NDUF2_HUMAN Blast OutputR
Archaea
1|SequenceR|10|1|ARFLDQSWGM

>sp|TRUD2_METJA|PROBABLE tRNA pseudouridine synthase D|Methanocaldococcus jannaschii (strain

Query: 2 RFLDQSWG 9
RF+D++WG
Sbjct: 212 RFIDKNWG 219


>sp|ASSY_HYPBU|ARGININOSUCCINATE synthase|Hyperthermus butylicus (strain DSM 5456

Query: 2 RFLDQSW 8
R LDQ W
Sbjct: 297 RILDQEW 303


>sp|TRUD1_METMP|PROBABLE tRNA pseudouridine synthase D|Methanococcus maripaludis (strain DSM

Query: 2 RFLDQSWG 9
RF+ ++WG
Sbjct: 187 RFIAKNWG 194


>sp|SYS_PYRHO|SERINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 RFLDQSWG 9
RFL+QS G
Sbjct: 141 RFLEQSQG 148


>sp|SECY_HALVD|PROTEIN translocase subunit SecY|Haloferax volcanii (strain ATCC 29605

Query: 1 ARFLDQSW 8
RFL+ SW
Sbjct: 309 GRFLNSSW 316


>sp|SYS_PYRAB|SERINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 RFLDQSWG 9
RFL+QS G
Sbjct: 141 RFLEQSQG 148


>sp|GLMM_METVS|PHOSPHOGLUCOSAMINE mutase|Methanococcus vannielii (strain ATCC 35089

Query: 3 FLDQSW 8
FLD SW
Sbjct: 124 FLDPSW 129


>sp|DGGGP_THESM|DIGERANYLGERANYLGLYCERYL phosphate synthase|Thermococcus sibiricus (strain DSM 12597

Query: 3 FLDQSWG 9
FL+ SWG
Sbjct: 47 FLECSWG 53


>sp|ATGT_HALMA|TRNA-GUANINE(15) transglycosylase|Haloarcula marismortui (strain ATCC 43049

Query: 5 DQSWGM 10
D+SWG+
Sbjct: 408 DESWGV 413


>sp|PURL_IGNH4|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 FLDQSWG 9
FLD WG
Sbjct: 444 FLDPLWG 450


>sp|SYL_HALSA|LEUCINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 3 FLDQSW 8
FLD SW
Sbjct: 488 FLDSSW 493




2|SequenceR|15|6|LSRWLARFLD

>sp|DPOL_THEHY|DNA polymerase|Thermococcus hydrothermalis

Query: 1 LSRWLARFL 9
LS+WLARF+
Sbjct: 1252 LSKWLARFM 1260


>sp|DABA_NATPD|PROBABLE inorganic carbon transporter subunit|Natronomonas pharaonis (strain

Query: 1 LSRWLARFLD 10
LS+WLA +LD
Sbjct: 124 LSKWLAAYLD 133


>sp|DABA_HALMA|PROBABLE inorganic carbon transporter subunit|Haloarcula marismortui (strain

Query: 1 LSRWLARFLD 10
L++WL+ FLD
Sbjct: 119 LTKWLSAFLD 128


>sp|SYS2_METMP|TYPE-2 serine--tRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 LSRWLARFL 9
LSRWL FL
Sbjct: 475 LSRWLIGFL 483


>sp|Y612_METJA|PROBABLE arogenate/prephenate dehydrogenase|Methanocaldococcus jannaschii

Query: 1 LSRWLARFL 9
L +W AR+L
Sbjct: 17 LGKWFARYL 25


>sp|KAE1B_HALMA|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 LSRWLARFLD 10
+ RWLAR D
Sbjct: 444 VGRWLARIHD 453


>sp|Y51B_METJA|UNCHARACTERIZED polyferredoxin-like protein MJ0514.2|Methanocaldococcus

Query: 3 RWLARFLD 10
+W+ RF+D
Sbjct: 18 KWIKRFID 25


>sp|DABA_HALWD|PROBABLE inorganic carbon transporter subunit|Haloquadratum walsbyi (strain

Query: 3 RWLARFLD 10
+WL+ FLD
Sbjct: 190 KWLSAFLD 197


>sp|RL18_METS5|LARGE ribosomal subunit protein uL18|Metallosphaera sedula (strain ATCC

Query: 1 LSRWLARFLD 10
SR+LAR LD
Sbjct: 166 FSRYLARGLD 175


>sp|GGR3_METST|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 3|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 RWLARFLD 10
RW+AR +D
Sbjct: 65 RWIARKID 72


>sp|CYAS_METB6|CYSTEATE synthase|Methanoregula boonei (strain DSM 21154

Query: 1 LSRWLARF 8
LSRW+A +
Sbjct: 416 LSRWVAHY 423


>sp|SYS2_META3|TYPE-2 serine--tRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 LSRWLARFL 9
LSRW+ FL
Sbjct: 481 LSRWVIGFL 489


>sp|METK_PYRNV|S-ADENOSYLMETHIONINE synthase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 LSRWLARFL 9
+S W++R+L
Sbjct: 35 ISEWVSRYL 43


>sp|METK_PYRIL|S-ADENOSYLMETHIONINE synthase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 LSRWLARFL 9
+S W++R+L
Sbjct: 35 ISEWVSRYL 43


>sp|METK_PYRCJ|S-ADENOSYLMETHIONINE synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 LSRWLARFL 9
+S W++R+L
Sbjct: 35 ISEWVSRYL 43


>sp|SYH_METKA|HISTIDINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 3 RWLARFL 9
RWL R+L
Sbjct: 26 RWLERYL 32


>sp|BIOY_PYRHO|PROBABLE biotin transporter BioY|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 WLARFL 9
WLARF+
Sbjct: 122 WLARFV 127


>sp|ARCH_THEKO|PROTEIN archease|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 RWLARFL 9
RW+A+F+
Sbjct: 133 RWMAQFV 139


>sp|SYS2_METTH|TYPE-2 serine--tRNA ligase|Methanothermobacter thermautotrophicus (strain

Query: 1 LSRWLARFL 9
LSRW+ FL
Sbjct: 472 LSRWIYGFL 480


>sp|KAE1B_METLZ|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 LSRWLARFLD 10
+ RW +F D
Sbjct: 113 IGRWYTKFAD 122


>sp|Y1409_METJA|UNCHARACTERIZED protein MJ1409|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LSRWLARFLD 10
LSR+ +RFL+
Sbjct: 210 LSRFKSRFLE 219


>sp|ARCH_THEGJ|PROTEIN archease|Thermococcus gammatolerans (strain DSM 15229

Query: 3 RWLARFL 9
RW+A+F+
Sbjct: 133 RWMAQFV 139


>sp|RGYRB_METKA|REVERSE gyrase subunit B|Methanopyrus kandleri (strain AV19 /

Query: 1 LSRWLARFL 9
+ RWLAR +
Sbjct: 614 VDRWLARHV 622




3|SequenceR|20|11|KVERSLSRWL

>sp|UPP_PYRAE|URACIL phosphoribosyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 VERSLSRW 9
+ER LSRW
Sbjct: 170 IERVLSRW 177


>sp|METK_METS3|S-ADENOSYLMETHIONINE synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 KVERSLSRWL 10
KVE+ + RWL
Sbjct: 374 KVEQIVDRWL 383


>sp|TRI_THEVO|TRICORN protease|Thermoplasma volcanium (strain ATCC 51530

Query: 2 VERSLSRW 9
VER ++RW
Sbjct: 682 VERCVTRW 689


>sp|ILVD_METST|DIHYDROXY-ACID dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 VERSLSRWL 10
VER+L WL
Sbjct: 524 VERNLKGWL 532


>sp|CBID_META3|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 VERSLSRW 9
VER SRW
Sbjct: 348 VERVSSRW 355


>sp|IF2P_THEKO|PROBABLE translation initiation factor IF-2|Thermococcus kodakarensis

Query: 1 KVERSLSRW 9
KVER++ RW
Sbjct: 178 KVERNVFRW 186


>sp|PYRC_SULAC|DIHYDROOROTASE acidocaldarius (strain ATCC 33909

Query: 1 KVERSLSR--WL 10
K+ERSL R W+
Sbjct: 166 KIERSLRRSYWM 177


>sp|CBID_METM7|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanococcus maripaludis (strain C7 /

Query: 2 VERSLSRW 9
VER SRW
Sbjct: 336 VERLSSRW 343


>sp|SYM_THEVO|METHIONINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 VERSLSRWL 10
++RSL+ WL
Sbjct: 438 IKRSLAIWL 446


>sp|DABA_NATPD|PROBABLE inorganic carbon transporter subunit|Natronomonas pharaonis (strain

Query: 4 RSLSRWL 10
R LS+WL
Sbjct: 122 RVLSKWL 128


>sp|ARCH_METKA|PROTEIN archease|Methanopyrus kandleri (strain AV19 /

Query: 1 KVERSLSRWL 10
KVER RW+
Sbjct: 124 KVEREDGRWV 133




4|SequenceR|25|16|TGVHEKVERS

>sp|ENO2_METHJ|ENOLASE 2|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 TGVHEKVER 9
TG+HE VER
Sbjct: 44 TGIHEAVER 52


>sp|RL4_THEAC|LARGE ribosomal subunit protein uL4|Thermoplasma acidophilum (strain ATCC

Query: 2 GVHEKVERS 10
GV+E +ERS
Sbjct: 166 GVYEDIERS 174


>sp|Y1302_METJA|UNCHARACTERIZED polyferredoxin-like protein MJ1302|Methanocaldococcus jannaschii

Query: 1 TGVHEKVER 9
TG++E +ER
Sbjct: 17 TGIYENLER 25


>sp|GGGPS_THEKO|GERANYLGERANYLGLYCERYL phosphate synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 TGVHEKVER 9
T +HEK+ER
Sbjct: 9 TYIHEKLER 17


>sp|Y887_METTH|UPF0104 membrane protein MTH_887|Methanothermobacter thermautotrophicus

Query: 2 GVHEKV 7
G+HEKV
Sbjct: 218 GIHEKV 223


>sp|ENO_META3|ENOLASE aeolicus (strain ATCC BAA-1280

Query: 1 TGVHEKVE 8
TG HE VE
Sbjct: 45 TGTHEAVE 52


>sp|ENO1_METHJ|ENOLASE 1|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 TGVHEKVER 9
TG HE +E+
Sbjct: 43 TGTHEAIEK 51


>sp|RL3_NATPD|LARGE ribosomal subunit protein uL3|Natronomonas pharaonis (strain ATCC

Query: 3 VHEKVERS 10
VHE +ERS
Sbjct: 106 VHEDLERS 113


>sp|G1PDH_METJA|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanocaldococcus jannaschii (strain ATCC

Query: 1 TGVHEKVERS 10
+G+HEK++ S
Sbjct: 270 SGLHEKIKMS 279


>sp|SYE_METLZ|GLUTAMATE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 3 VHEKVERS 10
+HEK ERS
Sbjct: 82 MHEKKERS 89


>sp|ENO_PYRHO|ENOLASE horikoshii (strain ATCC 700860

Query: 1 TGVHEKVE 8
TG HE VE
Sbjct: 45 TGTHEAVE 52


>sp|GUAAB_HALMA|GMP synthase [glutamine-hydrolyzing] subunit B|Haloarcula marismortui

Query: 1 TGVHEKVER 9
TG HE V R
Sbjct: 281 TGAHENVAR 289


>sp|RL4_HALSA|LARGE ribosomal subunit protein uL4|Halobacterium salinarum (strain ATCC

Query: 2 GVHEKVERS 10
GVH +ER+
Sbjct: 162 GVHADIERA 170


>sp|RL4_HALS3|LARGE ribosomal subunit protein uL4|Halobacterium salinarum (strain ATCC

Query: 2 GVHEKVERS 10
GVH +ER+
Sbjct: 162 GVHADIERA 170


>sp|ENO_PYRAB|ENOLASE abyssi (strain GE5 /

Query: 1 TGVHEKVE 8
TG HE VE
Sbjct: 45 TGTHEAVE 52


>sp|TRUB_THEAC|PROBABLE tRNA pseudouridine synthase B|Thermoplasma acidophilum (strain ATCC

Query: 1 TGVHEKVERS 10
+G+H+ ++RS
Sbjct: 302 SGLHKDIQRS 311




5|SequenceR|30|21|NGFQDTGVHE

>sp|ASSY_HYPBU|ARGININOSUCCINATE synthase|Hyperthermus butylicus (strain DSM 5456

Query: 1 NGFQDTGVHE 10
NGFQ G+H+
Sbjct: 159 NGFQPPGLHK 168


>sp|KPTA_METKA|PROBABLE RNA 2'-phosphotransferase|Methanopyrus kandleri (strain AV19 /

Query: 2 GFQDTGVHE 10
GF D VHE
Sbjct: 61 GFTDCDVHE 69


>sp|AATF_THESM|A-TYPE ATP synthase subunit F|Thermococcus sibiricus (strain DSM 12597

Query: 2 GFQDTGVHE 10
GF+ GVHE
Sbjct: 14 GFRLAGVHE 22


>sp|AATF_THEKO|A-TYPE ATP synthase subunit F|Thermococcus kodakarensis (strain ATCC

Query: 2 GFQDTGVHE 10
GF+ GVHE
Sbjct: 14 GFRLAGVHE 22


>sp|AATF_PYRFU|A-TYPE ATP synthase subunit F|Pyrococcus furiosus (strain ATCC 43587

Query: 2 GFQDTGVHE 10
GF+ GVHE
Sbjct: 14 GFRLAGVHE 22


>sp|AATF_PYRAB|A-TYPE ATP synthase subunit F|Pyrococcus abyssi (strain GE5 /

Query: 2 GFQDTGVHE 10
GF+ GVHE
Sbjct: 14 GFRLAGVHE 22


>sp|PDXT_METTH|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Methanothermobacter

Query: 4 QDTGVHE 10
+DTG+HE
Sbjct: 175 EDTGLHE 181


>sp|AATF_PYRHO|A-TYPE ATP synthase subunit F|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GFQDTGVHE 10
GF+ G+HE
Sbjct: 14 GFRLAGIHE 22


>sp|FBPAP_IGNH4|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 FQDTGVH 9
F+D GVH
Sbjct: 175 FEDKGVH 181


>sp|KADA_META3|ADENYLATE kinase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 NGFQDTGVHE 10
NG D GV E
Sbjct: 177 NGLLDEGVEE 186


>sp|MFND_METFA|TYRAMINE--L-GLUTAMATE ligase|Methanocaldococcus fervens (strain DSM 4213

Query: 1 NGFQDTGVHE 10
+GF+D G+ E
Sbjct: 11 SGFEDEGILE 20




6|SequenceR|35|26|IYYYKNGFQD

>sp|DHYS_PYRHO|PROBABLE deoxyhypusine synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 YYYKNGFQ 9
YYY+ GFQ
Sbjct: 36 YYYRIGFQ 43


>sp|PAIA_THEAC|SPERMIDINE N(1)-acetyltransferase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 YYYKNGFQ 9
+YYKNGF+
Sbjct: 137 FYYKNGFK 144


>sp|CARB_PYRAE|CARBAMOYL phosphate synthase large chain|Pyrobaculum aerophilum (strain ATCC

Query: 2 YYYKNG 7
+YYKNG
Sbjct: 1012 WYYKNG 1017


>sp|KAE1_IGNH4|TRNA N6-adenosine threonylcarbamoyltransferase|Ignicoccus hospitalis

Query: 1 IYYYKNGF 8
+ YYK+GF
Sbjct: 299 LLYYKHGF 306


>sp|DHYS_THEON|PROBABLE deoxyhypusine synthase|Thermococcus onnurineus (strain NA1)

Query: 2 YYYKNGFQ 9
YY++ GFQ
Sbjct: 37 YYHRIGFQ 44


>sp|RFCS_PYRAB|REPLICATION factor C small subunit|Pyrococcus abyssi (strain GE5 /

Query: 2 YYYKNGFQD 10
Y++ NG+ D
Sbjct: 188 YFFGNGYTD 196


>sp|NADE_METBU|NH(3)-DEPENDENT NAD(+) synthetase|Methanococcoides burtonii (strain DSM 6242

Query: 1 IYYYKNGF 8
+YYY N F
Sbjct: 120 LYYYANMF 127


>sp|Y231_METJA|UNCHARACTERIZED protein MJ0231|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YYYKNG 7
YYYKNG
Sbjct: 365 YYYKNG 370


>sp|OTC_ARCFU|ORNITHINE carbamoyltransferase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 IYYYKNGFQD 10
IY Y+ F+D
Sbjct: 140 IYEYRGDFKD 149


>sp|Y1725_METS5|PUTATIVE HTH-type transcriptional regulatory protein|Metallosphaera sedula

Query: 1 IYYYKNGFQD 10
IY Y+NG D
Sbjct: 150 IYDYENGESD 159


>sp|TMCA_PYRAB|TRNA(MET) cytidine acetyltransferase TmcA|Pyrococcus abyssi (strain GE5 /

Query: 2 YYYKNGFQD 10
YYYK+ +D
Sbjct: 803 YYYKHMLKD 811


>sp|DHYS_PYRAB|PROBABLE deoxyhypusine synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 YYYKNGFQ 9
YY K GFQ
Sbjct: 36 YYEKIGFQ 43


>sp|AATA_PYRFU|A-TYPE ATP synthase subunit A|Pyrococcus furiosus (strain ATCC 43587

Query: 1 IYYYKNG 7
+Y YKNG
Sbjct: 288 VYGYKNG 294


>sp|SMC_THEAC|CHROMOSOME partition protein Smc|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 YYYKNGFQ 9
YYY NG +
Sbjct: 104 YYYVNGVR 111


>sp|NIFE_METMI|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanococcus

Query: 4 YKNGF 8
YKNGF
Sbjct: 117 YKNGF 121


>sp|NIFE_METMP|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanococcus

Query: 4 YKNGF 8
YKNGF
Sbjct: 117 YKNGF 121


>sp|T1RH_METJA|PUTATIVE type I restriction enzyme|Methanocaldococcus jannaschii (strain

Query: 2 YYYKNG 7
YYY+NG
Sbjct: 157 YYYENG 162


>sp|MTHT_METTF|TYPE II methyltransferase M.MthTI|Methanothermobacter thermautotrophicus

Query: 1 IYYYKN 6
I+YYKN
Sbjct: 292 IFYYKN 297


>sp|Y3532_METJA|UNCHARACTERIZED protein MJECL32|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 IYYYKNG 7
IYY KNG
Sbjct: 93 IYYTKNG 99


>sp|CYDE_METM6|L-CYSTEINE desulfidase|Methanococcus maripaludis (strain C6 /

Query: 3 YYKNG 7
YYKNG
Sbjct: 304 YYKNG 308


>sp|T1S1_METJA|TYPE I restriction enzyme MjaVII|Methanocaldococcus jannaschii (strain

Query: 3 YYKNG 7
YYKNG
Sbjct: 45 YYKNG 49


>sp|PUR1_METJA|AMIDOPHOSPHORIBOSYLTRANSFERASE jannaschii (strain ATCC 43067

Query: 1 IYYYKN 6
I+YYKN
Sbjct: 44 IHYYKN 49


>sp|TMCA_PYRFU|TRNA(MET) cytidine acetyltransferase TmcA|Pyrococcus furiosus (strain ATCC

Query: 2 YYYKNGFQD 10
YYYK+ +D
Sbjct: 803 YYYKHLIKD 811


>sp|Y952_PYRAE|UPF0215 protein PAE0952|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 IYYYKNGFQ 9
+YY K+G++
Sbjct: 125 VYYTKSGYK 133


>sp|SYD_PYRAB|ASPARTATE--TRNA(ASP) ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 YYYKNGF 8
++YK GF
Sbjct: 150 FFYKEGF 156


>sp|BIOW_METM5|6-CARBOXYHEXANOATE--COA ligase|Methanococcus maripaludis (strain C5 /

Query: 2 YYYKNG 7
YY KNG
Sbjct: 94 YYLKNG 99


>sp|BIOW_METM7|6-CARBOXYHEXANOATE--COA ligase|Methanococcus maripaludis (strain C7 /

Query: 2 YYYKNG 7
YY KNG
Sbjct: 94 YYLKNG 99


>sp|BIOW_METM6|6-CARBOXYHEXANOATE--COA ligase|Methanococcus maripaludis (strain C6 /

Query: 2 YYYKNG 7
YY KNG
Sbjct: 94 YYLKNG 99


>sp|CYDE_METM7|L-CYSTEINE desulfidase|Methanococcus maripaludis (strain C7 /

Query: 3 YYKNG 7
YYKNG
Sbjct: 304 YYKNG 308


>sp|Y1241_METJA|UNCHARACTERIZED protein MJ1241|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YYYKNGFQD 10
+Y K GF+D
Sbjct: 9 WYVKRGFED 17


>sp|CYDE_METMP|L-CYSTEINE desulfidase|Methanococcus maripaludis (strain DSM 14266

Query: 3 YYKNG 7
YYKNG
Sbjct: 303 YYKNG 307


>sp|PRIS_METBU|DNA primase small subunit PriS|Methanococcoides burtonii (strain DSM

Query: 2 YYYKNGFQD 10
YY K+ FQ+
Sbjct: 7 YYLKSKFQE 15


>sp|DHYS_METJA|PROBABLE deoxyhypusine synthase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 YYYKNGFQ 9
YY K GFQ
Sbjct: 31 YYLKIGFQ 38


>sp|AROC_METVS|CHORISMATE synthase|Methanococcus vannielii (strain ATCC 35089

Query: 2 YYYKNG 7
+Y+KNG
Sbjct: 277 FYFKNG 282




7|SequenceR|40|31|NKYQPIYYYK

>sp|Y2121_METS5|PROTEIN Msed_2121|Metallosphaera sedula (strain ATCC 51363

Query: 5 PIYYYK 10
P+YYY+
Sbjct: 176 PVYYYE 181


>sp|THI4_METBF|THIAMINE thiazole synthase|Methanosarcina barkeri (strain Fusaro /

Query: 2 KYQPIYY 8
+YQP YY
Sbjct: 93 EYQPGYY 99


>sp|PURT_METJA|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanocaldococcus

Query: 1 NKYQPIYY 8
NKY P Y+
Sbjct: 329 NKYAPKYH 336


>sp|EF2_PYRAR|ELONGATION factor 2|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 NKYQPIYYY 9
NK+ +Y+Y
Sbjct: 489 NKHNKLYFY 497


>sp|TMBL2_PYRFU|PUTATIVE HTH-type transcriptional regulator TrmBL2|Pyrococcus furiosus

Query: 1 NKYQPIY 7
NKY+P++
Sbjct: 70 NKYRPVH 76


>sp|EF2_PYRNV|ELONGATION factor 2|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 NKYQPIYYY 9
NK+ +Y+Y
Sbjct: 489 NKHNRLYFY 497


>sp|COFH_METJA|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanocaldococcus jannaschii (strain

Query: 1 NKYQPIY 7
+KY PIY
Sbjct: 250 HKYAPIY 256


>sp|EF2_PYRCJ|ELONGATION factor 2|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 NKYQPIYYY 9
NK+ +Y+Y
Sbjct: 489 NKHNRLYFY 497




8|SequenceR|45|36|TQGRWNKYQP

>sp|NPD_PYRAB|NAD-DEPENDENT protein deacylase|Pyrococcus abyssi (strain GE5 /

Query: 3 GRWNKYQP 10
G WNKY+P
Sbjct: 37 GLWNKYRP 44


>sp|NPD_SULAC|NAD-DEPENDENT protein deacetylase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 QGRWNKYQP 10
QG W KY P
Sbjct: 41 QGLWKKYSP 49


>sp|NPD_SACS2|NAD-DEPENDENT protein deacetylase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 QGRWNKYQP 10
QG W KY P
Sbjct: 37 QGLWKKYSP 45


>sp|NPD_METKA|NAD-DEPENDENT protein deacylase|Methanopyrus kandleri (strain AV19 /

Query: 3 GRWNKYQP 10
G WNKY P
Sbjct: 38 GLWNKYDP 45


>sp|GYAR_AERPE|GLYOXYLATE reductase|Aeropyrum pernix (strain ATCC 700893

Query: 5 WNKYQP 10
W+KYQP
Sbjct: 29 WDKYQP 34


>sp|NPD1_ARCFU|NAD-DEPENDENT protein deacylase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 GRWNKYQP 10
G WN+Y+P
Sbjct: 37 GLWNRYRP 44


>sp|ARSR_HALSA|PUTATIVE arsenical resistance operon repressor|Halobacterium salinarum

Query: 3 GRWNKYQ 9
G+W KYQ
Sbjct: 106 GKWRKYQ 112


>sp|Y1519_METJA|UNCHARACTERIZED protein MJ1519|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 RWNKYQ 9
+WNKYQ
Sbjct: 927 KWNKYQ 932


>sp|NPD_PYRHO|NAD-DEPENDENT protein deacylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 GRWNKYQP 10
G W KY+P
Sbjct: 37 GLWKKYRP 44


>sp|NPD_SULTO|NAD-DEPENDENT protein deacetylase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 GRWNKYQP 10
G W KY P
Sbjct: 38 GLWKKYSP 45


>sp|NPD2_ARCFU|NAD-DEPENDENT protein deacylase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 GRWNKYQP 10
G W KY P
Sbjct: 40 GLWRKYDP 47


>sp|KCY_METMA|CYTIDYLATE kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 RWNKYQ 9
+WN+YQ
Sbjct: 159 KWNQYQ 164


>sp|KCY_METBF|CYTIDYLATE kinase|Methanosarcina barkeri (strain Fusaro /

Query: 4 RWNKYQ 9
+WN+YQ
Sbjct: 159 KWNQYQ 164


>sp|KCY_METAC|CYTIDYLATE kinase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 RWNKYQ 9
+WN+YQ
Sbjct: 159 KWNQYQ 164


>sp|RFCL_HALMA|REPLICATION factor C large subunit|Haloarcula marismortui (strain ATCC 43049

Query: 1 TQGRWNKYQP 10
T+G W +Y P
Sbjct: 318 TKGGWTRYGP 327


>sp|AROC_SULTO|CHORISMATE synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 RWNKY 8
RWNKY
Sbjct: 375 RWNKY 379


>sp|ARSR2_HALSA|PUTATIVE arsenical resistance operon repressor|Halobacterium salinarum

Query: 2 QGRWNKYQP 10
+G W Y+P
Sbjct: 92 EGSWRYYEP 100


>sp|RS8_AERPE|SMALL ribosomal subunit protein uS8|Aeropyrum pernix (strain ATCC

Query: 3 GRWNKYQ 9
GRW K++
Sbjct: 56 GRWGKFR 62


>sp|SYFA_METM5|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus maripaludis (strain C5 /

Query: 3 GRWNKY 8
G+WN Y
Sbjct: 209 GKWNDY 214


>sp|Y686_METJA|UNCHARACTERIZED protein MJ0686|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 RWNKYQP 10
+WN Y P
Sbjct: 340 KWNPYTP 346


>sp|Y1571_AERPE|UNCHARACTERIZED protein APE_1571.1|Aeropyrum pernix (strain ATCC 700893

Query: 2 QGRWNKY 8
+GRW +Y
Sbjct: 478 EGRWGEY 484


>sp|SYFA_METM7|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus maripaludis (strain C7 /

Query: 3 GRWNKY 8
G+WN Y
Sbjct: 209 GKWNDY 214


>sp|FLPA_HALMA|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Haloarcula marismortui (strain

Query: 1 TQGRWNKYQP 10
T G W ++ P
Sbjct: 30 TDGDWRRWDP 39


>sp|Y137_METJA|UNCHARACTERIZED protein MJ0137|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 TQGRWNKYQP 10
T+GRW P
Sbjct: 225 TEGRWTHDYP 234


>sp|PELO_SACI7|PROTEIN pelota homolog|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 4 RWNKY 8
+WNKY
Sbjct: 109 QWNKY 113


>sp|PELO_SACI2|PROTEIN pelota homolog|Saccharolobus islandicus (strain L.S.2.15 /

Query: 4 RWNKY 8
+WNKY
Sbjct: 109 QWNKY 113


>sp|PELO_SACI1|PROTEIN pelota homolog|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 4 RWNKY 8
+WNKY
Sbjct: 109 QWNKY 113


>sp|NPD2_PYRAE|NAD-DEPENDENT protein deacylase 2|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 GRWNKYQP 10
G W +Y+P
Sbjct: 35 GLWERYKP 42


>sp|SYFA_SACS2|PHENYLALANINE--TRNA ligase alpha subunit|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 GRWNKYQ 9
G W KY+
Sbjct: 191 GEWKKYK 197


>sp|RFCL_HALLT|REPLICATION factor C large subunit|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 TQGRWNKY 8
T+G W +Y
Sbjct: 329 TKGGWTRY 336


>sp|RFCL_SULAC|REPLICATION factor C large subunit|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 QGRWNKYQ 9
+ RW KYQ
Sbjct: 330 KARWVKYQ 337




9|SequenceR|50|41|RKERITQGRW

>sp|CDC61_METTH|ORC1-TYPE DNA replication protein 1|Methanothermobacter thermautotrophicus

Query: 1 RKERITQGRW 10
RKE IT GR
Sbjct: 309 RKEEITSGRL 318


>sp|DPO4_SULTO|DNA polymerase IV|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 KERITQGRW 10
KER+ GR+
Sbjct: 240 KERVPHGRY 248


>sp|DNAK_METAR|CHAPERONE protein DnaK|Methanocella arvoryzae (strain DSM 22066

Query: 1 RKERITQG 8
+KER+T+G
Sbjct: 532 QKERVTKG 539


>sp|ARCH_PYRFU|PROTEIN archease|Pyrococcus furiosus (strain ATCC 43587

Query: 3 ERITQGRW 10
ER+ GRW
Sbjct: 127 ERLPDGRW 134


>sp|NDRZ_PYRFU|VITAMIN B12-dependent ribonucleoside-diphosphate reductase|Pyrococcus

Query: 3 ERITQGRW 10
ERI+ G+W
Sbjct: 673 ERISLGQW 680




10|SequenceR|55|46|AAEVIRKERI

>sp|BSUHB_ARCFU|FRUCTOSE-1,6-BISPHOSPHATASE/INOSITOL-1-MONOPHOSPHATASE fulgidus (strain ATCC 49558

Query: 1 AAEVIRKERI 10
A E++RKER+
Sbjct: 53 ALEILRKERV 62


>sp|PYRG_SULAC|CTP synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 EVIRKER 9
EVIRKER
Sbjct: 97 EVIRKER 103


>sp|DPO4_METS5|DNA polymerase IV|Metallosphaera sedula (strain ATCC 51363

Query: 2 AEVIRKERI 10
AEV+ KER+
Sbjct: 130 AEVLEKERL 138




11|SequenceR|60|51|VEKKNAAEVI

***** No hits found ******


12|SequenceR|65|56|GAEYDVEKKN

>sp|KITH_PYRAE|THYMIDINE kinase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GAEYDV 6
GAEYDV
Sbjct: 74 GAEYDV 79


>sp|TMCA_METKA|TRNA(MET) cytidine acetyltransferase TmcA|Methanopyrus kandleri (strain AV19

Query: 1 GAEYDVEKKN 10
G EYDVE+ +
Sbjct: 334 GVEYDVERDD 343


>sp|SYT_PYRAR|THREONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 GAEYDVEKKN 10
GAEYD K N
Sbjct: 160 GAEYDPAKFN 169


>sp|RTCB_METKA|TRNA-SPLICING ligase RtcB|Methanopyrus kandleri (strain AV19 /

Query: 1 GAEYDVEKK 9
G EYD EKK
Sbjct: 448 GYEYDPEKK 456


>sp|CBIN_METVS|COBALT transport protein CbiN|Methanococcus vannielii (strain ATCC 35089

Query: 2 AEYDVEKKN 10
A+YD E KN
Sbjct: 91 AKYDFESKN 99


>sp|SYFB_PYRFU|PHENYLALANINE--TRNA ligase beta subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GAEYDVEK 8
G EYD+E+
Sbjct: 496 GIEYDIEE 503




13|SequenceR|70|61|ETPIDGAEYD

>sp|PYRC_SULAC|DIHYDROOROTASE acidocaldarius (strain ATCC 33909

Query: 1 ETPIDGAEYD 10
ETP+DG D
Sbjct: 346 ETPMDGFSLD 355


>sp|SYT_PYRAR|THREONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 5 DGAEYD 10
DGAEYD
Sbjct: 159 DGAEYD 164


>sp|SYDND_METTH|ASPARTATE--TRNA(ASP/ASN) ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 ETPIDGAEYD 10
ETP + EYD
Sbjct: 281 ETPFERLEYD 290


>sp|TBP_METTP|TATA-BOX-BINDING protein|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 ETPIDGAEYD 10
E+ ++GAEY+
Sbjct: 26 ESELEGAEYN 35


>sp|ARNS_SULAC|SERINE/THREONINE-PROTEIN kinase ArnS|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 TPIDGAEYD 10
+P+DG Y+
Sbjct: 197 SPVDGVPYE 205


>sp|HYPA_METKA|HYDROGENASE maturation factor HypA|Methanopyrus kandleri (strain AV19 /

Query: 2 TPIDGAEYD 10
TP++GA+++
Sbjct: 55 TPVEGAKFE 63


>sp|TBP3_METMA|TATA-BOX-BINDING protein 3|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 ETPIDGAEYD 10
E+ ++GAEY+
Sbjct: 27 ESGLEGAEYN 36


>sp|SYFB_METKA|PHENYLALANINE--TRNA ligase beta subunit|Methanopyrus kandleri (strain AV19 /

Query: 1 ETPIDGAEYD 10
E P+ G E+D
Sbjct: 571 EVPVVGGEFD 580


>sp|PCNA_NANEQ|DNA polymerase sliding clamp|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 ETPIDGAEYD 10
ETPI EY+
Sbjct: 122 ETPIPSLEYN 131


>sp|Y557_PICTO|PUTATIVE HTH-type transcriptional regulatory protein|Picrophilus torridus

Query: 1 ETPIDGAEYD 10
++P DG YD
Sbjct: 225 KSPFDGFSYD 234


>sp|RPE_METJA|RIBULOSE-PHOSPHATE 3-epimerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 TPIDGAEY 9
TP+D EY
Sbjct: 116 TPLDAIEY 123


>sp|TRM56_METTH|TRNA (cytidine(56)-2'-O)-methyltransferase|Methanothermobacter

Query: 4 IDGAEYD 10
+DGAE+D
Sbjct: 147 LDGAEFD 153


>sp|TBPF_HALSA|TATA-BOX-BINDING protein F|Halobacterium salinarum (strain ATCC 700922

Query: 2 TPIDGAEYD 10
T +DGAEY+
Sbjct: 30 TDLDGAEYN 38


>sp|TBP1_METMA|TATA-BOX-BINDING protein 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 ETPIDGAEYD 10
E+ +GAEY+
Sbjct: 27 ESEFEGAEYN 36


>sp|TBP1_METAC|TATA-BOX-BINDING protein 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 ETPIDGAEYD 10
E+ +GAEY+
Sbjct: 27 ESEFEGAEYN 36


>sp|TBP2_METMA|TATA-BOX-BINDING protein 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 ETPIDGAEYD 10
E+ +GAEY+
Sbjct: 27 ESQFEGAEYN 36


>sp|KCY_HALLT|CYTIDYLATE kinase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 ETPIDGAEYD 10
+ PI+G YD
Sbjct: 182 KAPIEGVSYD 191


>sp|SYG_PYRAB|GLYCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 ETPIDGA 7
+TPIDG
Sbjct: 535 QTPIDGT 541


>sp|PYRC_SACS2|DIHYDROOROTASE solfataricus (strain ATCC 35092

Query: 1 ETPIDG 6
ETP+DG
Sbjct: 349 ETPLDG 354


>sp|GVPD_HALMT|PROTEIN GvpD|Haloferax mediterranei (strain ATCC 33500

Query: 1 ETPIDGAEYD 10
E+P++G + D
Sbjct: 424 ESPVEGGQLD 433




14|SequenceR|75|66|IWAEWETPID

>sp|Y215_NITMS|MEMO1 family protein Nmar_0215|Nitrosopumilus maritimus (strain SCM1)

Query: 3 AEWETPI 9
A+WETP+
Sbjct: 95 AQWETPL 101


>sp|Y2219_SACI2|MEMO1 family protein LS215_2219|Saccharolobus islandicus (strain L.S.2.15

Query: 3 AEWETPI 9
EWETP+
Sbjct: 101 GEWETPL 107


>sp|Y066_SACS2|MEMO1 family protein SSO0066|Saccharolobus solfataricus (strain ATCC

Query: 3 AEWETPI 9
EWETP+
Sbjct: 101 GEWETPL 107


>sp|Y2180_SACI7|MEMO1 family protein YG5714_2180|Saccharolobus islandicus (strain

Query: 3 AEWETPI 9
EWETP+
Sbjct: 101 GEWETPL 107


>sp|Y739_SACI1|MEMO1 family protein YN1551_0739|Saccharolobus islandicus (strain

Query: 3 AEWETPI 9
EWETP+
Sbjct: 101 GEWETPL 107


>sp|Y2134_SACI3|MEMO1 family protein M1627_2134|Saccharolobus islandicus (strain M.16.27)

Query: 3 AEWETPI 9
EWETP+
Sbjct: 101 GEWETPL 107


>sp|Y2061_SACI6|MEMO1 family protein M164_2061|Saccharolobus islandicus (strain M.16.4 /

Query: 3 AEWETPI 9
EWETP+
Sbjct: 101 GEWETPL 107


>sp|Y2054_SACI4|MEMO1 family protein M1425_2054|Saccharolobus islandicus (strain M.14.25

Query: 3 AEWETPI 9
EWETP+
Sbjct: 101 GEWETPL 107


>sp|1A1D_PYRHO|PUTATIVE 1-aminocyclopropane-1-carboxylate deaminase|Pyrococcus horikoshii

Query: 5 WETPI 9
WETPI
Sbjct: 20 WETPI 24


>sp|1A1D_PYRFU|PUTATIVE 1-aminocyclopropane-1-carboxylate deaminase|Pyrococcus furiosus

Query: 5 WETPI 9
WETPI
Sbjct: 20 WETPI 24


>sp|1A1D_PYRAB|PUTATIVE 1-aminocyclopropane-1-carboxylate deaminase|Pyrococcus abyssi

Query: 5 WETPI 9
WETPI
Sbjct: 20 WETPI 24


>sp|Y2139_METS5|MEMO1 family protein Msed_2139|Metallosphaera sedula (strain ATCC 51363

Query: 1 IW--AEWETPI 9
IW +WETP+
Sbjct: 96 IWPGGDWETPL 106


>sp|RL7A_HALLT|LARGE ribosomal subunit protein eL8|Halorubrum lacusprofundi (strain

Query: 1 IWAEWETPID 10
++ ++ETP D
Sbjct: 3 VYVDYETPAD 12


>sp|G1PDH_IGNH4|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 IWAEW 5
+W+EW
Sbjct: 45 VWSEW 49


>sp|SYE_METHJ|GLUTAMATE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 5 WETPI 9
WETP+
Sbjct: 317 WETPV 321


>sp|ILVD_METKA|DIHYDROXY-ACID dehydratase|Methanopyrus kandleri (strain AV19 /

Query: 4 EWETPID 10
EWE P D
Sbjct: 520 EWEPPED 526


>sp|Y1182_METJA|UNCHARACTERIZED protein MJ1182|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 WETPID 10
W TPID
Sbjct: 206 WITPID 211


>sp|Y1638_PYRFU|MEMO1 family protein PF1638|Pyrococcus furiosus (strain ATCC 43587

Query: 3 AEWETPI 9
EWETP+
Sbjct: 91 GEWETPL 97


>sp|Y237_THEAC|MEMO1 family protein Ta0237|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 AEWETPI 9
EW TP+
Sbjct: 89 GEWSTPL 95


>sp|Y1383_THEVO|MEMO1 family protein TV1383|Thermoplasma volcanium (strain ATCC 51530

Query: 3 AEWETPI 9
WETP+
Sbjct: 89 GSWETPL 95


>sp|UPPP_KORCO|UNDECAPRENYL-DIPHOSPHATASE cryptofilum (strain OPF8)

Query: 2 WAEWETPID 10
WA E P+D
Sbjct: 137 WAGGERPLD 145


>sp|GLNA_PYRWO|GLUTAMINE synthetase|Pyrococcus woesei

Query: 2 WAEWETPID 10
W EWE+ ++
Sbjct: 406 WKEWESYLE 414


>sp|AROE_THEKO|SHIKIMATE dehydrogenase (NADP(+))|Thermococcus kodakarensis (strain ATCC

Query: 5 WETPI 9
WETP+
Sbjct: 196 WETPV 200


>sp|SYI_METBF|ISOLEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 IWAEWETP 8
+W +WE P
Sbjct: 140 VWMQWEAP 147


>sp|Y1357_DESA1|MEMO1 family protein DKAM_1357|Desulfurococcus amylolyticus (strain DSM

Query: 5 WETPI 9
WETP+
Sbjct: 103 WETPL 107


>sp|SYI_ARCFU|ISOLEUCINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 IWAEWETP 8
+W +WE P
Sbjct: 135 VWMDWENP 142


>sp|GLNA_PYRFU|GLUTAMINE synthetase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 WAEWETPID 10
W EWE+ ++
Sbjct: 406 WKEWESYLE 414


>sp|Y1590_CALMQ|MEMO1 family protein Cmaq_1590|Caldivirga maquilingensis (strain ATCC

Query: 5 WETPI 9
WETP+
Sbjct: 102 WETPL 106


>sp|TRUA_METMA|TRNA pseudouridine synthase A|Methanosarcina mazei (strain ATCC

Query: 1 IWAEWETPID 10
+WA E P D
Sbjct: 90 VWAHAEVPYD 99


>sp|Y062_PYRAR|MEMO1 family protein Pars_0062|Pyrobaculum arsenaticum (strain DSM 13514

Query: 5 WETPI 9
WETP+
Sbjct: 101 WETPL 105


>sp|Y818_PYRAE|MEMO1 family protein PAE0818|Pyrobaculum aerophilum (strain ATCC 51768

Query: 5 WETPI 9
WETP+
Sbjct: 101 WETPL 105




15|SequenceR|80|71|KRTRRIWAEW

>sp|PCKG_SULAC|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 KRTRRIWAEW 10
K +R+W +W
Sbjct: 491 KEDKRVWVKW 500


>sp|PCKG_SULTO|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 KRTRRIWAEW 10
K +R+W +W
Sbjct: 492 KEDKRVWIKW 501


>sp|PTH_SULAC|PEPTIDYL-TRNA hydrolase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 KRTRRIWAEW 10
KR++ W EW
Sbjct: 36 KRSKAEWKEW 45


>sp|HDLA_ARCPA|HETERODISULFIDE reductase subunit A-like protein|Archaeoglobus profundus (strain

Query: 2 RTRRIWAEW 10
R ++ W +W
Sbjct: 237 RKKQTWVDW 245


>sp|PCKG_SACS2|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 KRTRRIWAEW 10
K +++W W
Sbjct: 490 KEDKKVWVSW 499


>sp|BGAL_HALLT|BETA-GALACTOSIDASE Bga|Halorubrum lacusprofundi (strain ATCC 49239

Query: 5 RIWAEW 10
R WAEW
Sbjct: 549 RTWAEW 554


>sp|EF2_STAMF|ELONGATION factor 2|Staphylothermus marinus (strain ATCC 43588

Query: 2 RTRRIWA 8
+ RRIWA
Sbjct: 535 QARRIWA 541


>sp|G1PDH_IGNH4|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Ignicoccus hospitalis (strain KIN4/I /

Query: 6 IWAEW 10
+W+EW
Sbjct: 45 VWSEW 49




16|SequenceR|85|76|MTPPTKRTRR

>sp|COPA_ARCFU|PROBABLE copper-exporting P-type ATPase|Archaeoglobus fulgidus (strain

Query: 2 TPPTKRTRR 10
TPP +RT R
Sbjct: 13 TPPMERTVR 21


>sp|Y1662_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 1 MTPPTKRT 8
M PP KRT
Sbjct: 239 MKPPYKRT 246


>sp|DPHB_PYRNV|DIPHTHINE synthase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 TPPTKRTRR 10
+PPT+ TRR
Sbjct: 48 SPPTRLTRR 56




17|SequenceR|90|81|KLIEEMTPPT

>sp|EF2_META3|ELONGATION factor 2|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 KLIEEMTP 8
KLIE+M+P
Sbjct: 177 KLIEKMSP 184


>sp|CSD_AERPE|PROBABLE cysteine desulfurase|Aeropyrum pernix (strain ATCC 700893

Query: 2 LIEEMTPP 9
L+EE+ PP
Sbjct: 237 LLEELEPP 244


>sp|PURO_HALMA|IMP cyclohydrolase|Haloarcula marismortui (strain ATCC 43049

Query: 2 LIEEMTPPT 10
L+EE+T PT
Sbjct: 138 LVEEVTEPT 146


>sp|EF2_METM7|ELONGATION factor 2|Methanococcus maripaludis (strain C7 /

Query: 1 KLIEEMTP 8
KLIE+M P
Sbjct: 177 KLIEKMAP 184


>sp|EF2_METM6|ELONGATION factor 2|Methanococcus maripaludis (strain C6 /

Query: 1 KLIEEMTP 8
KLIE+M P
Sbjct: 177 KLIEKMAP 184


>sp|EF2_METM5|ELONGATION factor 2|Methanococcus maripaludis (strain C5 /

Query: 1 KLIEEMTP 8
KLIE+M P
Sbjct: 177 KLIEKMAP 184


>sp|EF2_METVS|ELONGATION factor 2|Methanococcus vannielii (strain ATCC 35089

Query: 1 KLIEEMTP 8
KLIE+M P
Sbjct: 177 KLIEKMAP 184


>sp|EF2_METMP|ELONGATION factor 2|Methanococcus maripaludis (strain DSM 14266

Query: 1 KLIEEMTP 8
KLIE+M P
Sbjct: 177 KLIEKMAP 184


>sp|CDC61_HALSA|ORC1-TYPE DNA replication protein 1|Halobacterium salinarum (strain ATCC

Query: 2 LIEEMTP 8
LIEE+TP
Sbjct: 247 LIEEVTP 253


>sp|TAW22_NANEQ|TRNA (guanine(37)-N(1))/4-demethylwyosine(37)-methyltransferase

Query: 1 KLIEEMTP 8
KLIEE+ P
Sbjct: 206 KLIEELKP 213


>sp|TMCA_HALMA|TRNA(MET) cytidine acetyltransferase TmcA|Haloarcula marismortui (strain ATCC

Query: 1 KLIEEMTPPT 10
+LIE+ TP T
Sbjct: 428 QLIEDATPET 437


>sp|SYL_PYRAR|LEUCINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 KLIEEMT--PP 9
KL+EEMT PP
Sbjct: 475 KLVEEMTIVPP 485


>sp|IORA_PYRHO|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus horikoshii (strain ATCC

Query: 1 KLIEEMTPP 9
K ++EM PP
Sbjct: 371 KKVQEMVPP 379


>sp|SUCC_PYRCJ|SUCCINATE--COA ligase [ADP-forming] subunit beta|Pyrobaculum calidifontis

Query: 1 KLIEEMTPP 9
K EEM PP
Sbjct: 33 KAAEEMGPP 41


>sp|GLYA_AERPE|SERINE hydroxymethyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 1 KLIEEMTP 8
KLIEE+ P
Sbjct: 163 KLIEEVKP 170




18|SequenceR|95|86|RHKENKLIEE

>sp|SRP54_PYRFU|SIGNAL recognition particle 54 kDa|Pyrococcus furiosus (strain ATCC 43587

Query: 1 RHKENK-LIEE 10
RHKE+K LIEE
Sbjct: 193 RHKEDKALIEE 203




19|SequenceR|100|91|IKIEERHKEN

>sp|DPHB_METMP|DIPHTHINE synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 IKIEERHKEN 10
+KIEE+ KEN
Sbjct: 184 LKIEEKRKEN 193


>sp|PURA_PYRAB|ADENYLOSUCCINATE synthetase|Pyrococcus abyssi (strain GE5 /

Query: 3 IEERHKE 9
IEE+HKE
Sbjct: 106 IEEKHKE 112


>sp|AATI_SACS2|A-TYPE ATP synthase subunit I|Saccharolobus solfataricus (strain ATCC

Query: 2 KIEERHKE 9
K+EER+KE
Sbjct: 98 KLEERYKE 105


>sp|PURA_META3|ADENYLOSUCCINATE synthetase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 IEERHKE 9
IEE+HKE
Sbjct: 106 IEEKHKE 112


>sp|DPHB_SACS2|DIPHTHINE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 IKIEERHKEN 10
+++EERHK++
Sbjct: 187 LRLEERHKKS 196


>sp|DPHB_METM7|DIPHTHINE synthase|Methanococcus maripaludis (strain C7 /

Query: 1 IKIEERHKEN 10
+KIEE+ EN
Sbjct: 184 LKIEEKRNEN 193


>sp|Y1954_ARCFU|PUTATIVE amidase AF_1954|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 IKIEERHKE 9
IKIEER E
Sbjct: 338 IKIEERKME 346


>sp|PURA_PYRHO|ADENYLOSUCCINATE synthetase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 IEERHKE 9
IEE+HK+
Sbjct: 106 IEEKHKQ 112


>sp|PURA_THEGJ|ADENYLOSUCCINATE synthetase|Thermococcus gammatolerans (strain DSM 15229

Query: 3 IEERHKE 9
IEE+HK+
Sbjct: 106 IEEKHKQ 112


>sp|KCY_THEKO|CYTIDYLATE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 IKIEERHKEN 10
+KI ER K+N
Sbjct: 125 VKIAEREKQN 134


>sp|PURA_THEKO|ADENYLOSUCCINATE synthetase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 IEERHKE 9
IEE+HK+
Sbjct: 106 IEEKHKQ 112


>sp|GVPC2_HALSA|GAS vesicle protein C2|Halobacterium salinarum (strain ATCC 700922

Query: 1 IKIEERHKEN 10
I+ + RH+EN
Sbjct: 38 IRTDSRHREN 47


>sp|RGYR_PYRHO|REVERSE gyrase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 KIEERH 7
KIEERH
Sbjct: 1334 KIEERH 1339


>sp|PURA_METM6|ADENYLOSUCCINATE synthetase|Methanococcus maripaludis (strain C6 /

Query: 3 IEERHKE 9
IEE HKE
Sbjct: 106 IEETHKE 112


>sp|DPHB_META3|DIPHTHINE synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 IKIEERHKEN 10
+KIEE+ EN
Sbjct: 184 LKIEEKRNEN 193




20|SequenceR|105|96|FDQSKIKIEE

>sp|RL18_THEPD|LARGE ribosomal subunit protein uL18|Thermofilum pendens (strain DSM 2475

Query: 1 FDQSKIKIEE 10
FD K KIEE
Sbjct: 184 FDSVKQKIEE 193


>sp|ASPD_METBU|L-ASPARTATE dehydrogenase|Methanococcoides burtonii (strain DSM 6242

Query: 1 FDQSKIKI 8
FD++K+KI
Sbjct: 204 FDKTKVKI 211


>sp|HERA_SULAC|DNA double-strand break repair helicase|Sulfolobus acidocaldarius

Query: 1 FDQSKIKIEE 10
F++ K+KIEE
Sbjct: 253 FERLKVKIEE 262


>sp|RL15_SULAC|LARGE ribosomal subunit protein uL15|Sulfolobus acidocaldarius (strain

Query: 2 DQSKIKIEE 10
D KIKIEE
Sbjct: 81 DNDKIKIEE 89




21|SequenceR|110|101|KEKEYFDQSK

>sp|PSB2_SULTO|PROTEASOME subunit beta 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 KEKEYFDQSK 10
+EKEY+ Q K
Sbjct: 197 EEKEYYPQRK 206


>sp|SYT_CALMQ|THREONINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 3 KEYFDQSK 10
KE+FDQ+K
Sbjct: 382 KEFFDQNK 389


>sp|MDH_PYRCJ|MALATE dehydrogenase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 KEKEYFDQS 9
+EKE F+QS
Sbjct: 284 EEKEKFNQS 292


>sp|F16PA_METHJ|FRUCTOSE-1,6-BISPHOSPHATASE class 1|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 EYFDQS 9
EYFDQ+
Sbjct: 210 EYFDQN 215


>sp|HIS8_META3|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 KEKEYFDQSK 10
++KE+F++SK
Sbjct: 272 RDKEFFEKSK 281




22|SequenceR|115|106|EKSLLKEKEY

>sp|FLUC_THEON|FLUORIDE-SPECIFIC ion channel FluC|Thermococcus onnurineus (strain NA1)

Query: 3 SLLKEKEY 10
SLL+E+EY
Sbjct: 89 SLLREREY 96


>sp|FLUC_THEKO|FLUORIDE-SPECIFIC ion channel FluC|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 SLLKEKEY 10
SLL+E+EY
Sbjct: 89 SLLREREY 96


>sp|FLUC_THEGJ|FLUORIDE-SPECIFIC ion channel FluC|Thermococcus gammatolerans (strain DSM 15229

Query: 3 SLLKEKEY 10
SLL+E+EY
Sbjct: 89 SLLREREY 96


>sp|Y645_METJA|UNCHARACTERIZED protein MJ0645|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EKSLLKEKEY 10
EKSLLK+ Y
Sbjct: 86 EKSLLKKNGY 95


>sp|CBID_METM6|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanococcus maripaludis (strain C6 /

Query: 2 KSLLKEKEY 10
KSLLK+ EY
Sbjct: 141 KSLLKDDEY 149


>sp|Y642_METMP|UPF0285 protein MMP0642|Methanococcus maripaludis (strain DSM 14266

Query: 1 EKSLLKEKE 9
EKS LKE E
Sbjct: 36 EKSFLKELE 44


>sp|Y778_AERPE|PUTATIVE HTH-type transcriptional regulatory protein|Aeropyrum pernix

Query: 1 EKSLLKEKEY 10
EKSL+K+ +Y
Sbjct: 295 EKSLIKDIDY 304


>sp|RS17_HALSA|SMALL ribosomal subunit protein uS17|Halobacterium salinarum (strain

Query: 1 EKSLLKEKEY 10
EK+++ E+EY
Sbjct: 42 EKTVVVEREY 51


>sp|RS17_HALS3|SMALL ribosomal subunit protein uS17|Halobacterium salinarum (strain

Query: 1 EKSLLKEKEY 10
EK+++ E+EY
Sbjct: 42 EKTVVVEREY 51


>sp|FEN_PICTO|FLAP endonuclease 1|Picrophilus torridus (strain ATCC 700027

Query: 1 EKSLLKEK 8
E+SL+KEK
Sbjct: 93 ERSLIKEK 100




23|SequenceR|120|111|LEESTEKSLL

>sp|SYV_THEAC|VALINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 LEESTEKSLL 10
+ ES+EKSLL
Sbjct: 111 ISESSEKSLL 120


>sp|G3P_METST|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 LEESTEKSLL 10
LEE EKS+L
Sbjct: 319 LEEDGEKSIL 328




24|SequenceR|125|116|VPPPLLEEST

>sp|PUS10_HALLT|TRNA pseudouridine synthase Pus10|Halorubrum lacusprofundi (strain ATCC

Query: 2 PPPLLEES 9
PPPL+EE+
Sbjct: 96 PPPLIEEN 103


>sp|SYA_SACS2|ALANINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 VPPPLLEE 8
VPP LLEE
Sbjct: 446 VPPDLLEE 453


>sp|SYA_SACI7|ALANINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 VPPPLLEE 8
+PP LLEE
Sbjct: 446 IPPDLLEE 453


>sp|SYA_SACI2|ALANINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 VPPPLLEE 8
+PP LLEE
Sbjct: 446 IPPDLLEE 453


>sp|SYA_SACI1|ALANINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 VPPPLLEE 8
+PP LLEE
Sbjct: 446 IPPDLLEE 453


>sp|SYA_SACI6|ALANINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 VPPPLLEE 8
+PP LLEE
Sbjct: 446 IPPDLLEE 453


>sp|SYA_SACI4|ALANINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 VPPPLLEE 8
+PP LLEE
Sbjct: 446 IPPDLLEE 453


>sp|SYA_SACI3|ALANINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 VPPPLLEE 8
+PP LLEE
Sbjct: 446 IPPDLLEE 453


>sp|R1PKD_THEKO|ADP-DEPENDENT ribose-1-phosphate kinase|Thermococcus kodakarensis (strain ATCC

Query: 2 PPPLLEES 9
PP L+EE+
Sbjct: 135 PPELIEEA 142


>sp|HDG_METBF|HYPOXANTHINE DNA glycosylase|Methanosarcina barkeri (strain Fusaro /

Query: 3 PPLLEEST 10
PP+++E+T
Sbjct: 7 PPVIDENT 14


>sp|RAD50_METMA|DNA double-strand break repair Rad50|Methanosarcina mazei (strain ATCC

Query: 1 VPPPLLEEST 10
+PP +L+E T
Sbjct: 1002 LPPMILDEPT 1011


>sp|RAD50_METAC|DNA double-strand break repair Rad50|Methanosarcina acetivorans (strain

Query: 1 VPPPLLEEST 10
+PP +L+E T
Sbjct: 1006 LPPMILDEPT 1015


>sp|Y2003_METTM|UNCHARACTERIZED protein MTBMA_p00030|Methanothermobacter marburgensis (strain ATCC

Query: 2 PPPLLEES 9
PPPL+E++
Sbjct: 109 PPPLIEKN 116


>sp|PIMT_KORCO|PROTEIN-L-ISOASPARTATE O-methyltransferase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 VPPPLLE 7
+PPPL+E
Sbjct: 163 IPPPLIE 169


>sp|RPO2C_ARCFU|DNA-DIRECTED RNA polymerase subunit Rpo2C|Archaeoglobus fulgidus (strain ATCC

Query: 2 PPPLLEEST 10
PP LEE T
Sbjct: 300 PPRFLEEPT 308


>sp|RPO11_KORCO|DNA-DIRECTED RNA polymerase subunit Rpo11|Korarchaeum cryptofilum (strain

Query: 1 VPPPLLEEST 10
VP PL EES
Sbjct: 45 VPHPLKEESV 54




25|SequenceR|130|121|KIQTQVPPPL

>sp|SYA_METBU|ALANINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 5 QVPPP 9
QVPPP
Sbjct: 110 QVPPP 114


>sp|SYA_METTP|ALANINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 5 QVPPP 9
QVPPP
Sbjct: 110 QVPPP 114


>sp|SYA_METBF|ALANINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 5 QVPPP 9
QVPPP
Sbjct: 110 QVPPP 114


>sp|SYA_METMA|ALANINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 QVPPP 9
QVPPP
Sbjct: 110 QVPPP 114


>sp|SYA_METAC|ALANINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 QVPPP 9
QVPPP
Sbjct: 110 QVPPP 114


>sp|PIMT_KORCO|PROTEIN-L-ISOASPARTATE O-methyltransferase|Korarchaeum cryptofilum (strain OPF8)

Query: 5 QVPPPL 10
Q+PPPL
Sbjct: 162 QIPPPL 167


>sp|TRPB2_AERPE|TRYPTOPHAN synthase beta chain 2|Aeropyrum pernix (strain ATCC 700893

Query: 5 QVPPPL 10
+VPPPL
Sbjct: 29 EVPPPL 34




26|SequenceR|135|126|ASAHGKIQTQ

>sp|RL1_PYRIL|LARGE ribosomal subunit protein uL1|Pyrobaculum islandicum (strain DSM

Query: 1 ASAHGKIQTQ 10
A AHG +TQ
Sbjct: 65 AFAHGAFETQ 74


>sp|RL1_PYRCJ|LARGE ribosomal subunit protein uL1|Pyrobaculum calidifontis (strain

Query: 1 ASAHGKIQTQ 10
A AHG +TQ
Sbjct: 65 AFAHGAFETQ 74


>sp|RFCS_SACS2|REPLICATION factor C small subunit|Saccharolobus solfataricus (strain ATCC

Query: 1 ASAHGKIQTQ 10
ASA+GKI +
Sbjct: 210 ASAYGKISVE 219


>sp|RFCS_SULAC|REPLICATION factor C small subunit|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 ASAHGKIQTQ 10
ASA+GKI +
Sbjct: 207 ASAYGKITVE 216




27|SequenceR|140|131|KGFYPASAHG

>sp|Y1468_METJA|UNCHARACTERIZED protein MJ1468|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 FYPASAH 9
FYP+SAH
Sbjct: 390 FYPSSAH 396


>sp|RS4_METS3|SMALL ribosomal subunit protein uS4|Methanobrevibacter smithii (strain

Query: 2 GFYPAS 7
GFYP+S
Sbjct: 153 GFYPSS 158


>sp|RS4_METTH|SMALL ribosomal subunit protein uS4|Methanothermobacter

Query: 2 GFYPAS 7
GFYP+S
Sbjct: 153 GFYPSS 158


>sp|SYFA_METM5|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus maripaludis (strain C5 /

Query: 3 FYPASAH 9
YPA AH
Sbjct: 228 LYPAKAH 234


>sp|SYM_METLZ|METHIONINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 3 FYPASAHG 10
F+PA HG
Sbjct: 297 FWPAMLHG 304


>sp|SYFA_METVS|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus vannielii (strain ATCC 35089

Query: 4 YPASAH 9
YPA AH
Sbjct: 229 YPAKAH 234


>sp|SYFA_METMP|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus maripaludis (strain DSM 14266

Query: 4 YPASAH 9
YPA AH
Sbjct: 229 YPAKAH 234


>sp|MUTL_METLZ|DNA mismatch repair protein MutL|Methanocorpusculum labreanum (strain

Query: 1 KGFYPAS 7
KG YPA+
Sbjct: 283 KGMYPAA 289


>sp|RPO2_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo2|Sulfolobus acidocaldarius (strain ATCC

Query: 1 KGFYPASA 8
KG+Y ASA
Sbjct: 309 KGYYLASA 316


>sp|NADC_METTH|PROBABLE nicotinate-nucleotide pyrophosphorylase

Query: 2 GFYPASAH 9
GF ASAH
Sbjct: 260 GFITASAH 267


>sp|SYM_METHJ|METHIONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 FYPASAHG 10
F+PA HG
Sbjct: 299 FWPAMLHG 306


>sp|PANB_PYRIL|3-METHYL-2-OXOBUTANOATE hydroxymethyltransferase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 KGFYPASAH 9
KG +PA H
Sbjct: 250 KGLFPAREH 258


>sp|PANB_PYRNV|3-METHYL-2-OXOBUTANOATE hydroxymethyltransferase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 KGFYPASAH 9
KG +PA H
Sbjct: 250 KGLFPAREH 258


>sp|TYSY_METMA|PUTATIVE thymidylate synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GFYPASAHG 10
G YPA+ +G
Sbjct: 165 GAYPANLYG 173


>sp|TYSY_METBU|PUTATIVE thymidylate synthase|Methanococcoides burtonii (strain DSM 6242

Query: 2 GFYPASAHG 10
G YPA+ +G
Sbjct: 165 GAYPANLYG 173


>sp|TYSY_METBF|PUTATIVE thymidylate synthase|Methanosarcina barkeri (strain Fusaro /

Query: 2 GFYPASAHG 10
G YPA+ +G
Sbjct: 165 GAYPANLYG 173


>sp|TYSY_METAC|PUTATIVE thymidylate synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 GFYPASAHG 10
G YPA+ +G
Sbjct: 165 GAYPANLYG 173


>sp|GLNA_SULAC|GLUTAMINE synthetase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 KGFYPAS 7
+G+YPAS
Sbjct: 176 EGYYPAS 182


>sp|LYSY_IGNH4|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 1 KGFYPAS 7
+G YPAS
Sbjct: 51 RGIYPAS 57


>sp|GSA_METMA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 FYPASAHG 10
FY ASA+G
Sbjct: 37 FYTASANG 44


>sp|GSA_METBF|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina barkeri (strain Fusaro /

Query: 3 FYPASAHG 10
FY ASA+G
Sbjct: 37 FYTASANG 44




28|SequenceR|145|136|VSPEEKGFYP

>sp|FDHA1_METMP|F420-DEPENDENT formate dehydrogenase 1 subunit|Methanococcus maripaludis (strain

Query: 2 SPEEKGFY 9
SPEE GF+
Sbjct: 92 SPEEVGFF 99


>sp|MPTN_METAC|TETRAHYDROMETHANOPTERIN:ALPHA-L-GLUTAMATE ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 SPEEKGFYP 10
+ +EKGF+P
Sbjct: 22 AAKEKGFFP 30


>sp|RL21_METJA|LARGE ribosomal subunit protein eL21|Methanocaldococcus jannaschii

Query: 3 PEEKGFYP 10
P E+G YP
Sbjct: 20 PRERGLYP 27


>sp|RTCA_METMA|RNA 3'-terminal phosphate cyclase|Methanosarcina mazei (strain ATCC

Query: 1 VSPEEKGFYP 10
V+ +E+G+YP
Sbjct: 149 VTLKERGYYP 158


>sp|Y634_METJA|UNCHARACTERIZED KamA family protein MJ0634|Methanocaldococcus jannaschii (strain

Query: 1 VSPEEKGFYP 10
+ P EKG YP
Sbjct: 576 MHPWEKGIYP 585


>sp|KDPA_HALSA|POTASSIUM-TRANSPORTING ATPase potassium-binding subunit|Halobacterium salinarum (strain

Query: 1 VSPEEKG 7
VSPE KG
Sbjct: 534 VSPESKG 540


>sp|KDPA_HALS3|POTASSIUM-TRANSPORTING ATPase potassium-binding subunit|Halobacterium salinarum (strain

Query: 1 VSPEEKG 7
VSPE KG
Sbjct: 534 VSPESKG 540


>sp|RPO1N_SACS2|DNA-DIRECTED RNA polymerase subunit Rpo1N|Saccharolobus solfataricus (strain

Query: 1 VSPEEKGF 8
+SPE +GF
Sbjct: 774 ISPEARGF 781


>sp|RPO1N_SACSH|DNA-DIRECTED RNA polymerase subunit Rpo1N|Saccharolobus shibatae (strain ATCC

Query: 1 VSPEEKGF 8
+SPE +GF
Sbjct: 774 ISPEARGF 781


>sp|HELS_SULTO|ATP-DEPENDENT DNA helicase Hel308|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 VSPEEKGF 8
+ PE+KGF
Sbjct: 211 IYPEKKGF 218


>sp|COBD_AERPE|PROBABLE cobalamin biosynthesis protein CobD|Aeropyrum pernix (strain ATCC

Query: 1 VSPEEKGFY 9
V E+KGFY
Sbjct: 269 VRLEKKGFY 277


>sp|Y1023_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 3 PEEKGFY 9
PEE+G Y
Sbjct: 71 PEERGLY 77


>sp|PSB2_SULTO|PROTEASOME subunit beta 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 EEKGFYP 10
EEK +YP
Sbjct: 197 EEKEYYP 203


>sp|MOAC_PYRFU|PROBABLE cyclic pyranopterin monophosphate synthase|Pyrococcus furiosus

Query: 1 VSPEEKGFYP 10
V +EKG YP
Sbjct: 129 VEKDEKGQYP 138


>sp|THPR_AERPE|RNA 2',3'-cyclic phosphodiesterase|Aeropyrum pernix (strain ATCC 700893

Query: 2 SPEEKGFYP 10
SPE++ F+P
Sbjct: 104 SPEKQEFHP 112


>sp|GLNK2_ARCFU|NITROGEN regulatory protein GlnK2|Archaeoglobus fulgidus (strain ATCC

Query: 4 EEKGFY 9
EE+GFY
Sbjct: 21 EERGFY 26


>sp|MOAC_PYRHO|PROBABLE cyclic pyranopterin monophosphate synthase|Pyrococcus horikoshii

Query: 1 VSPEEKGFYP 10
V +EKG YP
Sbjct: 131 VEKDEKGQYP 140


>sp|RADA_PYRAR|DNA repair and recombination protein|Pyrobaculum arsenaticum (strain

Query: 4 EEKGFY 9
+EKGFY
Sbjct: 42 KEKGFY 47


>sp|Y3403_METJA|UNCHARACTERIZED protein MJECS03|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 SPEEKGFY 9
S EE+GFY
Sbjct: 8 SREEQGFY 15


>sp|SYT_NATPD|THREONINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 PEEKGFY 9
P E+GFY
Sbjct: 99 PTEEGFY 105


>sp|PORD_METBF|PYRUVATE synthase subunit PorD|Methanosarcina barkeri (strain Fusaro /

Query: 1 VSPEEKGFY 9
V P E GF+
Sbjct: 58 VKPRENGFF 66




29|SequenceR|150|141|TSSPAVSPEE

>sp|CARB_PYRAE|CARBAMOYL phosphate synthase large chain|Pyrobaculum aerophilum (strain ATCC

Query: 2 SSPAVSPEE 10
SSPA SPEE
Sbjct: 142 SSPAKSPEE 150


>sp|THRC_METAC|THREONINE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 TSSPAVSPEE 10
+ +PA++PEE
Sbjct: 275 SGAPAITPEE 284




30|SequenceR|155|146|QFTKGTSSPA

>sp|GCST_THEON|PROBABLE aminomethyltransferase|Thermococcus onnurineus (strain NA1)

Query: 1 QFTKGTSSP 9
+ T GTSSP
Sbjct: 338 EVTSGTSSP 346


>sp|IF2G_SACS2|TRANSLATION initiation factor 2 subunit|Saccharolobus solfataricus (strain ATCC

Query: 1 QFTKGT 6
QFTKGT
Sbjct: 168 QFTKGT 173




31|SequenceR|160|151|MWSGPQFTKG

>sp|NASB_HALMT|PROBABLE nitrate transporter|Haloferax mediterranei (strain ATCC 33500

Query: 2 WSGPQFTKG 10
WSGP F+ G
Sbjct: 160 WSGPLFSTG 168


>sp|SPSS2_ARCFU|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 WSGPQFTK 9
WSG FTK
Sbjct: 244 WSGRAFTK 251


>sp|TRM56_PYRAB|TRNA (cytidine(56)-2'-O)-methyltransferase|Pyrococcus abyssi (strain

Query: 2 WSGPQFTK 9
W GP F K
Sbjct: 55 WGGPFFVK 62


>sp|Y1393_METJA|UNCHARACTERIZED protein MJ1393|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MWSGPQFTKG 10
+W GP F G
Sbjct: 220 LWDGPYFLPG 229


>sp|PELO_METBU|PROTEIN pelota homolog|Methanococcoides burtonii (strain DSM 6242

Query: 3 SGPQFTK 9
SGP FTK
Sbjct: 196 SGPGFTK 202


>sp|HEM1_HALMA|GLUTAMYL-TRNA reductase|Haloarcula marismortui (strain ATCC 43049

Query: 5 PQFTKG 10
P+FTKG
Sbjct: 418 PEFTKG 423


>sp|APBC_PYRHO|IRON-SULFUR cluster carrier protein|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 MWSGPQFTKG 10
+W GP TK
Sbjct: 127 IWRGPLVTKA 136


>sp|GCH1L_PYRAB|GTP cyclohydrolase 1 type 2|Pyrococcus abyssi (strain GE5 /

Query: 1 MWSGPQFTKG 10
+W G + KG
Sbjct: 67 IWGGVSYVKG 76


>sp|NEP1_AERPE|RIBOSOMAL RNA small subunit methyltransferase|Aeropyrum pernix (strain ATCC

Query: 1 MWSGPQFTK 9
+WS PQ K
Sbjct: 17 LWSHPQVLK 25


>sp|SYC_IGNH4|CYSTEINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 MWSGPQFTK 9
MWS +F K
Sbjct: 161 MWSQEEFVK 169




32|SequenceR|169|156|QNHSKGDRPMWSGP

>sp|THI4_METMA|THIAMINE thiazole synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 6 GDRPMWS 12
G++PMWS
Sbjct: 195 GEKPMWS 201


>sp|THI4_METBF|THIAMINE thiazole synthase|Methanosarcina barkeri (strain Fusaro /

Query: 6 GDRPMWS 12
G++PMWS
Sbjct: 195 GEKPMWS 201


>sp|THI4_METAC|THIAMINE thiazole synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 6 GDRPMWS 12
G++PMWS
Sbjct: 195 GEKPMWS 201


>sp|TRM1_PYRIL|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrobaculum islandicum

Query: 3 HSKGDRPMWSGP 14
HS G P+W GP
Sbjct: 255 HSSG--PLWIGP 264


>sp|TRM1_THEGJ|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermococcus gammatolerans

Query: 9 PMWSGP 14
PMW GP
Sbjct: 275 PMWLGP 280


>sp|THI4_METTP|THIAMINE thiazole synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 6 GDRPMWSG 13
G++PMW+
Sbjct: 195 GEKPMWAA 202


>sp|DLDH_HALVD|DIHYDROLIPOYL dehydrogenase|Haloferax volcanii (strain ATCC 29605

Query: 6 GDRPMWS 12
GD P+WS
Sbjct: 162 GDEPVWS 168


>sp|THI4_METBU|THIAMINE thiazole synthase|Methanococcoides burtonii (strain DSM 6242

Query: 6 GDRPMWS 12
G++PMW+
Sbjct: 195 GEKPMWA 201


>sp|DP2L_PYRFU|DNA polymerase II large subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 6 GDRPMWSGP 14
G RP+++GP
Sbjct: 334 GGRPLFAGP 342


>sp|MCAL_HALMA|L-MALYL-COA/BETA-METHYLMALYL-COA lyase|Haloarcula marismortui (strain ATCC 43049

Query: 6 GDRPMWSG 13
G+RP W G
Sbjct: 189 GERPRWDG 196


>sp|SYC_META3|CYSTEINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 SKGDRPMWSGP 14
+K D P W P
Sbjct: 185 AKPDEPKWDSP 195


>sp|TRPE2_HALMA|ANTHRANILATE synthase component 1 2|Haloarcula marismortui (strain ATCC 43049

Query: 3 HSKGDRPM 10
H+K DRP+
Sbjct: 13 HAKADRPV 20


>sp|FLPA_THEVO|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Thermoplasma volcanium (strain

Query: 4 SKGDRP 9
SKGDRP
Sbjct: 2 SKGDRP 7


>sp|Y1787_METS5|UPF0201 protein Msed_1787|Metallosphaera sedula (strain ATCC 51363

Query: 4 SKGDRPMWSGP 14
S+G RP+W P
Sbjct: 130 SRG-RPLWDNP 139


>sp|TRM1_PYRAR|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrobaculum arsenaticum

Query: 9 PMWSGP 14
P+W GP
Sbjct: 261 PLWVGP 266


>sp|HIS1_IGNH4|ATP phosphoribosyltransferase|Ignicoccus hospitalis (strain KIN4/I /

Query: 5 KGDRPMW 11
K ++PMW
Sbjct: 241 KSEKPMW 247


>sp|TRM1_METLZ|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanocorpusculum labreanum

Query: 9 PMWSGP 14
P+W GP
Sbjct: 269 PLWMGP 274


>sp|TRM1_PYRAE|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrobaculum aerophilum

Query: 9 PMWSGP 14
P+W GP
Sbjct: 261 PLWVGP 266


>sp|ENO_HALWD|ENOLASE walsbyi (strain DSM 16790

Query: 4 SKGDRPMWSGP 14
+KGD W+ P
Sbjct: 192 AKGDEGAWAPP 202


>sp|ENO_HALLT|ENOLASE lacusprofundi (strain ATCC 49239

Query: 4 SKGDRPMWSGP 14
+KGD W+ P
Sbjct: 191 AKGDEGAWAPP 201


>sp|COXX_PYRIL|PROTOHEME IX farnesyltransferase|Pyrobaculum islandicum (strain DSM 4184

Query: 5 KGDRPMW 11
K DR MW
Sbjct: 252 KSDRAMW 258


>sp|RNJ_PYRAB|RIBONUCLEASE J|Pyrococcus abyssi (strain GE5 /

Query: 2 NHSKGDRP 9
NH G+RP
Sbjct: 183 NHPYGERP 190


>sp|TRM1_THEON|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermococcus onnurineus

Query: 9 PMWSGP 14
P+W GP
Sbjct: 274 PLWLGP 279


>sp|TRM1_PYRFU|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrococcus furiosus (strain

Query: 9 PMWSGP 14
P+W GP
Sbjct: 277 PLWLGP 282


>sp|Y1546_PYRCJ|UPF0282 protein Pcal_1546|Pyrobaculum calidifontis (strain DSM 21063

Query: 9 PMWSGP 14
P+W GP
Sbjct: 153 PLWHGP 158


>sp|TRM1_THEKO|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermococcus kodakarensis

Query: 9 PMWSGP 14
P+W GP
Sbjct: 274 PLWLGP 279


>sp|RNP4_METS3|RIBONUCLEASE P protein component 4|Methanobrevibacter smithii (strain ATCC

Query: 4 SKGDRPMW 11
S+G RP W
Sbjct: 2 SRGKRPKW 9


>sp|COXX_PYRNV|PROTOHEME IX farnesyltransferase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 5 KGDRPMW 11
K DR MW
Sbjct: 252 KSDRAMW 258


>sp|RL6_THEVO|LARGE ribosomal subunit protein uL6|Thermoplasma volcanium (strain ATCC

Query: 5 KGDRPMWSGP 14
KGDR +GP
Sbjct: 132 KGDRLFLNGP 141


>sp|TRM1_METBF|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosarcina barkeri

Query: 9 PMWSGP 14
P+W GP
Sbjct: 283 PLWLGP 288


>sp|TRM1_HALWD|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloquadratum walsbyi

Query: 2 NHSKGDRPMWSGP 14
+H +G+R + +GP
Sbjct: 268 HHCEGNRVITAGP 280


>sp|TRM1_METMA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosarcina mazei (strain

Query: 9 PMWSGP 14
P+W GP
Sbjct: 283 PLWLGP 288


>sp|TRM1_METAC|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosarcina acetivorans

Query: 9 PMWSGP 14
P+W GP
Sbjct: 283 PLWLGP 288


>sp|TRM1_PYRNV|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrobaculum neutrophilum

Query: 9 PMWSGP 14
P+W GP
Sbjct: 259 PLWLGP 264


>sp|SYTC_SACS2|THREONINE--TRNA ligase catalytic subunit|Saccharolobus solfataricus (strain ATCC

Query: 3 HSKGDRPMW 11
H KG P W
Sbjct: 427 HFKGKLPTW 435


>sp|SYTC_SACI7|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain Y.G.57.14

Query: 3 HSKGDRPMW 11
H KG P W
Sbjct: 427 HFKGKLPTW 435


>sp|SYTC_SACI2|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain L.S.2.15

Query: 3 HSKGDRPMW 11
H KG P W
Sbjct: 427 HFKGKLPTW 435


>sp|SYTC_SACI1|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain Y.N.15.51

Query: 3 HSKGDRPMW 11
H KG P W
Sbjct: 427 HFKGKLPTW 435


>sp|SYTC_SACI3|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain M.16.27)

Query: 3 HSKGDRPMW 11
H KG P W
Sbjct: 427 HFKGKLPTW 435


>sp|SYTC_SACI6|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain M.16.4 /

Query: 3 HSKGDRPMW 11
H KG P W
Sbjct: 427 HFKGKLPTW 435


>sp|TRM1_HALSA|TRNA (guanine(26)-N(2))-dimethyltransferase|Halobacterium salinarum

Query: 9 PMWSGP 14
P+W GP
Sbjct: 271 PLWLGP 276


>sp|TRM1_HALS3|TRNA (guanine(26)-N(2))-dimethyltransferase|Halobacterium salinarum

Query: 9 PMWSGP 14
P+W GP
Sbjct: 271 PLWLGP 276


>sp|KAD6_METKA|PUTATIVE adenylate kinase|Methanopyrus kandleri (strain AV19 /

Query: 2 NHSKGDRPMW 11
NH +GD W
Sbjct: 164 NHRRGDDVDW 173


>sp|ENO3_METHJ|ENOLASE 3|Methanospirillum hungatei JF-1 (strain ATCC

Query: 5 KGDRPMWSGP 14
KGD W+ P
Sbjct: 190 KGDEGAWAPP 199


>sp|SYTC_SACI4|THREONINE--TRNA ligase catalytic subunit|Saccharolobus islandicus (strain M.14.25 /

Query: 3 HSKGDRPMW 11
H KG P W
Sbjct: 427 HFKGKLPTW 435


>sp|Y1056_PYRAR|UPF0282 protein Pars_1056|Pyrobaculum arsenaticum (strain DSM 13514

Query: 9 PMWSGP 14
P+W GP
Sbjct: 154 PLWHGP 159


>sp|PYRC_AERPE|DIHYDROOROTASE pernix (strain ATCC 700893

Query: 6 GDRPMWSG 13
GDR +W G
Sbjct: 351 GDRCLWDG 358


>sp|ENDA_THEVO|TRNA-SPLICING endonuclease|Thermoplasma volcanium (strain ATCC 51530

Query: 1 QNHSKGDRPMWSG 13
++ +K D P W G
Sbjct: 166 RHFTKDDLPHWMG 178


>sp|RS28_NANEQ|SMALL ribosomal subunit protein eS28|Nanoarchaeum equitans (strain

Query: 2 NHSKGDRPMWS 12
N KGD +WS
Sbjct: 11 NVVKGDTVIWS 21


>sp|TRM1_HALLT|TRNA (guanine(26)-N(2))-dimethyltransferase|Halorubrum lacusprofundi

Query: 9 PMWSGP 14
P+W GP
Sbjct: 270 PLWLGP 275


>sp|MTSA_METBA|METHYLATED-THIOL--COENZYME M methyltransferase|Methanosarcina barkeri

Query: 4 SKGDRPMWSGP 14
+K DRP +GP
Sbjct: 90 NKPDRPPVTGP 100


>sp|Y934_PYRNV|UPF0282 protein Tneu_0934|Pyrobaculum neutrophilum (strain DSM 2338

Query: 9 PMWSGP 14
P+W GP
Sbjct: 154 PLWHGP 159


>sp|Y021_PYRIL|UPF0282 protein Pisl_0021|Pyrobaculum islandicum (strain DSM 4184

Query: 9 PMWSGP 14
P+W GP
Sbjct: 154 PLWHGP 159


>sp|Y3510_METJA|UNCHARACTERIZED protein MJECL10|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 KGDRPMWSG 13
K D+ WSG
Sbjct: 128 KSDKNSWSG 136


>sp|SYFB_METST|PHENYLALANINE--TRNA ligase beta subunit|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 QNHSKGDR 8
+NH KG++
Sbjct: 177 ENHEKGEK 184


>sp|TIAS_METLZ|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Methanocorpusculum labreanum

Query: 5 KGDRPMWS 12
+GD P W+
Sbjct: 220 RGDTPKWA 227


>sp|CATA_METBF|CATALASE barkeri (strain Fusaro /

Query: 5 KGDRPMWS 12
KGD P W+
Sbjct: 254 KGDYPSWT 261




THE END