NDUA6_HUMAN Blast Output
Archaea
1|Sequence|1|10|MAGSGVRQAT

>sp|RISC_METJA|RIBOFLAVIN synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MAGSGVRQA 9
MAG G+RQ
Sbjct: 139 MAGKGLRQG 147


>sp|TRUA_METBU|TRNA pseudouridine synthase A|Methanococcoides burtonii (strain DSM 6242

Query: 1 MAGSGVR 7
M GSGVR
Sbjct: 189 MVGSGVR 195


>sp|TRM1_METJA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanocaldococcus

Query: 1 MAGSGVR 7
+AGSG+R
Sbjct: 60 LAGSGIR 66


>sp|PYRB_HALMA|ASPARTATE carbamoyltransferase catalytic subunit|Haloarcula marismortui

Query: 2 AGSGVRQAT 10
AG+G+R+ T
Sbjct: 200 AGAGIREHT 208




2|Sequence|6|15|VRQATSTAST

***** No hits found ******


3|Sequence|11|20|STASTFVKPI

***** No hits found ******


4|Sequence|16|25|FVKPIFSRDM

>sp|FTHS_PICTO|FORMATE--TETRAHYDROFOLATE ligase|Picrophilus torridus (strain ATCC 700027

Query: 4 PIFSRDM 10
PIF+RD+
Sbjct: 217 PIFARDL 223


>sp|AROE_METAR|SHIKIMATE dehydrogenase (NADP(+))|Methanocella arvoryzae (strain DSM 22066

Query: 3 KPIFSRDM 10
KP+ +RDM
Sbjct: 196 KPLVTRDM 203


>sp|SYM_METLZ|METHIONINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 VKPIFSR 8
VKP+F+R
Sbjct: 523 VKPLFAR 529


>sp|Y1574_METJA|UNCHARACTERIZED ATP-dependent helicase MJ1574|Methanocaldococcus jannaschii (strain

Query: 1 FVKPIFSRD 9
FVK +F+RD
Sbjct: 227 FVKLLFNRD 235


>sp|HIS8_META3|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 VKPIFS 7
VKPIFS
Sbjct: 253 VKPIFS 258


>sp|HIS8_METJA|HISTIDINOL-PHOSPHATE aminotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VKPIFS 7
VKPIFS
Sbjct: 256 VKPIFS 261




5|Sequence|21|30|FSRDMNEAKR

>sp|SYP_SULTO|PROLINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 FSRDMNEAKR 10
++ D+NEAK+
Sbjct: 410 YTEDLNEAKK 419


>sp|TOP6A_SACSH|TYPE 2 DNA topoisomerase 6|Saccharolobus shibatae (strain ATCC 51178

Query: 4 DMNEAKR 10
D+NEAKR
Sbjct: 72 DLNEAKR 78


>sp|EI2BL_PYRAB|PUTATIVE translation initiation factor eIF-2B|Pyrococcus abyssi (strain

Query: 1 FSRDMNEAKR 10
F R M+EAKR
Sbjct: 88 FLRRMDEAKR 97


>sp|SYN_THEKO|ASPARAGINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 FSRDMNE 7
FS+D+NE
Sbjct: 50 FSKDLNE 56


>sp|SYA_CENSY|ALANINE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 4 DMNEAKR 10
D+NEA+R
Sbjct: 302 DLNEARR 308


>sp|SYS_METAR|SERINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 FSRDMNEAKR 10
SR++NEA++
Sbjct: 57 ISREINEARK 66


>sp|TRM1_HALLT|TRNA (guanine(26)-N(2))-dimethyltransferase|Halorubrum lacusprofundi

Query: 4 DMNEAKR 10
DM EAKR
Sbjct: 292 DMGEAKR 298


>sp|TOP6A_SULTO|TYPE 2 DNA topoisomerase 6|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 DMNEAKR 10
D+NE+KR
Sbjct: 72 DLNESKR 78




6|Sequence|26|35|NEAKRRVREL

>sp|SYR_IGNH4|ARGININE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 NEAKRRVREL 10
+EA+RRVREL
Sbjct: 446 DEAERRVREL 455


>sp|PYRG_THEAC|CTP synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 NEAKRRVREL 10
+E KRR+RE+
Sbjct: 119 DEIKRRIREV 128


>sp|PYRG_PYRFU|CTP synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 NEAKRRVREL 10
+E KRR+RE+
Sbjct: 120 DEIKRRIREI 129


>sp|PYRG_PYRHO|CTP synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 NEAKRRVREL 10
+E KRR+RE+
Sbjct: 120 DEIKRRIREI 129


>sp|AATE3_METHJ|A-TYPE ATP synthase subunit E|Methanospirillum hungatei JF-1 (strain

Query: 2 EAKRRVREL 10
EAKR+VRE+
Sbjct: 69 EAKRKVREV 77


>sp|PYRG_HALSA|CTP synthase|Halobacterium salinarum (strain ATCC 700922

Query: 1 NEAKRRVRE 9
++ KRRVRE
Sbjct: 131 DDIKRRVRE 139


>sp|PYRG_HALS3|CTP synthase|Halobacterium salinarum (strain ATCC 29341

Query: 1 NEAKRRVRE 9
++ KRRVRE
Sbjct: 131 DDIKRRVRE 139


>sp|HPPA2_METMA|K(+)-INSENSITIVE pyrophosphate-energized proton pump|Methanosarcina mazei (strain

Query: 1 NEAKRRVREL 10
NE +R+ RE+
Sbjct: 522 NEVRRQFREI 531


>sp|HPPA2_METAC|K(+)-INSENSITIVE pyrophosphate-energized proton pump|Methanosarcina acetivorans

Query: 1 NEAKRRVREL 10
NE +R+ RE+
Sbjct: 522 NEVRRQFREI 531


>sp|PYRG_PYRAB|CTP synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 NEAKRRVREL 10
+E KRR+RE+
Sbjct: 120 DEIKRRIREI 129


>sp|SYR_PYRAB|ARGININE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 NEAKRRVREL 10
NEA +R REL
Sbjct: 442 NEAIKRAREL 451


>sp|PYRG_NATPD|CTP synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 NEAKRRVRE 9
++ KRR+RE
Sbjct: 132 DDIKRRIRE 140


>sp|HISX_PICTO|HISTIDINOL dehydrogenase|Picrophilus torridus (strain ATCC 700027

Query: 1 NEAKRRV 7
NEAKR+V
Sbjct: 185 NEAKRQV 191


>sp|SYR_THEKO|ARGININE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 NEAKRRVREL 10
NEA +R REL
Sbjct: 455 NEAVQRAREL 464


>sp|DAPAT_METMP|LL-DIAMINOPIMELATE aminotransferase|Methanococcus maripaludis (strain DSM 14266

Query: 1 NEAKRRVREL 10
NE KRR+ E+
Sbjct: 402 NEVKRRLTEV 411


>sp|PGK_PYRAE|PHOSPHOGLYCERATE kinase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 EAKRRVREL 10
EA+R+++EL
Sbjct: 103 EARRQIKEL 111


>sp|SAV_SULAC|PROTEIN SAV|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 EAKRRVREL 10
EAK+++RE+
Sbjct: 219 EAKQKIREI 227


>sp|PYRG_HALWD|CTP synthase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 NEAKRRVRE 9
++ KRR+RE
Sbjct: 133 DDIKRRIRE 141


>sp|PYRG_HALHT|CTP synthase|Haloarcula hispanica (strain ATCC 33960

Query: 1 NEAKRRVRE 9
++ KRR+RE
Sbjct: 133 DDIKRRIRE 141


>sp|PYRG_HALMA|CTP synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 NEAKRRVRE 9
++ KRR+RE
Sbjct: 133 DDIKRRIRE 141


>sp|FEN_PYRNV|FLAP endonuclease 1|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 EAKRRVRE 9
EA+RRV+E
Sbjct: 96 EARRRVKE 103


>sp|SYR_PYRAR|ARGININE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 EAKRRVREL 10
EAKR VRE+
Sbjct: 274 EAKRVVREV 282


>sp|SYI_PYRAB|ISOLEUCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 NEAKRRVREL 10
NE R+V+EL
Sbjct: 26 NEIYRKVKEL 35




7|Sequence|31|40|RVRELYRAWY

>sp|PUS10_METV3|TRNA pseudouridine synthase Pus10|Methanococcus voltae (strain ATCC

Query: 1 RVRELYRAW 9
RVR +Y+AW
Sbjct: 448 RVRNIYKAW 456


>sp|TRPB2_ARCFU|TRYPTOPHAN synthase beta chain 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 VRELYRAW 9
VRE+YR W
Sbjct: 73 VREIYRIW 80


>sp|ARGC_METVS|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanococcus vannielii (strain ATCC 35089

Query: 4 ELYRAWY 10
E+Y AWY
Sbjct: 109 EMYEAWY 115


>sp|IDI2_NATPD|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 RVRELYRAW 9
RV EL+R W
Sbjct: 246 RVGELFREW 254


>sp|LYSY_PICTO|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 4 ELYRAWY 10
+LYR WY
Sbjct: 107 DLYREWY 113


>sp|LYSY_SACS2|[LYSW]-L-2-AMINOADIPATE/[LYSW]-L-GLUTAMATE phosphate reductase|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 ELYRAWY 10
ELY+ WY
Sbjct: 111 ELYKIWY 117


>sp|ARGC_METM7|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanococcus maripaludis (strain C7 /

Query: 4 ELYRAWY 10
E+Y +WY
Sbjct: 109 EMYESWY 115


>sp|ARGC_METM6|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanococcus maripaludis (strain C6 /

Query: 4 ELYRAWY 10
E+Y +WY
Sbjct: 109 EMYESWY 115


>sp|ARGC_METM5|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanococcus maripaludis (strain C5 /

Query: 4 ELYRAWY 10
E+Y +WY
Sbjct: 109 EMYESWY 115


>sp|KTHY_METAC|PROBABLE thymidylate kinase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 VRELYRAW 9
VR+L+R W
Sbjct: 117 VRDLHRGW 124


>sp|LYSY_SULAC|[LYSW]-L-2-AMINOADIPATE/[LYSW]-L-GLUTAMATE phosphate reductase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 ELYRAWY 10
ELY+ WY
Sbjct: 108 ELYKLWY 114


>sp|DCDA_METTH|DIAMINOPIMELATE decarboxylase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 RVRELYRAWY 10
R+RE YR Y
Sbjct: 38 RIRENYRRLY 47


>sp|END4_NATPD|PROBABLE endonuclease 4|Natronomonas pharaonis (strain ATCC 35678

Query: 1 RVRELY 6
RVRELY
Sbjct: 270 RVRELY 275


>sp|TOP1_PYRFU|DNA topoisomerase 1|Pyrococcus furiosus (strain ATCC 43587

Query: 3 RELYRAWY 10
R+L +AWY
Sbjct: 142 RDLIKAWY 149


>sp|RFCL_NANEQ|REPLICATION factor C large subunit|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 RVRELYRAWY 10
R+ ++YRA+Y
Sbjct: 301 RLDDIYRAYY 310


>sp|SYTE_AERPE|THREONINE--TRNA ligase editing subunit|Aeropyrum pernix (strain ATCC 700893

Query: 1 RVRELYRAW 9
RVRE R+W
Sbjct: 357 RVREAGRSW 365


>sp|Y700_METJA|UNCHARACTERIZED MscS family protein MJ0700|Methanocaldococcus jannaschii (strain

Query: 2 VRELYRAW 9
+RELY W
Sbjct: 237 MRELYEKW 244


>sp|ARGC_METMP|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanococcus maripaludis (strain DSM 14266

Query: 4 ELYRAWY 10
++Y +WY
Sbjct: 109 DMYESWY 115


>sp|TDXH2_PICTO|PEROXIREDOXIN 2|Picrophilus torridus (strain ATCC 700027

Query: 1 RVRELYRAWY 10
R+RE + WY
Sbjct: 188 RIREGNKTWY 197


>sp|LYSY_SULTO|[LYSW]-L-2-AMINOADIPATE/[LYSW]-L-GLUTAMATE phosphate reductase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 LYRAWY 10
LY+ WY
Sbjct: 109 LYKIWY 114


>sp|GLPK_THEON|GLYCEROL kinase|Thermococcus onnurineus (strain NA1)

Query: 3 RELYRAW 9
R+LYR W
Sbjct: 471 RKLYRGW 477




8|Sequence|36|45|YRAWYREVPN

>sp|AROC_PYRCJ|CHORISMATE synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 YRAWYREVPN 10
+RAW++ P+
Sbjct: 294 FRAWFKPTPS 303


>sp|SYR_HALLT|ARGININE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 YRAWYREVP 9
Y A+YRE P
Sbjct: 555 YNAFYRECP 563


>sp|AROC_PYRNV|CHORISMATE synthase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 YRAWYREVPN 10
+RAW++ P+
Sbjct: 294 FRAWFKPTPS 303


>sp|Y1571_AERPE|UNCHARACTERIZED protein APE_1571.1|Aeropyrum pernix (strain ATCC 700893

Query: 2 RAWYREVP 9
R W+RE P
Sbjct: 304 RVWHREEP 311


>sp|RFCS_METVS|REPLICATION factor C small subunit|Methanococcus vannielii (strain ATCC 35089

Query: 5 YREVPN 10
+REVPN
Sbjct: 267 FREVPN 272


>sp|RFCS_METMP|REPLICATION factor C small subunit|Methanococcus maripaludis (strain DSM 14266

Query: 5 YREVPN 10
+REVPN
Sbjct: 267 FREVPN 272


>sp|RFCS_METM7|REPLICATION factor C small subunit|Methanococcus maripaludis (strain C7 /

Query: 5 YREVPN 10
+REVPN
Sbjct: 267 FREVPN 272


>sp|RFCS_METM6|REPLICATION factor C small subunit|Methanococcus maripaludis (strain C6 /

Query: 5 YREVPN 10
+REVPN
Sbjct: 267 FREVPN 272


>sp|RFCS_METM5|REPLICATION factor C small subunit|Methanococcus maripaludis (strain C5 /

Query: 5 YREVPN 10
+REVPN
Sbjct: 267 FREVPN 272


>sp|PTH_PYRFU|PEPTIDYL-TRNA hydrolase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 YRAWYRE 7
+ AW+RE
Sbjct: 45 FEAWFRE 51


>sp|ANTRB_HALVD|PUTATIVE ABC transporter anion-binding protein|Haloferax volcanii (strain

Query: 4 WYREV 8
WYRE+
Sbjct: 192 WYREI 196


>sp|Y043_METJA|UNCHARACTERIZED protein MJ0043|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 RAWYREVPN 10
RAW + +PN
Sbjct: 370 RAWNKALPN 378


>sp|PTH_PYRHO|PEPTIDYL-TRNA hydrolase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 YRAWYRE 7
+ AW+RE
Sbjct: 47 FEAWFRE 53


>sp|SYP_METLZ|PROLINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 YRAWYREV 8
+ AWY EV
Sbjct: 14 FSAWYNEV 21


>sp|SYR_HALMA|ARGININE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 YRAWYREVP 9
+ A+YRE P
Sbjct: 533 FNAFYRECP 541


>sp|RGYR_PYRFU|REVERSE gyrase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 WYREVPN 10
WY E+P+
Sbjct: 543 WYIEIPD 549


>sp|DHYS_IGNH4|PROBABLE deoxyhypusine synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 AWYREVP 9
AW R+VP
Sbjct: 178 AWERKVP 184


>sp|SYP_ARCFU|PROLINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 AWYREVPN 10
W+ EVP+
Sbjct: 438 GWFEEVPD 445


>sp|PURL_PYRNV|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 RAWYREVPN 10
R W RE+P
Sbjct: 41 RRWLRELPG 49


>sp|KATG_METB6|CATALASE-PEROXIDASE boonei (strain DSM 21154

Query: 1 YRAWYREVPN 10
YR W+ PN
Sbjct: 24 YRDWWPNQPN 33


>sp|CAS6B_METJA|CRISPR-ASSOCIATED endoribonuclease Cas6 2|Methanocaldococcus jannaschii (strain ATCC

Query: 1 YRAWYREVP 9
Y+A+Y E P
Sbjct: 155 YKAFYNEEP 163


>sp|GLCAE_SULTO|D-GLUCOSAMINE-6-PHOSPHATE 4-epimerase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 YRAWYREVP 9
Y A+Y E+P
Sbjct: 202 YPAFYNELP 210


>sp|OGG1_METS5|8-OXOGUANINE DNA glycosylase/AP lyase|Metallosphaera sedula (strain ATCC 51363

Query: 2 RAWYREV 8
R W+RE+
Sbjct: 31 RVWFREL 37


>sp|Y957_METJA|UNCHARACTERIZED protein MJ0957|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 WYREVPN 10
W +E+PN
Sbjct: 275 WIKEIPN 281


>sp|PIMT_THESM|PROTEIN-L-ISOASPARTATE O-methyltransferase|Thermococcus sibiricus (strain DSM 12597

Query: 1 YRAWYREVPN 10
YR W R V N
Sbjct: 7 YRKWMRLVEN 16


>sp|Y611_METJA|PUTATIVE zinc metalloprotease MJ0611|Methanocaldococcus jannaschii (strain

Query: 1 YRAWY 5
+RAWY
Sbjct: 66 FRAWY 70


>sp|RGYR_THEKO|REVERSE gyrase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 WYREVPN 10
WY E+P+
Sbjct: 546 WYIEIPD 552




9|Sequence|41|50|REVPNTVHQF

>sp|HDRC_METTH|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit C|Methanothermobacter

Query: 2 EVPNTVHQF 10
E+P T HQF
Sbjct: 147 ELPPTTHQF 155


>sp|HDRC_METTM|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit C|Methanothermobacter

Query: 2 EVPNTVHQF 10
E+P T HQF
Sbjct: 147 ELPPTTHQF 155


>sp|SPSS_METKA|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 REVPNTVH 8
REVPNT H
Sbjct: 124 REVPNTGH 131


>sp|PYRE_CENSY|OROTATE phosphoribosyltransferase|Cenarchaeum symbiosum (strain A)

Query: 1 REVPNTVHQF 10
R VP+ HQF
Sbjct: 37 RSVPSHPHQF 46


>sp|NASD_HALMT|ASSIMILATORY ferredoxin-dependent nitrite reductase|Haloferax mediterranei

Query: 2 EVPNTVHQF 10
EVP+ VHQ
Sbjct: 440 EVPDDVHQL 448


>sp|AGLB3_ARCFU|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase 3|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 REVPNTVHQF 10
R + NT+H F
Sbjct: 53 RLIENTIHNF 62


>sp|FEN_METMA|FLAP endonuclease 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 NTVHQF 10
NT+HQF
Sbjct: 30 NTLHQF 35


>sp|FEN_METAC|FLAP endonuclease 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 NTVHQF 10
NT+HQF
Sbjct: 30 NTLHQF 35


>sp|FEN_METBF|FLAP endonuclease 1|Methanosarcina barkeri (strain Fusaro /

Query: 5 NTVHQF 10
NT+HQF
Sbjct: 30 NTLHQF 35


>sp|HDRC_METKA|COB--COM heterodisulfide reductase iron-sulfur subunit|Methanopyrus kandleri

Query: 2 EVPNTVHQF 10
EVP T H++
Sbjct: 153 EVPPTTHRY 161


>sp|SYS_METS5|SERINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 1 REVPNTVHQ 9
R +PN VH+
Sbjct: 102 RTLPNVVHE 110


>sp|DNAG_STAMF|DNA primase DnaG|Staphylothermus marinus (strain ATCC 43588

Query: 1 REVPNTV 7
R+VPNT+
Sbjct: 195 RKVPNTI 201


>sp|HDRC1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit C1|Methanococcus

Query: 2 EVPNTVHQF 10
E+P T H++
Sbjct: 145 EIPPTTHKY 153


>sp|HDRC1_METJA|COB--COM heterodisulfide reductase iron-sulfur subunit|Methanocaldococcus

Query: 2 EVPNTVHQF 10
E+P T H++
Sbjct: 147 EIPPTTHKY 155


>sp|CYSO_AERPE|PROTEIN CysO|Aeropyrum pernix (strain ATCC 700893

Query: 2 EVPNTVH 8
E P+TVH
Sbjct: 199 EAPSTVH 205


>sp|DLYKI_THEX4|D-LYXOSE ketol-isomerase|Thermofilum sp. (strain ex4484_79)

Query: 4 PNTVHQF 10
PNT+H F
Sbjct: 139 PNTLHWF 145


>sp|Y954_METJA|UNCHARACTERIZED protein MJ0954|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EVPNTVHQF 10
+V NTVH F
Sbjct: 311 KVNNTVHVF 319


>sp|Y1511_METMJ|UPF0316 protein Memar_1511|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 REVPNTVHQF 10
R+V + +H+F
Sbjct: 151 RDVEDAIHEF 160


>sp|SYL_HALSA|LEUCINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 EVPNTVH 8
EVP TVH
Sbjct: 234 EVPFTVH 240


>sp|RS4E_METJA|SMALL ribosomal subunit protein eS4|Methanocaldococcus jannaschii

Query: 2 EVPNTVHQF 10
E+P +H+F
Sbjct: 20 ELPRKIHKF 28


>sp|SYS_NITMS|SERINE--TRNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 3 VPNTVHQ 9
VPN VH+
Sbjct: 103 VPNLVHE 109




10|Sequence|46|55|TVHQFQLDIT

>sp|Y1314_PYRHO|UPF0128 protein PH1314|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 TVHQFQLDI 9
T+H F +DI
Sbjct: 205 TLHLFDIDI 213




11|Sequence|51|60|QLDITVKMGR

>sp|Y1427_HALMA|UNCHARACTERIZED protein rrnAC1427|Haloarcula marismortui (strain ATCC 43049

Query: 1 QLDITVKMGR 10
+ DIT+ +GR
Sbjct: 69 ETDITIAIGR 78


>sp|Y725_METJA|UNCHARACTERIZED protein MJ0725|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 QLDITVKMG 9
Q D+T+K+G
Sbjct: 98 QFDLTLKVG 106


>sp|PDXS_SULTO|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Sulfurisphaera tokodaii (strain

Query: 2 LDITVKMGR 10
+++TVK+GR
Sbjct: 216 VELTVKLGR 224


>sp|SYTC_AERPE|THREONINE--TRNA ligase catalytic subunit|Aeropyrum pernix (strain ATCC 700893

Query: 1 QLDITVK 7
+LDITVK
Sbjct: 15 ELDITVK 21


>sp|BACR2_HALS2|ARCHAERHODOPSIN-2 sp. (strain aus-2)

Query: 2 LDITVKMG 9
LD+T K+G
Sbjct: 222 LDVTAKVG 229


>sp|BACR1_HALSS|ARCHAERHODOPSIN-1 sp. (strain SG1)

Query: 2 LDITVKMG 9
LD+T K+G
Sbjct: 223 LDVTAKVG 230


>sp|BACR1_HALEZ|ARCHAERHODOPSIN-1 ezzemoulense (Halorubrum chaoviator)

Query: 2 LDITVKMG 9
LD+T K+G
Sbjct: 223 LDVTAKVG 230


>sp|BACR3_HALSD|ARCHAERHODOPSIN-3 sodomense

Query: 2 LDITVKMG 9
LD+T K+G
Sbjct: 221 LDVTAKVG 228




12|Sequence|56|65|VKMGRDKVRE

>sp|GCSPB_PYRFU|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Pyrococcus furiosus

Query: 3 MGRDKVRE 10
MGRD +RE
Sbjct: 346 MGRDGLRE 353


>sp|Y614_PYRHO|UNCHARACTERIZED protein PH0614|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 VKMGRDKV 8
+++GRDKV
Sbjct: 75 IQLGRDKV 82


>sp|GLYA_PYRIL|SERINE hydroxymethyltransferase|Pyrobaculum islandicum (strain DSM 4184

Query: 3 MGRDKVRE 10
MG+D++RE
Sbjct: 370 MGKDEMRE 377


>sp|YR33_THEPE|UNCHARACTERIZED 33.4 kDa protein in|Thermofilum pendens

Query: 1 VKMGRDKVRE 10
V MGR++VR
Sbjct: 28 VAMGRNRVRH 37


>sp|GLYA_PYRNV|SERINE hydroxymethyltransferase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 MGRDKVRE 10
MG+D++RE
Sbjct: 370 MGKDEMRE 377


>sp|DNLI1_THEPD|DNA ligase 1|Thermofilum pendens (strain DSM 2475

Query: 1 VKMGRDKVR 9
+ MGR KVR
Sbjct: 231 IHMGRGKVR 239


>sp|TRUA_THEGJ|TRNA pseudouridine synthase A|Thermococcus gammatolerans (strain DSM

Query: 4 GRDKVRE 10
GRD VRE
Sbjct: 147 GRDPVRE 153


>sp|Y1520_METJA|UNCHARACTERIZED protein MJ1520|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VKMGRDKVR 9
+ MG+D+VR
Sbjct: 201 IPMGKDRVR 209


>sp|GLYA_PYRAR|SERINE hydroxymethyltransferase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 MGRDKVRE 10
MG+D++RE
Sbjct: 369 MGKDEMRE 376


>sp|GLYA_PYRCJ|SERINE hydroxymethyltransferase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 MGRDKVRE 10
MG+D++RE
Sbjct: 370 MGKDEMRE 377


>sp|Y1435_PYRAB|UNCHARACTERIZED protein PYRAB14350|Pyrococcus abyssi (strain GE5 /

Query: 1 VKMGRDKV 8
+++GRDK+
Sbjct: 75 IQLGRDKI 82




13|Sequence|61|70|DKVREMFMKN

>sp|SPEH_PYRAB|S-ADENOSYLMETHIONINE decarboxylase proenzyme|Pyrococcus abyssi (strain GE5 /

Query: 1 DKVREMFMK 9
DK+RE+F++
Sbjct: 24 DKIREIFLE 32


>sp|FEN_HALSA|FLAP endonuclease 1|Halobacterium salinarum (strain ATCC 700922

Query: 1 DKVREMFM 8
D++RE+F+
Sbjct: 264 DRIRELFL 271


>sp|FEN_HALS3|FLAP endonuclease 1|Halobacterium salinarum (strain ATCC 29341

Query: 1 DKVREMFM 8
D++RE+F+
Sbjct: 264 DRIRELFL 271


>sp|FEN_NATPD|FLAP endonuclease 1|Natronomonas pharaonis (strain ATCC 35678

Query: 1 DKVREMFM 8
D++RE+F+
Sbjct: 265 DRIRELFL 272


>sp|SYP_PYRFU|PROLINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 DKVREMF 7
DKVRE+F
Sbjct: 378 DKVRELF 384


>sp|SYP_PYRHO|PROLINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 DKVREMF 7
DKVRE+F
Sbjct: 378 DKVRELF 384


>sp|SYP_PYRAB|PROLINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 DKVREMF 7
DKVRE+F
Sbjct: 378 DKVRELF 384


>sp|SPEH_THEGJ|S-ADENOSYLMETHIONINE decarboxylase proenzyme|Thermococcus gammatolerans (strain DSM

Query: 1 DKVREMFMK 9
D++RE+F++
Sbjct: 27 DRIREIFLE 35


>sp|Y1344_THEON|UPF0200 protein TON_1344|Thermococcus onnurineus (strain NA1)

Query: 1 DKVREMFMKN 10
+KVRE+ KN
Sbjct: 72 EKVRELLRKN 81


>sp|PIMT_THEON|PROTEIN-L-ISOASPARTATE O-methyltransferase|Thermococcus onnurineus (strain NA1)

Query: 1 DKVREMFMK 9
+KVR+ F+K
Sbjct: 26 EKVRQAFLK 34


>sp|Y094_METJA|UNCHARACTERIZED protein MJ0094|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 DKVREMFMKN 10
DK+RE+ +KN
Sbjct: 264 DKIREVKVKN 273


>sp|Y007_METJA|PUTATIVE dehydratase subunit MJ0007|Methanocaldococcus jannaschii (strain

Query: 1 DKVREMFMK 9
+KVRE+F K
Sbjct: 169 NKVRELFYK 177


>sp|SYC_THEAC|CYSTEINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 DKVREMFMKN 10
D++R++ +KN
Sbjct: 429 DRIRDLLLKN 438


>sp|TOP6B_PYRHO|TYPE 2 DNA topoisomerase 6|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 DKVREMFMK 9
+K+RE F+K
Sbjct: 535 EKIREYFLK 543


>sp|ACD2_ARCFU|ACETATE--COA ligase [ADP-forming] II|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 DKVREMFMK 9
D+VRE+F +
Sbjct: 68 DEVREVFQR 76


>sp|Y202_METJA|UNCHARACTERIZED protein MJ0202|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 DKVREM 6
DKVREM
Sbjct: 99 DKVREM 104




14|Sequence|66|75|MFMKNAHVTD

>sp|ASD_METMA|PUTATIVE archaetidylserine decarboxylase proenzyme|Methanosarcina mazei

Query: 1 MFMKNAHV 8
MF++N HV
Sbjct: 85 MFLQNVHV 92


>sp|Y398_ARCFU|UNCHARACTERIZED protein AF_0398|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 NAHVTD 10
NAH+TD
Sbjct: 119 NAHITD 124


>sp|ASD_METAC|PUTATIVE archaetidylserine decarboxylase proenzyme|Methanosarcina

Query: 1 MFMKNAHV 8
MF++N HV
Sbjct: 85 MFLQNVHV 92


>sp|ASD_METBF|PUTATIVE archaetidylserine decarboxylase proenzyme|Methanosarcina barkeri

Query: 1 MFMKNAHV 8
MF++N HV
Sbjct: 84 MFLQNVHV 91


>sp|Y1540_METJA|UNCHARACTERIZED protein MJ1540|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MFMKNAHVTD 10
+F+KN +TD
Sbjct: 114 IFLKNIKITD 123


>sp|RADA_METBU|DNA repair and recombination protein|Methanococcoides burtonii (strain

Query: 2 FMKNAHV 8
F+KN HV
Sbjct: 171 FLKNIHV 177




15|Sequence|71|80|AHVTDPRVVD

>sp|Y1303_METHJ|UPF0182 protein Mhun_1303|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 HVTDPRV 8
H+TDPRV
Sbjct: 664 HMTDPRV 670


>sp|PRIS_METBU|DNA primase small subunit PriS|Methanococcoides burtonii (strain DSM

Query: 2 HVTDPRVV 9
H++DPRV+
Sbjct: 153 HISDPRVL 160


>sp|SRP54_METAC|SIGNAL recognition particle 54 kDa|Methanosarcina acetivorans (strain ATCC

Query: 3 VTDPRVV 9
+TDPRV+
Sbjct: 381 MTDPRVI 387


>sp|LEUC_SACS2|3-ISOPROPYLMALATE dehydratase large subunit|Saccharolobus solfataricus (strain ATCC

Query: 3 VTDPRVV 9
+TDPRV+
Sbjct: 410 ITDPRVI 416


>sp|APE2_SACS2|LEUCYL aminopeptidase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 AHVTDPRVVD 10
AHV DP V+
Sbjct: 342 AHVRDPNEVE 351


>sp|AK_METJA|PROBABLE aspartokinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 HVTDPRVV 9
+ TDPR+V
Sbjct: 236 YTTDPRLV 243


>sp|APE1_SACS2|PROBABLE aminopeptidase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 AHVTDPRVVD 10
AHV DP ++
Sbjct: 340 AHVKDPHEIE 349


>sp|SECY_PYRHO|PROTEIN translocase subunit SecY|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 VTDPRVVD 10
+TDP ++D
Sbjct: 197 LTDPNIID 204


>sp|SECY_PYRFU|PROTEIN translocase subunit SecY|Pyrococcus furiosus (strain ATCC 43587

Query: 3 VTDPRVVD 10
+TDP ++D
Sbjct: 197 LTDPNIID 204


>sp|SECY_PYRAB|PROTEIN translocase subunit SecY|Pyrococcus abyssi (strain GE5 /

Query: 3 VTDPRVVD 10
+TDP ++D
Sbjct: 197 LTDPNIID 204


>sp|HACA_METAC|PROBABLE methanogen homoaconitase large subunit|Methanosarcina acetivorans

Query: 1 AHVTDPRVV 9
+TDPR V
Sbjct: 416 GEITDPRTV 424


>sp|PRIS_METMA|DNA primase small subunit PriS|Methanosarcina mazei (strain ATCC

Query: 2 HVTDPRVV 9
H+T P+V+
Sbjct: 153 HITSPKVL 160


>sp|APE2_SULTO|PROBABLE aminopeptidase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 AHVTDPRVVD 10
AHVT P ++
Sbjct: 341 AHVTSPEEIE 350


>sp|PHR_METTH|DEOXYRIBODIPYRIMIDINE photo-lyase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 HVTDPR 7
HV DPR
Sbjct: 315 HVADPR 320


>sp|RS2_THEPD|SMALL ribosomal subunit protein uS2|Thermofilum pendens (strain DSM 2475

Query: 3 VTDPRV 8
VTDPRV
Sbjct: 125 VTDPRV 130


>sp|RS5_SULTO|SMALL ribosomal subunit protein uS5|Sulfurisphaera tokodaii (strain DSM

Query: 3 VTDPRVVD 10
+T+P +VD
Sbjct: 41 ITEPEIVD 48


>sp|RS5_SACI1|SMALL ribosomal subunit protein uS5|Saccharolobus islandicus (strain

Query: 3 VTDPRVVD 10
+T+P +VD
Sbjct: 41 ITEPEIVD 48


>sp|RSMA_METHJ|PROBABLE ribosomal RNA small subunit|Methanospirillum hungatei JF-1

Query: 3 VTDPRVV 9
+TDPR+V
Sbjct: 10 LTDPRIV 16


>sp|RS5_SACS2|SMALL ribosomal subunit protein uS5|Saccharolobus solfataricus (strain

Query: 3 VTDPRVVD 10
+T+P +VD
Sbjct: 41 ITEPEIVD 48


>sp|KITH_HALWD|THYMIDINE kinase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 AHVTDPRVV 9
AH+ DP +V
Sbjct: 197 AHIDDPTIV 205


>sp|PGP_METTH|PHOSPHOGLYCOLATE phosphatase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 HVTDPRV 8
H+TDP V
Sbjct: 140 HLTDPSV 146


>sp|DP2L_NATPD|DNA polymerase II large subunit|Natronomonas pharaonis (strain ATCC

Query: 3 VTDPRVV 9
VTDPR V
Sbjct: 718 VTDPRYV 724




16|Sequence|76|85|PRVVDLLVIK

>sp|COXX1_CENSY|PROTOHEME IX farnesyltransferase 1|Cenarchaeum symbiosum (strain A)

Query: 1 PRVVDLLVI 9
PR+V LLVI
Sbjct: 12 PRIVLLLVI 20


>sp|KAE1B_METS3|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 RVVDLLVIK 10
+ VDLLV+K
Sbjct: 482 KAVDLLVLK 490


>sp|SUI1_METHJ|PROTEIN translation factor SUI1 homolog|Methanospirillum hungatei JF-1

Query: 2 RVVDLLVIK 10
RV+DLL K
Sbjct: 85 RVIDLLATK 93


>sp|PRNK_PYRAB|POLYRIBONUCLEOTIDE 5'-hydroxyl-kinase PYRAB01840|Pyrococcus abyssi (strain GE5 /

Query: 1 PRVVDLLVIK 10
PR+VD V+K
Sbjct: 271 PRIVDKNVVK 280


>sp|IF2A_THEVO|TRANSLATION initiation factor 2 subunit|Thermoplasma volcanium (strain ATCC

Query: 1 PRVVDLLVIK 10
P V DL+V+K
Sbjct: 7 PEVGDLVVVK 16


>sp|RS5_METMJ|SMALL ribosomal subunit protein uS5|Methanoculleus marisnigri (strain

Query: 1 PRVVDLLV 8
P++VDLL+
Sbjct: 39 PQIVDLLL 46




17|Sequence|81|90|LLVIKGKIEL

>sp|SPEE_ARCFU|POLYAMINE aminopropyltransferase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LLVIKGKIEL 10
+LVI GKI+L
Sbjct: 41 MLVIDGKIQL 50


>sp|RADA_CENSY|DNA repair and recombination protein|Cenarchaeum symbiosum (strain A)

Query: 2 LVIKGKIEL 10
LV++G +EL
Sbjct: 33 LVVRGPVEL 41


>sp|APE1_SACS2|PROBABLE aminopeptidase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 LVIKGKIE 9
LVI GKIE
Sbjct: 61 LVIYGKIE 68


>sp|Y3521_METJA|UNCHARACTERIZED protein MJECL21|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LVIKGKIEL 10
L++KG+IE+
Sbjct: 414 LILKGEIEI 422


>sp|AATC_METJA|A-TYPE ATP synthase subunit C|Methanocaldococcus jannaschii (strain ATCC

Query: 3 VIKGKIE 9
+IKGKIE
Sbjct: 379 IIKGKIE 385


>sp|RNZ_THESM|RIBONUCLEASE Z|Thermococcus sibiricus (strain DSM 12597

Query: 2 LVIKGKIEL 10
L IKGKIE+
Sbjct: 174 LEIKGKIEI 182




18|Sequence|86|95|GKIELEETIK

>sp|HIS4_METPE|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanosphaerula palustris

Query: 1 GKIELEETIK 10
GKI LEE +K
Sbjct: 224 GKITLEEALK 233


>sp|PUR7_HALSA|PUTATIVE phosphoribosylaminoimidazole-succinocarboxamide

Query: 1 GKIELEETI 9
G +EL ETI
Sbjct: 158 GPVELPETI 166


>sp|HPRT_METSF|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanocaldococcus sp. (strain

Query: 1 GKIELEETIK 10
G++ LEET+K
Sbjct: 10 GRLLLEETLK 19




19|Sequence|91|100|EETIKVWKQR

>sp|RL10_HALMA|LARGE ribosomal subunit protein uL10|Haloarcula marismortui (strain

Query: 2 ETIKVWKQ 9
ETI WKQ
Sbjct: 10 ETIPEWKQ 17


>sp|RL10_NATPD|LARGE ribosomal subunit protein uL10|Natronomonas pharaonis (strain

Query: 2 ETIKVWKQ 9
ETI WKQ
Sbjct: 9 ETIPEWKQ 16


>sp|HBCL1_METS5|4-HYDROXYBUTYRATE--COA ligase 1|Metallosphaera sedula (strain ATCC 51363

Query: 2 ETIKVWKQR 10
E IK+WK +
Sbjct: 328 EVIKIWKDK 336


>sp|RL18E_THEKO|LARGE ribosomal subunit protein eL18|Thermococcus kodakarensis (strain

Query: 1 EETIKVWK 8
EE +K+WK
Sbjct: 25 EEGVKIWK 32


>sp|RL18E_PYRHO|LARGE ribosomal subunit protein eL18|Pyrococcus horikoshii (strain ATCC

Query: 1 EETIKVWKQ 9
EE +K+WK
Sbjct: 24 EEGVKIWKD 32


>sp|RL18E_PYRAB|LARGE ribosomal subunit protein eL18|Pyrococcus abyssi (strain GE5 /

Query: 1 EETIKVWKQ 9
EE +K+WK
Sbjct: 24 EEKVKIWKD 32


>sp|RL18E_THEON|LARGE ribosomal subunit protein eL18|Thermococcus onnurineus (strain

Query: 1 EETIKVWKQ 9
EE +K+WK
Sbjct: 24 EEGVKIWKD 32


>sp|CSM3_METTH|CRISPR system Cms endoribonuclease Csm3|Methanothermobacter

Query: 1 EETIKVWKQ 9
+ET++ WK+
Sbjct: 120 DETVEEWKE 128


>sp|SYT_PYRHO|THREONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 IKVWKQR 10
I++WKQR
Sbjct: 415 IEMWKQR 421


>sp|SYT_PYRFU|THREONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 IKVWKQR 10
I++WKQR
Sbjct: 415 IEMWKQR 421


>sp|SYT_PYRAB|THREONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 4 IKVWKQR 10
I++WKQR
Sbjct: 415 IEMWKQR 421


>sp|SYT_THEON|THREONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 4 IKVWKQR 10
I++WKQR
Sbjct: 417 IEMWKQR 423


>sp|SYT_THESM|THREONINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 4 IKVWKQR 10
I++WKQR
Sbjct: 415 IEMWKQR 421




20|Sequence|96|105|VWKQRTHVMR

>sp|SYR_THEAC|ARGININE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 VWKQRTHVMR 10
VW +RT+++R
Sbjct: 79 VWIKRTYMLR 88


>sp|DPOL_THEAG|DNA polymerase|Thermococcus aggregans

Query: 1 VWKQRTHVMR 10
+WK+ +VMR
Sbjct: 1496 IWKKVPYVMR 1505


>sp|DPOL_THEFM|DNA polymerase|Thermococcus fumicolans

Query: 1 VWKQRTHVMR 10
VWK+ +VMR
Sbjct: 955 VWKKVPYVMR 964


>sp|SYA_METJA|ALANINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WKQRTHVMR 10
WK+R +MR
Sbjct: 580 WKRRLSLMR 588


>sp|GCS2_HALWD|GLUTAMATE--CYSTEINE ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 WKQRTHVMR 10
W++R HV +
Sbjct: 108 WRERNHVEK 116


>sp|TOP3_SACS2|DNA topoisomerase 3|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 VWKQRT 6
+WK+RT
Sbjct: 631 IWKERT 636


>sp|DPOL_THELI|DNA polymerase|Thermococcus litoralis

Query: 1 VWKQRTHVMR 10
VWK +VMR
Sbjct: 1136 VWKPVPYVMR 1145


>sp|DPOL_THEHY|DNA polymerase|Thermococcus hydrothermalis

Query: 1 VWKQRTHVMR 10
VWK +VMR
Sbjct: 1099 VWKSVPYVMR 1108




21|Sequence|101|110|THVMRFFHET

>sp|OGG1_METS5|8-OXOGUANINE DNA glycosylase/AP lyase|Metallosphaera sedula (strain ATCC 51363

Query: 2 HVMRFFHE 9
H++RFF +
Sbjct: 146 HILRFFSD 153


>sp|SPSS_METKA|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanopyrus kandleri (strain AV19 /

Query: 2 HVMRFFHE 9
HV+R FHE
Sbjct: 375 HVVRAFHE 382


>sp|Y3543_METJA|UNCHARACTERIZED protein MJECL43|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 THVMRFFHE 9
TH+M F+E
Sbjct: 136 THLMSLFNE 144


>sp|SYA_HALWD|ALANINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 THVMRFFHET 10
T V+R HET
Sbjct: 914 TSVLRSMHET 923


>sp|PELO_METAC|PROTEIN pelota homolog|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 MRFFHET 10
+++FHET
Sbjct: 206 LKYFHET 212




22|Sequence|106|115|FFHETEAPRP

>sp|XYLS_SACS2|ALPHA-XYLOSIDASE solfataricus (strain ATCC 35092

Query: 2 FHETEAPRP 10
F ET+ PRP
Sbjct: 271 FDETDFPRP 279


>sp|BACR2_HALS2|ARCHAERHODOPSIN-2 sp. (strain aus-2)

Query: 4 ETEAPRP 10
ETEAP P
Sbjct: 243 ETEAPEP 249


>sp|WECBH_METMP|UDP-N-ACETYLGLUCOSAMINE 2-epimerase homolog|Methanococcus maripaludis (strain DSM 14266

Query: 1 FFHETEAPRP 10
FF E E P P
Sbjct: 46 FFDELEIPTP 55


>sp|AROE_HALWD|SHIKIMATE dehydrogenase (NADP(+))|Haloquadratum walsbyi (strain DSM 16790

Query: 2 FHETEAPR 9
FH+ E PR
Sbjct: 89 FHDGETPR 96


>sp|CAS6_PYRHO|CRISPR-ASSOCIATED endoribonuclease Cas6|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 FFHETEAPR 9
F HET+ P+
Sbjct: 45 FLHETKGPK 53


>sp|PELO_METAC|PROTEIN pelota homolog|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 FFHETE 6
+FHETE
Sbjct: 208 YFHETE 213


>sp|BACR3_HALSD|ARCHAERHODOPSIN-3 sodomense

Query: 4 ETEAPRP 10
+TEAP P
Sbjct: 242 DTEAPEP 248


>sp|BACR1_HALSS|ARCHAERHODOPSIN-1 sp. (strain SG1)

Query: 4 ETEAPRP 10
+TEAP P
Sbjct: 244 DTEAPEP 250


>sp|BACR1_HALEZ|ARCHAERHODOPSIN-1 ezzemoulense (Halorubrum chaoviator)

Query: 4 ETEAPRP 10
+TEAP P
Sbjct: 244 DTEAPEP 250


>sp|SYP_SACI7|PROLINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 141 FRYETKATRP 150


>sp|SYP_SACI2|PROLINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 141 FRYETKATRP 150


>sp|SYP_SACI1|PROLINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 141 FRYETKATRP 150


>sp|SYP_SACI6|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 141 FRYETKATRP 150


>sp|SYP_SACI4|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 141 FRYETKATRP 150


>sp|SYP_SACI3|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 141 FRYETKATRP 150


>sp|SYP_SULTO|PROLINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 141 FRYETKATRP 150


>sp|SYP_SACS2|PROLINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 141 FRYETKATRP 150


>sp|SYP_SULAC|PROLINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 141 FRYETKATRP 150


>sp|FAU1_PYRAE|PROBABLE ribonuclease FAU-1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 HETEAPR 9
HE E PR
Sbjct: 101 HEVEGPR 107


>sp|Y1526_METAR|PUTATIVE HTH-type transcriptional regulatory protein|Methanocella arvoryzae

Query: 2 FHETEAP 8
FH T+AP
Sbjct: 228 FHTTKAP 234


>sp|SYP_METS5|PROLINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 141 FRYETKATRP 150


>sp|SYP_AERPE|PROLINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 FFHETEAPRP 10
F +ET+A RP
Sbjct: 143 FRYETKATRP 152




23|Sequence|111|120|EAPRPKDFLS

>sp|EF2_DESA1|ELONGATION factor 2|Desulfurococcus amylolyticus (strain DSM 18924

Query: 1 EAPRPKDFLS 10
E P+P+DFLS
Sbjct: 726 EPPKPEDFLS 735


>sp|EF2_STAMF|ELONGATION factor 2|Staphylothermus marinus (strain ATCC 43588

Query: 1 EAPRPKDFL 9
E PRP+DF+
Sbjct: 726 EPPRPEDFI 734


>sp|EF2_METPE|ELONGATION factor 2|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 EAPRPKDFLS 10
+ PRP+D+L+
Sbjct: 721 QMPRPEDYLA 730


>sp|Y1363_METJA|UNCHARACTERIZED protein MJ1363|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 APRPKDFLS 10
APRP+D ++
Sbjct: 130 APRPEDIIA 138


>sp|EF2_METMJ|ELONGATION factor 2|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 EAPRPKDFLS 10
+ PRP D+L+
Sbjct: 721 QIPRPDDYLA 730


>sp|EF2_ARCFU|ELONGATION factor 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EAPRPKDFL 9
E P+P+DF+
Sbjct: 718 EMPKPEDFV 726


>sp|Y833_METJA|UNCHARACTERIZED protein MJ0833|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PRPKDFL 9
P+P+DFL
Sbjct: 66 PKPEDFL 72


>sp|GGR_METMA|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 PRPKDFLS 10
PRP D+L+
Sbjct: 235 PRPVDYLN 242


>sp|GGR_METBF|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanosarcina barkeri (strain Fusaro /

Query: 3 PRPKDFLS 10
PRP D+L+
Sbjct: 235 PRPVDYLN 242


>sp|GGR_METAC|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 PRPKDFLS 10
PRP D+L+
Sbjct: 235 PRPVDYLN 242


>sp|XYLS_SACS2|ALPHA-XYLOSIDASE solfataricus (strain ATCC 35092

Query: 3 PRPKDFL 9
PRPKD +
Sbjct: 277 PRPKDMV 283


>sp|EF2_METB6|ELONGATION factor 2|Methanoregula boonei (strain DSM 21154

Query: 1 EAPRPKDFLS 10
+ P P D+LS
Sbjct: 721 QMPTPSDYLS 730


>sp|EF2_METAC|ELONGATION factor 2|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 EAPRPKDFLS 10
E P+ DFLS
Sbjct: 720 ELPKASDFLS 729


>sp|EF2_METBF|ELONGATION factor 2|Methanosarcina barkeri (strain Fusaro /

Query: 1 EAPRPKDFLS 10
E P+ DFLS
Sbjct: 720 ELPKASDFLS 729


>sp|DCDA_ARCFU|DIAMINOPIMELATE decarboxylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 APRPKDFLS 10
AP PKD S
Sbjct: 244 APTPKDLAS 252


>sp|EF2_PYRAE|ELONGATION factor 2|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 EAPRPKDFL 9
E P+P DF+
Sbjct: 729 EIPKPTDFV 737


>sp|THIL_PYRCJ|THIAMINE-MONOPHOSPHATE kinase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 APRPKDFL 9
APRP D L
Sbjct: 137 APRPGDVL 144


>sp|EF2_METKA|ELONGATION factor 2|Methanopyrus kandleri (strain AV19 /

Query: 1 EAPRPKDFL 9
E P+P+D++
Sbjct: 1244 EPPKPEDYI 1252


>sp|MSMS_METAC|METHYL sulfide methyltransferase-associated sensor|Methanosarcina

Query: 5 PKDFLS 10
PKDF+S
Sbjct: 44 PKDFIS 49


>sp|EF2_DESMO|ELONGATION factor 2|Desulfurococcus mucosus (Desulfurococcus mobilis)

Query: 1 EAPRPKDFLS 10
E P+ +DFLS
Sbjct: 724 EPPKLEDFLS 733


>sp|EF2_METS5|ELONGATION factor 2|Metallosphaera sedula (strain ATCC 51363

Query: 1 EAPRPKDFLS 10
E P+ +DFLS
Sbjct: 727 ELPKVEDFLS 736


>sp|EF2_PYRIL|ELONGATION factor 2|Pyrobaculum islandicum (strain DSM 4184

Query: 1 EAPRPKDFL 9
E P+P DF+
Sbjct: 729 EIPKPTDFV 737


>sp|EF2_SACS2|ELONGATION factor 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 EAPRPKDFLS 10
E P+ +DFLS
Sbjct: 727 ELPKVEDFLS 736


>sp|EF2_PYRNV|ELONGATION factor 2|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 EAPRPKDFL 9
E P+P DF+
Sbjct: 729 EIPKPTDFV 737


>sp|EF2_SACI7|ELONGATION factor 2|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 EAPRPKDFLS 10
E P+ +DFLS
Sbjct: 727 ELPKVEDFLS 736


>sp|EF2_SACI6|ELONGATION factor 2|Saccharolobus islandicus (strain M.16.4 /

Query: 1 EAPRPKDFLS 10
E P+ +DFLS
Sbjct: 727 ELPKVEDFLS 736


>sp|EF2_SACI4|ELONGATION factor 2|Saccharolobus islandicus (strain M.14.25 /

Query: 1 EAPRPKDFLS 10
E P+ +DFLS
Sbjct: 727 ELPKVEDFLS 736


>sp|EF2_SACI3|ELONGATION factor 2|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 EAPRPKDFLS 10
E P+ +DFLS
Sbjct: 727 ELPKVEDFLS 736


>sp|EF2_SACI2|ELONGATION factor 2|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 EAPRPKDFLS 10
E P+ +DFLS
Sbjct: 727 ELPKVEDFLS 736


>sp|EF2_SACI1|ELONGATION factor 2|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 EAPRPKDFLS 10
E P+ +DFLS
Sbjct: 727 ELPKVEDFLS 736


>sp|EF2_PYRCJ|ELONGATION factor 2|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 EAPRPKDFL 9
E P+P DF+
Sbjct: 729 EIPKPTDFV 737


>sp|EF2_METTP|ELONGATION factor 2|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 EAPRPKDFL 9
E P P D+L
Sbjct: 720 EMPTPSDYL 728




24|Sequence|116|128|KDFLSKFYVGHDP

>sp|HTPX_METJA|PROTEASE HtpX homolog|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KDFLSKFYVGHDP 13
KDF++K + H P
Sbjct: 255 KDFIAKLFSTHPP 267


>sp|G1PDH_PICTO|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Picrophilus torridus (strain ATCC 700027

Query: 3 FLSKFYVGHD 12
F S Y+GHD
Sbjct: 11 FPSDVYIGHD 20


>sp|TRPA_METJA|TRYPTOPHAN synthase alpha chain|Methanocaldococcus jannaschii (strain ATCC

Query: 7 FYVGHDP 13
FYVG DP
Sbjct: 23 FYVGGDP 29


>sp|COBS_HALWD|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 FLSKFYVGHD 12
FL++ +GHD
Sbjct: 12 FLTRVPIGHD 21


>sp|ATGT_PYRHO|TRNA-GUANINE(15) transglycosylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 KDFLSKFYVGHDP 13
KD +KF + DP
Sbjct: 524 KDVFAKFVIFADP 536


>sp|SUCC_HALMA|SUCCINATE--COA ligase [ADP-forming] subunit beta|Haloarcula marismortui (strain

Query: 2 DFLSKFYVG 10
DF+++ YVG
Sbjct: 95 DFVNELYVG 103


>sp|PMDHL_AERPE|PHOSPHOMEVALONATE dehydratase large subunit|Aeropyrum pernix (strain ATCC 700893

Query: 7 FYVGHDP 13
FY HDP
Sbjct: 179 FYGAHDP 185


>sp|UVRC_METAC|UVRABC system protein C|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 KDFLSKFYVGHDP 13
++FL ++Y +DP
Sbjct: 280 QEFLVQYYSENDP 292


>sp|RADA_THEKO|DNA repair and recombination protein|Thermococcus kodakarensis (strain

Query: 1 KDFLSKFYVGHD 12
KDF+ F HD
Sbjct: 308 KDFIVSFIEDHD 319


>sp|CDC61_THEAC|PUTATIVE ORC1-type DNA replication protein|Thermoplasma acidophilum

Query: 2 DFLSKF 7
DFLSKF
Sbjct: 69 DFLSKF 74


>sp|ACDA1_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 4 LSKFYVGHDP 13
L K Y+G DP
Sbjct: 733 LHKKYLGKDP 742


>sp|Y1584_ARCFU|UNCHARACTERIZED protein AF_1584|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 DFLSKFYVG 10
DF+S YVG
Sbjct: 28 DFMSFVYVG 36


>sp|UVRC_METMA|UVRABC system protein C|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 KDFLSKFYVGHDP 13
++FL ++Y +DP
Sbjct: 286 EEFLVQYYSENDP 298


>sp|TSR3_HALSA|16S rRNA aminocarboxypropyltransferase|Halobacterium salinarum (strain

Query: 1 KDFLSKFYVGH 11
++ LSKF GH
Sbjct: 120 EELLSKFTWGH 130


>sp|TSR3_HALS3|16S rRNA aminocarboxypropyltransferase|Halobacterium salinarum (strain

Query: 1 KDFLSKFYVGH 11
++ LSKF GH
Sbjct: 120 EELLSKFTWGH 130


>sp|EF1A_CENSY|ELONGATION factor 1-alpha|Cenarchaeum symbiosum (strain A)

Query: 1 KDFLSKFYVGHDP 13
K+FL++ V H P
Sbjct: 327 KEFLAQIIVIHHP 339


>sp|Y1470_METJA|UNCHARACTERIZED protein MJ1470|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 FLSKFYVGH 11
FLS FY+G+
Sbjct: 24 FLSVFYIGY 32


>sp|SYA_METS3|ALANINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 DFLSKFY 8
+FL+KFY
Sbjct: 374 EFLTKFY 380


>sp|SUCC_HALLT|SUCCINATE--COA ligase [ADP-forming] subunit beta|Halorubrum lacusprofundi (strain

Query: 2 DFLSKFYVG 10
DF+ + YVG
Sbjct: 95 DFVDELYVG 103


>sp|RL15E_THEAC|LARGE ribosomal subunit protein eL15|Thermoplasma acidophilum (strain

Query: 2 DFLSKFYVGHD 12
+ L+ +YVG D
Sbjct: 115 EVLNSYYVGED 125


>sp|RL15E_STAMF|LARGE ribosomal subunit protein eL15|Staphylothermus marinus (strain ATCC

Query: 2 DFLSKFYVGHD 12
+ L+ +YVG D
Sbjct: 114 EVLNSYYVGED 124


>sp|RL15E_PICTO|LARGE ribosomal subunit protein eL15|Picrophilus torridus (strain ATCC

Query: 2 DFLSKFYVGHD 12
+ L+ +YVG D
Sbjct: 113 EVLNSYYVGED 123


>sp|Y903_METJA|UNCHARACTERIZED protein MJ0903|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 DFLSKFYVGHDP 13
D L ++YV DP
Sbjct: 309 DVLPRYYVIDDP 320


>sp|RL15E_THEVO|LARGE ribosomal subunit protein eL15|Thermoplasma volcanium (strain ATCC

Query: 2 DFLSKFYVGHD 12
+ L+ +YVG D
Sbjct: 115 EVLNSYYVGED 125


>sp|SQRD_ACIAM|SULFIDE-QUINONE reductase|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 7 FYVGHDP 13
FY GH+P
Sbjct: 156 FYQGHNP 162


>sp|G1PDH_SULTO|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 DFLSKFYVGHD 12
D K Y+G+D
Sbjct: 9 DLPKKVYIGYD 19


>sp|RS19_PYRNV|SMALL ribosomal subunit protein uS19|Pyrobaculum neutrophilum (strain DSM

Query: 3 FLSKFYVGH 11
F+S +++GH
Sbjct: 119 FISPWHIGH 127


>sp|RS19_PYRIL|SMALL ribosomal subunit protein uS19|Pyrobaculum islandicum (strain DSM

Query: 3 FLSKFYVGH 11
F+S +++GH
Sbjct: 121 FISPWHIGH 129


>sp|RS19_PYRCJ|SMALL ribosomal subunit protein uS19|Pyrobaculum calidifontis (strain DSM

Query: 3 FLSKFYVGH 11
F+S +++GH
Sbjct: 119 FISPWHIGH 127


>sp|RS19_PYRAE|SMALL ribosomal subunit protein uS19|Pyrobaculum aerophilum (strain ATCC

Query: 3 FLSKFYVGH 11
F+S +++GH
Sbjct: 119 FISPWHIGH 127


>sp|METK_THEAC|S-ADENOSYLMETHIONINE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 LSKFYVGH 11
LSK+Y+ H
Sbjct: 46 LSKYYIEH 53


>sp|ASSY_HYPBU|ARGININOSUCCINATE synthase|Hyperthermus butylicus (strain DSM 5456

Query: 2 DFLSKFYVGHD 12
D + K+Y+G D
Sbjct: 125 DTMLKYYLGDD 135


>sp|Y138_META3|PROTEIN Maeo_0138|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 DFLSKFYVGHD 12
D+L K VG D
Sbjct: 118 DYLEKIKVGRD 128


>sp|RL15E_AERPE|LARGE ribosomal subunit protein eL15|Aeropyrum pernix (strain ATCC 700893

Query: 4 LSKFYVGHD 12
L+ +YVG D
Sbjct: 116 LNSYYVGED 124


>sp|ENO_SACI1|ENOLASE islandicus (strain Y.N.15.51 /

Query: 3 FLSKFYVGHDP 13
+ K Y+G DP
Sbjct: 231 YQGKIYMGMDP 241






THE END