATCC 700808

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGE+DR
Sbjct: 393 IGTMDIVFGEIDR 405


>sp|NUOD_XYLFT|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain Temecula1 /

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XYLFM|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M12)

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XYLFA|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain 9a5c)

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XYLF2|NADH-QUINONE oxidoreductase subunit D|Xylella fastidiosa (strain M23)

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XANOR|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XANOP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XANOM|NADH-QUINONE oxidoreductase subunit D|Xanthomonas oryzae pv. oryzae (strain

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XANE5|NADH-QUINONE oxidoreductase subunit D|Xanthomonas euvesicatoria pv. vesicatoria

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XANCP|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XANCB|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XANC8|NADH-QUINONE oxidoreductase subunit D|Xanthomonas campestris pv. campestris

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_XANAC|NADH-QUINONE oxidoreductase subunit D|Xanthomonas axonopodis pv. citri (strain

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_STRMK|NADH-QUINONE oxidoreductase subunit D|Stenotrophomonas maltophilia (strain

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD2_STRM5|NADH-QUINONE oxidoreductase subunit D 2|Stenotrophomonas maltophilia (strain

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGEVDR
Sbjct: 423 IGTYDLVFGEVDR 435


>sp|NUOD_AZOSB|NADH-QUINONE oxidoreductase subunit D|Azoarcus sp. (strain BH72)

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGE+DR
Sbjct: 405 IGTMDVVFGEIDR 417


>sp|NUOD_AROAE|NADH-QUINONE oxidoreductase subunit D|Aromatoleum aromaticum (strain DSM 19018

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGE+DR
Sbjct: 405 IGTMDVVFGEIDR 417


>sp|NUOD_RUEST|NADH-QUINONE oxidoreductase subunit D|Ruegeria sp. (strain TM1040) (Silicibacter

Query: 1   IGTQDIVFGEVDR 13
           IGT DIVFGE+DR
Sbjct: 391 IGTMDIVFGEIDR 403


>sp|NUOD_DINSH|NADH-QUINONE oxidoreductase subunit D|Dinoroseobacter shibae (strain DSM 16493

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGE+DR
Sbjct: 392 IGTMDVVFGEIDR 404


>sp|NUOD_RHOCA|NADH-QUINONE oxidoreductase subunit D|Rhodobacter capsulatus (Rhodopseudomonas

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGE+DR
Sbjct: 401 IGTMDVVFGEIDR 413


>sp|NUOD_SULDN|NADH-QUINONE oxidoreductase subunit D|Sulfurimonas denitrificans (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGT +IVFGEVDR
Sbjct: 400 IGTTNIVFGEVDR 412


>sp|NUOD_ALBFT|NADH-QUINONE oxidoreductase subunit D|Albidiferax ferrireducens (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGEVDR
Sbjct: 405 IGSLDIVFGEVDR 417


>sp|NUOD_METPB|NADH-QUINONE oxidoreductase subunit D|Methylorubrum populi (strain ATCC BAA-705

Query: 1   IGTQDIVFGEVDR 13
           +GT DIVFGEVDR
Sbjct: 384 LGTLDIVFGEVDR 396


>sp|NUOD_ROSDO|NADH-QUINONE oxidoreductase subunit D|Roseobacter denitrificans (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGE+DR
Sbjct: 395 IGTMDVVFGEIDR 407


>sp|NUOD_METEP|NADH-QUINONE oxidoreductase subunit D|Methylorubrum extorquens (strain PA1)

Query: 1   IGTQDIVFGEVDR 13
           +GT DIVFGEVDR
Sbjct: 384 LGTLDIVFGEVDR 396


>sp|NUOD_RHOCS|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum centenum (strain ATCC 51521

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 386 IGSMDIVFGEIDR 398


>sp|NUOD_METRJ|NADH-QUINONE oxidoreductase subunit D|Methylobacterium radiotolerans (strain

Query: 1   IGTQDIVFGEVDR 13
           +GT DIVFGEVDR
Sbjct: 384 LGTLDIVFGEVDR 396


>sp|NUOD_METS4|NADH-QUINONE oxidoreductase subunit D|Methylobacterium sp. (strain 4-46)

Query: 1   IGTQDIVFGEVDR 13
           +GT DIVFGEVDR
Sbjct: 384 LGTLDIVFGEVDR 396


>sp|NUOD_WOLPP|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis subsp. Culex pipiens

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 378 IGSLDIVFGEIDR 390


>sp|NUOD_EHRRW|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Welgevonden)

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 381 IGSLDIVFGEIDR 393


>sp|NUOD_EHRRG|NADH-QUINONE oxidoreductase subunit D|Ehrlichia ruminantium (strain Gardel)

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 381 IGSLDIVFGEIDR 393


>sp|NUOD_ANAPZ|NADH-QUINONE oxidoreductase subunit D|Anaplasma phagocytophilum (strain HZ)

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 383 IGSLDIVFGEIDR 395


>sp|NUOD_ANAMM|NADH-QUINONE oxidoreductase subunit D|Anaplasma marginale (strain St. Maries)

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 386 IGSLDIVFGEIDR 398


>sp|NUOD_CERS4|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17023

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGE+DR
Sbjct: 392 IGTLDVVFGEIDR 404


>sp|NUOD1_NITHX|NADH-QUINONE oxidoreductase subunit D 1|Nitrobacter hamburgensis (strain DSM

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 384 IGSLDIVFGEIDR 396


>sp|NUOD_CERS1|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17029

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGE+DR
Sbjct: 390 IGTLDVVFGEIDR 402


>sp|NUOD2_BEII9|NADH-QUINONE oxidoreductase subunit D 2|Beijerinckia indica subsp. indica

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 384 IGSLDIVFGEIDR 396


>sp|NUOD_WOLTR|NADH-QUINONE oxidoreductase subunit D|Wolbachia sp. subsp. Brugia malayi

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 378 IGSLDIVFGEIDR 390


>sp|NUOD_WOLPM|NADH-QUINONE oxidoreductase subunit D|Wolbachia pipientis wMel

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 378 IGSLDIVFGEIDR 390


>sp|NUOD_CERS5|NADH-QUINONE oxidoreductase subunit D|Cereibacter sphaeroides (strain ATCC 17025

Query: 1   IGTQDIVFGEVDR 13
           IGT D+VFGE+DR
Sbjct: 390 IGTLDVVFGEIDR 402


>sp|NUOD_LEGPL|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Lens)

Query: 1   IGTQDIVFGEVDR 13
           + +QDIVFGE+DR
Sbjct: 405 LASQDIVFGEIDR 417


>sp|NUOD_LEGPH|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila subsp. pneumophila

Query: 1   IGTQDIVFGEVDR 13
           + +QDIVFGE+DR
Sbjct: 405 LASQDIVFGEIDR 417


>sp|NUOD_LEGPC|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Corby)

Query: 1   IGTQDIVFGEVDR 13
           + +QDIVFGE+DR
Sbjct: 405 LASQDIVFGEIDR 417


>sp|NUOD_LEGPA|NADH-QUINONE oxidoreductase subunit D|Legionella pneumophila (strain Paris)

Query: 1   IGTQDIVFGEVDR 13
           + +QDIVFGE+DR
Sbjct: 405 LASQDIVFGEIDR 417


>sp|NUOD_EHRCR|NADH-QUINONE oxidoreductase subunit D|Ehrlichia chaffeensis (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 381 IGSLDIVFGEIDR 393


>sp|NUOD_HALHL|NADH-QUINONE oxidoreductase subunit D|Halorhodospira halophila (strain DSM 244

Query: 1   IGTQDIVFGEVDR 13
           IG+ D+VFGEVDR
Sbjct: 405 IGSLDVVFGEVDR 417


>sp|NUOD_HYPNA|NADH-QUINONE oxidoreductase subunit D|Hyphomonas neptunium (strain ATCC 15444)

Query: 1   IGTQDIVFGEVDR 13
           +GT DIVFGE+DR
Sbjct: 380 LGTLDIVFGEIDR 392


>sp|NUOD_EHRCJ|NADH-QUINONE oxidoreductase subunit D|Ehrlichia canis (strain Jake)

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 381 IGSLDIVFGEIDR 393


>sp|NUOD_CAUSK|NADH-QUINONE oxidoreductase subunit D|Caulobacter sp. (strain K31)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 404 LGSLDIVFGEVDR 416


>sp|NUOD_EHRS3|NADH-QUINONE oxidoreductase subunit D|Ehrlichia sennetsu (strain ATCC VR-367

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 376 LGSLDIVFGEVDR 388


>sp|NUOD_GRABC|NADH-QUINONE oxidoreductase subunit D|Granulibacter bethesdensis (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IG+ D+VFGEVDR
Sbjct: 388 IGSLDLVFGEVDR 400


>sp|NUOD_SULNB|NADH-QUINONE oxidoreductase subunit D|Sulfurovum sp. (strain NBC37-1)

Query: 1   IGTQDIVFGEVDR 13
           IG+ +IVFGEVDR
Sbjct: 397 IGSTNIVFGEVDR 409


>sp|NUOD_BRUSU|NADH-QUINONE oxidoreductase subunit D|Brucella suis biovar 1 (strain

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_BRUA4|NADH-QUINONE oxidoreductase subunit D|Brucella anthropi (strain ATCC 49188

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_AZOC5|NADH-QUINONE oxidoreductase subunit D|Azorhizobium caulinodans (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 390 LGSLDIVFGEVDR 402


>sp|NUOD_BRUSI|NADH-QUINONE oxidoreductase subunit D|Brucella suis (strain ATCC 23445

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_BRUO2|NADH-QUINONE oxidoreductase subunit D|Brucella ovis (strain ATCC 25840

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_BRUC2|NADH-QUINONE oxidoreductase subunit D|Brucella canis (strain ATCC 23365

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD1_BEII9|NADH-QUINONE oxidoreductase subunit D 1|Beijerinckia indica subsp. indica

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_RICM5|NADH-QUINONE oxidoreductase subunit D|Rickettsia massiliae (strain Mtu5)

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 379 IATLDIVFGEIDR 391


>sp|NUOD_RHILO|NADH-QUINONE oxidoreductase subunit D|Mesorhizobium japonicum (strain LMG 29417

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_PARL1|NADH-QUINONE oxidoreductase subunit D|Parvibaculum lavamentivorans (strain DS-1

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 380 LGSIDIVFGEVDR 392


>sp|NUOD_BRUME|NADH-QUINONE oxidoreductase subunit D|Brucella melitensis biotype 1 (strain

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_BRUAB|NADH-QUINONE oxidoreductase subunit D|Brucella abortus biovar 1 (strain

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_BRUA2|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain 2308)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_BRUA1|NADH-QUINONE oxidoreductase subunit D|Brucella abortus (strain S19)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_ACICJ|NADH-QUINONE oxidoreductase subunit D|Acidiphilium cryptum (strain JF-5)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 394 LGSIDIVFGEVDR 406


>sp|NUOD_CHESB|NADH-QUINONE oxidoreductase subunit D|Chelativorans sp. (strain BNC1)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_BRADU|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium diazoefficiens (strain JCM

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 386 LGSLDIVFGEVDR 398


>sp|NUOD_RICCN|NADH-QUINONE oxidoreductase subunit D|Rickettsia conorii (strain ATCC VR-613

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 379 IATLDIVFGEIDR 391


>sp|NUOD_RHOPA|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 390 LGSLDIVFGEVDR 402


>sp|NUOD2_NITHX|NADH-QUINONE oxidoreductase subunit D 2|Nitrobacter hamburgensis (strain DSM

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 390 LGSLDIVFGEVDR 402


>sp|NUOD_RICTY|NADH-QUINONE oxidoreductase subunit D|Rickettsia typhi (strain ATCC VR-144

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 377 IATLDIVFGEIDR 389


>sp|NUOD_XANP2|NADH-QUINONE oxidoreductase subunit D|Xanthobacter autotrophicus (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 390 LGSLDIVFGEVDR 402


>sp|NUOD_ORITI|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Ikeda)

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 384 IATLDIVFGEIDR 396


>sp|NUOD_NITWN|NADH-QUINONE oxidoreductase subunit D|Nitrobacter winogradskyi (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 390 LGSLDIVFGEVDR 402


>sp|NUOD_RICRS|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Sheila

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 379 IATLDIVFGEIDR 391


>sp|NUOD_PARDP|NADH-QUINONE oxidoreductase subunit D|Paracoccus denitrificans (strain Pd 1222)

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGEVDR
Sbjct: 400 IATLDIVFGEVDR 412


>sp|NUOD_RICBR|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain RML369-C)

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 379 IATLDIVFGEIDR 391


>sp|NUOD_RICB8|NADH-QUINONE oxidoreductase subunit D|Rickettsia bellii (strain OSU 85-389)

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 379 IATLDIVFGEIDR 391


>sp|NUOD_RHOPB|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB18)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_GLUDA|NADH-QUINONE oxidoreductase subunit D|Gluconacetobacter diazotrophicus (strain

Query: 1   IGTQDIVFGEVDR 13
           IG+ D+VFGE+DR
Sbjct: 404 IGSLDLVFGEIDR 416


>sp|NUOD_RICRO|NADH-QUINONE oxidoreductase subunit D|Rickettsia rickettsii (strain Iowa)

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 379 IATLDIVFGEIDR 391


>sp|NUOD_RICCK|NADH-QUINONE oxidoreductase subunit D|Rickettsia canadensis (strain McKiel)

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 379 IATLDIVFGEIDR 391


>sp|NUOD_RICAH|NADH-QUINONE oxidoreductase subunit D|Rickettsia akari (strain Hartford)

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 379 IATLDIVFGEIDR 391


>sp|NUOD_ORITB|NADH-QUINONE oxidoreductase subunit D|Orientia tsutsugamushi (strain Boryong)

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 384 IATLDIVFGEIDR 396


>sp|NUOD_RHIJ3|NADH-QUINONE oxidoreductase subunit D|Rhizobium johnstonii (strain DSM 114642

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NQO4_PARDE|NADH-QUINONE oxidoreductase subunit 4|Paracoccus denitrificans

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGEVDR
Sbjct: 400 IATLDIVFGEVDR 412


>sp|NUOD_RHOPT|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain TIE-1)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 390 LGSLDIVFGEVDR 402


>sp|NUOD_RHOP5|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisA53)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_BRASO|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain ORS 278)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 386 LGSLDIVFGEVDR 398


>sp|NUOD_RHOPS|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain BisB5)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 404 LGSLDIVFGEVDR 416


>sp|NUOD_RHILW|NADH-QUINONE oxidoreductase subunit D|Rhizobium leguminosarum bv. trifolii

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_PELUB|NADH-QUINONE oxidoreductase subunit D|Pelagibacter ubique (strain HTCC1062)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 379 LGSLDIVFGEVDR 391


>sp|NUOD1_RHIE6|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain CIAT 652)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_RHORT|NADH-QUINONE oxidoreductase subunit D|Rhodospirillum rubrum (strain ATCC 11170

Query: 1   IGTQDIVFGEVDR 13
           IG+ D+VFGE+DR
Sbjct: 380 IGSIDVVFGEIDR 392


>sp|NUOD_BRASB|NADH-QUINONE oxidoreductase subunit D|Bradyrhizobium sp. (strain BTAi1 /

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 386 LGSLDIVFGEVDR 398


>sp|NUOD_MARMM|NADH-QUINONE oxidoreductase subunit D|Maricaulis maris (strain MCS10)

Query: 1   IGTQDIVFGEVDR 13
           IG+ D+VFGE+DR
Sbjct: 390 IGSLDVVFGEIDR 402


>sp|NUOD_RICPR|NADH-QUINONE oxidoreductase subunit D|Rickettsia prowazekii (strain Madrid E)

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 377 IATLDIVFGEIDR 389


>sp|NUOD_BART1|NADH-QUINONE oxidoreductase subunit D|Bartonella tribocorum (strain DSM 28219

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSIDIVFGEVDR 396


>sp|NUOD_RICFE|NADH-QUINONE oxidoreductase subunit D|Rickettsia felis (strain ATCC VR-1525

Query: 1   IGTQDIVFGEVDR 13
           I T DIVFGE+DR
Sbjct: 379 IATLDIVFGEIDR 391


>sp|NUOD_AGRFC|NADH-QUINONE oxidoreductase subunit D|Agrobacterium fabrum (strain C58 /

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD1_RHIEC|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium etli (strain ATCC 51251

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_PHEZH|NADH-QUINONE oxidoreductase subunit D|Phenylobacterium zucineum (strain HLK1)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGE+DR
Sbjct: 399 LGSLDIVFGEIDR 411


>sp|NUOD_JANSC|NADH-QUINONE oxidoreductase subunit D|Jannaschia sp. (strain CCS1)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 400 LGSLDIVFGEVDR 412


>sp|NUOD_RHOP2|NADH-QUINONE oxidoreductase subunit D|Rhodopseudomonas palustris (strain HaA2)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 389 LGSLDIVFGEVDR 401


>sp|NUOD_PARM1|NADH-QUINONE oxidoreductase subunit D|Paramagnetospirillum magneticum (strain

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 380 IGSIDIVFGEIDR 392


>sp|NUOD_AFIC5|NADH-QUINONE oxidoreductase subunit D|Afipia carboxidovorans (strain ATCC 49405

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 393 LGSLDIVFGEVDR 405


>sp|NUOD1_RHIME|NADH-QUINONE oxidoreductase subunit D 1|Rhizobium meliloti (strain 1021)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_BARQU|NADH-QUINONE oxidoreductase subunit D|Bartonella quintana (strain Toulouse)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSIDIVFGEVDR 396


>sp|NUOD_CAUVC|NADH-QUINONE oxidoreductase subunit D|Caulobacter vibrioides (strain ATCC 19089

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGE+DR
Sbjct: 386 LGSLDIVFGEIDR 398


>sp|NUOD_BARHE|NADH-QUINONE oxidoreductase subunit D|Bartonella henselae (strain ATCC 49882

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSIDIVFGEVDR 396


>sp|NUOD1_SINMW|NADH-QUINONE oxidoreductase subunit D 1|Sinorhizobium medicae (strain WSM419)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSLDIVFGEVDR 396


>sp|NUOD_NITSB|NADH-QUINONE oxidoreductase subunit D|Nitratiruptor sp. (strain SB155-2)

Query: 1   IGTQDIVFGEVDR 13
           IG+ +IVFGE+DR
Sbjct: 398 IGSTNIVFGEIDR 410


>sp|NUOD_BARBK|NADH-QUINONE oxidoreductase subunit D|Bartonella bacilliformis (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIVFGEVDR
Sbjct: 384 LGSIDIVFGEVDR 396


>sp|NUOD_ACIF5|NADH-QUINONE oxidoreductase subunit D|Acidithiobacillus ferrooxidans (strain

Query: 1   IGTQDIVFGEVDR 13
           + T DIVFGE+DR
Sbjct: 405 LSTMDIVFGEIDR 417


>sp|NUOD1_KORVE|NADH-QUINONE oxidoreductase subunit D 1|Koribacter versatilis (strain Ellin345)

Query: 1   IGTQDIVFGEVDR 13
           IGT DIV GEVDR
Sbjct: 369 IGTLDIVLGEVDR 381


>sp|NUOD_TRIL1|NADH-QUINONE oxidoreductase subunit D|Trichlorobacter lovleyi (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGT DIV GE+DR
Sbjct: 378 IGTLDIVLGEIDR 390


>sp|NUOD_CITBB|NADH-QUINONE oxidoreductase subunit D|Citrifermentans bemidjiense (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGT DIV GE+DR
Sbjct: 377 IGTLDIVLGEIDR 389


>sp|NUOD_GEOUR|NADH-QUINONE oxidoreductase subunit D|Geotalea uraniireducens (strain Rf4)

Query: 1   IGTQDIVFGEVDR 13
           IGT DIV GE+DR
Sbjct: 378 IGTLDIVLGEIDR 390


>sp|NUOD_GEOSL|NADH-QUINONE oxidoreductase subunit D|Geobacter sulfurreducens (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGT DIV GE+DR
Sbjct: 378 IGTLDIVLGEIDR 390


>sp|NUOD_GEOMG|NADH-QUINONE oxidoreductase subunit D|Geobacter metallireducens (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IGT DIV GE+DR
Sbjct: 378 IGTLDIVLGEIDR 390


>sp|NUOD_CHLPM|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeovibrioides (strain DSM 265

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 388 IGSLDIVLGEVDR 400


>sp|NUOD_CHLCH|NADH-QUINONE oxidoreductase subunit D|Chlorobium chlorochromatii (strain CaD3)

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 388 IGSIDIVLGEVDR 400


>sp|NUOD_MAGMM|NADH-QUINONE oxidoreductase subunit D|Magnetococcus marinus (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIVFGE+DR
Sbjct: 385 IGSIDIVFGEIDR 397


>sp|NUOD_PROA2|NADH-QUINONE oxidoreductase subunit D|Prosthecochloris aestuarii (strain DSM 271

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 388 IGSIDIVLGEVDR 400


>sp|NUOD_WOLSU|NADH-QUINONE oxidoreductase subunit D|Wolinella succinogenes (strain ATCC 29543

Query: 1   IGTQDIVFGEVDR 13
           IG  +IVFGE+DR
Sbjct: 396 IGNLNIVFGEIDR 408


>sp|NUOD_CHLPD|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain DSM

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 388 IGSIDIVLGEVDR 400


>sp|NUOD_CHLL2|NADH-QUINONE oxidoreductase subunit D|Chlorobium limicola (strain DSM 245

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 383 IGSIDIVLGEVDR 395


>sp|NUOD_CHLTE|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum tepidum (strain ATCC 49652

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 388 IGSIDIVLGEVDR 400


>sp|NUOD_CHLL3|NADH-QUINONE oxidoreductase subunit D|Chlorobium luteolum (strain DSM 273

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 383 IGSIDIVLGEVDR 395


>sp|NUOD_PELPB|NADH-QUINONE oxidoreductase subunit D|Pelodictyon phaeoclathratiforme (strain

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 388 IGSIDIVLGEVDR 400


>sp|NUOD_CHLP8|NADH-QUINONE oxidoreductase subunit D|Chlorobaculum parvum (strain DSM 263

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 388 IGSIDIVLGEVDR 400


>sp|NUOD2_CHLT3|NADH-QUINONE oxidoreductase subunit D 2|Chloroherpeton thalassium (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 387 IGSVDIVLGEVDR 399


>sp|NUOD2_SOLUE|NADH-QUINONE oxidoreductase subunit D 2|Solibacter usitatus (strain Ellin6076)

Query: 1   IGTQDIVFGEVDR 13
           IGT DIV GE+DR
Sbjct: 358 IGTLDIVLGEIDR 370


>sp|NUOD_CHLPB|NADH-QUINONE oxidoreductase subunit D|Chlorobium phaeobacteroides (strain BS1)

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GEVDR
Sbjct: 388 IGSIDIVLGEVDR 400


>sp|NUOD_AMOA5|NADH-QUINONE oxidoreductase subunit D|Amoebophilus asiaticus (strain 5a2)

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GE+DR
Sbjct: 391 IGSIDIVLGEIDR 403


>sp|NUOD_FRATW|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   IGTQDIVFGEVDR 13
           I T D+VFG+VDR
Sbjct: 405 ISTIDVVFGDVDR 417


>sp|NUOD_FRATT|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   IGTQDIVFGEVDR 13
           I T D+VFG+VDR
Sbjct: 405 ISTIDVVFGDVDR 417


>sp|NUOD_FRATO|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   IGTQDIVFGEVDR 13
           I T D+VFG+VDR
Sbjct: 405 ISTIDVVFGDVDR 417


>sp|NUOD_FRATN|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. novicida

Query: 1   IGTQDIVFGEVDR 13
           I T D+VFG+VDR
Sbjct: 405 ISTIDVVFGDVDR 417


>sp|NUOD_FRATM|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. mediasiatica

Query: 1   IGTQDIVFGEVDR 13
           I T D+VFG+VDR
Sbjct: 405 ISTIDVVFGDVDR 417


>sp|NUOD_FRATH|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   IGTQDIVFGEVDR 13
           I T D+VFG+VDR
Sbjct: 405 ISTIDVVFGDVDR 417


>sp|NUOD_FRATF|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. holarctica

Query: 1   IGTQDIVFGEVDR 13
           I T D+VFG+VDR
Sbjct: 405 ISTIDVVFGDVDR 417


>sp|NUOD_FRAT1|NADH-QUINONE oxidoreductase subunit D|Francisella tularensis subsp. tularensis

Query: 1   IGTQDIVFGEVDR 13
           I T D+VFG+VDR
Sbjct: 405 ISTIDVVFGDVDR 417


>sp|NUOD_HELPY|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain ATCC 700392

Query: 1   IGTQDIVFGEVDR 13
           IG+ + VFGEVDR
Sbjct: 397 IGSTNAVFGEVDR 409


>sp|NUOD_HELPS|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain Shi470)

Query: 1   IGTQDIVFGEVDR 13
           IG+ + VFGEVDR
Sbjct: 397 IGSTNAVFGEVDR 409


>sp|NUOD_HELPJ|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain J99 /

Query: 1   IGTQDIVFGEVDR 13
           IG+ + VFGEVDR
Sbjct: 397 IGSTNAVFGEVDR 409


>sp|NUOD_HELPH|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain HPAG1)

Query: 1   IGTQDIVFGEVDR 13
           IG+ + VFGEVDR
Sbjct: 397 IGSTNAVFGEVDR 409


>sp|NUOD_HELPG|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain G27)

Query: 1   IGTQDIVFGEVDR 13
           IG+ + VFGEVDR
Sbjct: 397 IGSTNAVFGEVDR 409


>sp|NUOD_HELP2|NADH-QUINONE oxidoreductase subunit D|Helicobacter pylori (strain P12)

Query: 1   IGTQDIVFGEVDR 13
           IG+ + VFGEVDR
Sbjct: 397 IGSTNAVFGEVDR 409


>sp|NUOD_HELAH|NADH-QUINONE oxidoreductase subunit D|Helicobacter acinonychis (strain Sheeba)

Query: 1   IGTQDIVFGEVDR 13
           IG+ + VFGEVDR
Sbjct: 397 IGSTNAVFGEVDR 409


>sp|NUOD_COXB2|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuG_Q212)

Query: 1   IGTQDIVFGEVDR 13
           I + DIVFGE+DR
Sbjct: 405 ISSIDIVFGEIDR 417


>sp|NUOD_COXB1|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain CbuK_Q154)

Query: 1   IGTQDIVFGEVDR 13
           I + DIVFGE+DR
Sbjct: 405 ISSIDIVFGEIDR 417


>sp|NUOD_FRAP2|NADH-QUINONE oxidoreductase subunit D|Francisella philomiragia subsp.

Query: 1   IGTQDIVFGEVDR 13
           I T D+VFG+VDR
Sbjct: 405 ISTIDVVFGDVDR 417


>sp|NUOD_DELAS|NADH-QUINONE oxidoreductase subunit D|Delftia acidovorans (strain DSM 14801

Query: 1   IGTQDIVFGEVDR 13
           + T DIVFG+VDR
Sbjct: 405 LSTLDIVFGDVDR 417


>sp|NUOD_COXBU|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 493

Query: 1   IGTQDIVFGEVDR 13
           I + DIVFGE+DR
Sbjct: 405 ISSIDIVFGEIDR 417


>sp|NUOD_COXBR|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain RSA 331

Query: 1   IGTQDIVFGEVDR 13
           I + DIVFGE+DR
Sbjct: 405 ISSIDIVFGEIDR 417


>sp|NUOD_COXBN|NADH-QUINONE oxidoreductase subunit D|Coxiella burnetii (strain Dugway

Query: 1   IGTQDIVFGEVDR 13
           I + DIVFGE+DR
Sbjct: 405 ISSIDIVFGEIDR 417


>sp|NUOD_SPHAL|NADH-QUINONE oxidoreductase subunit D|Sphingopyxis alaskensis (strain DSM 13593

Query: 1   IGTQDIVFGEVDR 13
           IG  D+VFGE DR
Sbjct: 393 IGAIDVVFGECDR 405


>sp|NUOD2_THEYD|NADH-QUINONE oxidoreductase subunit D 2|Thermodesulfovibrio yellowstonii (strain

Query: 1   IGTQDIVFGEVDR 13
           IGT DIV GE DR
Sbjct: 389 IGTLDIVMGEADR 401


>sp|NUOD_CAMHC|NADH-QUINONE oxidoreductase subunit D|Campylobacter hominis (strain ATCC BAA-381

Query: 1   IGTQDIVFGEVDR 13
           IG+ +I+ GEVDR
Sbjct: 396 IGSSNIILGEVDR 408


>sp|NUOD_CAMC5|NADH-QUINONE oxidoreductase subunit D|Campylobacter curvus (strain 525.92)

Query: 1   IGTQDIVFGEVDR 13
           IG+ +I+ GEVDR
Sbjct: 397 IGSTNIILGEVDR 409


>sp|NUOD_CAMC1|NADH-QUINONE oxidoreductase subunit D|Campylobacter concisus (strain 13826)

Query: 1   IGTQDIVFGEVDR 13
           IG+ +I+ GEVDR
Sbjct: 397 IGSTNIILGEVDR 409


>sp|NUOD2_SYMTH|NADH-QUINONE oxidoreductase subunit D 2|Symbiobacterium thermophilum (strain DSM

Query: 1   IGTQDIVFGEVDR 13
           +G+ D+V GEVDR
Sbjct: 372 LGSIDVVLGEVDR 384


>sp|NDHH1_GLOVI|NAD(P)H-QUINONE oxidoreductase subunit H 1|Gloeobacter violaceus (strain ATCC 29082

Query: 1   IGTQDIVFGEVDR 13
           +G+ DI+ GEVDR
Sbjct: 381 LGSVDIIMGEVDR 393


>sp|NUOD2_ROSCS|NADH-QUINONE oxidoreductase subunit D 2|Roseiflexus castenholzii (strain DSM

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIV GEVDR
Sbjct: 362 LGSIDIVMGEVDR 374


>sp|NUOD_NOVAD|NADH-QUINONE oxidoreductase subunit D|Novosphingobium aromaticivorans (strain

Query: 1   IGTQDIVFGEVDR 13
           +G  D+VFGE DR
Sbjct: 391 LGAIDVVFGECDR 403


>sp|NUOD_ERYLH|NADH-QUINONE oxidoreductase subunit D|Erythrobacter litoralis (strain HTCC2594)

Query: 1   IGTQDIVFGEVDR 13
           +G  D+VFGE DR
Sbjct: 391 LGAIDVVFGECDR 403


>sp|NDHH_SYNJA|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain JA-3-3Ab)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DI+ GEVDR
Sbjct: 382 LGSIDIIMGEVDR 394


>sp|NUOD2_HERA2|NADH-QUINONE oxidoreductase subunit D 2|Herpetosiphon aurantiacus (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIV GEVDR
Sbjct: 358 LGSIDIVMGEVDR 370


>sp|NDHH_SYNJB|NAD(P)H-QUINONE oxidoreductase subunit H|Synechococcus sp. (strain JA-2-3B'a(2-13))

Query: 1   IGTQDIVFGEVDR 13
           +G+ DI+ GEVDR
Sbjct: 380 LGSIDIIMGEVDR 392


>sp|NUOD1_CHLAA|NADH-QUINONE oxidoreductase subunit D 1|Chloroflexus aurantiacus (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIV GEVDR
Sbjct: 357 LGSIDIVMGEVDR 369


>sp|NUOD1_SYMTH|NADH-QUINONE oxidoreductase subunit D 1|Symbiobacterium thermophilum (strain DSM

Query: 1   IGTQDIVFGEVDR 13
           I T D VFGEVDR
Sbjct: 392 IATIDPVFGEVDR 404


>sp|MYCC_BACIU|MYCOSUBTILIN synthase subunit C|Bacillus subtilis

Query: 2    GTQDIVFGEV 11
            GTQD+VFG V
Sbjct: 1585 GTQDVVFGTV 1594


>sp|NUOD_DEHMC|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain CBDB1)

Query: 2   GTQDIVFGEVDR 13
           G+ DIV GEVDR
Sbjct: 356 GSIDIVMGEVDR 367


>sp|NUOD1_CYTH3|NADH-QUINONE oxidoreductase subunit D 1|Cytophaga hutchinsonii (strain ATCC

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIV GE+DR
Sbjct: 380 LGSFDIVMGEIDR 392


>sp|NUOD1_THEYD|NADH-QUINONE oxidoreductase subunit D 1|Thermodesulfovibrio yellowstonii (strain

Query: 1   IGTQDIVFGEVDR 13
           IG+ DIV GE DR
Sbjct: 385 IGSIDIVLGECDR 397


>sp|NUOD_DEHM1|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 2   GTQDIVFGEVDR 13
           G+ DIV GEVDR
Sbjct: 356 GSIDIVMGEVDR 367


>sp|NUOD_DEHMB|NADH-QUINONE oxidoreductase subunit D|Dehalococcoides mccartyi (strain ATCC

Query: 2   GTQDIVFGEVDR 13
           G+ DIV GEVDR
Sbjct: 356 GSIDIVMGEVDR 367


>sp|NUOD_MOOTA|NADH-QUINONE oxidoreductase subunit D|Moorella thermoacetica (strain ATCC 39073

Query: 1   IGTQDIVFGEVDR 13
           I + DIV GEVDR
Sbjct: 359 IASIDIVLGEVDR 371


>sp|SYH_BACVZ|HISTIDINE--TRNA ligase|Bacillus velezensis (strain DSM 23117

Query: 2  GTQDIVFGEVDR 13
          GTQDI+ GE DR
Sbjct: 8  GTQDILPGESDR 19


>sp|SYH_BACSU|HISTIDINE--TRNA ligase|Bacillus subtilis (strain 168)

Query: 2  GTQDIVFGEVDR 13
          GTQDI+ GE DR
Sbjct: 8  GTQDILPGESDR 19


>sp|NUOD_HELHP|NADH-QUINONE oxidoreductase subunit D|Helicobacter hepaticus (strain ATCC 51449

Query: 1   IGTQDIVFGEVDR 13
           + + ++VFGE+DR
Sbjct: 397 LASTNVVFGEIDR 409


>sp|NUOD1_ROSS1|NADH-QUINONE oxidoreductase subunit D 1|Roseiflexus sp. (strain RS-1)

Query: 1   IGTQDIVFGEVDR 13
           +G+ DIV GEVD+
Sbjct: 362 LGSIDIVMGEVDK 374


>sp|NUOD_GEOKA|NADH-QUINONE oxidoreductase subunit D|Geobacillus kaustophilus (strain HTA426)

Query: 1   IGTQDIVFGEVD 12
           +G+ DIV GEVD
Sbjct: 355 LGSIDIVLGEVD 366


>sp|NUOD_GEOTN|NADH-QUINONE oxidoreductase subunit D|Geobacillus thermodenitrificans (strain

Query: 1   IGTQDIVFGEVD 12
           +G+ DIV GEVD
Sbjct: 354 LGSIDIVLGEVD 365


>sp|SYH_GEOSW|HISTIDINE--TRNA ligase|Geobacillus sp. (strain WCH70)

Query: 2  GTQDIVFGEVDR 13
          GTQDI+ GEV++
Sbjct: 8  GTQDILPGEVEK 19


>sp|NUOD_DESRM|NADH-QUINONE oxidoreductase subunit D|Desulforamulus reducens (strain ATCC

Query: 1   IGTQDIVFGEVD 12
           +G+ DIV GEVD
Sbjct: 354 LGSIDIVLGEVD 365