1|SequenceR|10|1|RGWVAGNASM
>sp|R1A_CVMA5|REPLICASE polyprotein 1a|Murine coronavirus (strain A59) (MHV-A59)
Query: 1 RGWVAGN 7
RGWVAGN
Sbjct: 398 RGWVAGN 404
>sp|R1AB_CVMA5|REPLICASE polyprotein 1ab|Murine coronavirus (strain A59) (MHV-A59)
Query: 1 RGWVAGN 7
RGWVAGN
Sbjct: 398 RGWVAGN 404
>sp|R1A_CVMJH|REPLICASE polyprotein 1a|Murine coronavirus (strain JHM) (MHV-JHM)
Query: 1 RGWVAGN 7
RGWV GN
Sbjct: 398 RGWVPGN 404
>sp|R1A_CVM2|REPLICASE polyprotein 1a|Murine coronavirus (strain 2) (MHV-2)
Query: 1 RGWVAGN 7
RGWV GN
Sbjct: 398 RGWVPGN 404
>sp|R1AB_CVMJH|REPLICASE polyprotein 1ab|Murine coronavirus (strain JHM) (MHV-JHM)
Query: 1 RGWVAGN 7
RGWV GN
Sbjct: 398 RGWVPGN 404
>sp|R1AB_CVM2|REPLICASE polyprotein 1ab|Murine coronavirus (strain 2) (MHV-2)
Query: 1 RGWVAGN 7
RGWV GN
Sbjct: 398 RGWVPGN 404
>sp|POLS_DXV96|STRUCTURAL polyprotein|Drosophila x virus (isolate Chung/1996)
Query: 3 WVAGNASM 10
W AG+ASM
Sbjct: 719 WTAGSASM 726
>sp|R1A_CVBQ|REPLICASE polyprotein 1a|Bovine coronavirus (strain Quebec) (BCoV)
Query: 1 RGWVAGN 7
+GWV GN
Sbjct: 400 KGWVPGN 406
>sp|R1A_CVBM|REPLICASE polyprotein 1a|Bovine coronavirus (strain Mebus) (BCoV)
Query: 1 RGWVAGN 7
+GWV GN
Sbjct: 400 KGWVPGN 406
>sp|R1A_CVBLU|REPLICASE polyprotein 1a|Bovine coronavirus (strain 98TXSF-110-LUN)
Query: 1 RGWVAGN 7
+GWV GN
Sbjct: 400 KGWVPGN 406
>sp|R1A_CVBEN|REPLICASE polyprotein 1a|Bovine coronavirus (strain 98TXSF-110-ENT)
Query: 1 RGWVAGN 7
+GWV GN
Sbjct: 400 KGWVPGN 406
>sp|R1AB_CVBQ|REPLICASE polyprotein 1ab|Bovine coronavirus (strain Quebec) (BCoV)
Query: 1 RGWVAGN 7
+GWV GN
Sbjct: 400 KGWVPGN 406
>sp|R1AB_CVBM|REPLICASE polyprotein 1ab|Bovine coronavirus (strain Mebus) (BCoV)
Query: 1 RGWVAGN 7
+GWV GN
Sbjct: 400 KGWVPGN 406
>sp|R1AB_CVBLU|REPLICASE polyprotein 1ab|Bovine coronavirus (strain 98TXSF-110-LUN)
Query: 1 RGWVAGN 7
+GWV GN
Sbjct: 400 KGWVPGN 406
>sp|R1AB_CVBEN|REPLICASE polyprotein 1ab|Bovine coronavirus (strain 98TXSF-110-ENT)
Query: 1 RGWVAGN 7
+GWV GN
Sbjct: 400 KGWVPGN 406
>sp|R1A_CVHN5|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N5)
Query: 2 GWVAGN 7
GWV+GN
Sbjct: 374 GWVSGN 379
>sp|R1A_CVHN2|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N2)
Query: 2 GWVAGN 7
GWV+GN
Sbjct: 374 GWVSGN 379
>sp|R1A_CVHN1|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N1)
Query: 2 GWVAGN 7
GWV+GN
Sbjct: 374 GWVSGN 379
>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)
Query: 2 GWVAGN 7
GWV+GN
Sbjct: 374 GWVSGN 379
>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)
Query: 2 GWVAGN 7
GWV+GN
Sbjct: 374 GWVSGN 379
>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)
Query: 2 GWVAGN 7
GWV+GN
Sbjct: 374 GWVSGN 379
>sp|R1A_CVHOC|REPLICASE polyprotein 1a|Human coronavirus OC43 (HCoV-OC43)
Query: 1 RGWVAGN 7
+GW+ GN
Sbjct: 400 KGWIPGN 406
>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)
Query: 1 RGWVAGN 7
+GW+ GN
Sbjct: 400 KGWIPGN 406
>sp|POLG_RTSVT|GENOME polyprotein|Rice tungro spherical virus (strain
Query: 1 RGWVAGNA 8
+GWV+G A
Sbjct: 30 QGWVSGKA 37
>sp|POLG_RTSVA|GENOME polyprotein|Rice tungro spherical virus (strain
Query: 1 RGWVAGNA 8
+GWV+G A
Sbjct: 30 QGWVSGKA 37
>sp|L_LASV|RNA-DIRECTED RNA polymerase L|Mammarenavirus lassaense
Query: 1 RGWVAGNAS 9
R WV GN S
Sbjct: 1470 RDWVDGNRS 1478
>sp|L_LASSJ|RNA-DIRECTED RNA polymerase L|Lassa virus (strain Mouse/Sierra Leone/Josiah/1976)
Query: 1 RGWVAGNAS 9
R WV GN S
Sbjct: 1467 RDWVDGNRS 1475
>sp|POLG_TMEVG|GENOME polyprotein|Theiler's murine encephalomyelitis virus (strain
Query: 1 RGWVAGNAS 9
R W+ GN+S
Sbjct: 871 RIWIQGNSS 879
>sp|R1A_IBVBC|REPLICASE polyprotein 1a|Avian infectious bronchitis virus (strain
Query: 3 WVAGNAS 9
WV GNA+
Sbjct: 1598 WVEGNAN 1604
>sp|R1A_IBVB|REPLICASE polyprotein 1a|Avian infectious bronchitis virus (strain
Query: 3 WVAGNAS 9
WV GNA+
Sbjct: 1598 WVEGNAN 1604
>sp|R1AB_IBVBC|REPLICASE polyprotein 1ab|Avian infectious bronchitis virus (strain
Query: 3 WVAGNAS 9
WV GNA+
Sbjct: 1598 WVEGNAN 1604
>sp|R1AB_IBVB|REPLICASE polyprotein 1ab|Avian infectious bronchitis virus (strain
Query: 3 WVAGNAS 9
WV GNA+
Sbjct: 1598 WVEGNAN 1604
>sp|DNBI_HHV7J|MAJOR DNA-binding protein|Human herpesvirus 7 (strain JI)
Query: 2 GWVAGNA 8
GW+AG+
Sbjct: 954 GWIAGSG 960
>sp|HEMA_I75A5|HEMAGGLUTININ A virus (strain A/Tern/Australia/G70C/1975
Query: 2 GWVAGN 7
GW+ GN
Sbjct: 75 GWILGN 80
>sp|HEMA_I78AE|HEMAGGLUTININ A virus (strain A/Duck/New
Query: 2 GWVAGN 7
GW+ GN
Sbjct: 75 GWILGN 80
>sp|VG55_BPML5|GENE 55 protein|Mycobacterium phage L5 (Mycobacteriophage L5)
Query: 1 RGWVAGNAS 9
R W GNAS
Sbjct: 133 RRWSGGNAS 141
2|SequenceR|15|6|LRSRVRGWVA
>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)
Query: 4 RVRGWVA 10
RVRGWV
Sbjct: 6019 RVRGWVG 6025
>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)
Query: 4 RVRGWVA 10
RVRGWV
Sbjct: 6039 RVRGWVG 6045
>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)
Query: 4 RVRGWVA 10
RVRGWV
Sbjct: 6069 RVRGWVG 6075
>sp|VP35_FOWPN|IMMUNODOMINANT envelope protein p35|Fowlpox virus (strain NVSL) (FPV)
Query: 1 LRSRVRGWV 9
++SR+ GW+
Sbjct: 259 IKSRIDGWI 267
>sp|L_CHAV|RNA-DIRECTED RNA polymerase L|Chandipura virus (strain I653514) (CHPV)
Query: 1 LRSRVRGWVA 10
+RS +RGW
Sbjct: 124 VRSFIRGWTG 133
>sp|CAP6_ADES1|PRE-PROTEIN VI|Snake adenovirus serotype 1 (SnAdV-1)
Query: 2 RSRVRGW 8
R RVRGW
Sbjct: 196 RKRVRGW 202
>sp|RDRP_BPGA|RNA-DIRECTED RNA polymerase beta chain|Enterobacteria phage GA (Bacteriophage
Query: 1 LRSRVRGW 8
L +R+RGW
Sbjct: 409 LCNRIRGW 416
>sp|Y06O_BPT4|UNCHARACTERIZED 15.1 kDa protein in|Enterobacteria phage T4 (Bacteriophage T4)
Query: 2 RSRVRGWVA 10
R RVR W A
Sbjct: 88 RKRVRDWKA 96
>sp|RDRP_BPFR|RNA-DIRECTED RNA polymerase beta chain|Enterobacteria phage fr (Bacteriophage
Query: 3 SRVRGW 8
+R+RGW
Sbjct: 409 NRIRGW 414
3|SequenceR|20|11|EPFARLRSRV
***** No hits found ******
4|SequenceR|25|16|CAALREPFAR
>sp|POLG_TRMVU|GENOME polyprotein|Triticum mosaic virus (isolate Triticum
Query: 1 CAALREP 7
CA +REP
Sbjct: 2190 CATIREP 2196
>sp|LTP_HHV8P|LARGE tegument protein deneddylase|Human herpesvirus 8 type P
Query: 2 AALREPF 8
AA+REPF
Sbjct: 112 AAIREPF 118
5|SequenceR|30|21|AAEAGCAALR
***** No hits found ******
6|SequenceR|35|26|CRGYAAAEAG
>sp|VE1_HPV73|REPLICATION protein E1|Human papillomavirus 73
Query: 1 CRGYAAAE 8
CR Y AAE
Sbjct: 410 CRHYKAAE 417
>sp|VE1_HPV34|REPLICATION protein E1|Human papillomavirus type 34
Query: 1 CRGYAAAE 8
CR Y AAE
Sbjct: 407 CRHYKAAE 414
7|SequenceR|40|31|TSAQVCRGYA
>sp|MCP_SHV21|MAJOR capsid protein|Saimiriine herpesvirus 2 (strain 11)
Query: 2 SAQVCRGY 9
S Q CRGY
Sbjct: 569 SFQECRGY 576
>sp|GP_INSV|ENVELOPMENT polyprotein|Impatiens necrotic spot virus (INSV)
Query: 3 AQVCRGY 9
A +CRGY
Sbjct: 1063 ATMCRGY 1069
8|SequenceR|45|36|RGGPATSAQV
>sp|PB2_I03A0|POLYMERASE basic protein 2|Influenza A virus (strain A/Hong
Query: 1 RGGPATSA 8
R GPATSA
Sbjct: 101 RNGPATSA 108
>sp|DPOL_ADEB3|DNA polymerase|Bovine adenovirus B serotype 3
Query: 1 RGGPATSAQ 9
R GPAT+ Q
Sbjct: 44 RSGPATAPQ 52
>sp|PB2S1_I18A0|PB2-S1 A virus (strain A/Brevig
Query: 1 RGGPATSA 8
R GP TSA
Sbjct: 101 RNGPTTSA 108
>sp|ICP4_GAHVG|MAJOR viral transcription factor ICP4|Gallid herpesvirus 2 (strain GA)
Query: 2 GGPATSAQ 9
GGP T+AQ
Sbjct: 1375 GGPETTAQ 1382
>sp|ICP4_GAHVM|MAJOR viral transcription factor ICP4|Gallid herpesvirus 2 (strain
Query: 2 GGPATSAQ 9
GGP T+AQ
Sbjct: 2281 GGPETTAQ 2288
>sp|PB2_I85A7|POLYMERASE basic protein 2|Influenza A virus (strain A/Ruddy
Query: 1 RGGPATS 7
R GPATS
Sbjct: 101 RNGPATS 107
>sp|PB2_I56A1|POLYMERASE basic protein 2|Influenza A virus (strain
Query: 1 RGGPATS 7
R GPATS
Sbjct: 101 RNGPATS 107
>sp|PB2_I01A3|POLYMERASE basic protein 2|Influenza A virus (strain A/Chicken/Hong
Query: 1 RGGPATSA 8
R GP TSA
Sbjct: 101 RNGPTTSA 108
>sp|PB2_I00A0|POLYMERASE basic protein 2|Influenza A virus (strain A/Duck/Hong
Query: 1 RGGPATSA 8
R GP TSA
Sbjct: 101 RNGPTTSA 108
>sp|PB2_I02A6|POLYMERASE basic protein 2|Influenza A virus (strain A/Chicken/Hong
Query: 1 RGGPATSA 8
R GP TSA
Sbjct: 101 RNGPTTSA 108
>sp|PB2_I03A1|POLYMERASE basic protein 2|Influenza A virus (strain
Query: 1 RGGPATSA 8
R GP TSA
Sbjct: 101 RNGPTTSA 108
>sp|PB2_I02A4|POLYMERASE basic protein 2|Influenza A virus (strain A/Silky
Query: 1 RGGPATSA 8
R GP TSA
Sbjct: 100 RNGPTTSA 107
>sp|PB2_I18A0|POLYMERASE basic protein 2|Influenza A virus (strain A/Brevig
Query: 1 RGGPATSA 8
R GP TSA
Sbjct: 101 RNGPTTSA 108
9|SequenceR|50|41|FDKSLRGGPA
>sp|NS1AB_OASV1|NON-STRUCTURAL polyprotein 1AB|Ovine astrovirus 1 (OAstV-1)
Query: 1 FDKSLRGGP 9
DK RGGP
Sbjct: 1338 LDKLWRGGP 1346
>sp|NS1AB_MASV1|NON-STRUCTURAL polyprotein 1AB|Mink astrovirus 1 (MAstV-1)
Query: 1 FDKSLRGGP 9
DK RGGP
Sbjct: 1372 LDKLWRGGP 1380
10|SequenceR|55|46|FERACFDKSL
>sp|DNBI_HHV8P|MAJOR DNA-binding protein|Human herpesvirus 8 type P
Query: 1 FERACFDK 8
F+ ACFDK
Sbjct: 667 FKGACFDK 674
>sp|RDRP_SHMV|REPLICASE large subunit|Sunn-hemp mosaic virus (SHMV) (TMV
Query: 1 FERACFDK 8
+++ACFD+
Sbjct: 173 YQKACFDR 180
>sp|POLN_AHEV|NON-STRUCTURAL polyprotein pORF1|Avian hepatitis E virus (isolate
Query: 1 FERACFDKSL 10
FER FDK +
Sbjct: 441 FERRVFDKRV 450
>sp|REP_CDDV1|REPLICATION-ASSOCIATED protein|Chaetoceros diatodnavirus 1 (Chaetoceros setoense
Query: 1 FERACFDK 8
F++AC DK
Sbjct: 186 FDQACADK 193
11|SequenceR|60|51|SRLAEFERAC
>sp|L_BUNLC|RNA-DIRECTED RNA polymerase L|Bunyavirus La Crosse
Query: 3 LAEFERAC 10
+ EFERAC
Sbjct: 1210 MKEFERAC 1217
>sp|L_BUNL8|RNA-DIRECTED RNA polymerase L|Bunyavirus La Crosse (isolate Human/United
Query: 3 LAEFERAC 10
+ EFERAC
Sbjct: 1210 MKEFERAC 1217
>sp|POLG_CILVC|RNA replication protein|Citrus leprosis virus C (isolate
Query: 1 SRLAEFER 8
SRL++FER
Sbjct: 600 SRLSQFER 607
>sp|POLG_HCVTR|GENOME polyprotein|Hepatitis C virus genotype 3b
Query: 2 RLAEFERAC 10
RL FE AC
Sbjct: 2513 RLLSFEEAC 2521
>sp|UNG_HHV2H|URACIL-DNA glycosylase|Human herpesvirus 2 (strain HG52)
Query: 3 LAEFERAC 10
LAE++R C
Sbjct: 60 LAEYDRRC 67
12|SequenceR|65|56|AAAFCSRLAE
>sp|RDRP_RBDVR|METHYLTRANSFERASE/HELICASE/RNA-DIRECTED RNA polymerase|Raspberry bushy dwarf virus (isolate
Query: 4 FCSRLAE 10
FC+RLA+
Sbjct: 957 FCNRLAD 963
>sp|POLG_HCVVN|GENOME polyprotein|Hepatitis C virus genotype 6d
Query: 1 AAAFCSRL 8
AAAFCS +
Sbjct: 268 AAAFCSAM 275
>sp|POLG_HCVIN|GENOME polyprotein|Hepatitis C virus genotype 1c
Query: 1 AAAFCSRL 8
AAAFCS +
Sbjct: 268 AAAFCSAM 275
>sp|POLG_HCVH9|GENOME polyprotein|Hepatitis C virus genotype 1c
Query: 1 AAAFCSRL 8
AAAFCS +
Sbjct: 268 AAAFCSAM 275
>sp|POLG_HCVVP|GENOME polyprotein|Hepatitis C virus genotype 6h
Query: 1 AAAFCSRL 8
AAAFCS +
Sbjct: 268 AAAFCSAM 275
>sp|POLG_HCVBK|GENOME polyprotein|Hepatitis C virus genotype 1b
Query: 1 AAAFCSRL 8
AAAFCS +
Sbjct: 268 AAAFCSAM 275
>sp|POLG_HCVTW|GENOME polyprotein|Hepatitis C virus genotype 1b
Query: 1 AAAFCSRL 8
AAAFCS +
Sbjct: 268 AAAFCSAM 275
>sp|POLG_HCVR6|GENOME polyprotein|Hepatitis C virus genotype 1b
Query: 1 AAAFCSRL 8
AAAFCS +
Sbjct: 268 AAAFCSAM 275
>sp|POLG_HCVJT|GENOME polyprotein|Hepatitis C virus genotype 1b
Query: 1 AAAFCSRL 8
AAAFCS +
Sbjct: 268 AAAFCSAM 275
13|SequenceR|74|61|CGGELTKKAAAAFC
>sp|MCP_PSHV1|MAJOR capsid protein|Psittacid herpesvirus 1 (isolate Amazon
Query: 1 CGGELTKKAAAA 12
CG L+ +AAAA
Sbjct: 626 CGAMLSSQAAAA 637
>sp|NCAP_IHNVW|NUCLEOPROTEIN hematopoietic necrosis virus (strain
Query: 1 CGGELTKKAAAAFC 14
GGE T+KA + C
Sbjct: 55 VGGEGTRKALSLLC 68
>sp|HN_PI2H|HEMAGGLUTININ-NEURAMINIDASE parainfluenza 2 virus (HPIV-2)
Query: 1 CGGELTKKAAAA 12
C G+ +++AAAA
Sbjct: 338 CAGKSSEQAAAA 349
>sp|VE6_HPV29|PROTEIN E6|Human papillomavirus 29
Query: 1 CGGELTKKAAAAFC 14
C ELT AAFC
Sbjct: 32 CTKELTSPELAAFC 45
>sp|POL_RTBVP|POLYPROTEIN P3|Rice tungro bacilliform virus (isolate
Query: 7 KKAAAAFC 14
KKA+ AFC
Sbjct: 726 KKASLAFC 733
>sp|DPOL_HHV1A|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain Angelotti)
Query: 2 GGELTKKAAAA 12
GGE K+ AAA
Sbjct: 647 GGEAPKRPAAA 657
>sp|DPOL_HHV1S|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain SC16)
Query: 2 GGELTKKAAAA 12
GGE K+ AAA
Sbjct: 647 GGEAPKRPAAA 657
>sp|DPOL_HHV1K|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain KOS)
Query: 2 GGELTKKAAAA 12
GGE K+ AAA
Sbjct: 647 GGEAPKRPAAA 657
>sp|DPOL_HHV11|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain 17)
Query: 2 GGELTKKAAAA 12
GGE K+ AAA
Sbjct: 647 GGEAPKRPAAA 657
>sp|POL_JEMBR|GAG-POL polyprotein|Jembrana disease virus (JDV)
Query: 2 GGELTKKAAAAF 13
GG+ KAAAA+
Sbjct: 969 GGKKGSKAAAAY 980
>sp|HN_PI2HT|HEMAGGLUTININ-NEURAMINIDASE parainfluenza 2 virus (strain
Query: 1 CGGELTKKAAAA 12
C G +++AAAA
Sbjct: 338 CAGNSSEQAAAA 349
>sp|POLN_CHIKS|POLYPROTEIN P1234|Chikungunya virus (strain S27-African prototype)
Query: 5 LTKKAAAAF 13
LTK A AAF
Sbjct: 2318 LTKSACAAF 2326
>sp|POLG_SBMVG|GENOME polyprotein|Soybean mosaic virus (strain G2)
Query: 3 GELTKKAAA 11
G+LTK+ AA
Sbjct: 840 GQLTKRVAA 848
>sp|MVP_SBMVG|P3N-PIPO polyprotein|Soybean mosaic virus (strain G2)
Query: 3 GELTKKAAA 11
G+LTK+ AA
Sbjct: 840 GQLTKRVAA 848
>sp|PRIM_BPP4|PUTATIVE P4-specific DNA primase|Enterobacteria phage P4 (Bacteriophage P4)
Query: 2 GGELTKKA 9
GGE T+KA
Sbjct: 299 GGEATRKA 306
>sp|VNUA_SUHVK|PROBABLE nuclear antigen|Suid herpesvirus 1 (strain Kaplan)
Query: 2 GGELTKKAAAA 12
GGE ++AAAA
Sbjct: 743 GGEQRREAAAA 753
THE END