GRN_HUMAN Blast OutputR
Archaea
1|SequenceR|10|1|LAVWSVLTWM

>sp|CMR2_SACS2|CRISPR system CMR subunit Cmr2|Saccharolobus solfataricus (strain ATCC

Query: 3 VWSVLTW 9
+W V+TW
Sbjct: 236 LWYVITW 242


>sp|Y978_PYRFU|UPF0252 protein PF0978|Pyrococcus furiosus (strain ATCC 43587

Query: 3 VWSVLTW 9
+W++L W
Sbjct: 71 IWNILKW 77


>sp|CYAS_METTP|CYSTEATE synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 AVWSVLTWM 10
+WS + W+
Sbjct: 45 GIWSFIDWL 53


>sp|Y672_PYRHO|UPF0252 protein PH0672|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 VWSVLTW 9
+W++L W
Sbjct: 66 IWNILEW 72


>sp|Y405_HALVD|PROBABLE cell surface fusion protein|Haloferax volcanii (strain ATCC 29605

Query: 1 LAVWSVLTWM 10
+A+W TW+
Sbjct: 214 VALWDAGTWL 223


>sp|SODF_METTM|SUPEROXIDE dismutase [Fe]|Methanothermobacter marburgensis (strain ATCC

Query: 2 AVWSVLTW 9
A W+++ W
Sbjct: 184 AFWNIVNW 191


>sp|SODF_METTH|SUPEROXIDE dismutase [Fe]|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 AVWSVLTW 9
A W+++ W
Sbjct: 187 AFWNIVNW 194




2|SequenceR|15|6|VLGATLAVWS

***** No hits found ******


3|SequenceR|20|11|CRTGAVLGAT

>sp|GLCDH_METS5|GLUCOSE 1-dehydrogenase|Metallosphaera sedula (strain ATCC 51363

Query: 1 CRTGAVLGA 9
CRT VLG+
Sbjct: 179 CRTAVVLGS 187


>sp|DADD_METS3|5'-DEOXYADENOSINE deaminase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 CRTGAVLGA 9
C GA+LGA
Sbjct: 101 CYIGALLGA 109


>sp|RIBA_THEVO|GTP cyclohydrolase-2|Thermoplasma volcanium (strain ATCC 51530

Query: 1 CRTGAVLGA 9
C TG VLG+
Sbjct: 52 CLTGDVLGS 60


>sp|RIBA_PICTO|GTP cyclohydrolase-2|Picrophilus torridus (strain ATCC 700027

Query: 1 CRTGAVLGA 9
C TG VLG+
Sbjct: 52 CLTGDVLGS 60


>sp|RIBL_METAC|FAD synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 CRTGAVLGA 9
C TGA++ A
Sbjct: 137 CSTGAIIKA 145


>sp|ARLY_METHJ|ARGININOSUCCINATE lyase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 RTGAVLGA 9
RTG +LG+
Sbjct: 297 RTGTILGS 304


>sp|ACDA_METJA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanocaldococcus

Query: 2 RTGAVLGAT 10
+TGAVL AT
Sbjct: 329 KTGAVLIAT 337


>sp|COFG_HALMA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 CRTGAVLGAT 10
CR GA G T
Sbjct: 78 CRRGADAGCT 87


>sp|MTRA2_METTM|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A 2|Methanothermobacter marburgensis

Query: 3 TGAVLGAT 10
TG ++GAT
Sbjct: 106 TGRIIGAT 113


>sp|MTRA2_METTH|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A 2|Methanothermobacter

Query: 3 TGAVLGAT 10
TG ++GAT
Sbjct: 105 TGRIIGAT 112




4|SequenceR|25|16|FQGDPCRTGA

>sp|IF5A_THEON|TRANSLATION initiation factor 5A|Thermococcus onnurineus (strain NA1)

Query: 3 GDPCRTG 9
G+PCR G
Sbjct: 22 GEPCRIG 28


>sp|CBIE_METJA|PROBABLE cobalt-precorrin-7 C(5)-methyltransferase|Methanocaldococcus

Query: 3 GDPCRTG 9
GDPC +G
Sbjct: 77 GDPCFSG 83


>sp|AROD_METHJ|3-DEHYDROQUINATE dehydratase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 FQGDPCRTG 9
F+G P R+G
Sbjct: 230 FEGRPVRSG 238


>sp|HIS4_PYRAE|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Pyrobaculum aerophilum (strain

Query: 1 FQGDPCRTGA 10
FQGDP A
Sbjct: 26 FQGDPLELAA 35


>sp|GSA_METMA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 FQGDPCRTGA 10
F G PC A
Sbjct: 301 FSGSPCSVAA 310


>sp|GSA_METAC|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 FQGDPCRTGA 10
F G PC A
Sbjct: 301 FSGSPCSVAA 310


>sp|RS3_PICTO|SMALL ribosomal subunit protein uS3|Picrophilus torridus (strain ATCC

Query: 1 FQGDPCRTG 9
+ G+P R+G
Sbjct: 152 YSGEPARSG 160


>sp|GSA_METBF|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina barkeri (strain Fusaro /

Query: 1 FQGDPCRTGA 10
F G PC A
Sbjct: 301 FSGSPCSIAA 310


>sp|Y1477_PYRHO|UPF0179 protein PH1477|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 GDPCRT 8
G+PC+T
Sbjct: 23 GEPCKT 28


>sp|Y636_PYRAB|UPF0179 protein PYRAB06360|Pyrococcus abyssi (strain GE5 /

Query: 3 GDPCRT 8
G+PC+T
Sbjct: 23 GEPCKT 28


>sp|Y1135_METHJ|UPF0179 protein Mhun_1135|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 QGDPCRTG 9
+ PCRTG
Sbjct: 130 EAAPCRTG 137


>sp|GSA_NATPD|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 QGDPCRTG 9
QG+ CR G
Sbjct: 366 QGEACRNG 373




5|SequenceR|30|21|CAVPCFQGDP

>sp|PRIL_METTH|DNA primase large subunit PriL|Methanothermobacter thermautotrophicus

Query: 1 CAVPCFQGDP 10
C P F+ DP
Sbjct: 349 CEPPLFEDDP 358


>sp|DACZ_HALVD|DIADENYLATE cyclase|Haloferax volcanii (strain ATCC 29605

Query: 1 CAVPCFQGDP 10
C V F GDP
Sbjct: 87 CNVGTFGGDP 96


>sp|ACDG_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit gamma|Archaeoglobus fulgidus

Query: 2 AVPCFQGDP 10
AV C GDP
Sbjct: 142 AVRCTSGDP 150


>sp|CCA_METKA|CCA-ADDING enzyme|Methanopyrus kandleri (strain AV19 /

Query: 3 VPCFQGDP 10
VPC+ +P
Sbjct: 126 VPCYDTEP 133


>sp|ACDA2_PYRFU|ACETATE--COA ligase [ADP-forming] II subunit|Pyrococcus furiosus (strain ATCC

Query: 1 CAVPCFQG 8
C VP F G
Sbjct: 376 CVVPTFAG 383


>sp|COMD_METJA|SULFOPYRUVATE decarboxylase subunit alpha|Methanocaldococcus jannaschii (strain

Query: 1 CAVPC 5
C+VPC
Sbjct: 20 CSVPC 24


>sp|PGP_PYRAE|PHOSPHOGLYCOLATE phosphatase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 AVPCFQ 7
VPCFQ
Sbjct: 163 GVPCFQ 168


>sp|MCH_METB6|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanoregula boonei (strain DSM 21154

Query: 1 CAVPCFQGD 9
CAV C + D
Sbjct: 134 CAVICLESD 142


>sp|Y453_METLZ|UPF0280 protein Mlab_0453|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 AVPCFQGDP 10
+V CF DP
Sbjct: 164 SVTCFSHDP 172




6|SequenceR|35|26|GPDLCCAVPC

>sp|GSA_HALLT|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 PDLCCAVPC 10
PD CCA C
Sbjct: 365 PDACCAGGC 373


>sp|Y200_METJA|UNCHARACTERIZED hydrogenase expression/formation protein

Query: 4 LCCAVPC 10
+C A+PC
Sbjct: 1 MCLAIPC 7


>sp|CPGS_THEON|CYCLIC 2,3-diphosphoglycerate synthetase|Thermococcus onnurineus (strain

Query: 3 DLCCAV 8
D+CCAV
Sbjct: 24 DVCCAV 29


>sp|CPGS_THEKO|CYCLIC 2,3-diphosphoglycerate synthetase|Thermococcus kodakarensis

Query: 3 DLCCAV 8
D+CCAV
Sbjct: 24 DVCCAV 29


>sp|Y763_ARCFU|UNCHARACTERIZED protein AF_0763|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 DLCCAVPC 10
D C A+PC
Sbjct: 166 DNCTAIPC 173


>sp|LYSJ_PYRAE|PUTATIVE [LysW]-aminoadipate semialdehyde/glutamate semialdehyde

Query: 1 GPDLCCAV 8
G D CC V
Sbjct: 167 GEDTCCVV 174


>sp|TRPE_AERPE|ANTHRANILATE synthase component 1|Aeropyrum pernix (strain ATCC 700893

Query: 3 DLCCAVPC 10
D C A+PC
Sbjct: 83 DKCRALPC 90




7|SequenceR|40|31|SYSAGGPDLC

>sp|NADK_PICTO|NAD kinase|Picrophilus torridus (strain ATCC 700027

Query: 1 SYSAGGPDL 9
S+SAGGP L
Sbjct: 173 SFSAGGPIL 181


>sp|AGLS_HALVD|DOLICHOL phosphate-mannose mannosyltransferase|Haloferax volcanii (strain

Query: 1 SYSAGGPD 8
SYS GPD
Sbjct: 365 SYSGDGPD 372


>sp|DADD_METMA|5'-DEOXYADENOSINE deaminase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 YSAGGPDL 9
YSAGG D+
Sbjct: 384 YSAGGSDV 391


>sp|PURL_SACI7|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 5 GGPDLC 10
G PDLC
Sbjct: 434 GNPDLC 439


>sp|PURL_SACI6|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain M.16.4 /

Query: 5 GGPDLC 10
G PDLC
Sbjct: 434 GNPDLC 439


>sp|PURL_SACI4|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain M.14.25 /

Query: 5 GGPDLC 10
G PDLC
Sbjct: 434 GNPDLC 439


>sp|PURL_SACI3|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain M.16.27)

Query: 5 GGPDLC 10
G PDLC
Sbjct: 434 GNPDLC 439


>sp|PURL_SACI2|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain L.S.2.15 /

Query: 5 GGPDLC 10
G PDLC
Sbjct: 434 GNPDLC 439


>sp|PURL_SACI1|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 5 GGPDLC 10
G PDLC
Sbjct: 434 GNPDLC 439


>sp|NADK_ARCFU|NAD kinase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SYSAGGP 7
++SAGGP
Sbjct: 159 AFSAGGP 165


>sp|MTMC2_METBA|MONOMETHYLAMINE corrinoid protein 2|Methanosarcina barkeri

Query: 4 AGGPDLC 10
AG P+LC
Sbjct: 20 AGTPELC 26


>sp|MTMC1_METBA|MONOMETHYLAMINE corrinoid protein 1|Methanosarcina barkeri

Query: 4 AGGPDLC 10
AG P+LC
Sbjct: 20 AGTPELC 26


>sp|MTD_METMJ|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanoculleus

Query: 4 AGGPDLC 10
A GPD C
Sbjct: 57 AWGPDFC 63


>sp|MTD_METHJ|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanospirillum

Query: 4 AGGPDLC 10
A GPD C
Sbjct: 57 AWGPDFC 63


>sp|SYW_PYRAR|TRYPTOPHAN--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 4 AGGPDLC 10
G PD+C
Sbjct: 299 GGNPDIC 305


>sp|PHNC_HALSA|PHOSPHONATES import ATP-binding protein PhnC|Halobacterium salinarum (strain

Query: 3 SAGGPD 8
+AGGPD
Sbjct: 265 AAGGPD 270




8|SequenceR|45|36|LPRCCSYSAG

>sp|SYL_THEAC|LEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 RCCSYSA 9
RCC++S
Sbjct: 7 RCCTHSG 13


>sp|SPSS_METMP|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain DSM 14266

Query: 5 CSYSAG 10
C+YSAG
Sbjct: 193 CAYSAG 198


>sp|SPSS_METM7|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain C7 /

Query: 5 CSYSAG 10
C+YSAG
Sbjct: 193 CAYSAG 198


>sp|SPSS_METM6|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain C6 /

Query: 5 CSYSAG 10
C+YSAG
Sbjct: 193 CAYSAG 198


>sp|SPSS_METM5|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain C5 /

Query: 5 CSYSAG 10
C+YSAG
Sbjct: 193 CAYSAG 198


>sp|ADEC_METMJ|ADENINE deaminase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 PRCC 5
PRCC
Sbjct: 221 PRCC 224


>sp|PUR1_PYRAB|AMIDOPHOSPHORIBOSYLTRANSFERASE abyssi (strain GE5 /

Query: 3 RCCSY 7
RCC Y
Sbjct: 95 RCCGY 99


>sp|VORB_PYRFU|KETOISOVALERATE oxidoreductase subunit VorB|Pyrococcus furiosus (strain ATCC

Query: 1 LPRCCS 6
+P CCS
Sbjct: 50 IPACCS 55


>sp|VORB_PYRAB|KETOISOVALERATE oxidoreductase subunit VorB|Pyrococcus abyssi (strain GE5 /

Query: 1 LPRCCS 6
+P CCS
Sbjct: 50 IPACCS 55


>sp|VORB_PYRHO|KETOISOVALERATE oxidoreductase subunit VorB|Pyrococcus horikoshii (strain ATCC

Query: 1 LPRCCS 6
+P CCS
Sbjct: 50 IPACCS 55




9|SequenceR|50|41|PWKDLLPRCC

>sp|EPPA_METJA|PREPILIN peptidase EppA|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WKDLLPRCC 10
WKD++P C
Sbjct: 123 WKDIIPSAC 131


>sp|NADM_PYRHO|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PWKDLLPR 8
PW+DL+P+
Sbjct: 141 PWEDLVPK 148


>sp|NADM_PYRFU|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PWKDLLPR 8
PW+DL+P+
Sbjct: 143 PWEDLVPK 150


>sp|NADM_PYRAB|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 1 PWKDLLPR 8
PW+DL+P+
Sbjct: 141 PWEDLVPK 148


>sp|NADM_THEKO|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PWKDLLPR 8
PW++L+PR
Sbjct: 143 PWEELVPR 150


>sp|NADM_THEON|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Thermococcus onnurineus (strain NA1)

Query: 1 PWKDLLPR 8
PW++L+P+
Sbjct: 142 PWEELVPK 149


>sp|SYL_METTH|LEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 WKDLLPRC 9
WKDL RC
Sbjct: 455 WKDLAHRC 462


>sp|DGGGP_THEPD|DIGERANYLGERANYLGLYCERYL phosphate synthase|Thermofilum pendens (strain DSM 2475

Query: 1 PWKDLLP 7
PW+ LLP
Sbjct: 161 PWRSLLP 167


>sp|MDH_PICTO|MALATE dehydrogenase|Picrophilus torridus (strain ATCC 700027

Query: 1 PWKDLLPR 8
P +DLLPR
Sbjct: 198 PIEDLLPR 205


>sp|EPPA_METMP|PREPILIN peptidase EppA|Methanococcus maripaludis (strain DSM 14266

Query: 2 WKDLLP 7
WKD++P
Sbjct: 125 WKDIIP 130


>sp|RGYR1_AERPE|REVERSE gyrase 1|Aeropyrum pernix (strain ATCC 700893

Query: 2 WKDLLPRCC 10
W D PR C
Sbjct: 867 WCDFWPRYC 875


>sp|NADM_METB6|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Methanoregula boonei (strain DSM 21154

Query: 1 PWKDLLP 7
PW++L+P
Sbjct: 139 PWENLVP 145


>sp|SYL_METBU|LEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 WKDLLPRC 9
WKD + RC
Sbjct: 463 WKDKVYRC 470


>sp|KATG_ARCFU|CATALASE-PEROXIDASE fulgidus (strain ATCC 49558

Query: 2 WKDLLPR 8
W+D LPR
Sbjct: 416 WQDPLPR 422


>sp|PURL_THEGJ|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermococcus gammatolerans (strain DSM

Query: 1 PWKDLLP 7
PW LLP
Sbjct: 40 PWLKLLP 46


>sp|NADM_METMJ|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 PWKDLLP 7
PW+ L+P
Sbjct: 139 PWEHLVP 145


>sp|FAU1_STAMF|PROBABLE ribonuclease FAU-1|Staphylothermus marinus (strain ATCC 43588

Query: 3 KDLLPRC 9
K +LPRC
Sbjct: 115 KGVLPRC 121


>sp|SYH_THEKO|HISTIDINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 WKDLLP 7
WK LLP
Sbjct: 329 WKGLLP 334


>sp|SYH_PYRAB|HISTIDINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 WKDLLP 7
WK LLP
Sbjct: 327 WKGLLP 332


>sp|SYH_PYRHO|HISTIDINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 WKDLLPR 8
WK L+P+
Sbjct: 327 WKGLIPK 333


>sp|NADM_PYRNV|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 WKDLLPR 8
W++L+PR
Sbjct: 144 WEELVPR 150


>sp|THYX_PYRFU|FLAVIN-DEPENDENT thymidylate synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 WKDLLPRC 9
W L PRC
Sbjct: 205 WAKLGPRC 212


>sp|THYX_PYRAB|FLAVIN-DEPENDENT thymidylate synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 WKDLLPRC 9
W L PRC
Sbjct: 205 WAKLGPRC 212


>sp|THYX_PYRHO|FLAVIN-DEPENDENT thymidylate synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 WKDLLPRC 9
W L PRC
Sbjct: 205 WAKLGPRC 212




10|SequenceR|55|46|RSLTTPWKDL

>sp|RPO3_PYRCJ|DNA-DIRECTED RNA polymerase subunit Rpo3|Pyrobaculum calidifontis (strain DSM

Query: 3 LTTPWKDL 10
LTTP KDL
Sbjct: 68 LTTPLKDL 75


>sp|UVRA_METTH|UVRABC system protein A|Methanothermobacter thermautotrophicus (strain

Query: 2 SLTTPWKDL 10
SL TP++DL
Sbjct: 343 SLDTPFRDL 351


>sp|CARB_PYRFU|CARBAMOYL phosphate synthase large chain|Pyrococcus furiosus (strain ATCC

Query: 2 SLTTPWKDL 10
++ TPW+ L
Sbjct: 773 TMVTPWRTL 781


>sp|SYI_METBU|ISOLEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 SLTTPWKDL 10
S + PW+DL
Sbjct: 625 SASAPWEDL 633


>sp|Y832_METJA|UNCHARACTERIZED protein MJ0832|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RSLTTPWKDL 10
+ T WKDL
Sbjct: 1229 KEYKTKWKDL 1238


>sp|SYM_METBF|METHIONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 SLTTPWKDL 10
S+ T WK+L
Sbjct: 494 SMETAWKEL 502


>sp|GGGPS_HALSA|GERANYLGERANYLGLYCERYL phosphate synthase|Halobacterium salinarum (strain ATCC 700922

Query: 3 LTTPWKD 9
+T PW D
Sbjct: 1 MTAPWAD 7


>sp|GGGPS_HALS3|GERANYLGERANYLGLYCERYL phosphate synthase|Halobacterium salinarum (strain ATCC 29341

Query: 3 LTTPWKD 9
+T PW D
Sbjct: 1 MTAPWAD 7


>sp|ASSY_SULAC|ARGININOSUCCINATE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 RSLTTPWKDL 10
RSL W DL
Sbjct: 294 RSLDGQWSDL 303


>sp|SYI_METAC|ISOLEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 SLTTPWKDL 10
S + PW+DL
Sbjct: 625 SSSAPWEDL 633


>sp|SYI_METAR|ISOLEUCINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 SLTTPWKDL 10
S PW+DL
Sbjct: 673 SQNAPWEDL 681


>sp|SYI_ARCFU|ISOLEUCINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 TTPWKDL 10
+ PW+DL
Sbjct: 616 SAPWEDL 622




11|SequenceR|60|51|PGGLHRSLTT

>sp|Y554_METJA|UNCHARACTERIZED protein MJ0554|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GGLHRSLT 9
GG+H+ LT
Sbjct: 64 GGVHKELT 71


>sp|Y1489_METJA|MCM-LIKE protein MJ1489|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PGGLHRSLTT 10
PG L+ S+TT
Sbjct: 346 PGNLYGSVTT 355


>sp|GGR2_METKA|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 2|Methanopyrus kandleri (strain AV19 /

Query: 2 GGLHRSL 8
GGLH SL
Sbjct: 289 GGLHTSL 295


>sp|RL2_METS5|LARGE ribosomal subunit protein uL2|Metallosphaera sedula (strain ATCC

Query: 2 GGLHRSLT 9
GGLH+S++
Sbjct: 202 GGLHQSVS 209




12|SequenceR|65|56|ADVQCPGGLH

>sp|ACDG_METKA|ACETYL-COA decarbonylase/synthase complex subunit gamma|Methanopyrus kandleri

Query: 1 ADVQCPGGLH 10
AD CP GLH
Sbjct: 199 ADGDCPLGLH 208


>sp|ELP3_METIM|TRNA uridine(34) acetyltransferase|Methanocaldococcus infernus (strain

Query: 5 CPGGL 9
CPGGL
Sbjct: 98 CPGGL 102


>sp|Y1272_IGNH4|UPF0179 protein Igni_1272|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 DVQCPGGL 9
+VQCP GL
Sbjct: 124 EVQCPLGL 131


>sp|ENO_THEVO|ENOLASE volcanium (strain ATCC 51530

Query: 1 ADVQCPGGL 9
ADV PGG
Sbjct: 24 ADVYIPGGF 32


>sp|URED_NATPD|UREASE accessory protein UreD|Natronomonas pharaonis (strain ATCC 35678

Query: 1 ADVQCPGGL 9
ADV PGGL
Sbjct: 161 ADVFVPGGL 169


>sp|SYA_THEKO|ALANINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 715 DVQACGGTH 723


>sp|SYA_PYRNV|ALANINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 698 DVQACGGTH 706


>sp|SYA_PYRHO|ALANINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 713 DVQACGGTH 721


>sp|SYA_PYRFU|ALANINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 713 DVQACGGTH 721


>sp|SYA_PYRCJ|ALANINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 703 DVQACGGTH 711


>sp|SYA_PYRAR|ALANINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 698 DVQACGGTH 706


>sp|SYA_PYRAE|ALANINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 698 DVQACGGTH 706


>sp|SYA_PYRAB|ALANINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 713 DVQACGGTH 721


>sp|SYA_METJA|ALANINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 695 DVQACGGTH 703


>sp|SYA_ARCFU|ALANINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 699 DVQACGGTH 707


>sp|VORA_METTM|KETOISOVALERATE oxidoreductase subunit VorA|Methanothermobacter marburgensis

Query: 3 VQCPGG 8
V CPGG
Sbjct: 154 VTCPGG 159


>sp|SYA_METAR|ALANINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 DVQCPGGLH 10
DV+ GG+H
Sbjct: 696 DVEACGGIH 704


>sp|HPS_METBF|3-HEXULOSE-6-PHOSPHATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 2 DVQCPGGL 9
DV C GGL
Sbjct: 285 DVACWGGL 292


>sp|PUS10_IGNAA|TRNA pseudouridine synthase Pus10|Ignisphaera aggregans (strain DSM

Query: 1 ADVQCPGGLH 10
A ++C GGL+
Sbjct: 383 ALIKCEGGLY 392


>sp|SYA_HALMA|ALANINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 2 DVQCPGGLH 10
DVQ GG H
Sbjct: 717 DVQACGGTH 725


>sp|SYA_PYRIL|ALANINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 DVQCPGGLH 10
D+Q GG H
Sbjct: 698 DIQACGGTH 706


>sp|GGR2_METTH|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 2|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 VQCPGGL 9
VQC GG+
Sbjct: 41 VQCAGGV 47


>sp|AATC_METBU|A-TYPE ATP synthase subunit C|Methanococcoides burtonii (strain DSM 6242

Query: 1 ADVQCPGGLH 10
AD+ GGLH
Sbjct: 242 ADLILEGGLH 251


>sp|PUS10_METST|TRNA pseudouridine synthase Pus10|Methanosphaera stadtmanae (strain ATCC

Query: 3 VQCPGGLH 10
++C GGL+
Sbjct: 362 IKCQGGLY 369


>sp|CYAS_METTP|CYSTEATE synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 5 CPGGLH 10
CP G+H
Sbjct: 289 CPEGMH 294


>sp|ALAXM_SACS2|ALANYL-TRNA editing protein AlaX-M|Saccharolobus solfataricus (strain ATCC

Query: 2 DVQCPGGLH 10
D+Q GG H
Sbjct: 197 DIQADGGPH 205


>sp|PUS10_PYRAR|TRNA pseudouridine synthase Pus10|Pyrobaculum arsenaticum (strain DSM

Query: 3 VQCPGGLH 10
++C GGL+
Sbjct: 369 IRCQGGLY 376


>sp|SYA_HALWD|ALANINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 DVQCPGGLH 10
D+Q GG H
Sbjct: 713 DIQACGGTH 721


>sp|ILVD_METJA|DIHYDROXY-ACID dehydratase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 DVQCPGG 8
D+ CPG
Sbjct: 182 DIACPGA 188




13|SequenceR|70|61|GASCHADVQC

>sp|RNH2_METLZ|RIBONUCLEASE HII|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 ASCHADV 8
ASCHADV
Sbjct: 82 ASCHADV 88


>sp|KAD6_PYRAE|PUTATIVE adenylate kinase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GASCHADV 8
G CH+DV
Sbjct: 162 GGRCHSDV 169


>sp|Y090_METJA|UNCHARACTERIZED protease MJ0090|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GASCHADVQC 10
G HA VQC
Sbjct: 109 GLRVHASVQC 118


>sp|MCH_METPE|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 GASCHADV 8
A CH DV
Sbjct: 154 AAECHVDV 161


>sp|MFNA_NATPD|PROBABLE L-aspartate decarboxylase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 GASCHAD 7
GA CH D
Sbjct: 168 GALCHVD 174


>sp|DMSR_HALSA|DIMETHYL sulfoxide reductase transcriptional activator|Halobacterium

Query: 1 GASCHADV 8
G CHADV
Sbjct: 50 GDDCHADV 57


>sp|PURL_HALMA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Haloarcula marismortui (strain ATCC 43049

Query: 1 GASCHADVQC 10
GA+ HA V C
Sbjct: 472 GATPHAAVDC 481


>sp|ACDA_METJA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanocaldococcus

Query: 1 GASCHA 6
GA+CHA
Sbjct: 113 GAACHA 118


>sp|Y1679_METMP|UPF0179 protein MMP1679|Methanococcus maripaludis (strain DSM 14266

Query: 5 HADVQC 10
H+DVQC
Sbjct: 92 HSDVQC 97




14|SequenceR|75|66|FICSHGASCH

>sp|ARGJ_METKA|GLUTAMATE N-acetyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 2 ICSHGAS 8
+C HGAS
Sbjct: 265 VCVHGAS 271


>sp|PCKG_SULTO|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 FICSHG 6
F CSHG
Sbjct: 412 FSCSHG 417


>sp|MALA_HALJT|ALPHA-AMYLASE MalA|Haloarcula japonica (strain ATCC 49778

Query: 1 FICSHGASCH 10
+C+H A H
Sbjct: 336 LVCNHSARTH 345


>sp|Y047_METJA|PROBABLE RNase MJ4|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 ICSHGASCH 10
+C + SCH
Sbjct: 367 VCMYNFSCH 375




15|SequenceR|80|71|TGSVTFICSH

>sp|RL24E_META3|LARGE ribosomal subunit protein eL24|Methanococcus aeolicus (strain

Query: 2 GSVTFICS 9
GSV FICS
Sbjct: 26 GSVMFICS 33


>sp|PTFB_HALVD|PTS system fructose-specific EIIB component|Haloferax volcanii (strain

Query: 1 TGSVTF 6
TGSVTF
Sbjct: 105 TGSVTF 110


>sp|TFE_NANEQ|TRANSCRIPTION factor E|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 TGSVTFIC 8
TG + FIC
Sbjct: 102 TGELLFIC 109


>sp|Y1629_ARCFU|UNCHARACTERIZED protein AF_1629|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 TGSVTFIC 8
TG++TF C
Sbjct: 100 TGTITFEC 107


>sp|SYI_THEAC|ISOLEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 TGSVTFICSH 10
+GS T+ SH
Sbjct: 521 SGSATYAASH 530


>sp|RL24E_METS3|LARGE ribosomal subunit protein eL24|Methanobrevibacter smithii (strain

Query: 2 GSVTFICS 9
GS+ F CS
Sbjct: 24 GSIYFFCS 31




16|SequenceR|85|76|PCCSSTGSVT

>sp|SYT_METMP|THREONINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 3 CSSTGSV 9
CS TGSV
Sbjct: 468 CSPTGSV 474


>sp|SYT_METM7|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 3 CSSTGSV 9
CS TGSV
Sbjct: 468 CSPTGSV 474


>sp|SYT_METM6|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 3 CSSTGSV 9
CS TGSV
Sbjct: 468 CSPTGSV 474


>sp|SYT_METM5|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 3 CSSTGSV 9
CS TGSV
Sbjct: 468 CSPTGSV 474


>sp|SYT_METB6|THREONINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 3 CSSTGSV 9
CS TGSV
Sbjct: 464 CSPTGSV 470


>sp|SYT_METHJ|THREONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 CSSTGSV 9
CS TGSV
Sbjct: 460 CSPTGSV 466


>sp|AATA_METBF|A-TYPE ATP synthase subunit A|Methanosarcina barkeri (strain Fusaro /

Query: 3 CSSTGSVT 10
C TGS+T
Sbjct: 372 CGETGSIT 379


>sp|AATA_METBA|A-TYPE ATP synthase subunit A|Methanosarcina barkeri

Query: 3 CSSTGSVT 10
C TGS+T
Sbjct: 372 CGETGSIT 379


>sp|DNAJ_METTE|CHAPERONE protein DnaJ|Methanosarcina thermophila

Query: 1 PCCSSTGSV 9
P CS TG V
Sbjct: 201 PVCSGTGRV 209


>sp|FAU1_THEPD|PROBABLE ribonuclease FAU-1|Thermofilum pendens (strain DSM 2475

Query: 2 CCSSTGSV 9
C SSTG++
Sbjct: 292 CLSSTGAI 299


>sp|RPO2_THEAC|DNA-DIRECTED RNA polymerase subunit Rpo2|Thermoplasma acidophilum (strain ATCC

Query: 1 PCCSSTGSV 9
P C +TG++
Sbjct: 1156 PVCGNTGNI 1164


>sp|ADPRH_METOA|PROTEIN-ADP-RIBOSE hydrolase|Methanobrevibacter oralis

Query: 2 CCSSTG 7
CC STG
Sbjct: 204 CCISTG 209


>sp|PPSA_METTH|PROBABLE phosphoenolpyruvate synthase|Methanothermobacter thermautotrophicus

Query: 1 PCCSSTGSVT 10
PC TG+ T
Sbjct: 435 PCVVGTGNAT 444


>sp|SYT_METVS|THREONINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 3 CSSTGSV 9
CS TGS+
Sbjct: 468 CSPTGSI 474


>sp|SYT_METTH|THREONINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 CSSTGSV 9
CS TGS+
Sbjct: 459 CSPTGSI 465


>sp|SYT_METST|THREONINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 CSSTGSV 9
CS TGS+
Sbjct: 467 CSPTGSI 473


>sp|SYT_METS3|THREONINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 CSSTGSV 9
CS TGS+
Sbjct: 460 CSPTGSI 466


>sp|SYT_METPE|THREONINE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 3 CSSTGSV 9
CS TGS+
Sbjct: 459 CSPTGSI 465


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 CSSTGSV 9
CS TGS+
Sbjct: 461 CSPTGSI 467


>sp|SYT_METJA|THREONINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 CSSTGSV 9
CS TGS+
Sbjct: 466 CSPTGSI 472


>sp|SYT_META3|THREONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 CSSTGSV 9
CS TGS+
Sbjct: 476 CSPTGSI 482


>sp|DNAJ_THEAC|CHAPERONE protein DnaJ|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PCCSSTGSV 9
P C+ TG+V
Sbjct: 209 PRCNGTGTV 217


>sp|RL37A_AERPE|LARGE ribosomal subunit protein eL43|Aeropyrum pernix (strain ATCC

Query: 1 PCCSSTGSV 9
P C STG+V
Sbjct: 39 PFCGSTGTV 47


>sp|DNAJ_METAC|CHAPERONE protein DnaJ|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PCCSSTGSV 9
P C TG V
Sbjct: 162 PTCGGTGQV 170




17|SequenceR|90|81|VAEPFPCCSS

>sp|SYK_HALSA|LYSINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 VAEPFPCCSS 10
+ +PF CC S
Sbjct: 120 IPDPFGCCDS 129


>sp|SYK_NATPD|LYSINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 VAEPFPCCSS 10
+ +PF CC S
Sbjct: 118 IPDPFGCCDS 127


>sp|SYK_HALMA|LYSINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 VAEPFPCCSS 10
+ +PF CC S
Sbjct: 119 IPDPFGCCDS 128


>sp|TRUD_METBF|PROBABLE tRNA pseudouridine synthase D|Methanosarcina barkeri (strain Fusaro

Query: 1 VAEPFP 6
+AEPFP
Sbjct: 202 IAEPFP 207


>sp|KVAP_AERPE|VOLTAGE-GATED potassium channel|Aeropyrum pernix (strain ATCC 700893

Query: 1 VAEPFPCCS 9
V EP P CS
Sbjct: 253 VGEPEPSCS 261


>sp|AGLI_HALVD|GLYCOSYLTRANSFERASE AglI|Haloferax volcanii (strain ATCC 29605

Query: 4 PFPCCS 9
PFPC S
Sbjct: 5 PFPCVS 10




18|SequenceR|95|86|GDGCAVAEPF

>sp|IDH_CALNO|ISOCITRATE dehydrogenase [NADP]|Caldococcus noboribetus

Query: 1 GDGCAVAEP 9
GDG AVAEP
Sbjct: 330 GDGIAVAEP 338


>sp|Y1098_METJA|UNCHARACTERIZED protein MJ1098|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 CAVAEPF 10
C++ EPF
Sbjct: 224 CSIVEPF 230


>sp|RFCL_METAC|REPLICATION factor C large subunit|Methanosarcina acetivorans (strain ATCC

Query: 1 GDGCAVAEP 9
GDG AEP
Sbjct: 590 GDGAKKAEP 598


>sp|ADEC_METBU|ADENINE deaminase|Methanococcoides burtonii (strain DSM 6242

Query: 3 GCAVAEPF 10
GCA+ PF
Sbjct: 539 GCALPAPF 546


>sp|PURP_PYRAE|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrobaculum aerophilum (strain ATCC

Query: 3 GCAVAEPF 10
GC +A PF
Sbjct: 266 GCKLAGPF 273


>sp|AROA_METBU|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanococcoides burtonii (strain DSM

Query: 1 GDGCA 5
GDGCA
Sbjct: 139 GDGCA 143


>sp|IDH_ARCFU|ISOCITRATE dehydrogenase [NADP]|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GDGCAVAEP 9
GDG V EP
Sbjct: 323 GDGIGVFEP 331


>sp|HIS8_HALWD|HISTIDINOL-PHOSPHATE aminotransferase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 GDGCAVAE 8
GDG AVAE
Sbjct: 306 GDGNAVAE 313




19|SequenceR|100|91|PCCHHGDGCA

>sp|Y130_ARCFU|PROBABLE deacetylase AF_0130|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 HHGDG 8
HHGDG
Sbjct: 164 HHGDG 168


>sp|PSTK_METKA|L-SERYL-TRNA(SEC) kinase|Methanopyrus kandleri (strain AV19 /

Query: 3 CHHGDG 8
C HGDG
Sbjct: 250 CLHGDG 255


>sp|FTTA_METMP|TRANSCRIPTION termination factor FttA|Methanococcus maripaludis (strain DSM 14266

Query: 3 CHHGDG 8
CH GDG
Sbjct: 337 CHVGDG 342


>sp|AROA_METBU|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanococcoides burtonii (strain DSM

Query: 6 GDGCA 10
GDGCA
Sbjct: 139 GDGCA 143


>sp|RTCB_METMP|TRNA-SPLICING ligase RtcB|Methanococcus maripaludis (strain DSM 14266

Query: 1 PCCHHGDG 8
P CH+G G
Sbjct: 64 PDCHYGYG 71


>sp|SYM_METB6|METHIONINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 PCCHH 5
P CHH
Sbjct: 99 PACHH 103


>sp|HIS3_NITMS|PHOSPHORIBOSYL-AMP cyclohydrolase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 PCCHHGD 7
P CH G+
Sbjct: 93 PACHTGE 99


>sp|DTDA_HALWD|D-AMINOACYL-TRNA deacylase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 CCHHG 6
C HHG
Sbjct: 132 CTHHG 136


>sp|DTDA_HALMA|D-AMINOACYL-TRNA deacylase|Haloarcula marismortui (strain ATCC 43049

Query: 2 CCHHG 6
C HHG
Sbjct: 137 CTHHG 141


>sp|DTDA_HALLT|D-AMINOACYL-TRNA deacylase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 CCHHG 6
C HHG
Sbjct: 154 CTHHG 158


>sp|LYSJ_AERPE|PUTATIVE [LysW]-aminoadipate semialdehyde/glutamate semialdehyde

Query: 3 CHHGDGCA 10
CH G G A
Sbjct: 37 CHAGHGAA 44


>sp|KHSE_NATPD|HOMOSERINE kinase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 CHHGDGCA 10
CH GD A
Sbjct: 254 CHRGDRTA 261


>sp|HUTU_THEAC|PROBABLE urocanate hydratase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 HHGDGCA 10
HHG G A
Sbjct: 486 HHGGGTA 492


>sp|CBIH_METTH|PROBABLE cobalt-factor III C(17)-methyltransferase|Methanothermobacter

Query: 1 PCCHHGDGCA 10
PC G CA
Sbjct: 268 PCHFEGQNCA 277


>sp|HIS3_CENSY|PHOSPHORIBOSYL-AMP cyclohydrolase|Cenarchaeum symbiosum (strain A)

Query: 1 PCCHHGD 7
P CH G+
Sbjct: 93 PACHTGE 99


>sp|DTDA_NATPD|D-AMINOACYL-TRNA deacylase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 CCHHGD---GCA 10
C HHG GC+
Sbjct: 137 CTHHGPSTVGCS 148


>sp|MVHD_METTM|F420-NON-REDUCING hydrogenase iron-sulfur subunit D|Methanothermobacter

Query: 3 CHHGD 7
CHHGD
Sbjct: 67 CHHGD 71


>sp|MVHD_METTH|F420-NON-REDUCING hydrogenase iron-sulfur subunit D|Methanothermobacter

Query: 3 CHHGD 7
CHHGD
Sbjct: 67 CHHGD 71




20|SequenceR|105|96|CHFGRPCCHH

>sp|CFBA_METBU|SIROHYDROCHLORIN cobaltochelatase|Methanococcoides burtonii (strain DSM 6242

Query: 3 FGRPCCHH 10
FG+P HH
Sbjct: 109 FGKPLGHH 116


>sp|SYL_THEAC|LEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 GRPCCHH 10
GR CC H
Sbjct: 5 GRRCCTH 11


>sp|HIS3_HALSA|PHOSPHORIBOSYL-AMP cyclohydrolase|Halobacterium salinarum (strain ATCC 700922

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 101 CHTGHESCFH 110


>sp|HIS3_HALS3|PHOSPHORIBOSYL-AMP cyclohydrolase|Halobacterium salinarum (strain ATCC 29341

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 101 CHTGHESCFH 110


>sp|HIS3_NITMS|PHOSPHORIBOSYL-AMP cyclohydrolase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 95 CHTGERVCFH 104


>sp|HIS3_NATPD|PHOSPHORIBOSYL-AMP cyclohydrolase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 91 CHTGYDTCFH 100


>sp|Y155_ARCFU|UNCHARACTERIZED protein AF_0155|Archaeoglobus fulgidus (strain ATCC 49558

Query: 6 PCCH 9
PCCH
Sbjct: 85 PCCH 88


>sp|HIS3_HALMA|PHOSPHORIBOSYL-AMP cyclohydrolase|Haloarcula marismortui (strain ATCC 43049

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 92 CHTGYESCFH 101


>sp|MES_EURX9|METALLOPTERIN-DEPENDENT ergothioneine synthase|Euryarchaeota archaeon (strain ADurb.Bin009)

Query: 1 CHFGRPCCHH 10
CH G P H
Sbjct: 1068 CHSGSPAPSH 1077


>sp|PHSG_THELN|MALTODEXTRIN phosphorylase|Thermococcus litoralis (strain ATCC 51850

Query: 2 HFGRPCCHH 10
+ G PC H+
Sbjct: 795 NLGHPCWHY 803


>sp|HIS3_CENSY|PHOSPHORIBOSYL-AMP cyclohydrolase|Cenarchaeum symbiosum (strain A)

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 95 CHTGERNCFH 104


>sp|HIS3_IGNH4|PHOSPHORIBOSYL-AMP cyclohydrolase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 104 CHEGYRSCFH 113


>sp|HIS3_METVS|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus vannielii (strain ATCC 35089

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 109 CHEGYMSCFH 118


>sp|HIS3_METVA|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus vannielii

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 109 CHEGYMSCFH 118


>sp|HIS3_METMP|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus maripaludis (strain DSM 14266

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 102 CHEGYMSCFH 111


>sp|HIS3_METM7|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus maripaludis (strain C7 /

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 102 CHEGYMSCFH 111


>sp|HIS3_METM6|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus maripaludis (strain C6 /

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 102 CHEGYMSCFH 111


>sp|HIS3_METM5|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus maripaludis (strain C5 /

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 102 CHEGYMSCFH 111


>sp|NIFE_METTH|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 4 GRPCCH 9
G PCC+
Sbjct: 46 GGPCCN 51


>sp|HIS3_METJA|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CHFGRPCCHH 10
CH G C H
Sbjct: 100 CHEGYYSCFH 109




21|SequenceR|110|101|RGDASCHFGR

>sp|ADH_SULAC|NAD-DEPENDENT alcohol dehydrogenase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 GDASCHF 8
GD SCH+
Sbjct: 95 GDGSCHY 101


>sp|EF1A_METKA|ELONGATION factor 1-alpha|Methanopyrus kandleri (strain AV19 /

Query: 1 RGDASCH 7
RGD +CH
Sbjct: 298 RGDVACH 304


>sp|Y745_METJA|UNCHARACTERIZED protein MJ0745|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RGDASCHF 8
RGD +C+F
Sbjct: 168 RGDDACYF 175


>sp|Y1520_METJA|UNCHARACTERIZED protein MJ1520|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GDASCH 7
GDA+CH
Sbjct: 266 GDAACH 271


>sp|AATI_METJA|A-TYPE ATP synthase subunit I|Methanocaldococcus jannaschii (strain ATCC

Query: 1 RGDASCHFGR 10
RGDA FG+
Sbjct: 292 RGDAYSQFGK 301


>sp|KPYK_PYRAE|PYRUVATE kinase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 RGDASCHFG 9
RGD H+G
Sbjct: 254 RGDLGLHYG 262


>sp|THIM_METMA|HYDROXYETHYLTHIAZOLE kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 DASCHFG 9
DA C+FG
Sbjct: 214 DALCYFG 220


>sp|THIM_METAC|HYDROXYETHYLTHIAZOLE kinase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 DASCHFG 9
DA C+FG
Sbjct: 214 DALCYFG 220


>sp|FTTA_CENSY|TRANSCRIPTION termination factor FttA|Cenarchaeum symbiosum (strain A)

Query: 2 GDASCHF 8
G A CHF
Sbjct: 340 GSALCHF 346


>sp|Y1109_METTH|PUTATIVE nickel insertion protein|Methanothermobacter thermautotrophicus

Query: 3 DASCHFG 9
DA+ HFG
Sbjct: 37 DAASHFG 43


>sp|DPCKG_METS3|GTP-DEPENDENT dephospho-CoA kinase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 GDASCH 7
GD +CH
Sbjct: 108 GDGNCH 113




22|SequenceR|115|106|RQFCSRGDAS

>sp|NADA_METKA|QUINOLINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 RQFCSRGDAS 10
RQ+C + DAS
Sbjct: 205 RQYCEKEDAS 214


>sp|THIOL_METTL|ACETYL-COA acetyltransferase|Methanothermococcus thermolithotrophicus

Query: 3 FCSRGDA 9
FC +GDA
Sbjct: 300 FCKKGDA 306


>sp|RIFK_HYPBU|RIBOFLAVIN kinase|Hyperthermus butylicus (strain DSM 5456

Query: 4 CSRGDA 9
C RGDA
Sbjct: 138 CKRGDA 143




23|SequenceR|120|111|SNNGSRQFCS

>sp|GATB_AERPE|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Aeropyrum pernix (strain ATCC 700893

Query: 1 SNNGSRQFC 9
SN GS+ FC
Sbjct: 19 SNAGSKLFC 27


>sp|DP2S_PYRAB|DNA polymerase II small subunit|Pyrococcus abyssi (strain GE5 /

Query: 4 GSRQFC 9
GSR+FC
Sbjct: 364 GSREFC 369




24|SequenceR|125|116|QIAGVSNNGS

>sp|PURQ_PYRAB|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Pyrococcus abyssi (strain GE5 /

Query: 2 IAGVSNNG 9
IAGVSN G
Sbjct: 180 IAGVSNEG 187


>sp|TRI_SACS2|TRICORN protease homolog|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 QIAGVSNN 8
QIAG NN
Sbjct: 594 QIAGAKNN 601


>sp|TSGDD_HALVD|GLUCOSE import ATP-binding protein TsgD13|Haloferax volcanii (strain ATCC

Query: 2 IAGVSNNG 9
IAGVS NG
Sbjct: 318 IAGVSGNG 325


>sp|ARLMC_PYRAB|23S rRNA (uracil(747)-C(5))-methyltransferase|Pyrococcus abyssi

Query: 2 IAGVSNNG 9
I GVSN+G
Sbjct: 5 IKGVSNDG 12


>sp|PYRG_SULAC|CTP synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 IAGVSNNG 9
I+GVS NG
Sbjct: 480 ISGVSENG 487


>sp|Y1109_METTH|PUTATIVE nickel insertion protein|Methanothermobacter thermautotrophicus

Query: 1 QIAGVSNN 8
Q+AGVS N
Sbjct: 8 QLAGVSGN 15


>sp|PYRG_SULTO|CTP synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 IAGVSNNG 9
I+GVS NG
Sbjct: 481 ISGVSENG 488


>sp|Y018_METJA|UNCHARACTERIZED protein MJ0018|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IAGVSNNGS 10
I GVSN+GS
Sbjct: 426 IEGVSNSGS 434




25|SequenceR|130|121|QSDPCQIAGV

>sp|PYRG_METPE|CTP synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 3 DPCQIAGV 10
+PCQ+A V
Sbjct: 333 EPCQLADV 340


>sp|SAT_HYPBU|SULFATE adenylyltransferase|Hyperthermus butylicus (strain DSM 5456

Query: 3 DPCQIAGV 10
DP +IAGV
Sbjct: 87 DPGEIAGV 94


>sp|RPO1C_METMA|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanosarcina mazei (strain ATCC

Query: 3 DPCQIAGV 10
+PC AGV
Sbjct: 57 EPCDAAGV 64


>sp|RPO1C_METAC|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanosarcina acetivorans (strain

Query: 3 DPCQIAGV 10
+PC AGV
Sbjct: 54 EPCDAAGV 61


>sp|Y781_METJA|UNCHARACTERIZED protein MJ0781|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 QSDPCQIAGV 10
+ + C+IAG+
Sbjct: 663 EEEVCEIAGI 672




26|SequenceR|135|126|DPCEFQSDPC

>sp|RPO1N_THEAC|DNA-DIRECTED RNA polymerase subunit Rpo1N|Thermoplasma acidophilum (strain ATCC

Query: 3 CEFQSDP 9
CEF+ DP
Sbjct: 583 CEFEDDP 589


>sp|PSB1_HALMA|PROTEASOME subunit beta 1|Haloarcula marismortui (strain ATCC 43049

Query: 4 EFQSDP 9
EFQSDP
Sbjct: 18 EFQSDP 23


>sp|IF1A_METLZ|TRANSLATION initiation factor 1A|Methanocorpusculum labreanum (strain ATCC

Query: 2 PCEFQSDPC 10
P +FQ D C
Sbjct: 77 PWDFQDDKC 85


>sp|JAMM1_PYRFU|DESAMPYLASE furiosus (strain ATCC 43587

Query: 2 PCEFQSDP 9
P EF+ DP
Sbjct: 59 PVEFEMDP 66


>sp|T2M2_METJA|TYPE II restriction enzyme MjaII|Methanocaldococcus jannaschii (strain

Query: 1 DPCEFQSDPC 10
DP E +PC
Sbjct: 206 DPTENPENPC 215


>sp|Y35K_HALSI|UNCHARACTERIZED 36 kDa protein|Halobacterium salinarum (Halobacterium halobium)

Query: 1 DPCEFQSDP 9
DP E +SDP
Sbjct: 297 DPSEPRSDP 305




27|SequenceR|140|131|CCTSFDPCEF

>sp|CMR7A_SACS2|CRISPR system CMR subunit Cmr7|Saccharolobus solfataricus (strain ATCC

Query: 4 SFDPCEF 10
+FDPC++
Sbjct: 73 TFDPCDY 79


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 CCTSFD 6
CCT+FD
Sbjct: 276 CCTAFD 281


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 CCTSFD 6
CCT+FD
Sbjct: 276 CCTAFD 281


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 CCTSFD 6
CCT+FD
Sbjct: 276 CCTAFD 281


>sp|PUS10_ARCFU|TRNA pseudouridine synthase Pus10|Archaeoglobus fulgidus (strain ATCC

Query: 1 CCTSFDPCE 9
CC +FD E
Sbjct: 23 CCNAFDRVE 31


>sp|FBPAP_METJA|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 CCTSFDPCEF 10
CC DP F
Sbjct: 134 CCDKTDPTAF 143


>sp|DP2L_METVS|DNA polymerase II large subunit|Methanococcus vannielii (strain ATCC

Query: 3 TSFDPCE 9
T F PCE
Sbjct: 758 THFKPCE 764


>sp|TBP_METVS|TATA-BOX-BINDING protein|Methanococcus vannielii (strain ATCC 35089

Query: 2 CTSFDPCEF 10
CT ++P +F
Sbjct: 121 CTEYEPEQF 129


>sp|TBP_METM7|TATA-BOX-BINDING protein|Methanococcus maripaludis (strain C7 /

Query: 2 CTSFDPCEF 10
CT ++P +F
Sbjct: 121 CTEYEPEQF 129


>sp|TBP_METM6|TATA-BOX-BINDING protein|Methanococcus maripaludis (strain C6 /

Query: 2 CTSFDPCEF 10
CT ++P +F
Sbjct: 121 CTEYEPEQF 129


>sp|HIS8_METJA|HISTIDINOL-PHOSPHATE aminotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CTSFD 6
CTSFD
Sbjct: 340 CTSFD 344


>sp|TBP_METMP|TATA-BOX-BINDING protein|Methanococcus maripaludis (strain DSM 14266

Query: 2 CTSFDPCEF 10
CT ++P +F
Sbjct: 121 CTEYEPEQF 129


>sp|TRM1_METST|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosphaera stadtmanae

Query: 1 CCTSFDPC 8
C T DPC
Sbjct: 163 CGTYHDPC 170


>sp|ACDA_METBU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanococcoides

Query: 1 CCTSFDPCEF 10
C +F PC+
Sbjct: 73 CYCTFGPCDL 82




28|SequenceR|145|136|GDVMVCCTSF

>sp|HEM1_METHJ|GLUTAMYL-TRNA reductase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 DVMVCCTS 9
DV++CCT+
Sbjct: 234 DVIICCTA 241


>sp|COFE_ARCFU|COENZYME F420:L-glutamate ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GDVMVCCTS 9
GDV+V C++
Sbjct: 33 GDVLVVCST 41


>sp|NEP1_ARCFU|RIBOSOMAL RNA small subunit methyltransferase|Archaeoglobus fulgidus (strain

Query: 1 GDVMVCCTSF 10
GDV VC +F
Sbjct: 162 GDVAVCIGAF 171


>sp|Y1341_METJA|UNCHARACTERIZED protein MJ1341|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GDVMVCCT 8
GD++VC T
Sbjct: 151 GDIVVCST 158


>sp|HEM1_METVS|GLUTAMYL-TRNA reductase|Methanococcus vannielii (strain ATCC 35089

Query: 2 DVMVCCTS 9
DV++C TS
Sbjct: 218 DVIICATS 225


>sp|HEM1_METMP|GLUTAMYL-TRNA reductase|Methanococcus maripaludis (strain DSM 14266

Query: 2 DVMVCCTS 9
DV++C TS
Sbjct: 219 DVIICATS 226


>sp|HEM1_METM7|GLUTAMYL-TRNA reductase|Methanococcus maripaludis (strain C7 /

Query: 2 DVMVCCTS 9
DV++C TS
Sbjct: 219 DVIICATS 226


>sp|HEM1_METM6|GLUTAMYL-TRNA reductase|Methanococcus maripaludis (strain C6 /

Query: 2 DVMVCCTS 9
DV++C TS
Sbjct: 219 DVIICATS 226


>sp|HEM1_METM5|GLUTAMYL-TRNA reductase|Methanococcus maripaludis (strain C5 /

Query: 2 DVMVCCTS 9
DV++C TS
Sbjct: 219 DVIICATS 226


>sp|HEM1_METB6|GLUTAMYL-TRNA reductase|Methanoregula boonei (strain DSM 21154

Query: 2 DVMVCCTS 9
DV++ CTS
Sbjct: 233 DVVISCTS 240


>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1 (strain

Query: 1 GDVMVCCTSF 10
GD + CT F
Sbjct: 798 GDYLFSCTRF 807


>sp|AROE_HALMA|SHIKIMATE dehydrogenase (NADP(+))|Haloarcula marismortui (strain ATCC 43049

Query: 1 GDVMVCCTS 9
D++V CTS
Sbjct: 177 ADILVNCTS 185


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 5 VCCTSF 10
+CCT+F
Sbjct: 275 LCCTAF 280


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 5 VCCTSF 10
+CCT+F
Sbjct: 275 LCCTAF 280


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 5 VCCTSF 10
+CCT+F
Sbjct: 275 LCCTAF 280


>sp|NADA_METMA|QUINOLINATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 VCCTS 9
+CCTS
Sbjct: 125 ICCTS 129


>sp|NADA1_METAC|QUINOLINATE synthase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 VCCTS 9
+CCTS
Sbjct: 125 ICCTS 129


>sp|NADA_METBF|QUINOLINATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 5 VCCTS 9
+CCTS
Sbjct: 125 ICCTS 129




29|SequenceR|150|141|CCGWSGDVMV

>sp|SYP_HALMA|PROLINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 2 CGWSGD 7
CGW GD
Sbjct: 431 CGWCGD 436


>sp|PRIS_STAMF|DNA primase small subunit PriS|Staphylothermus marinus (strain ATCC

Query: 2 CGWSGDVMV 10
C WSG+++V
Sbjct: 316 CPWSGNIVV 324


>sp|SYR_HALMA|ARGININE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 CCGWSGDV 8
CCG GDV
Sbjct: 471 CCGILGDV 478


>sp|PUS10_KORCO|TRNA pseudouridine synthase Pus10|Korarchaeum cryptofilum (strain OPF8)

Query: 2 CGWSGDV 8
CGW G +
Sbjct: 160 CGWKGKI 166


>sp|RNZ_METMP|RIBONUCLEASE Z|Methanococcus maripaludis (strain DSM 14266

Query: 1 CCGWSGDVM 9
C G+SGD +
Sbjct: 203 CVGYSGDTI 211


>sp|RNZ_METM7|RIBONUCLEASE Z|Methanococcus maripaludis (strain C7 /

Query: 1 CCGWSGDVM 9
C G+SGD +
Sbjct: 203 CVGYSGDTI 211


>sp|RNZ_METM6|RIBONUCLEASE Z|Methanococcus maripaludis (strain C6 /

Query: 1 CCGWSGDVM 9
C G+SGD +
Sbjct: 203 CVGYSGDTI 211


>sp|RNZ_METM5|RIBONUCLEASE Z|Methanococcus maripaludis (strain C5 /

Query: 1 CCGWSGDVM 9
C G+SGD +
Sbjct: 203 CVGYSGDTI 211


>sp|XYLS_SACS2|ALPHA-XYLOSIDASE solfataricus (strain ATCC 35092

Query: 4 WSGDVM 9
WSGDV+
Sbjct: 425 WSGDVL 430


>sp|RNZ_METVS|RIBONUCLEASE Z|Methanococcus vannielii (strain ATCC 35089

Query: 1 CCGWSGDVM 9
C G+SGD +
Sbjct: 210 CIGYSGDTI 218


>sp|METX_METTH|PROBABLE acyltransferase|Methanothermobacter thermautotrophicus (strain

Query: 3 GWSGD 7
GWSGD
Sbjct: 53 GWSGD 57


>sp|AROK_ARCFU|SHIKIMATE kinase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 CCGWSGD 7
CCG SG+
Sbjct: 223 CCGISGN 229


>sp|RNZ_META3|RIBONUCLEASE Z|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 CCGWSGDVM 9
C +SGD M
Sbjct: 204 CVAYSGDTM 212


>sp|EF1A_CENSY|ELONGATION factor 1-alpha|Cenarchaeum symbiosum (strain A)

Query: 3 GWSGDVMV 10
GW GD +V
Sbjct: 197 GWKGDNLV 204


>sp|SYFA_METMA|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 CGWSG 6
CGW G
Sbjct: 317 CGWGG 321


>sp|SYFA_METBF|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina barkeri (strain Fusaro /

Query: 2 CGWSG 6
CGW G
Sbjct: 314 CGWGG 318


>sp|SYFA_METAC|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 CGWSG 6
CGW G
Sbjct: 314 CGWGG 318


>sp|Y1127_METTP|PUTATIVE nickel insertion protein|Methanothrix thermoacetophila (strain

Query: 2 CGWSGDVMV 10
CG SGD+++
Sbjct: 10 CGASGDMIL 18


>sp|SYI_NATPD|ISOLEUCINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 4 WSGDV 8
WSGDV
Sbjct: 474 WSGDV 478


>sp|NDRZ_PYRFU|VITAMIN B12-dependent ribonucleoside-diphosphate reductase|Pyrococcus

Query: 2 CGWS 5
CGWS
Sbjct: 1732 CGWS 1735


>sp|MTHK_METTH|CALCIUM-GATED potassium channel MthK|Methanothermobacter thermautotrophicus

Query: 2 CGWS 5
CGWS
Sbjct: 121 CGWS 124


>sp|VORB_PYRHO|KETOISOVALERATE oxidoreductase subunit VorB|Pyrococcus horikoshii (strain ATCC

Query: 3 GWSGD 7
GW+GD
Sbjct: 107 GWAGD 111


>sp|VORB_PYRFU|KETOISOVALERATE oxidoreductase subunit VorB|Pyrococcus furiosus (strain ATCC 43587

Query: 3 GWSGD 7
GW+GD
Sbjct: 107 GWAGD 111


>sp|VORB_PYRAB|KETOISOVALERATE oxidoreductase subunit VorB|Pyrococcus abyssi (strain GE5 /

Query: 3 GWSGD 7
GW+GD
Sbjct: 107 GWAGD 111


>sp|COFC_METTP|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanothrix thermoacetophila (strain DSM

Query: 3 GWSGDVMV 10
GW D+++
Sbjct: 92 GWPADILI 99


>sp|EF2_METST|ELONGATION factor 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 WSGDV 8
WSGD+
Sbjct: 271 WSGDI 275


>sp|RL18_SULTO|LARGE ribosomal subunit protein uL18|Sulfurisphaera tokodaii (strain

Query: 3 GWSGDV 8
GW GD+
Sbjct: 72 GWKGDL 77


>sp|RL18_ARCFU|LARGE ribosomal subunit protein uL18|Archaeoglobus fulgidus (strain

Query: 3 GWSGDV 8
GW GD+
Sbjct: 73 GWKGDL 78


>sp|G1PDH_METTP|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanothrix thermoacetophila (strain DSM

Query: 2 CGWSGDVMV 10
CG+ DV++
Sbjct: 64 CGFEADVVI 72




30|SequenceR|155|146|AQPMPCCGWS

>sp|NDRZ_PYRFU|VITAMIN B12-dependent ribonucleoside-diphosphate reductase|Pyrococcus

Query: 5 PCCGWS 10
P CGWS
Sbjct: 1730 PVCGWS 1735


>sp|FPOB_METMA|F(420)H(2) dehydrogenase subunit B|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 QPMPCCG 8
QPM CCG
Sbjct: 57 QPMGCCG 63


>sp|GGR_METHJ|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 QPMPC 6
QP+PC
Sbjct: 265 QPLPC 269


>sp|Y2663_HALWD|UPF0212 protein HQ_2663A|Haloquadratum walsbyi (strain DSM 16790

Query: 1 AQPMPCCG 8
A P P CG
Sbjct: 49 ATPCPACG 56


>sp|LEUC_METTH|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanothermobacter

Query: 5 PCCG 8
PCCG
Sbjct: 357 PCCG 360


>sp|LEUC_METMA|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina mazei

Query: 5 PCCG 8
PCCG
Sbjct: 359 PCCG 362


>sp|LEUC_METAC|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina

Query: 5 PCCG 8
PCCG
Sbjct: 359 PCCG 362


>sp|LEUC1_ARCFU|3-ISOPROPYLMALATE dehydratase large subunit 1|Archaeoglobus fulgidus (strain ATCC

Query: 5 PCCG 8
PCCG
Sbjct: 356 PCCG 359


>sp|LEUC_METB6|3-ISOPROPYLMALATE dehydratase large subunit|Methanoregula boonei (strain DSM 21154

Query: 5 PCCG 8
PCCG
Sbjct: 355 PCCG 358


>sp|PYRI_METHJ|ASPARTATE carbamoyltransferase regulatory chain|Methanospirillum hungatei

Query: 3 PMPCC 7
P PCC
Sbjct: 114 PNPCC 118


>sp|RBL_PYRHO|RIBULOSE bisphosphate carboxylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 PMPCCGWS 10
P P GWS
Sbjct: 159 PKPKMGWS 166


>sp|RBL_PYRFU|RIBULOSE bisphosphate carboxylase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 PMPCCGWS 10
P P GWS
Sbjct: 154 PKPKMGWS 161


>sp|RBL_PYRAB|RIBULOSE bisphosphate carboxylase|Pyrococcus abyssi (strain GE5 /

Query: 3 PMPCCGWS 10
P P GWS
Sbjct: 158 PKPKMGWS 165


>sp|TBP_CENSY|TATA-BOX-BINDING protein|Cenarchaeum symbiosum (strain A)

Query: 4 MPCC 7
MPCC
Sbjct: 31 MPCC 34




31|SequenceR|160|151|DECCSAQPMP

>sp|HEM1_METHJ|GLUTAMYL-TRNA reductase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 CCSAQPMP 10
CC+A P P
Sbjct: 238 CCTAAPHP 245


>sp|GUAAB_METBF|GMP synthase [glutamine-hydrolyzing] subunit B|Methanosarcina barkeri

Query: 1 DECCSAQPMP 10
DE C P P
Sbjct: 179 DEICERMPFP 188


>sp|GUAAB_METMA|GMP synthase [glutamine-hydrolyzing] subunit B|Methanosarcina mazei

Query: 1 DECCSAQPMP 10
DE C P P
Sbjct: 179 DEICERMPFP 188


>sp|MUTS_HALWD|DNA mismatch repair protein MutS|Haloquadratum walsbyi (strain DSM

Query: 2 ECCSAQP 8
+CC A P
Sbjct: 42 DCCEAHP 48


>sp|KDXD_HALVD|PROBABLE 2-keto-3-deoxyxylonate dehydratase|Haloferax volcanii (strain ATCC

Query: 1 DECCSAQP 8
D CCS P
Sbjct: 185 DRCCSIGP 192




32|SequenceR|165|156|CCHVRDECCS

>sp|APE1_SACS2|PROBABLE aminopeptidase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 HVRDECCS 10
H+R+E CS
Sbjct: 702 HIREEVCS 709


>sp|Y3856_METAC|UPF0285 protein MA_3856|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 CCHVRDECCS 10
C H+ EC S
Sbjct: 284 CTHLDQECLS 293


>sp|SYS_THEON|SERINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 3 HVRDECC 9
H++++CC
Sbjct: 447 HMKEKCC 453


>sp|SYS_THEKO|SERINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 HVRDECC 9
H++++CC
Sbjct: 447 HMKEKCC 453


>sp|MCH_METKA|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanopyrus kandleri (strain AV19 /

Query: 3 HVRDEC 8
HV DEC
Sbjct: 152 HVADEC 157


>sp|PROB_METMA|GLUTAMATE 5-kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 CCHVRDEC 8
C H R+ C
Sbjct: 28 CDHTRENC 35




33|SequenceR|170|161|FAGHPCCHVR

>sp|Y1181_METJA|UNCHARACTERIZED protein MJ1181|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FAGHPCC 7
+A HPCC
Sbjct: 80 WANHPCC 86


>sp|Y1066_METJA|UNCHARACTERIZED protein MJ1066|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FAGHPC 6
+AGHPC
Sbjct: 132 YAGHPC 137


>sp|PHSG_THELN|MALTODEXTRIN phosphorylase|Thermococcus litoralis (strain ATCC 51850

Query: 3 GHPCCH 8
GHPC H
Sbjct: 797 GHPCWH 802


>sp|Y1199_ARCFU|UNCHARACTERIZED protein AF_1199|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 FAGHPC 6
FA HPC
Sbjct: 371 FASHPC 376


>sp|AMPD_PYRHO|ANHYDROMEVALONATE phosphate decarboxylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 FAGHP 5
FAGHP
Sbjct: 342 FAGHP 346


>sp|Y155_ARCFU|UNCHARACTERIZED protein AF_0155|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 PCCH 8
PCCH
Sbjct: 85 PCCH 88


>sp|SYE_METAR|GLUTAMATE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 AGHPCCH 8
AG PC H
Sbjct: 215 AGKPCPH 221


>sp|SIHH_METMP|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanococcus maripaludis (strain DSM 14266

Query: 3 GHPC 6
GHPC
Sbjct: 343 GHPC 346


>sp|SIHH_METJA|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GHPC 6
GHPC
Sbjct: 343 GHPC 346


>sp|FEN_METB6|FLAP endonuclease 1|Methanoregula boonei (strain DSM 21154

Query: 3 GHPC 6
GHPC
Sbjct: 291 GHPC 294


>sp|ACDB2_METJA|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanocaldococcus

Query: 3 GHPC 6
GHPC
Sbjct: 391 GHPC 394


>sp|NIFE_METTH|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 2 AGHPCCH 8
G PCC+
Sbjct: 45 GGGPCCN 51


>sp|F16A1_HALMA|FRUCTOSE-1,6-BISPHOSPHATASE class 1 1|Haloarcula marismortui (strain ATCC 43049

Query: 1 FAGHPCCHV 9
F GHP ++
Sbjct: 238 FEGHPMAYI 246


>sp|QUED_METJA|PUTATIVE 6-carboxy-5,6,7,8-tetrahydropterin synthase|Methanocaldococcus

Query: 3 GHPCCHV 9
GHP C V
Sbjct: 22 GHPTCGV 28


>sp|HYD1D_PYRFU|SULFHYDROGENASE 1 subunit delta|Pyrococcus furiosus (strain ATCC 43587

Query: 3 GHPC 6
GHPC
Sbjct: 171 GHPC 174




34|SequenceR|175|166|HVLDCFAGHP

>sp|Y1514_METJA|PUTATIVE gamma-glutamylcyclotransferase MJ1514|Methanocaldococcus

Query: 3 LDCFAGHP 10
+DC GHP
Sbjct: 70 IDCLEGHP 77


>sp|UPPP_METTP|UNDECAPRENYL-DIPHOSPHATASE thermoacetophila (strain DSM 6194

Query: 3 LDCFAGHP 10
LDC AG P
Sbjct: 193 LDCLAGSP 200


>sp|LYSJ_AERPE|PUTATIVE [LysW]-aminoadipate semialdehyde/glutamate semialdehyde

Query: 3 LDCFAGH 9
LDC AGH
Sbjct: 35 LDCHAGH 41


>sp|HIS8_METPE|HISTIDINOL-PHOSPHATE aminotransferase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 VLDCFAGH 9
VL CF GH
Sbjct: 94 VLRCFIGH 101


>sp|ARGD_METTH|ACETYLORNITHINE aminotransferase|Methanothermobacter thermautotrophicus (strain

Query: 3 LDCFAG 8
+DCFAG
Sbjct: 42 IDCFAG 47


>sp|FTTA_METMP|TRANSCRIPTION termination factor FttA|Methanococcus maripaludis (strain DSM 14266

Query: 1 HVLDCFAGH 9
H L+ F+GH
Sbjct: 570 HTLEGFSGH 578


>sp|MUTS_HALWD|DNA mismatch repair protein MutS|Haloquadratum walsbyi (strain DSM

Query: 3 LDCFAGHP 10
LDC HP
Sbjct: 41 LDCCEAHP 48


>sp|VORB_METTM|KETOISOVALERATE oxidoreductase subunit VorB|Methanothermobacter marburgensis

Query: 4 DCFAGHP 10
DC+ G+P
Sbjct: 22 DCYFGYP 28


>sp|VORB_METTH|KETOISOVALERATE oxidoreductase subunit VorB|Methanothermobacter

Query: 4 DCFAGHP 10
DC+ G+P
Sbjct: 22 DCYFGYP 28


>sp|HTPX2_METMA|PROTEASE HtpX homolog 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 VLDCFAGHP 10
++D F+ HP
Sbjct: 269 IMDIFSTHP 277


>sp|THSA_THEK8|CHAPERONIN subunit alpha|Thermococcus sp. (strain KS-8)

Query: 3 LDCFAGHP 10
+D FAG P
Sbjct: 479 IDVFAGEP 486


>sp|TRUD_METKA|PROBABLE tRNA pseudouridine synthase D|Methanopyrus kandleri (strain AV19 /

Query: 1 HVLDCFAGHP 10
H+L+ A HP
Sbjct: 240 HILEHLARHP 249


>sp|PRIL_ARCFU|DNA primase large subunit PriL|Archaeoglobus fulgidus (strain ATCC

Query: 2 VLDCFAGHP 10
V DC HP
Sbjct: 351 VADCRVSHP 359


>sp|HIS7_HALMA|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Haloarcula marismortui (strain ATCC 43049

Query: 1 HVLDCFAGH 9
H+LD F+ H
Sbjct: 40 HMLDSFSTH 48


>sp|Y1110_METTH|UNCHARACTERIZED protein MTH_1110|Methanothermobacter thermautotrophicus (strain

Query: 2 VLDCFAGHP 10
VL C++ HP
Sbjct: 19 VLSCWSLHP 27




35|SequenceR|180|171|TICRTHVLDC

>sp|CDC6_METHJ|ORC1-TYPE DNA replication protein|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 TICRTHVLDC 10
T+CR L+C
Sbjct: 93 TVCRVIHLNC 102


>sp|BIOB_META3|BIOTIN synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 ICRTHVLD 9
IC TH D
Sbjct: 174 ICTTHTYD 181


>sp|MCRC_METTH|METHYL-COENZYME M reductase I operon|Methanothermobacter thermautotrophicus

Query: 5 THVLDC 10
THV+DC
Sbjct: 6 THVVDC 11


>sp|MCRC_METTM|METHYL-COENZYME M reductase I operon|Methanothermobacter marburgensis (strain

Query: 5 THVLDC 10
THV+DC
Sbjct: 6 THVVDC 11




36|SequenceR|185|176|HTGTPTICRT

>sp|Y1627_PYRAE|PUTATIVE HTH-type transcriptional regulatory protein|Pyrobaculum

Query: 1 HTGTPTIC 8
HT P+IC
Sbjct: 66 HTNAPSIC 73


>sp|AROC_METBU|CHORISMATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 2 TGTPTICR 9
TG P ICR
Sbjct: 289 TGMPIICR 296


>sp|HELS_THEKO|ATP-DEPENDENT DNA helicase Hel308|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 TGTPTIC 8
T TPT+C
Sbjct: 326 TATPTLC 332


>sp|SURE_METST|5'-NUCLEOTIDASE SurE|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 TGTPTIC 8
TGTPT C
Sbjct: 68 TGTPTDC 74


>sp|KCY_THESM|CYTIDYLATE kinase|Thermococcus sibiricus (strain DSM 12597

Query: 2 TGTPTICR 9
+GT T+CR
Sbjct: 16 SGTTTLCR 23


>sp|KCY_THEKO|CYTIDYLATE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 TGTPTICR 9
+GT T+CR
Sbjct: 16 SGTTTLCR 23


>sp|KCY_PYRFU|CYTIDYLATE kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 TGTPTICR 9
+GT T+CR
Sbjct: 16 SGTTTLCR 23


>sp|KCY_PYRAB|CYTIDYLATE kinase|Pyrococcus abyssi (strain GE5 /

Query: 2 TGTPTICR 9
+GT T+CR
Sbjct: 16 SGTTTLCR 23


>sp|NARO_HALVD|TRANSCRIPTIONAL regulator NarO|Haloferax volcanii (strain ATCC 29605

Query: 1 HTGTPTICR 9
H P+ICR
Sbjct: 10 HVADPSICR 18


>sp|AROC_METTP|CHORISMATE synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 TGTPTICR 9
TG P +CR
Sbjct: 301 TGAPILCR 308


>sp|PANB_IGNH4|3-METHYL-2-OXOBUTANOATE hydroxymethyltransferase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 GTPTIC 8
G PTIC
Sbjct: 197 GVPTIC 202


>sp|SYL_METTP|LEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 4 TPTICR 9
TP ICR
Sbjct: 433 TPVICR 438


>sp|GSA_METKA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanopyrus kandleri (strain AV19 /

Query: 1 HTGTPTI 7
H GTPT+
Sbjct: 87 HYGTPTL 93


>sp|AROC_METAR|CHORISMATE synthase|Methanocella arvoryzae (strain DSM 22066

Query: 2 TGTPTICR 9
TG P +CR
Sbjct: 289 TGMPIVCR 296


>sp|GATE_THESM|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Thermococcus sibiricus (strain DSM 12597

Query: 3 GTPTIC 8
G PTIC
Sbjct: 152 GIPTIC 157


>sp|GATE_THEGJ|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Thermococcus gammatolerans (strain DSM

Query: 3 GTPTIC 8
G PTIC
Sbjct: 152 GIPTIC 157


>sp|GATE_PYRHO|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Pyrococcus horikoshii (strain ATCC

Query: 3 GTPTIC 8
G PTIC
Sbjct: 155 GIPTIC 160


>sp|GATE_PYRFU|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Pyrococcus furiosus (strain ATCC 43587

Query: 3 GTPTIC 8
G PTIC
Sbjct: 151 GIPTIC 156


>sp|GATE_PYRAB|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Pyrococcus abyssi (strain GE5 /

Query: 3 GTPTIC 8
G PTIC
Sbjct: 155 GIPTIC 160


>sp|CBIF_METJA|COBALT-PRECORRIN-4 C(11)-methyltransferase|Methanocaldococcus jannaschii (strain

Query: 1 HTGTPTI 7
HTG P+I
Sbjct: 84 HTGDPSI 90


>sp|SYA_PICTO|ALANINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 TGTPTI 7
TGTPT+
Sbjct: 253 TGTPTV 258


>sp|MTMC2_METBA|MONOMETHYLAMINE corrinoid protein 2|Methanosarcina barkeri

Query: 3 GTPTICR 9
GTP +C+
Sbjct: 21 GTPELCK 27


>sp|MTMC1_METBA|MONOMETHYLAMINE corrinoid protein 1|Methanosarcina barkeri

Query: 3 GTPTICR 9
GTP +C+
Sbjct: 21 GTPELCK 27


>sp|EF2_METJA|ELONGATION factor 2|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HTGTPTICR 9
H G ++CR
Sbjct: 304 HAGAVSVCR 312


>sp|SURE_METJA|5'-NUCLEOTIDASE SurE|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 TGTPTIC 8
+GTPT C
Sbjct: 71 SGTPTDC 77


>sp|MTRD_METJA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit D|Methanocaldococcus jannaschii (strain

Query: 3 GTPTIC 8
G PT+C
Sbjct: 136 GVPTVC 141


>sp|SURE_METM5|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain C5 /

Query: 2 TGTPTIC 8
+GTPT C
Sbjct: 72 SGTPTDC 78


>sp|SURE_METM7|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain C7 /

Query: 2 TGTPTIC 8
+GTPT C
Sbjct: 72 SGTPTDC 78


>sp|SURE_METMP|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain DSM 14266

Query: 2 TGTPTIC 8
+GTPT C
Sbjct: 70 SGTPTDC 76


>sp|LYSY_PYRNV|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 1 HTGTPTICRT 10
H+G +C T
Sbjct: 24 HSGVEVVCAT 33


>sp|LYSY_PYRCJ|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 1 HTGTPTICRT 10
H+G +C T
Sbjct: 24 HSGVEVVCAT 33


>sp|LYSY_PYRAE|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 1 HTGTPTICRT 10
H+G +C T
Sbjct: 23 HSGVEVVCAT 32


>sp|SURE_METM6|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain C6 /

Query: 2 TGTPTIC 8
+GTPT C
Sbjct: 72 SGTPTDC 78




37|SequenceR|190|181|KKALPHTGTP

>sp|SPSS_METBF|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina barkeri (strain Fusaro /

Query: 2 KALPHTGTP 10
K +PH+G+P
Sbjct: 129 KTVPHSGSP 137


>sp|GCS2_HALMA|GLUTAMATE--CYSTEINE ligase|Haloarcula marismortui (strain ATCC 43049

Query: 2 KALPHTGTP 10
+ALP+TG P
Sbjct: 189 EALPNTGMP 197


>sp|GCS2_NATPD|GLUTAMATE--CYSTEINE ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 KALPHTGTP 10
+ALP+TG P
Sbjct: 188 EALPNTGMP 196


>sp|SPSS_METAC|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 KALPHTGTP 10
K +PH G+P
Sbjct: 129 KVVPHAGSP 137


>sp|HUTI_PYRAR|IMIDAZOLONEPROPIONASE arsenaticum (strain DSM 13514

Query: 2 KALPHTGT 9
KA+PH GT
Sbjct: 190 KAIPHAGT 197


>sp|KAE1B_METHJ|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 KALPHTGTP 10
K LPH G P
Sbjct: 164 KGLPHPGGP 172


>sp|GCS2_HALWD|GLUTAMATE--CYSTEINE ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 KALPHTGTP 10
+ALP+TG P
Sbjct: 190 EALPNTGMP 198


>sp|FPOM_METMA|F(420)H(2) dehydrogenase subunit M|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 LPHTGTP 10
LP+TG+P
Sbjct: 269 LPNTGSP 275


>sp|AGMT_PYRHO|AGMATINASE horikoshii (strain ATCC 700860

Query: 4 LPHTGTP 10
+P TGTP
Sbjct: 220 VPETGTP 226


>sp|SYM_KORCO|METHIONINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 3 ALPHTGT 9
A+PH GT
Sbjct: 14 AVPHLGT 20


>sp|SYE_PYRAE|GLUTAMATE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 KKALPHTGTP 10
KKA PH P
Sbjct: 215 KKACPHREQP 224


>sp|KAE1B_METAC|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 KKALPHTGTP 10
+ LPH G P
Sbjct: 171 RAGLPHPGGP 180


>sp|APAUH_THEKO|N(1)-AMINOPROPYLAGMATINE ureohydrolase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 LPHTGTP 10
+P TGTP
Sbjct: 222 VPSTGTP 228


>sp|SPSS_METMA|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 KALPHTGTP 10
+ +PH G+P
Sbjct: 129 EVVPHAGSP 137


>sp|KAE1_METKA|TRNA N6-adenosine threonylcarbamoyltransferase|Methanopyrus kandleri

Query: 1 KKALPHTGTP 10
K LPH G P
Sbjct: 172 KVGLPHPGGP 181




38|SequenceR|195|186|RQAPLKKALP

>sp|AOCD_METTH|ORNITHINE cyclodeaminase|Methanothermobacter thermautotrophicus (strain

Query: 1 RQAPLKKALP 10
R+AP+ + LP
Sbjct: 84 RRAPMDRVLP 93


>sp|MUTL_METLZ|DNA mismatch repair protein MutL|Methanocorpusculum labreanum (strain

Query: 1 RQAPLKK 7
RQAPLK+
Sbjct: 375 RQAPLKQ 381




39|SequenceR|200|191|VARNTRQAPL

>sp|GSA_METHJ|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 VARNTRQAP 9
+ R+TRQ P
Sbjct: 170 IVRHTRQVP 178


>sp|AROD_THEGJ|3-DEHYDROQUINATE dehydratase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 VARNTRQA 8
VARN R+A
Sbjct: 7 VARNAREA 14




40|SequenceR|205|196|SSSLAVARNT

***** No hits found ******


41|SequenceR|210|201|DPCMVSSSLA

>sp|CARB_METS3|CARBAMOYL phosphate synthase large chain|Methanobrevibacter smithii (strain

Query: 1 DPCMVSSSLA 10
D C V SSLA
Sbjct: 563 DYCCVHSSLA 572




42|SequenceR|215|206|CRSRADPCMV

>sp|GATB_METHJ|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanospirillum hungatei JF-1 (strain

Query: 1 CRSRADP 7
CR RADP
Sbjct: 453 CRGRADP 459


>sp|AROC_ARCFU|CHORISMATE synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 RSRADPCMV 10
+ R DPC+V
Sbjct: 322 KGRHDPCIV 330


>sp|ARGJ_METAC|GLUTAMATE N-acetyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 CRSRADPCM 9
C+S PCM
Sbjct: 229 CKSGIKPCM 237


>sp|COFG_ARCFU|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 CRSRADPC 8
CR+R D C
Sbjct: 18 CRNRCDYC 25


>sp|Y207_METJA|UNCHARACTERIZED protein MJ0207|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 RSRADPC 8
RS+ DPC
Sbjct: 8 RSKNDPC 14


>sp|THIC_METJA|PHOSPHOMETHYLPYRIMIDINE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CRSRADPCMV 10
CR + CMV
Sbjct: 254 CREKGVQCMV 263


>sp|THIC_ARCFU|PHOSPHOMETHYLPYRIMIDINE synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 CRSRADPCMV 10
CR + CMV
Sbjct: 251 CREKGVQCMV 260


>sp|ARGJ_METMA|GLUTAMATE N-acetyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 CRSRADPCM 9
C+S PC+
Sbjct: 229 CKSGVKPCL 237


>sp|AROC_KORCO|CHORISMATE synthase|Korarchaeum cryptofilum (strain OPF8)

Query: 2 RSRADPC 8
+ R DPC
Sbjct: 326 KGRHDPC 332


>sp|APE2_AERPE|HOMING endonuclease I-ApeII|Aeropyrum pernix (strain ATCC 700893

Query: 1 CRSRADPCM 9
CR R DP
Sbjct: 32 CRVRVDPVF 40




43|SequenceR|220|211|TSGDPCRSRA

>sp|CBIE_METJA|PROBABLE cobalt-precorrin-7 C(5)-methyltransferase|Methanocaldococcus

Query: 1 TSGDPCRS 8
++GDPC S
Sbjct: 75 STGDPCFS 82


>sp|SYR_HALLT|ARGININE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 SGDPCRSRA 10
+G+P R+RA
Sbjct: 184 AGEPARARA 192


>sp|SYE_METKA|GLUTAMATE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 5 PCRSR 9
PCRSR
Sbjct: 211 PCRSR 215




44|SequenceR|225|216|PLECCTSGDP

>sp|ACDG_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit gamma|Archaeoglobus fulgidus

Query: 5 CTSGDP 10
CTSGDP
Sbjct: 145 CTSGDP 150


>sp|COMC_METTH|L-SULFOLACTATE dehydrogenase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 PLECCTSGD 9
P E CT GD
Sbjct: 255 PEEMCTKGD 263


>sp|6PGD_HALVD|6-PHOSPHOGLUCONATE dehydrogenase, NAD(+)-dependent, decarboxylating|Haloferax volcanii

Query: 2 LECCTSGDP 10
L+C TSG P
Sbjct: 113 LDCGTSGGP 121


>sp|COMC_METJA|L-SULFOLACTATE dehydrogenase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PLECCTSGD 9
P E CT GD
Sbjct: 254 PEERCTKGD 262


>sp|COMC_METFV|L-SULFOLACTATE dehydrogenase|Methanothermus fervidus (strain ATCC 43054

Query: 1 PLECCTSGD 9
P + CT GD
Sbjct: 255 PSQMCTKGD 263


>sp|ASSY_PICTO|ARGININOSUCCINATE synthase|Picrophilus torridus (strain ATCC 700027

Query: 1 PLECCTSGDP 10
P + C SG+P
Sbjct: 201 PPQYCGSGEP 210


>sp|DTDA_METKA|D-AMINOACYL-TRNA deacylase|Methanopyrus kandleri (strain AV19 /

Query: 1 PLECCTSGDP 10
PLE CT+ DP
Sbjct: 107 PLEVCTA-DP 115


>sp|RPO10_PYRIL|DNA-DIRECTED RNA polymerase subunit Rpo10|Pyrobaculum islandicum (strain DSM

Query: 1 PLECCTSGDP 10
P+ C T G P
Sbjct: 4 PIRCFTCGKP 13


>sp|RPO10_PYRAE|DNA-DIRECTED RNA polymerase subunit Rpo10|Pyrobaculum aerophilum (strain ATCC

Query: 1 PLECCTSGDP 10
P+ C T G P
Sbjct: 4 PIRCFTCGKP 13


>sp|RPO10_PYRCJ|DNA-DIRECTED RNA polymerase subunit Rpo10|Pyrobaculum calidifontis (strain DSM

Query: 1 PLECCTSGDP 10
P+ C T G P
Sbjct: 4 PVRCFTCGKP 13


>sp|RPO10_PYRAR|DNA-DIRECTED RNA polymerase subunit Rpo10|Pyrobaculum arsenaticum (strain DSM

Query: 1 PLECCTSGDP 10
P+ C T G P
Sbjct: 4 PVRCFTCGKP 13


>sp|AROA_METTP|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanothrix thermoacetophila (strain DSM

Query: 3 ECCTSGD 9
E CT GD
Sbjct: 207 EICTDGD 213




45|SequenceR|230|221|GYKGSPLECC

>sp|DPO4_SULAC|DNA polymerase IV|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 YKGSPLECC 10
YKG PL C
Sbjct: 23 YKGKPLVVC 31


>sp|DPO4_SACSO|DNA polymerase IV|Saccharolobus solfataricus (Sulfolobus

Query: 2 YKGSPLECC 10
YKG PL C
Sbjct: 23 YKGKPLVVC 31


>sp|DPO4_SULTO|DNA polymerase IV|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 YKGSPLECC 10
YKG PL C
Sbjct: 23 YKGKPLIVC 31


>sp|DABA_NATPD|PROBABLE inorganic carbon transporter subunit|Natronomonas pharaonis

Query: 1 GYKGSPLE 8
G++GSP E
Sbjct: 40 GFEGSPFE 47


>sp|DTDA_METKA|D-AMINOACYL-TRNA deacylase|Methanopyrus kandleri (strain AV19 /

Query: 2 YKGSPLECC 10
+ G PLE C
Sbjct: 103 FGGKPLEVC 111


>sp|TYW1_PYRHO|S-ADENOSYL-L-METHIONINE-DEPENDENT tRNA 4-demethylwyosine synthase|Pyrococcus horikoshii (strain ATCC

Query: 1 GYKGSP 6
GYKG+P
Sbjct: 124 GYKGNP 129


>sp|TYW1_PYRAB|S-ADENOSYL-L-METHIONINE-DEPENDENT tRNA 4-demethylwyosine synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 GYKGSP 6
GYKG+P
Sbjct: 124 GYKGNP 129


>sp|Y785_METJA|UNCHARACTERIZED protein MJ0785|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YKGSPLE 8
YKG+P+E
Sbjct: 267 YKGTPME 273


>sp|PURL_HALLT|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 GYKGSPL 7
GY+G+PL
Sbjct: 176 GYEGNPL 182


>sp|DADD_METBF|5'-DEOXYADENOSINE deaminase|Methanosarcina barkeri (strain Fusaro /

Query: 2 YKGSPLEC 9
YKGS L C
Sbjct: 101 YKGSLLAC 108


>sp|DADD_METAC|5'-DEOXYADENOSINE deaminase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 YKGSPLEC 9
YKGS L C
Sbjct: 101 YKGSLLAC 108


>sp|Y912_METJA|UNCHARACTERIZED protein MJ0912|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GYKGSPLEC 9
GY +P EC
Sbjct: 42 GYGANPNEC 50


>sp|PURL_HALSA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Halobacterium salinarum (strain ATCC 700922

Query: 1 GYKGSPL 7
GY G+PL
Sbjct: 160 GYTGNPL 166


>sp|PURL_HALS3|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Halobacterium salinarum (strain ATCC 29341

Query: 1 GYKGSPL 7
GY G+PL
Sbjct: 160 GYTGNPL 166


>sp|NNR_THEPD|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Thermofilum pendens (strain DSM

Query: 2 YKGSPLEC 9
Y G+PL C
Sbjct: 256 YMGAPLLC 263


>sp|RL5_METHJ|LARGE ribosomal subunit protein uL5|Methanospirillum hungatei JF-1

Query: 3 KGSPLEC 9
KG+P+ C
Sbjct: 56 KGAPISC 62


>sp|ENDA_SULAC|TRNA-SPLICING endonuclease|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 GYKGSPLE 8
GY G PL+
Sbjct: 26 GYYGKPLD 33


>sp|ENDA_AERPE|TRNA-SPLICING endonuclease|Aeropyrum pernix (strain ATCC 700893

Query: 1 GYKGSPLE 8
GY G PL+
Sbjct: 34 GYYGQPLD 41


>sp|YNH2_METBA|UNCHARACTERIZED protein in nifH2 5'region|Methanosarcina barkeri

Query: 4 GSPLEC 9
GSP++C
Sbjct: 42 GSPIQC 47


>sp|NADA_METTH|QUINOLINATE synthase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 YKGSPLECC 10
+KG LE C
Sbjct: 36 FKGDSLELC 44


>sp|RNFC_METAC|ION-TRANSLOCATING oxidoreductase complex subunit C|Methanosarcina acetivorans (strain

Query: 1 GYKGSP 6
GYKG P
Sbjct: 320 GYKGEP 325




46|SequenceR|235|226|PMPCCGYKGS

>sp|PUR1_PYRHO|AMIDOPHOSPHORIBOSYLTRANSFERASE horikoshii (strain ATCC 700860

Query: 4 CCGYKGS 10
CCGYK S
Sbjct: 96 CCGYKVS 102


>sp|P936_METJA|PHOSPHODIESTERASE MJ0936|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PMPCCGY 7
P CCGY
Sbjct: 137 PGECCGY 143


>sp|Y448_METJA|UNCHARACTERIZED protein MJ0448|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PMPCCGYKG 9
PM C G+K
Sbjct: 227 PMHCTGFKA 235


>sp|GCSPB_THEAC|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermoplasma

Query: 1 PMPCCGYKG 9
P+P GY G
Sbjct: 295 PVPVVGYDG 303


>sp|CS3HD_PYRFU|CRISPR-ASSOCIATED endonuclease Cas3-HD|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PMPCCGYKGS 10
P+ C YKG+
Sbjct: 208 PLVLCDYKGA 217


>sp|CS3HD_METJA|CRISPR-ASSOCIATED endonuclease Cas3-HD|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PMPCCGYKGS 10
P+ C YKG+
Sbjct: 214 PLVMCDYKGA 223


>sp|NIFK_METTH|NITROGENASE molybdenum-iron protein beta chain|Methanothermobacter

Query: 2 MPCCGYKGS 10
+P GY+GS
Sbjct: 426 IPVVGYRGS 434


>sp|MTM7_METJA|PUTATIVE type II methyltransferase M.MjaORF1200P|Methanocaldococcus

Query: 3 PCCGYKGS 10
PC GY G+
Sbjct: 132 PCEGYTGA 139


>sp|HYPA_METS3|HYDROGENASE maturation factor HypA|Methanobrevibacter smithii (strain ATCC

Query: 3 PCCGYKG 9
P CG+KG
Sbjct: 74 PECGFKG 80


>sp|SYM_THEVO|METHIONINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 PCCGYK 8
P CGYK
Sbjct: 146 PYCGYK 151


>sp|LEUC1_ARCFU|3-ISOPROPYLMALATE dehydratase large subunit 1|Archaeoglobus fulgidus (strain ATCC

Query: 3 PCCG 6
PCCG
Sbjct: 356 PCCG 359


>sp|PUR1_PYRAB|AMIDOPHOSPHORIBOSYLTRANSFERASE abyssi (strain GE5 /

Query: 4 CCGYK 8
CCGY+
Sbjct: 96 CCGYE 100


>sp|KAE1B_METST|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 PMPCCGYKGS 10
PM CG GS
Sbjct: 280 PMKYCGDNGS 289


>sp|LEUC_METTH|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanothermobacter

Query: 3 PCCG 6
PCCG
Sbjct: 357 PCCG 360


>sp|HYPA_METBF|HYDROGENASE maturation factor HypA|Methanosarcina barkeri (strain Fusaro /

Query: 5 CGYKGS 10
CGYKG+
Sbjct: 75 CGYKGA 80


>sp|Y530_METJA|UNCHARACTERIZED ZPR1-like protein MJ0530|Methanocaldococcus jannaschii (strain

Query: 3 PCCGYKGS 10
P CG KG+
Sbjct: 10 PVCGGKGT 17


>sp|NIFD_METBA|NITROGENASE molybdenum-iron protein alpha chain|Methanosarcina barkeri

Query: 1 PMPCCGYKG 9
P C GY+G
Sbjct: 179 PARCEGYRG 187


>sp|HCGF_META3|IRON-GUANYLYLPYRIDINOL cofactor biosynthesis protein HcgF|Methanococcus aeolicus (strain

Query: 1 PMPCCGYKGS 10
P+P C Y+ S
Sbjct: 65 PLPKCDYEYS 74


>sp|LEUC_METAC|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina

Query: 3 PCCG 6
PCCG
Sbjct: 359 PCCG 362


>sp|EF1A_PICTO|ELONGATION factor 1-alpha|Picrophilus torridus (strain ATCC 700027

Query: 2 MPCCGYKG 9
+P GYKG
Sbjct: 184 IPLSGYKG 191


>sp|OTC_IGNH4|ORNITHINE carbamoyltransferase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 PCCGYKGS 10
PC G KG+
Sbjct: 217 PCKGVKGA 224


>sp|HYPA_META3|HYDROGENASE maturation factor HypA|Methanococcus aeolicus (strain ATCC

Query: 5 CGYKG 9
CGY+G
Sbjct: 80 CGYRG 84


>sp|PYRI_METHJ|ASPARTATE carbamoyltransferase regulatory chain|Methanospirillum hungatei

Query: 1 PMPCC 5
P PCC
Sbjct: 114 PNPCC 118


>sp|EF1A_THEVO|ELONGATION factor 1-alpha|Thermoplasma volcanium (strain ATCC 51530

Query: 2 MPCCGYKG 9
+P GYKG
Sbjct: 184 VPISGYKG 191


>sp|EF1A_THEAC|ELONGATION factor 1-alpha|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 MPCCGYKG 9
+P GYKG
Sbjct: 184 VPISGYKG 191


>sp|HYPA_METAR|HYDROGENASE maturation factor HypA|Methanocella arvoryzae (strain DSM 22066

Query: 5 CGYKG 9
CGYKG
Sbjct: 75 CGYKG 79


>sp|LEUC_METB6|3-ISOPROPYLMALATE dehydratase large subunit|Methanoregula boonei (strain DSM 21154

Query: 3 PCCG 6
PCCG
Sbjct: 355 PCCG 358


>sp|TRM1_METBF|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosarcina barkeri

Query: 3 PCCGYKG 9
P CG++G
Sbjct: 252 PKCGFRG 258


>sp|TBP_CENSY|TATA-BOX-BINDING protein|Cenarchaeum symbiosum (strain A)

Query: 2 MPCCGY 7
MPCC Y
Sbjct: 31 MPCCMY 36


>sp|Y1223_PYRHO|UNCHARACTERIZED ZPR1-like protein PH1223|Pyrococcus horikoshii (strain ATCC

Query: 3 PCCGYKGS 10
P CG KG+
Sbjct: 34 PICGGKGT 41




47|SequenceR|240|231|CCTANPMPCC

>sp|HEM1_METHJ|GLUTAMYL-TRNA reductase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 CCTANPMP 8
CCTA P P
Sbjct: 238 CCTAAPHP 245


>sp|SYE_METBU|GLUTAMATE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 CCTANP 6
CCT NP
Sbjct: 434 CCTVNP 439


>sp|TRPD_META3|ANTHRANILATE phosphoribosyltransferase|Methanococcus aeolicus (strain ATCC

Query: 4 ANPMPC 9
+NP+PC
Sbjct: 250 SNPIPC 255


>sp|LONB_METJA|ARCHAEAL Lon protease|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 NPMPC 9
NP+PC
Sbjct: 281 NPIPC 285


>sp|THIOL_METTL|ACETYL-COA acetyltransferase|Methanothermococcus thermolithotrophicus

Query: 5 NPMPC 9
NP+PC
Sbjct: 74 NPVPC 78


>sp|TRPB_HALSA|TRYPTOPHAN synthase beta chain|Halobacterium salinarum (strain ATCC 700922

Query: 2 CTANPMPC 9
C A MPC
Sbjct: 131 CAALEMPC 138


>sp|TRPB_HALS3|TRYPTOPHAN synthase beta chain|Halobacterium salinarum (strain ATCC 29341

Query: 2 CTANPMPC 9
C A MPC
Sbjct: 131 CAALEMPC 138


>sp|RIFK_CALMQ|RIBOFLAVIN kinase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 CTANPMPC 9
CT + +PC
Sbjct: 182 CTISDIPC 189




48|SequenceR|245|236|HLHDSCCTAN

>sp|PHP_SACS2|ARYLDIALKYLPHOSPHATASE solfataricus (strain ATCC 35092

Query: 3 HDSCCT 8
HD CCT
Sbjct: 255 HDYCCT 260


>sp|ACDA2_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus fulgidus

Query: 6 CCTAN 10
CCTAN
Sbjct: 273 CCTAN 277


>sp|PORB_METTM|PYRUVATE synthase subunit PorB|Methanothermobacter marburgensis (strain ATCC

Query: 1 HLHDSCCTA 9
HLH C T
Sbjct: 203 HLHQPCTTG 211


>sp|PORB_METTH|PYRUVATE synthase subunit PorB|Methanothermobacter thermautotrophicus

Query: 1 HLHDSCCTA 9
HLH C T
Sbjct: 203 HLHQPCTTG 211


>sp|Y1232_METJA|UNCHARACTERIZED protein MJ1232|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 HDSCCTA 9
H+ CC++
Sbjct: 108 HEKCCSS 114




49|SequenceR|250|241|DQPCCHLHDS

>sp|SYT_THEAC|THREONINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 PCCHLHD 9
P CH HD
Sbjct: 440 PVCHSHD 446


>sp|SFSA_SULTO|SUGAR fermentation stimulation protein homolog|Sulfurisphaera tokodaii

Query: 5 CHLHD 9
CHLHD
Sbjct: 31 CHLHD 35


>sp|SFSA_SULAC|SUGAR fermentation stimulation protein homolog|Sulfolobus

Query: 5 CHLHD 9
CHLHD
Sbjct: 37 CHLHD 41


>sp|Y1398_METJA|UNCHARACTERIZED HTH-type transcriptional regulator MJ1398|Methanocaldococcus

Query: 1 DQPCCHLHD 9
D P CHL +
Sbjct: 264 DNPGCHLRE 272


>sp|SYA_METKA|ALANINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 DQPCCHLHD 9
+QPC L+D
Sbjct: 122 NQPCIRLND 130


>sp|AMPD_METMA|ANHYDROMEVALONATE phosphate decarboxylase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 CCHLH 8
CC+LH
Sbjct: 313 CCYLH 317


>sp|SYA_METVS|ALANINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 124 QPCIRLND 131


>sp|SYA_METMP|ALANINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 124 QPCIRLND 131


>sp|SYA_METMJ|ALANINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 121 QPCIRLND 128


>sp|SYA_METMA|ALANINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 122 QPCIRLND 129


>sp|SYA_METM7|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 124 QPCIRLND 131


>sp|SYA_METM6|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 124 QPCIRLND 131


>sp|SYA_METM5|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 124 QPCIRLND 131


>sp|SYA_METLZ|ALANINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 121 QPCIRLND 128


>sp|SYA_METJA|ALANINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 122 QPCIRLND 129


>sp|SYA_METBF|ALANINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 122 QPCIRLND 129


>sp|SYA_METB6|ALANINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 121 QPCIRLND 128


>sp|SYA_METAC|ALANINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 122 QPCIRLND 129


>sp|SYA_META3|ALANINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 124 QPCIRLND 131


>sp|COPZ_ARCFU|COPPER chaperone CopZ|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 CCHLH 8
CCH H
Sbjct: 118 CCHWH 122


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 QPCCHLHD 9
QPC L+D
Sbjct: 121 QPCIRLND 128


>sp|DADD_METVS|5'-DEOXYADENOSINE deaminase|Methanococcus vannielii (strain ATCC 35089

Query: 4 CCHLHDS 10
C HL+DS
Sbjct: 244 CVHLNDS 250


>sp|Y155_ARCFU|UNCHARACTERIZED protein AF_0155|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PCCH 6
PCCH
Sbjct: 85 PCCH 88


>sp|G1PDH_METS3|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanobrevibacter smithii (strain ATCC

Query: 1 DQPCCH 6
D+PC H
Sbjct: 259 DKPCLH 264


>sp|SYT_THEVO|THREONINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 PCCHLHD 9
P CH H+
Sbjct: 440 PVCHSHN 446


>sp|Y1105_METKA|PUTATIVE nickel insertion protein|Methanopyrus kandleri (strain AV19 /

Query: 5 CHLHD 9
CHLH+
Sbjct: 115 CHLHE 119


>sp|GATD_METMP|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanococcus maripaludis (strain DSM

Query: 5 CHLHD 9
CHLH+
Sbjct: 227 CHLHE 231


>sp|GATD_METM7|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanococcus maripaludis (strain C7 /

Query: 5 CHLHD 9
CHLH+
Sbjct: 227 CHLHE 231


>sp|GATD_METM6|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanococcus maripaludis (strain C6 /

Query: 5 CHLHD 9
CHLH+
Sbjct: 227 CHLHE 231


>sp|GATD_METM5|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanococcus maripaludis (strain C5 /

Query: 5 CHLHD 9
CHLH+
Sbjct: 227 CHLHE 231


>sp|RAD50_SACS2|DNA double-strand break repair Rad50|Saccharolobus solfataricus (strain

Query: 1 DQPCCHLHD 9
D+P HL D
Sbjct: 804 DEPTIHLDD 812


>sp|PURA_METBU|ADENYLOSUCCINATE synthetase|Methanococcoides burtonii (strain DSM 6242

Query: 1 DQPCCHLHD 9
D+ HLHD
Sbjct: 283 DEAGAHLHD 291


>sp|SYFA_SULTO|PHENYLALANINE--TRNA ligase alpha subunit|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 DQPCCHLHDS 10
D P +HDS
Sbjct: 255 DHPAREIHDS 264


>sp|SYFA_SULAC|PHENYLALANINE--TRNA ligase alpha subunit|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 DQPCCHLHDS 10
D P +HDS
Sbjct: 255 DHPAREIHDS 264


>sp|SYFA_SACS2|PHENYLALANINE--TRNA ligase alpha subunit|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 DQPCCHLHDS 10
D P +HDS
Sbjct: 257 DHPAREIHDS 266


>sp|SYFA_METS5|PHENYLALANINE--TRNA ligase alpha subunit|Metallosphaera sedula (strain ATCC 51363

Query: 1 DQPCCHLHDS 10
D P +HDS
Sbjct: 257 DHPAREIHDS 266


>sp|SYFA_AERPE|PHENYLALANINE--TRNA ligase alpha subunit|Aeropyrum pernix (strain ATCC 700893

Query: 1 DQPCCHLHDS 10
D P +HDS
Sbjct: 275 DHPAREIHDS 284


>sp|END4_HALMA|PROBABLE endonuclease 4|Haloarcula marismortui (strain ATCC 43049

Query: 1 DQPCCHLHDS 10
D C HL+DS
Sbjct: 205 DLACVHLNDS 214


>sp|Y1289_HALVD|UNCHARACTERIZED protein HVO_1289|Haloferax volcanii (strain ATCC 29605

Query: 5 CHLHDS 10
CH+HD+
Sbjct: 111 CHVHDA 116


>sp|Y740_ARCFU|PUTATIVE uncharacterized protein AF_0740|Archaeoglobus fulgidus (strain ATCC

Query: 3 PCCHLHD 9
P HLHD
Sbjct: 155 PYSHLHD 161


>sp|SYM_METB6|METHIONINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 DQPCCH 6
D P CH
Sbjct: 97 DDPACH 102


>sp|Y1162_METJA|UNCHARACTERIZED protein MJ1162|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 CCHLHDS 10
C H+H+S
Sbjct: 175 CGHIHES 181




50|SequenceR|255|246|LDCVTDQPCC

>sp|HELS_METJA|ATP-DEPENDENT DNA helicase Hel308|Methanocaldococcus jannaschii (strain ATCC

Query: 1 LDCVTDQPCC 10
+DCV + CC
Sbjct: 235 VDCVKEGGCC 244


>sp|SYP_SACI7|PROLINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 LDCVTDQ 7
+ CVTDQ
Sbjct: 323 ITCVTDQ 329


>sp|SYP_SACI6|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 LDCVTDQ 7
+ CVTDQ
Sbjct: 323 ITCVTDQ 329


>sp|SYP_SACI4|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 LDCVTDQ 7
+ CVTDQ
Sbjct: 323 ITCVTDQ 329


>sp|SYP_SACI3|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 LDCVTDQ 7
+ CVTDQ
Sbjct: 323 ITCVTDQ 329


>sp|SYP_SACI2|PROLINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 LDCVTDQ 7
+ CVTDQ
Sbjct: 323 ITCVTDQ 329


>sp|SYP_SACI1|PROLINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 LDCVTDQ 7
+ CVTDQ
Sbjct: 323 ITCVTDQ 329


>sp|PYRI_CALMQ|ASPARTATE carbamoyltransferase regulatory chain|Caldivirga maquilingensis

Query: 3 CVTDQP 8
C+T+QP
Sbjct: 118 CITNQP 123


>sp|CMO_PYRFU|TUNGSTEN-CONTAINING aldehyde ferredoxin oxidoreductase cofactor-modifying|Pyrococcus

Query: 1 LDCVTDQPCC 10
+DC ++P C
Sbjct: 324 IDCWGNEPSC 333




51|SequenceR|260|251|CKSQILDCVT

>sp|GSA_SULTO|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 CKSQILDCV 9
CK LDCV
Sbjct: 175 CKYNDLDCV 183


>sp|EF2_CENSY|ELONGATION factor 2|Cenarchaeum symbiosum (strain A)

Query: 1 CKSQILDC 8
C+ Q+ DC
Sbjct: 573 CREQMRDC 580




52|SequenceR|265|256|NEKSLCKSQI

>sp|RFRNP_IGNH4|RNA-FREE ribonuclease P|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 EKSLCKSQI 10
E+S+C S+I
Sbjct: 62 ERSMCPSEI 70


>sp|CCA_METM7|CCA-ADDING enzyme|Methanococcus maripaludis (strain C7 /

Query: 1 NEKSLCK 7
NE++LCK
Sbjct: 258 NEENLCK 264




53|SequenceR|270|261|LDTTANEKSL

>sp|END4_METLZ|PROBABLE endonuclease 4|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 LDTTANEKS 9
L+ TANEK+
Sbjct: 143 LENTANEKN 151




54|SequenceR|275|266|PLKTLLDTTA

>sp|PHSG_THELN|MALTODEXTRIN phosphorylase|Thermococcus litoralis (strain ATCC 51850

Query: 1 PLKTLLDT 8
P+K LLDT
Sbjct: 52 PVKLLLDT 59


>sp|RS19E_AERPE|SMALL ribosomal subunit protein eS19|Aeropyrum pernix (strain ATCC 700893

Query: 3 KTLLDTTA 10
++LLDTTA
Sbjct: 128 RSLLDTTA 135




55|SequenceR|280|271|GVTHAPLKTL

>sp|LEUD_SULTO|3-ISOPROPYLMALATE dehydratase small subunit|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 GVTHAPLKTL 10
G+T PLK L
Sbjct: 139 GITGMPLKIL 148


>sp|BIOW_METVS|6-CARBOXYHEXANOATE--COA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 VTHAPLKTL 10
+ H P+KTL
Sbjct: 63 LKHIPIKTL 71


>sp|BIOW_METJA|6-CARBOXYHEXANOATE--COA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VTHAPLKTL 10
+ H P+KT+
Sbjct: 67 INHLPIKTI 75


>sp|IF2P_METAR|PROBABLE translation initiation factor IF-2|Methanocella arvoryzae (strain

Query: 1 GVTHAPLKTL 10
G T PL+T+
Sbjct: 51 GATEVPLQTI 60


>sp|BIOW_METSF|6-CARBOXYHEXANOATE--COA ligase|Methanocaldococcus sp. (strain FS406-22)

Query: 2 VTHAPLKTL 10
+ H P+KT+
Sbjct: 63 IDHLPIKTI 71




56|SequenceR|285|276|DCKVDGVTHA

>sp|SYE_NITMS|GLUTAMATE--TRNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 4 VDGVTHA 10
+DGVTHA
Sbjct: 289 IDGVTHA 295


>sp|SYE_CENSY|GLUTAMATE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 4 VDGVTHA 10
+DGVTHA
Sbjct: 283 IDGVTHA 289


>sp|CAS3_HALVD|CRISPR-ASSOCIATED nuclease/helicase Cas3|Haloferax volcanii (strain ATCC 29605

Query: 2 CKVDGVTH 9
C DGVTH
Sbjct: 590 CGHDGVTH 597


>sp|RTCA_PYRAB|RNA 3'-terminal phosphate cyclase|Pyrococcus abyssi (strain GE5 /

Query: 3 KVDGVTHA 10
KV+G++HA
Sbjct: 187 KVEGISHA 194


>sp|MRE11_METMA|DNA double-strand break repair protein|Methanosarcina mazei (strain

Query: 1 DCKVDGVTHA 10
D +VD V HA
Sbjct: 42 DMQVDAVVHA 51


>sp|MRE11_METAC|DNA double-strand break repair protein|Methanosarcina acetivorans

Query: 1 DCKVDGVTHA 10
D +VD V HA
Sbjct: 42 DMQVDAVVHA 51


>sp|AKSA_METKA|HOMOCITRATE synthase AksA|Methanopyrus kandleri (strain AV19 /

Query: 1 DCKVDGV 7
DC VDGV
Sbjct: 100 DCDVDGV 106


>sp|RTCA_PYRHO|RNA 3'-terminal phosphate cyclase|Pyrococcus horikoshii (strain ATCC

Query: 3 KVDGVTHA 10
K++G++HA
Sbjct: 187 KIEGISHA 194


>sp|THIE_METS3|THIAMINE-PHOSPHATE synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 DCKVDGVT 8
DC +DG++
Sbjct: 175 DCGIDGLS 182




57|SequenceR|290|281|CSVEMDCKVD

>sp|SYT_METAC|THREONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 SVEMDCKVD 10
S ++DC+VD
Sbjct: 539 SKKLDCRVD 547


>sp|SYT_METBF|THREONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 SVEMDCKVD 10
S ++DC+VD
Sbjct: 539 SQKLDCRVD 547


>sp|MUTS_METMA|DNA mismatch repair protein MutS|Methanosarcina mazei (strain ATCC

Query: 4 EMDCK 8
EMDCK
Sbjct: 624 EMDCK 628


>sp|MUTS_METBF|DNA mismatch repair protein MutS|Methanosarcina barkeri (strain Fusaro

Query: 4 EMDCK 8
EMDCK
Sbjct: 624 EMDCK 628


>sp|MUTS_METAC|DNA mismatch repair protein MutS|Methanosarcina acetivorans (strain

Query: 4 EMDCK 8
EMDCK
Sbjct: 624 EMDCK 628


>sp|AOCD_METKA|ORNITHINE cyclodeaminase|Methanopyrus kandleri (strain AV19 /

Query: 3 VEMDCKV 9
+EMDC +
Sbjct: 120 IEMDCAI 126


>sp|CAPPA_CALMQ|PHOSPHOENOLPYRUVATE carboxylase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 CSVEMD 6
CSVE+D
Sbjct: 155 CSVELD 160


>sp|AOCD_METTH|ORNITHINE cyclodeaminase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 VEMDCKV 9
+EMDC +
Sbjct: 118 IEMDCMI 124


>sp|Y2181_ARCFU|UNCHARACTERIZED protein AF_2181|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 CSVEMDCK 8
CS DCK
Sbjct: 194 CSFSEDCK 201




58|SequenceR|295|286|TYGDPCSVEM

>sp|RNJ_METJA|RIBONUCLEASE J|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YGDPCSVEM 10
YGDP S+EM
Sbjct: 294 YGDPSSIEM 302


>sp|HMED_ARCPA|HDR-LIKE menaquinol oxidoreductase iron-sulfur subunit|Archaeoglobus

Query: 1 TYGDPCSV 8
TY DPC+V
Sbjct: 416 TYHDPCNV 423


>sp|HMED_ARCFU|HDR-LIKE menaquinol oxidoreductase iron-sulfur subunit|Archaeoglobus

Query: 1 TYGDPCSV 8
TY DPC+V
Sbjct: 412 TYHDPCNV 419


>sp|PSA_METJA|PROTEASOME subunit alpha|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 TYGDPCSVEM 10
TYG+ S+EM
Sbjct: 103 TYGEEISIEM 112


>sp|GGGPS_METMJ|GERANYLGERANYLGLYCERYL phosphate synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 TYGDPCSVE 9
TYGDP V+
Sbjct: 167 TYGDPAIVQ 175


>sp|APEH_AERPE|ACYLAMINO-ACID-RELEASING enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 3 GDPCSVEM 10
GDPC E+
Sbjct: 413 GDPCGGEL 420


>sp|TRM1_METST|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosphaera stadtmanae

Query: 1 TYGDPC 6
TY DPC
Sbjct: 165 TYHDPC 170


>sp|CMR2_SACS2|CRISPR system CMR subunit Cmr2|Saccharolobus solfataricus (strain ATCC

Query: 3 GDPCSVE 9
GD CSVE
Sbjct: 536 GDLCSVE 542


>sp|Y092_METJA|UNCHARACTERIZED iron-sulfur protein MJ0092|Methanocaldococcus jannaschii (strain

Query: 1 TYGDPC 6
TY DPC
Sbjct: 378 TYHDPC 383


>sp|SEPS_METJA|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 PCSVEM 10
PCSVE+
Sbjct: 390 PCSVEV 395


>sp|HDRD_METBF|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina barkeri (strain

Query: 1 TYGDPC 6
TY DPC
Sbjct: 294 TYHDPC 299


>sp|HDRD_METTT|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina thermophila

Query: 1 TYGDPC 6
TY DPC
Sbjct: 294 TYHDPC 299


>sp|HYPA_METKA|HYDROGENASE maturation factor HypA|Methanopyrus kandleri (strain AV19 /

Query: 3 GDPCSVE 9
GD CS+E
Sbjct: 122 GDACSIE 128


>sp|HDRD_METAC|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina acetivorans

Query: 1 TYGDPC 6
TY DPC
Sbjct: 294 TYHDPC 299


>sp|HIS4_HALMA|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Haloarcula marismortui (strain

Query: 1 TYGDP 5
TYGDP
Sbjct: 31 TYGDP 35


>sp|Y1067_METMP|UNCHARACTERIZED iron-sulfur protein MMP1067|Methanococcus maripaludis (strain DSM

Query: 1 TYGDPC 6
TY DPC
Sbjct: 381 TYHDPC 386


>sp|HDRD_METMA|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina mazei (strain

Query: 1 TYGDPC 6
TY DPC
Sbjct: 294 TYHDPC 299


>sp|HIS4_HALSA|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Halobacterium salinarum (strain

Query: 1 TYGDP 5
TYGDP
Sbjct: 32 TYGDP 36


>sp|TFRB_METTM|FUMARATE reductase (CoM/CoB) subunit B|Methanothermobacter marburgensis

Query: 1 TYGDPCSV 8
TY DPC +
Sbjct: 378 TYHDPCHL 385


>sp|GAPOR_PYRFU|GLYCERALDEHYDE-3-PHOSPHATE:FERREDOXIN oxidoreductase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 TYGDPCSV 8
T G+PC V
Sbjct: 332 TCGEPCPV 339




59|SequenceR|300|291|QLRCCTYGDP

>sp|SYV_HALMA|VALINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 4 CCTYGD 9
CCT+GD
Sbjct: 305 CCTFGD 310


>sp|TOP1_AERPE|DNA topoisomerase 1|Aeropyrum pernix (strain ATCC 700893

Query: 2 LRCCTYGDP 10
LRC YG P
Sbjct: 23 LRCSEYGVP 31


>sp|COBS_METJA|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 LRCCTYGDP 10
L C T+G+P
Sbjct: 152 LSCSTFGNP 160


>sp|ACDG_METJA|ACETYL-COA decarbonylase/synthase complex subunit gamma|Methanocaldococcus

Query: 2 LRCCTYGDP 10
LR C Y DP
Sbjct: 337 LRQCIYTDP 345


>sp|PUR2_METKA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanopyrus kandleri (strain AV19 /

Query: 5 CTYGDP 10
C YGDP
Sbjct: 298 CRYGDP 303


>sp|SYV_THEKO|VALINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 5 CTYGD 9
CTYGD
Sbjct: 268 CTYGD 272


>sp|SYV_PYRHO|VALINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 CTYGD 9
CTYGD
Sbjct: 268 CTYGD 272


>sp|SYV_PYRFU|VALINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 5 CTYGD 9
CTYGD
Sbjct: 268 CTYGD 272


>sp|SYV_PYRAB|VALINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 5 CTYGD 9
CTYGD
Sbjct: 268 CTYGD 272


>sp|PUR1_PYRAB|AMIDOPHOSPHORIBOSYLTRANSFERASE abyssi (strain GE5 /

Query: 1 QLRCCTY 7
++RCC Y
Sbjct: 93 EVRCCGY 99


>sp|ACDG_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit gamma|Archaeoglobus fulgidus

Query: 5 CTYGDP 10
CT GDP
Sbjct: 145 CTSGDP 150


>sp|SYV_SULTO|VALINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 6 TYGDP 10
TYGDP
Sbjct: 286 TYGDP 290


>sp|SYV_SULAC|VALINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 6 TYGDP 10
TYGDP
Sbjct: 304 TYGDP 308


>sp|SYV_SACS2|VALINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 6 TYGDP 10
TYGDP
Sbjct: 312 TYGDP 316


>sp|HLY_NATA1|HALOLYSIN asiatica (strain ATCC 700177

Query: 6 TYGDP 10
TYGDP
Sbjct: 145 TYGDP 149


>sp|SYL_THEAC|LEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 RCCTY 7
RCCT+
Sbjct: 7 RCCTH 11


>sp|ARCH_METJA|PROTEIN archease|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 QLRCCTYGD 9
+L+C YG+
Sbjct: 93 RLKCTAYGE 101


>sp|PSA_PYRHO|PROTEASOME subunit alpha|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 QLRCCTYGDP 10
Q+ TYG+P
Sbjct: 99 QIHRLTYGEP 108


>sp|PSA_PYRAB|PROTEASOME subunit alpha|Pyrococcus abyssi (strain GE5 /

Query: 1 QLRCCTYGDP 10
Q+ TYG+P
Sbjct: 99 QIHRLTYGEP 108




60|SequenceR|305|296|GWAGSQLRCC

>sp|DPOL1_METTH|DNA polymerase PolB subunit 1|Methanothermobacter thermautotrophicus

Query: 1 GWAGSQLR 8
GW GS++R
Sbjct: 269 GWDGSKIR 276


>sp|MTHK_METTH|CALCIUM-GATED potassium channel MthK|Methanothermobacter thermautotrophicus

Query: 1 GWAGSQLRC 9
GW+ S L C
Sbjct: 122 GWSESTLEC 130


>sp|SYI_METTM|ISOLEUCINE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 1 GWAGSQLRC 9
GW SQL C
Sbjct: 557 GWFYSQLGC 565


>sp|SYI_METTH|ISOLEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 GWAGSQLRC 9
GW SQL C
Sbjct: 557 GWFYSQLGC 565


>sp|SYI_METKA|ISOLEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 GWAGSQLRC 9
GW SQL C
Sbjct: 594 GWFYSQLGC 602


>sp|PRIS_AERPE|DNA primase small subunit PriS|Aeropyrum pernix (strain ATCC 700893

Query: 1 GWAGSQL 7
GW GS+L
Sbjct: 88 GWLGSEL 94


>sp|RNP2_HALSA|RIBONUCLEASE P protein component 2|Halobacterium salinarum (strain ATCC 700922

Query: 1 GWAGSQLRCC 10
GW G++ R C
Sbjct: 150 GWVGARRRDC 159


>sp|RNP2_HALS3|RIBONUCLEASE P protein component 2|Halobacterium salinarum (strain ATCC 29341

Query: 1 GWAGSQLRCC 10
GW G++ R C
Sbjct: 150 GWVGARRRDC 159




61|SequenceR|310|301|TFPCCGWAGS

>sp|NDRZ_PYRFU|VITAMIN B12-dependent ribonucleoside-diphosphate reductase|Pyrococcus

Query: 1 TFPCCGWA 8
T P CGW+
Sbjct: 1728 TCPVCGWS 1735


>sp|PRIS_NATPD|DNA primase small subunit PriS|Natronomonas pharaonis (strain ATCC

Query: 1 TFPCCGWAG 9
T P GWAG
Sbjct: 207 TLPDGGWAG 215


>sp|SYFA_METBF|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina barkeri (strain Fusaro /

Query: 5 CGWAGS 10
CGW G+
Sbjct: 314 CGWGGA 319


>sp|SYFA_METMA|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 CGWAG 9
CGW G
Sbjct: 317 CGWGG 321


>sp|SYFA_METAC|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 CGWAG 9
CGW G
Sbjct: 314 CGWGG 318


>sp|LEUC_METTH|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanothermobacter

Query: 3 PCCG 6
PCCG
Sbjct: 357 PCCG 360


>sp|LEUC_METMA|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina mazei

Query: 3 PCCG 6
PCCG
Sbjct: 359 PCCG 362


>sp|LEUC_METAC|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina

Query: 3 PCCG 6
PCCG
Sbjct: 359 PCCG 362


>sp|LEUC1_ARCFU|3-ISOPROPYLMALATE dehydratase large subunit 1|Archaeoglobus fulgidus (strain ATCC

Query: 3 PCCG 6
PCCG
Sbjct: 356 PCCG 359


>sp|PUS10_KORCO|TRNA pseudouridine synthase Pus10|Korarchaeum cryptofilum (strain OPF8)

Query: 5 CGWAG 9
CGW G
Sbjct: 160 CGWKG 164


>sp|Y1353_ARCFU|UNCHARACTERIZED protein AF_1353|Archaeoglobus fulgidus (strain ATCC 49558

Query: 6 GWAGS 10
GWAGS
Sbjct: 129 GWAGS 133


>sp|SYP_HALMA|PROLINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 5 CGWAG 9
CGW G
Sbjct: 431 CGWCG 435


>sp|LEUC_METB6|3-ISOPROPYLMALATE dehydratase large subunit|Methanoregula boonei (strain DSM 21154

Query: 3 PCCG 6
PCCG
Sbjct: 355 PCCG 358


>sp|NIFK_METBA|NITROGENASE molybdenum-iron protein beta chain|Methanosarcina barkeri

Query: 2 FPCCGWAGS 10
FP G+AG+
Sbjct: 420 FPIMGYAGA 428


>sp|SYDND_AERPE|ASPARTATE--TRNA(ASP/ASN) ligase|Aeropyrum pernix (strain ATCC 700893

Query: 5 CGWA 8
CGWA
Sbjct: 25 CGWA 28


>sp|Y2167_ARCFU|UNCHARACTERIZED protein AF_2167|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PCCGWA 8
PC WA
Sbjct: 258 PCAAWA 263




62|SequenceR|315|306|CCVAQTFPCC

>sp|RN081_SACS2|CRISPR system ring nuclease SSO2081|Saccharolobus solfataricus (strain

Query: 1 CCVAQTFP 8
CC+ + FP
Sbjct: 55 CCIQEKFP 62




63|SequenceR|320|311|HIHDECCVAQ

>sp|Y1573_METJA|UNCHARACTERIZED protein MJ1573|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HIHDEC 6
H+H EC
Sbjct: 55 HLHKEC 60


>sp|Y531_METTH|UNCHARACTERIZED protein MTH_531|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 HIHDEC 6
H+H EC
Sbjct: 288 HLHPEC 293


>sp|CBID_SULAC|COBALT-PRECORRIN-5B C(1)-methyltransferase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 HIHDECCVAQ 10
HI E CV +
Sbjct: 190 HIKSEACVVK 199


>sp|PHP_SACS2|ARYLDIALKYLPHOSPHATASE solfataricus (strain ATCC 35092

Query: 3 HDECC 7
HD CC
Sbjct: 255 HDYCC 259




64|SequenceR|325|316|GAPCCHIHDE

>sp|SYT_THEAC|THREONINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 PCCHIHD 9
P CH HD
Sbjct: 440 PVCHSHD 446


>sp|Y096_PYRAR|PROTEIN Pars_0096|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 GAPCCHIH 8
GAP HIH
Sbjct: 221 GAPLLHIH 228


>sp|FLPA_METHJ|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanospirillum hungatei JF-1

Query: 2 APCCHIHDE 10
A CHIH E
Sbjct: 35 AALCHIHGE 43


>sp|SYDND_METLZ|ASPARTATE--TRNA(ASP/ASN) ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 GAPCCHIH 8
GA CHIH
Sbjct: 356 GAQRCHIH 363


>sp|SFSA_SULTO|SUGAR fermentation stimulation protein homolog|Sulfurisphaera tokodaii

Query: 5 CHIHD 9
CH+HD
Sbjct: 31 CHLHD 35


>sp|SFSA_SULAC|SUGAR fermentation stimulation protein homolog|Sulfolobus

Query: 5 CHIHD 9
CH+HD
Sbjct: 37 CHLHD 41


>sp|NIFE_METTH|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 1 GAPCCH 6
G PCC+
Sbjct: 46 GGPCCN 51


>sp|PGP_METBU|PHOSPHOGLYCOLATE phosphatase|Methanococcoides burtonii (strain DSM 6242

Query: 1 GAPCCHIH 8
G P C++H
Sbjct: 41 GNPLCYVH 48


>sp|Y1289_HALVD|UNCHARACTERIZED protein HVO_1289|Haloferax volcanii (strain ATCC 29605

Query: 5 CHIHD 9
CH+HD
Sbjct: 111 CHVHD 115


>sp|AKSA_METMA|HOMOCITRATE synthase AksA|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 APCCHIHDE 10
A C H HD+
Sbjct: 209 AICIHCHDD 217


>sp|SYT_THEVO|THREONINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 PCCHIHD 9
P CH H+
Sbjct: 440 PVCHSHN 446


>sp|SYR_NATPD|ARGININE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 APCCHIHDE 10
A CC I DE
Sbjct: 470 ARCCGILDE 478


>sp|SYR_HALLT|ARGININE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 APCCHIHDE 10
A CC I DE
Sbjct: 474 ARCCGILDE 482


>sp|GATD_METMP|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanococcus maripaludis (strain DSM

Query: 1 GAPCCHIHD 9
G CH+H+
Sbjct: 223 GDTVCHLHE 231


>sp|GATD_METM7|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanococcus maripaludis (strain C7 /

Query: 1 GAPCCHIHD 9
G CH+H+
Sbjct: 223 GDTVCHLHE 231


>sp|GATD_METM6|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanococcus maripaludis (strain C6 /

Query: 1 GAPCCHIHD 9
G CH+H+
Sbjct: 223 GDTVCHLHE 231


>sp|GATD_METM5|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanococcus maripaludis (strain C5 /

Query: 1 GAPCCHIHD 9
G CH+H+
Sbjct: 223 GDTVCHLHE 231


>sp|Y1094_METJA|UNCHARACTERIZED protein MJ1094|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 CHIHDE 10
CH+H E
Sbjct: 251 CHLHPE 256


>sp|SYDND_METBU|ASPARTATE--TRNA(ASP/ASN) ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 GAPCCHIHD 9
GA HIHD
Sbjct: 370 GAQRIHIHD 378


>sp|NIFD_METTH|NITROGENASE molybdenum-iron protein alpha chain|Methanothermobacter

Query: 1 GAPCCHIH 8
G PC IH
Sbjct: 424 GVPCVLIH 431


>sp|AMPD_METMA|ANHYDROMEVALONATE phosphate decarboxylase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 CCHIH 8
CC++H
Sbjct: 313 CCYLH 317


>sp|NIFD_METTM|NITROGENASE molybdenum-iron protein alpha chain|Methanothermobacter

Query: 1 GAPCCHIH 8
G PC IH
Sbjct: 424 GVPCILIH 431


>sp|AKSA_METAC|HOMOCITRATE synthase AksA|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 CCHIHDE 10
C H HD+
Sbjct: 211 CIHCHDD 217


>sp|COPZ_ARCFU|COPPER chaperone CopZ|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 CCHIHDE 10
CCH H E
Sbjct: 118 CCHWHLE 124




65|SequenceR|330|321|TDCTFGAPCC

>sp|TRPE3_HALMA|ANTHRANILATE synthase component 1 3|Haloarcula marismortui (strain ATCC 43049

Query: 2 DCTFGAPC 9
DCT PC
Sbjct: 107 DCTVPYPC 114


>sp|VORB_METTM|KETOISOVALERATE oxidoreductase subunit VorB|Methanothermobacter marburgensis

Query: 2 DCTFGAP 8
DC FG P
Sbjct: 22 DCYFGYP 28


>sp|VORB_METTH|KETOISOVALERATE oxidoreductase subunit VorB|Methanothermobacter

Query: 2 DCTFGAP 8
DC FG P
Sbjct: 22 DCYFGYP 28


>sp|CAS2A_ARCFU|CRISPR-ASSOCIATED endoribonuclease Cas2 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 DCTFGAPCC 10
DC F P C
Sbjct: 60 DCIFIIPLC 68


>sp|RGYR1_SULTO|REVERSE gyrase 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 TFGAPCC 10
TFG P C
Sbjct: 7 TFGCPNC 13


>sp|RPIA_HALSA|RIBOSE-5-PHOSPHATE isomerase A|Halobacterium salinarum (strain ATCC 700922

Query: 2 DCTFGA 7
DC FGA
Sbjct: 177 DCDFGA 182


>sp|RPIA_HALS3|RIBOSE-5-PHOSPHATE isomerase A|Halobacterium salinarum (strain ATCC 29341

Query: 2 DCTFGA 7
DC FGA
Sbjct: 177 DCDFGA 182




66|SequenceR|335|326|CTGKQTDCTF

>sp|TREZ_SACS2|MALTO-OLIGOSYLTREHALOSE trehalohydrolase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 TGKQTDCTF 10
T Q+DCTF
Sbjct: 455 TDPQSDCTF 463


>sp|ACDG2_METMA|ACETYL-COA decarbonylase/synthase complex subunit gamma|Methanosarcina mazei

Query: 2 TGKQTDC 8
+GK TDC
Sbjct: 37 SGKTTDC 43


>sp|ACDG1_METMA|ACETYL-COA decarbonylase/synthase complex subunit gamma|Methanosarcina mazei

Query: 2 TGKQTDC 8
+GK TDC
Sbjct: 37 SGKTTDC 43


>sp|TRM1_THEVO|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermoplasma volcanium

Query: 2 TGKQTDCTF 10
TG +TDC +
Sbjct: 321 TGIKTDCPY 329




67|SequenceR|340|331|HPGQECTGKQ

>sp|GLMS_THEKO|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Thermococcus kodakarensis (strain

Query: 1 HPGQECTGK 9
HP ++CTGK
Sbjct: 86 HPQKDCTGK 94


>sp|GLMS_PYRHO|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Pyrococcus horikoshii (strain ATCC

Query: 1 HPGQECTGK 9
HP +CTGK
Sbjct: 86 HPHTDCTGK 94


>sp|GLMS_PYRFU|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Pyrococcus furiosus (strain ATCC

Query: 1 HPGQECTGK 9
HP +CTGK
Sbjct: 86 HPHTDCTGK 94


>sp|GLMS_PYRAB|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Pyrococcus abyssi (strain GE5 /

Query: 1 HPGQECTGK 9
HP +CTGK
Sbjct: 86 HPHTDCTGK 94


>sp|GLMS_SULAC|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Sulfolobus acidocaldarius (strain

Query: 1 HPGQECTGK 9
HP +C+GK
Sbjct: 89 HPHVDCSGK 97


>sp|Y496_METJA|UNCHARACTERIZED protein MJ0496|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GQECTGKQ 10
G EC GKQ
Sbjct: 16 GVECDGKQ 23


>sp|GLMS_HALSA|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Halobacterium salinarum (strain

Query: 1 HPGQECTG 8
HP +CTG
Sbjct: 83 HPHTDCTG 90


>sp|RS3A_PICTO|SMALL ribosomal subunit protein eS1|Picrophilus torridus (strain ATCC

Query: 4 QECTGKQ 10
+ECTGK+
Sbjct: 71 KECTGKR 77


>sp|RNP2_METLZ|RIBONUCLEASE P protein component 2|Methanocorpusculum labreanum (strain ATCC

Query: 1 HPGQECTGKQ 10
+PG C GK+
Sbjct: 117 YPGYLCAGKK 126


>sp|GLMS_METTH|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Methanothermobacter

Query: 1 HPGQECTGK 9
HP +C+G+
Sbjct: 86 HPHTDCSGE 94


>sp|MCH_ARCFU|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 HPGQECTGKQ 10
HP C G Q
Sbjct: 84 HPAIACLGSQ 93


>sp|Y679_METMA|UPF0285 protein MM_0679|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 HPGQEC 6
H GQEC
Sbjct: 286 HLGQEC 291


>sp|Y208_METBF|UPF0285 protein Mbar_A0208|Methanosarcina barkeri (strain Fusaro /

Query: 1 HPGQEC 6
H GQEC
Sbjct: 286 HLGQEC 291


>sp|SYL_METTP|LEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 PGQECTGKQ 10
PG+E GK+
Sbjct: 276 PGEELIGKK 284


>sp|ADEC_METKA|ADENINE deaminase|Methanopyrus kandleri (strain AV19 /

Query: 2 PGQECTGKQ 10
PG C G++
Sbjct: 22 PGHRCAGER 30


>sp|PURA1_METAC|ADENYLOSUCCINATE synthetase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 PGQECTGK 9
PG ECT +
Sbjct: 375 PGWECTTR 382




68|SequenceR|345|336|MWPVQHPGQE

>sp|SLAB_METS5|S-LAYER protein B|Metallosphaera sedula (strain ATCC 51363

Query: 3 PVQHPGQ 9
PV HPGQ
Sbjct: 33 PVYHPGQ 39


>sp|SAV_SULAC|PROTEIN SAV|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 WPVQHP 7
WP++HP
Sbjct: 230 WPMRHP 235


>sp|BACR2_HALMA|BACTERIORHODOPSIN-II marismortui (strain ATCC 43049

Query: 2 WPVQHPGQE 10
W VQ P QE
Sbjct: 37 WDVQDPEQE 45


>sp|T2MT_METTF|TYPE II restriction enzyme MthTI|Methanothermobacter thermautotrophicus

Query: 1 MWPVQHP 7
MW ++HP
Sbjct: 202 MWIIKHP 208


>sp|SYFB_METKA|PHENYLALANINE--TRNA ligase beta subunit|Methanopyrus kandleri (strain AV19 /

Query: 3 PVQHPGQE 10
P+ HPG+E
Sbjct: 169 PLDHPGEE 176


>sp|Y1158_METJA|UNCHARACTERIZED protein MJ1158|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MWPVQHPG 8
MW +QH G
Sbjct: 1 MWGIQHFG 8


>sp|SYM_METAR|METHIONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 WPVQHPGQE 10
W V++PG E
Sbjct: 245 WGVKYPGHE 253


>sp|COOS_METKA|CARBON monoxide dehydrogenase|Methanopyrus kandleri (strain AV19 /

Query: 2 WPVQHP 7
WPVQ P
Sbjct: 39 WPVQFP 44


>sp|Y2170_ARCFU|KELCH domain-containing protein AF_2170|Archaeoglobus fulgidus (strain

Query: 3 PVQHPG 8
P++HPG
Sbjct: 174 PIEHPG 179


>sp|PUR1_METTH|AMIDOPHOSPHORIBOSYLTRANSFERASE thermautotrophicus (strain ATCC 29096

Query: 1 MWPVQHPGQE 10
++ +QH GQE
Sbjct: 33 LYALQHRGQE 42


>sp|RL3_METMP|LARGE ribosomal subunit protein uL3|Methanococcus maripaludis (strain DSM

Query: 1 MWPVQHPGQ 9
MW V PGQ
Sbjct: 243 MWTVPLPGQ 251


>sp|RL3_METM7|LARGE ribosomal subunit protein uL3|Methanococcus maripaludis (strain C7

Query: 1 MWPVQHPGQ 9
MW V PGQ
Sbjct: 243 MWTVPLPGQ 251


>sp|PUR1_ARCFU|AMIDOPHOSPHORIBOSYLTRANSFERASE fulgidus (strain ATCC 49558

Query: 2 WPVQHPGQE 10
+PV PG+E
Sbjct: 446 YPVSVPGEE 454


Query: 1 MWPVQHPGQE 10
++ +QH GQE
Sbjct: 23 LFSLQHRGQE 32


>sp|RL3_METM5|LARGE ribosomal subunit protein uL3|Methanococcus maripaludis (strain C5

Query: 1 MWPVQHPGQ 9
MW V PGQ
Sbjct: 243 MWTVPLPGQ 251


>sp|RL3_METM6|LARGE ribosomal subunit protein uL3|Methanococcus maripaludis (strain C6

Query: 1 MWPVQHPGQ 9
MW V PGQ
Sbjct: 243 MWTVPLPGQ 251


>sp|RL3_METJA|LARGE ribosomal subunit protein uL3|Methanocaldococcus jannaschii (strain

Query: 1 MWPVQHPGQ 9
MW V PGQ
Sbjct: 244 MWSVPMPGQ 252


>sp|PUR1_METJA|AMIDOPHOSPHORIBOSYLTRANSFERASE jannaschii (strain ATCC 43067

Query: 1 MWPVQHPGQE 10
++ +QH GQE
Sbjct: 23 LFALQHRGQE 32


>sp|Y1488_METJA|UNCHARACTERIZED protein MJ1488|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WPVQH 6
WPV H
Sbjct: 342 WPVNH 346


>sp|TRPD_HALSA|ANTHRANILATE phosphoribosyltransferase|Halobacterium salinarum (strain ATCC

Query: 3 PVQHPGQE 10
P HPG E
Sbjct: 151 PAFHPGME 158


>sp|TRPD_HALS3|ANTHRANILATE phosphoribosyltransferase|Halobacterium salinarum (strain ATCC

Query: 3 PVQHPGQE 10
P HPG E
Sbjct: 151 PAFHPGME 158


>sp|DCD_SULTO|DCTP deaminase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 PVQHPGQ 9
PV+HP Q
Sbjct: 150 PVEHPYQ 156


>sp|SYM_METMA|METHIONINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 WPVQHPGQE 10
W V+ PG E
Sbjct: 244 WGVKFPGHE 252


>sp|IF2P_PYRAB|PROBABLE translation initiation factor IF-2|Pyrococcus abyssi (strain GE5

Query: 1 MWPVQHPGQ 9
+W V+H G+
Sbjct: 81 VWKVRHKGK 89


>sp|SYM_METTP|METHIONINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 WPVQHPGQE 10
W V+ PG E
Sbjct: 238 WGVKFPGSE 246


>sp|SYM_METAC|METHIONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 WPVQHPGQE 10
W V+ PG E
Sbjct: 244 WGVRFPGHE 252


>sp|TRUA_THEKO|TRNA pseudouridine synthase A|Thermococcus kodakarensis (strain ATCC

Query: 1 MWPVQHPG 8
+W +++PG
Sbjct: 222 LWHIEYPG 229


>sp|SYM_METBU|METHIONINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 WPVQHPGQE 10
W ++ PG E
Sbjct: 240 WGIKFPGHE 248


>sp|SYFB_THEPD|PHENYLALANINE--TRNA ligase beta subunit|Thermofilum pendens (strain DSM 2475

Query: 3 PVQHPGQE 10
P HPG+E
Sbjct: 349 PPLHPGRE 356


>sp|LYSY_PYRIL|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 WPVQHP 7
WP HP
Sbjct: 115 WPQPHP 120


>sp|LYSY_PYRCJ|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 WPVQHP 7
WP HP
Sbjct: 115 WPQPHP 120


>sp|LYSY_CALMQ|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 WPVQHP 7
WP HP
Sbjct: 117 WPQPHP 122


>sp|LYSY_PYRNV|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 WPVQHP 7
WP HP
Sbjct: 115 WPQPHP 120


>sp|EF2_METKA|ELONGATION factor 2|Methanopyrus kandleri (strain AV19 /

Query: 1 MWPVQHPGQE 10
+W +H G E
Sbjct: 1212 IWTTEHAGYE 1221




69|SequenceR|350|341|APAKEMWPVQ

>sp|ENDA_HALVD|TRNA-SPLICING endonuclease|Haloferax volcanii (strain ATCC 29605

Query: 1 APAKEMWP 8
+PA+E WP
Sbjct: 86 SPAREGWP 93


>sp|PURL_SACI7|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 PAKEMWPVQ 10
P K +WP++
Sbjct: 354 PPKFLWPIK 362


>sp|PURL_SACI2|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 PAKEMWPVQ 10
P K +WP++
Sbjct: 354 PPKFLWPIK 362


>sp|PURL_SACI1|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 PAKEMWPVQ 10
P K +WP++
Sbjct: 354 PPKFLWPIK 362


>sp|PURL_SACI3|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain M.16.27)

Query: 2 PAKEMWPVQ 10
P K +WP++
Sbjct: 354 PPKFLWPIK 362


>sp|PURL_SACI6|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain M.16.4 /

Query: 2 PAKEMWPVQ 10
P K +WP++
Sbjct: 354 PPKFLWPIK 362


>sp|PURL_SACI4|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain M.14.25 /

Query: 2 PAKEMWPVQ 10
P K +WP++
Sbjct: 354 PPKFLWPIK 362


>sp|FER9_METJA|UNCHARACTERIZED ferredoxin MJ0265|Methanocaldococcus jannaschii (strain ATCC

Query: 1 APAKEMWPV 9
AP KE+ PV
Sbjct: 52 APCKEVCPV 60


>sp|GFCR_HALWD|TRANSCRIPTIONAL regulator GfcR|Haloquadratum walsbyi (strain DSM 16790

Query: 1 APAKEMW 7
APAK W
Sbjct: 123 APAKHQW 129


>sp|GFCR_HALLT|TRANSCRIPTIONAL regulator GfcR|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 APAKEMW 7
APAK W
Sbjct: 121 APAKHQW 127


>sp|FER8_METJA|UNCHARACTERIZED ferredoxin MJ0155|Methanocaldococcus jannaschii (strain ATCC

Query: 1 APAKEMWPV 9
AP KE+ PV
Sbjct: 48 APCKEICPV 56


>sp|SUCC_STAMF|SUCCINATE--COA ligase [ADP-forming] subunit beta|Staphylothermus marinus (strain

Query: 4 KEMWP 8
KE+WP
Sbjct: 163 KELWP 167


>sp|MSRA_METHJ|PEPTIDE methionine sulfoxide reductase MsrA|Methanospirillum hungatei JF-1

Query: 2 PAKEMWPVQ 10
PA+ WP +
Sbjct: 131 PAETFWPAE 139


>sp|SYA_NATPD|ALANINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 PAKEMWP 8
P K+ WP
Sbjct: 684 PVKQEWP 690


>sp|Y123_ARCFU|UNCHARACTERIZED protein AF_0123|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PAKEMWPV 9
PA E W V
Sbjct: 54 PASEFWKV 61


>sp|RNZ_PYRNV|RIBONUCLEASE Z|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 APAKEMW 7
AP EMW
Sbjct: 193 APCPEMW 199


>sp|RNZ_PYRAE|RIBONUCLEASE Z|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 APAKEMW 7
AP EMW
Sbjct: 193 APCPEMW 199




70|SequenceR|355|346|PLSLHAPAKE

>sp|PSB1_SACS9|PROTEASOME subunit beta 1|Saccharolobus solfataricus (strain 98/2)

Query: 1 PLSLHAPAK 9
P+S+HA AK
Sbjct: 77 PISVHAAAK 85


>sp|PSB1_SACS2|PROTEASOME subunit beta 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PLSLHAPAK 9
P+S+HA AK
Sbjct: 77 PISVHAAAK 85


>sp|PSB2_SACI9|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain L.D.8.5 /

Query: 1 PLSLHAPAK 9
P+S+HA AK
Sbjct: 77 PISVHAAAK 85


>sp|PSB2_SACI7|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 PLSLHAPAK 9
P+S+HA AK
Sbjct: 77 PISVHAAAK 85


>sp|PSB2_SACI6|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain M.16.4 /

Query: 1 PLSLHAPAK 9
P+S+HA AK
Sbjct: 77 PISVHAAAK 85


>sp|PSB2_SACI4|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain M.14.25 /

Query: 1 PLSLHAPAK 9
P+S+HA AK
Sbjct: 77 PISVHAAAK 85


>sp|PSB2_SACI3|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain M.16.27)

Query: 1 PLSLHAPAK 9
P+S+HA AK
Sbjct: 77 PISVHAAAK 85


>sp|PSB2_SACI2|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 PLSLHAPAK 9
P+S+HA AK
Sbjct: 77 PISVHAAAK 85


>sp|PSB1_SACI1|PROTEASOME subunit beta 1|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 PLSLHAPAK 9
P+S+HA AK
Sbjct: 77 PISVHAAAK 85


>sp|RL30_METS5|LARGE ribosomal subunit protein uL30|Metallosphaera sedula (strain ATCC

Query: 1 PLSLHAPAK 9
P+ LH P K
Sbjct: 114 PIRLHPPRK 122


>sp|PSB2_HALMA|PROTEASOME subunit beta 2|Haloarcula marismortui (strain ATCC 43049

Query: 1 PLSLHAPA 8
PLS+HA A
Sbjct: 109 PLSIHALA 116


>sp|TRMY_METTP|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanothrix

Query: 1 PLSLHA 6
PLSLHA
Sbjct: 173 PLSLHA 178


>sp|DPCKG_METHJ|GTP-DEPENDENT dephospho-CoA kinase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 PLSLHAP 7
PL++HAP
Sbjct: 118 PLAMHAP 124




71|SequenceR|360|351|LAQPDPLSLH

>sp|TRUA_METKA|TRNA pseudouridine synthase A|Methanopyrus kandleri (strain AV19 /

Query: 1 LAQPDPLS 8
LAQPDP++
Sbjct: 67 LAQPDPIN 74


>sp|TRUA_PICTO|TRNA pseudouridine synthase A|Picrophilus torridus (strain ATCC 700027

Query: 1 LAQPDPLSLH 10
LA+P+PL L+
Sbjct: 200 LAEPEPLILY 209


>sp|SYFB_METHJ|PHENYLALANINE--TRNA ligase beta subunit|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 QPDPLSLH 10
+PDP +LH
Sbjct: 393 EPDPKALH 400


>sp|PYRC_METKA|DIHYDROOROTASE kandleri (strain AV19 /

Query: 1 LAQPDPLSLH 10
LA P P+ LH
Sbjct: 52 LAVPAPIDLH 61




72|SequenceR|365|356|PVDRKLAQPD

>sp|TRI_SACS2|TRICORN protease homolog|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PVDRKLAQP 9
P DRK QP
Sbjct: 327 PTDRKKKQP 335


>sp|MTAD_PYRAB|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase|Pyrococcus abyssi (strain GE5 /

Query: 1 PVDRKLAQPD 10
PV+RKL + D
Sbjct: 90 PVERKLRRKD 99


>sp|Y638_METJA|UNCHARACTERIZED protein MJ0638|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PVDRKLAQ 8
PVD+KL++
Sbjct: 202 PVDKKLSK 209


>sp|ASSY_PYRAE|ARGININOSUCCINATE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PVDRKLAQP 9
P+D LA+P
Sbjct: 188 PIDDPLAEP 196


>sp|DPOL1_AERPE|DNA polymerase 1|Aeropyrum pernix (strain ATCC 700893

Query: 1 PVDRKLAQ 8
P+DRKL +
Sbjct: 203 PIDRKLVK 210




73|SequenceR|370|361|SVNDCPVDRK

>sp|PUR7_CENSY|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Cenarchaeum symbiosum (strain A)

Query: 1 SVNDCPVDRK 10
S +D PVDRK
Sbjct: 127 SEHDLPVDRK 136


>sp|ABLA_METMA|L-LYSINE 2,3-aminomutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 VNDCPV 7
VNDCPV
Sbjct: 266 VNDCPV 271


>sp|MFNA_METTP|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanothrix

Query: 4 DCPVDR 9
DCP DR
Sbjct: 25 DCPYDR 30


>sp|Y1344_THEON|UPF0200 protein TON_1344|Thermococcus onnurineus (strain NA1)

Query: 2 VNDCP 6
VNDCP
Sbjct: 162 VNDCP 166


>sp|TNAA_HALSA|PROBABLE tryptophanase|Halobacterium salinarum (strain ATCC 700922

Query: 4 DCPVD 8
DCPVD
Sbjct: 135 DCPVD 139


>sp|TNAA_HALS3|PROBABLE tryptophanase|Halobacterium salinarum (strain ATCC 29341

Query: 4 DCPVD 8
DCPVD
Sbjct: 135 DCPVD 139


>sp|AMPA_CENSY|PROBABLE cytosol aminopeptidase|Cenarchaeum symbiosum (strain A)

Query: 3 NDCPVDR 9
N+CP D+
Sbjct: 180 NECPPDK 186


>sp|PYRG_METHJ|CTP synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 VNDCPVDRK 10
+ DCPV+ K
Sbjct: 426 LGDCPVEIK 434


>sp|ABLA_METMP|L-LYSINE 2,3-aminomutase|Methanococcus maripaludis (strain DSM 14266

Query: 2 VNDCP 6
VNDCP
Sbjct: 276 VNDCP 280


>sp|VHUB_METJA|POLYFERREDOXIN protein VhuB|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VNDCPVD 8
VN CPVD
Sbjct: 247 VNICPVD 253




74|SequenceR|375|366|SSPCSSVNDC

>sp|KHSE_THEAC|HOMOSERINE kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 SSPCSSVN 8
S+PCSS N
Sbjct: 9 SAPCSSAN 16


>sp|Y1859_ARCFU|UNCHARACTERIZED protein AF_1859|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 CSSVNDC 10
C SV+DC
Sbjct: 52 CKSVDDC 58


>sp|CG121_PYRAB|KEOPS complex subunit Cgi121|Pyrococcus abyssi (strain GE5 /

Query: 1 SSPCSSVND 9
S PCSS+ D
Sbjct: 130 SDPCSSLKD 138


>sp|SYA_METMJ|ALANINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 SSPCSSVND 9
S PC +ND
Sbjct: 120 SQPCIRLND 128


>sp|SYA_METMA|ALANINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SSPCSSVND 9
S PC +ND
Sbjct: 121 SQPCIRLND 129


>sp|SYA_METLZ|ALANINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 SSPCSSVND 9
S PC +ND
Sbjct: 120 SQPCIRLND 128


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 SSPCSSVND 9
S PC +ND
Sbjct: 120 SQPCIRLND 128


>sp|SYA_METBF|ALANINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 SSPCSSVND 9
S PC +ND
Sbjct: 121 SQPCIRLND 129


>sp|SYA_METB6|ALANINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 SSPCSSVND 9
S PC +ND
Sbjct: 120 SQPCIRLND 128


>sp|SYA_METAC|ALANINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 SSPCSSVND 9
S PC +ND
Sbjct: 121 SQPCIRLND 129


>sp|PURP_METMP|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanococcus maripaludis (strain DSM

Query: 3 PCSSVND 9
PCSSV +
Sbjct: 168 PCSSVEE 174


>sp|Y578_METJA|UNCHARACTERIZED protein MJ0578|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 SSVNDC 10
SSVNDC
Sbjct: 197 SSVNDC 202




75|SequenceR|380|371|QCCTDSSPCS

>sp|IF5A_HALLT|TRANSLATION initiation factor 5A|Halorubrum lacusprofundi (strain ATCC 49239

Query: 5 DSSPC 9
DSSPC
Sbjct: 20 DSSPC 24


>sp|SIHH_METMP|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanococcus maripaludis (strain DSM 14266

Query: 3 CTDSSPC 9
C D PC
Sbjct: 340 CADGHPC 346


>sp|SIHH_METJA|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 CTDSSPC 9
C D PC
Sbjct: 340 CADGHPC 346




76|SequenceR|385|376|EGSTLQCCTD

>sp|SYA_CENSY|ALANINE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 1 EGSTLQCCTD 10
EGST++C D
Sbjct: 567 EGSTVRCIRD 576


>sp|Y1451_METJA|UNCHARACTERIZED protein MJ1451|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 TLQCCTD 10
TL CC D
Sbjct: 366 TLMCCLD 372


>sp|DAPF_METAR|DIAMINOPIMELATE epimerase|Methanocella arvoryzae (strain DSM 22066

Query: 1 EGSTLQCCT 9
EG TL C T
Sbjct: 214 EGETLSCGT 222


>sp|DAPF_ARCFU|DIAMINOPIMELATE epimerase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EGSTLQCCT 9
EG TL C T
Sbjct: 212 EGETLSCGT 220


>sp|RL14_METS3|LARGE ribosomal subunit protein uL14|Methanobrevibacter smithii (strain

Query: 2 GSTLQC 7
G+TLQC
Sbjct: 15 GATLQC 20


>sp|RL2_METBF|LARGE ribosomal subunit protein uL2|Methanosarcina barkeri (strain

Query: 2 GSTLQCCTD 10
GST++C D
Sbjct: 78 GSTIECGDD 86


>sp|AROA_METAR|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanocella arvoryzae (strain DSM 22066

Query: 5 LQCCTD 10
+QCC D
Sbjct: 218 IQCCQD 223




77|SequenceR|390|381|PCCGWEGSTL

>sp|MTHK_METTH|CALCIUM-GATED potassium channel MthK|Methanothermobacter thermautotrophicus

Query: 3 CGWEGSTL 10
CGW STL
Sbjct: 121 CGWSESTL 128


>sp|AAT_THEKO|ASPARTATE aminotransferase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 GWEGST 9
GWEGS+
Sbjct: 350 GWEGSS 355


>sp|NDRZ_PYRFU|VITAMIN B12-dependent ribonucleoside-diphosphate reductase|Pyrococcus

Query: 1 PCCGW 5
P CGW
Sbjct: 1730 PVCGW 1734


>sp|Y1527_METJA|UPF0132 membrane protein MJ1527|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PCCGWEGSTL 10
P GW STL
Sbjct: 91 PIIGWVASTL 100


>sp|PUS10_KORCO|TRNA pseudouridine synthase Pus10|Korarchaeum cryptofilum (strain OPF8)

Query: 3 CGWEG 7
CGW+G
Sbjct: 160 CGWKG 164


>sp|SYK_THEKO|LYSINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PCCGWEGST 9
P CG EG T
Sbjct: 200 PHCGAEGET 208


>sp|MTNA_METAC|PUTATIVE methylthioribose-1-phosphate isomerase|Methanosarcina acetivorans

Query: 4 GWEGS 8
GWEGS
Sbjct: 284 GWEGS 288


>sp|PUR1_PYRAB|AMIDOPHOSPHORIBOSYLTRANSFERASE abyssi (strain GE5 /

Query: 2 CCGWE 6
CCG+E
Sbjct: 96 CCGYE 100


>sp|RF1_THESM|PEPTIDE chain release factor subunit|Thermococcus sibiricus (strain DSM

Query: 3 CGWE 6
CGWE
Sbjct: 333 CGWE 336


>sp|RF1_THEON|PEPTIDE chain release factor subunit|Thermococcus onnurineus (strain NA1)

Query: 3 CGWE 6
CGWE
Sbjct: 333 CGWE 336


>sp|RF1_THEKO|PEPTIDE chain release factor subunit|Thermococcus kodakarensis (strain ATCC

Query: 3 CGWE 6
CGWE
Sbjct: 333 CGWE 336


>sp|RF1_PYRHO|PEPTIDE chain release factor subunit|Pyrococcus horikoshii (strain ATCC

Query: 3 CGWE 6
CGWE
Sbjct: 336 CGWE 339


>sp|RF1_PYRFU|PEPTIDE chain release factor subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 3 CGWE 6
CGWE
Sbjct: 336 CGWE 339


>sp|RF1_PYRAB|PEPTIDE chain release factor subunit|Pyrococcus abyssi (strain GE5 /

Query: 3 CGWE 6
CGWE
Sbjct: 333 CGWE 336


>sp|CARA_METAC|CARBAMOYL phosphate synthase small chain|Methanosarcina acetivorans (strain

Query: 3 CGWEGS 8
C W+GS
Sbjct: 172 CAWKGS 177


>sp|RS21_THEKO|SMALL ribosomal subunit protein aS21|Thermococcus kodakarensis (strain

Query: 1 PCCGWEG 7
P CGWEG
Sbjct: 55 PKCGWEG 61


>sp|RS21_PYRFU|SMALL ribosomal subunit protein aS21|Pyrococcus furiosus (strain ATCC

Query: 1 PCCGWEG 7
P CGWEG
Sbjct: 53 PNCGWEG 59


>sp|SYFA_METBF|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina barkeri (strain Fusaro /

Query: 3 CGWEGS 8
CGW G+
Sbjct: 314 CGWGGA 319


>sp|RS21_THECE|SMALL ribosomal subunit protein aS21|Thermococcus celer

Query: 1 PCCGWEG 7
P CGWEG
Sbjct: 52 PKCGWEG 58


>sp|AROC_METST|CHORISMATE synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 CGWEGSTL 10
CG E STL
Sbjct: 251 CGIESSTL 258


>sp|MOAA_AERPE|PROBABLE GTP 3',8-cyclase|Aeropyrum pernix (strain ATCC 700893

Query: 1 PCCGWEG 7
PC W+G
Sbjct: 268 PCIYWKG 274


>sp|SYFA_METMA|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 CGWEG 7
CGW G
Sbjct: 317 CGWGG 321


>sp|SYFA_METAC|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 CGWEG 7
CGW G
Sbjct: 314 CGWGG 318


>sp|DPOL1_METTH|DNA polymerase PolB subunit 1|Methanothermobacter thermautotrophicus

Query: 4 GWEGSTL 10
GW+GS +
Sbjct: 269 GWDGSKI 275




78|SequenceR|395|386|VAEPIPCCGW

>sp|THSA_SACSH|CHAPERONIN subunit alpha|Saccharolobus shibatae (strain ATCC 51178

Query: 1 VAEPIPCCGW 10
VAEP+P G+
Sbjct: 189 VAEPLPNGGY 198


>sp|THSA_SACS2|CHAPERONIN subunit alpha|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 VAEPIPCCGW 10
VAEP+P G+
Sbjct: 189 VAEPLPNGGY 198


>sp|MTBB3_METAC|DIMETHYLAMINE methyltransferase MtbB3|Methanosarcina acetivorans (strain ATCC

Query: 2 AEPIPC 7
A PIPC
Sbjct: 312 ASPIPC 317


>sp|MTBB2_METBF|DIMETHYLAMINE methyltransferase MtbB2|Methanosarcina barkeri (strain Fusaro /

Query: 2 AEPIPC 7
A PIPC
Sbjct: 312 ASPIPC 317


>sp|LONB_THEVO|ARCHAEAL Lon protease|Thermoplasma volcanium (strain ATCC 51530

Query: 3 EPIPC 7
EP+PC
Sbjct: 280 EPVPC 284


>sp|LONB_THEKO|ARCHAEAL Lon protease|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 EPIPC 7
EP+PC
Sbjct: 282 EPVPC 286


>sp|LONB_THEAC|ARCHAEAL Lon protease|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 EPIPC 7
EP+PC
Sbjct: 280 EPVPC 284


>sp|LONB_PYRHO|ARCHAEAL Lon protease|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 EPIPC 7
EP+PC
Sbjct: 751 EPVPC 755


>sp|LONB_PYRAB|ARCHAEAL Lon protease|Pyrococcus abyssi (strain GE5 /

Query: 3 EPIPC 7
EP+PC
Sbjct: 620 EPVPC 624


>sp|LONB_ARCFU|ARCHAEAL Lon protease|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 EPIPC 7
EP+PC
Sbjct: 270 EPVPC 274


>sp|MTBB3_METBA|DIMETHYLAMINE methyltransferase MtbB3|Methanosarcina barkeri

Query: 2 AEPIPC 7
A PIPC
Sbjct: 264 ASPIPC 269


>sp|MTBB1_METAC|DIMETHYLAMINE methyltransferase MtbB1|Methanosarcina acetivorans (strain ATCC

Query: 2 AEPIPC 7
A PIPC
Sbjct: 312 ASPIPC 317


>sp|MTBB1_METBA|DIMETHYLAMINE methyltransferase MtbB1|Methanosarcina barkeri

Query: 2 AEPIPC 7
A PIPC
Sbjct: 312 ASPIPC 317


>sp|THSA_SULTO|CHAPERONIN subunit alpha|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 VAEPIPCCGW 10
VAEP+P G+
Sbjct: 190 VAEPLPEGGY 199


>sp|APGM2_METTH|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanothermobacter thermautotrophicus

Query: 1 VAEPIPC 7
V +P+PC
Sbjct: 350 VPDPVPC 356


>sp|MTBB1_METBF|DIMETHYLAMINE methyltransferase MtbB1|Methanosarcina barkeri (strain Fusaro /

Query: 2 AEPIPC 7
A PIPC
Sbjct: 312 ASPIPC 317


>sp|AATE_NATPD|A-TYPE ATP synthase subunit E|Natronomonas pharaonis (strain ATCC 35678

Query: 1 VAEPIPCCG 9
V EP+ C G
Sbjct: 145 VGEPVDCLG 153


>sp|Y865_METJA|PUTATIVE methylthiotransferase MJ0865|Methanocaldococcus jannaschii (strain

Query: 1 VAEPIP 6
+AEPIP
Sbjct: 353 IAEPIP 358


>sp|LEUC1_ARCFU|3-ISOPROPYLMALATE dehydratase large subunit 1|Archaeoglobus fulgidus (strain ATCC

Query: 6 PCCG 9
PCCG
Sbjct: 356 PCCG 359


>sp|APGM2_ARCFU|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VAEPIP 6
VAEP+P
Sbjct: 336 VAEPVP 341


>sp|MTBB2_METBA|DIMETHYLAMINE methyltransferase MtbB2|Methanosarcina barkeri

Query: 2 AEPIPC 7
A PIPC
Sbjct: 264 ASPIPC 269


>sp|LEUC_METAC|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina

Query: 6 PCCG 9
PCCG
Sbjct: 359 PCCG 362


>sp|LEUC_METMA|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina mazei

Query: 6 PCCG 9
PCCG
Sbjct: 359 PCCG 362


>sp|LEUC_METB6|3-ISOPROPYLMALATE dehydratase large subunit|Methanoregula boonei (strain DSM 21154

Query: 6 PCCG 9
PCCG
Sbjct: 355 PCCG 358


>sp|LEUC_METTH|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanothermobacter

Query: 6 PCCG 9
PCCG
Sbjct: 357 PCCG 360


>sp|CDC6_METST|ORC1-TYPE DNA replication protein|Methanosphaera stadtmanae (strain ATCC

Query: 1 VAEPIPCCGW 10
+ +P+P GW
Sbjct: 112 LGKPVPYRGW 121


>sp|Y2663_HALWD|UPF0212 protein HQ_2663A|Haloquadratum walsbyi (strain DSM 16790

Query: 2 AEPIPCCG 9
A P P CG
Sbjct: 49 ATPCPACG 56


>sp|AATE_THEGJ|A-TYPE ATP synthase subunit E|Thermococcus gammatolerans (strain DSM 15229

Query: 1 VAEPIPCCG 9
+ EPI C G
Sbjct: 151 LGEPIECIG 159


>sp|GGR_METHJ|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 VAEPIPC 7
+ +P+PC
Sbjct: 263 ICQPLPC 269


>sp|SYV_ARCFU|VALINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 EPIPCCG 9
EP P CG
Sbjct: 430 EPCPKCG 436




79|SequenceR|400|391|HDSCCVAEPI

>sp|DP2S_METTH|DNA polymerase II small subunit|Methanothermobacter thermautotrophicus

Query: 1 HDSCCVAEP 9
HDS +AEP
Sbjct: 320 HDSSRIAEP 328


>sp|DP2L_METST|DNA polymerase II large subunit|Methanosphaera stadtmanae (strain ATCC

Query: 3 SCCVAEP 9
SCC A P
Sbjct: 852 SCCYAHP 858


>sp|PMDHL_THEKO|PHOSPHOMEVALONATE dehydratase large subunit|Thermococcus kodakarensis (strain ATCC

Query: 2 DSCCVAEPI 10
DSC V PI
Sbjct: 340 DSCFVVSPI 348


>sp|RIFK_PYRAB|RIBOFLAVIN kinase|Pyrococcus abyssi (strain GE5 /

Query: 2 DSCCVAEPI 10
D+ C A PI
Sbjct: 137 DALCTARPI 145


>sp|CARA_METTH|CARBAMOYL phosphate synthase small chain|Methanothermobacter

Query: 2 DSCCVAEPI 10
D CV EP+
Sbjct: 159 DMVCVREPV 167


>sp|LYSZ_NITMS|PUTATIVE [LysW]-aminoadipate/[LysW]-glutamate kinase|Nitrosopumilus

Query: 1 HDSCCVAE 8
HD+C V E
Sbjct: 258 HDNCTVIE 265


>sp|PHP_SACS2|ARYLDIALKYLPHOSPHATASE solfataricus (strain ATCC 35092

Query: 1 HDSCCVAE 8
HD CC +
Sbjct: 255 HDYCCTID 262


>sp|PMDHL_METJA|PHOSPHOMEVALONATE dehydratase large subunit|Methanocaldococcus jannaschii (strain

Query: 2 DSCCVAEPI 10
D+C V PI
Sbjct: 356 DTCMVVSPI 364


>sp|IDH_HALVD|ISOCITRATE dehydrogenase [NADP]|Haloferax volcanii (strain ATCC 29605

Query: 5 CVAEPI 10
C+AEP+
Sbjct: 332 CLAEPV 337




80|SequenceR|405|396|PCCHQHDSCC

>sp|SYT_THEAC|THREONINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PCCHQHD 7
P CH HD
Sbjct: 440 PVCHSHD 446


>sp|SYT_THEVO|THREONINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 PCCHQHD 7
P CH H+
Sbjct: 440 PVCHSHN 446


>sp|Y832_METJA|UNCHARACTERIZED protein MJ0832|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PCCHQHD 7
P C QHD
Sbjct: 240 PVCLQHD 246


>sp|PHP_SACS2|ARYLDIALKYLPHOSPHATASE solfataricus (strain ATCC 35092

Query: 6 HDSCC 10
HD CC
Sbjct: 255 HDYCC 259


>sp|GSA_HALLT|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 PCCHQHDSC 9
P C ++D+C
Sbjct: 377 PDCDRYDTC 385


>sp|SFSA_METS3|SUGAR fermentation stimulation protein homolog|Methanobrevibacter smithii

Query: 4 HQHDSCC 10
+Q D CC
Sbjct: 118 NQEDDCC 124


>sp|AGL10_HALVD|LOW-SALT glycan biosynthesis hexosyltransferase Agl10|Haloferax volcanii

Query: 1 PCCHQHDSC 9
P H H SC
Sbjct: 167 PVDHAHGSC 175


>sp|Y1162_METJA|UNCHARACTERIZED protein MJ1162|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CCHQHDSCC 10
C H H+S C
Sbjct: 175 CGHIHESRC 183


>sp|Y1289_HALVD|UNCHARACTERIZED protein HVO_1289|Haloferax volcanii (strain ATCC 29605

Query: 3 CHQHDS 8
CH HD+
Sbjct: 111 CHVHDA 116




81|SequenceR|410|401|CTYGQPCCHQ

>sp|Y155_ARCFU|UNCHARACTERIZED protein AF_0155|Archaeoglobus fulgidus (strain ATCC 49558

Query: 6 PCCH 9
PCCH
Sbjct: 85 PCCH 88


>sp|NIFE_METTH|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 4 GQPCCHQ 10
G PCC++
Sbjct: 46 GGPCCNK 52


>sp|Y1859_ARCFU|UNCHARACTERIZED protein AF_1859|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 CTYGQPCCH 9
C+Y +P C+
Sbjct: 42 CSYLKPSCN 50


>sp|Y1155_METJA|UPF0313 protein MJ1155|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CTYGQPC 7
C Y +PC
Sbjct: 368 CLYPEPC 374


>sp|TSR3_METTH|16S rRNA aminocarboxypropyltransferase|Methanothermobacter

Query: 3 YGQPC 7
YG+PC
Sbjct: 101 YGKPC 105


>sp|TSR3_METST|16S rRNA aminocarboxypropyltransferase|Methanosphaera stadtmanae

Query: 3 YGQPC 7
YG+PC
Sbjct: 102 YGKPC 106


>sp|TSR3_METKA|16S rRNA aminocarboxypropyltransferase|Methanopyrus kandleri (strain

Query: 3 YGQPC 7
YG+PC
Sbjct: 99 YGKPC 103


>sp|TSR3_METJA|16S rRNA aminocarboxypropyltransferase|Methanocaldococcus jannaschii

Query: 3 YGQPC 7
YG+PC
Sbjct: 104 YGKPC 108


>sp|TSR3_METS3|16S rRNA aminocarboxypropyltransferase|Methanobrevibacter smithii

Query: 3 YGQPC 7
YG+PC
Sbjct: 101 YGKPC 105


>sp|MSRA_METMP|PEPTIDE methionine sulfoxide reductase MsrA|Methanococcus maripaludis

Query: 2 TYGQPC 7
TYGQ C
Sbjct: 43 TYGQVC 48


>sp|MSRA_METM6|PEPTIDE methionine sulfoxide reductase MsrA|Methanococcus maripaludis

Query: 2 TYGQPC 7
TYGQ C
Sbjct: 43 TYGQVC 48


>sp|MSRA_METM5|PEPTIDE methionine sulfoxide reductase MsrA|Methanococcus maripaludis

Query: 2 TYGQPC 7
TYGQ C
Sbjct: 43 TYGQVC 48


>sp|Y189_METAR|UPF0313 protein UNCMA_01890|Methanocella arvoryzae (strain DSM 22066

Query: 1 CTYGQPC 7
C Y +PC
Sbjct: 370 CLYPEPC 376


>sp|MSRA_METM7|PEPTIDE methionine sulfoxide reductase MsrA|Methanococcus maripaludis

Query: 2 TYGQPC 7
TYGQ C
Sbjct: 43 TYGQVC 48




82|SequenceR|415|406|QGEAVCTYGQ

>sp|GLPK2_SULAC|GLYCEROL kinase 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 QGEAVCTYG 9
QG+ CTYG
Sbjct: 254 QGDVKCTYG 262


>sp|GLPK1_SULAC|GLYCEROL kinase 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 QGEAVCTYG 9
+G+ CTYG
Sbjct: 252 KGDVKCTYG 260


>sp|TBPD_HALSA|TATA-BOX-BINDING protein D|Halobacterium salinarum (strain ATCC 700922

Query: 2 GEAVCTYGQ 10
G+AVCT Q
Sbjct: 62 GKAVCTGAQ 70


>sp|SYV_THEVO|VALINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 GEAVCTYG 9
E VCT+G
Sbjct: 261 AEMVCTFG 268


>sp|SYV_THEAC|VALINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 GEAVCTYG 9
E VCT+G
Sbjct: 261 AEMVCTFG 268


>sp|FEN_METKA|FLAP endonuclease 1|Methanopyrus kandleri (strain AV19 /

Query: 1 QGEAVCTY 8
+GEA C Y
Sbjct: 149 EGEAQCAY 156


>sp|GVPD_HALMT|PROTEIN GvpD|Haloferax mediterranei (strain ATCC 33500

Query: 2 GEAVCTYGQ 10
GEA+ YG+
Sbjct: 511 GEAIMLYGE 519


>sp|PURL_HALWD|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Haloquadratum walsbyi (strain DSM 16790

Query: 2 GEAVCTYG 9
G VCT+G
Sbjct: 350 GNYVCTFG 357


>sp|SECG_METJA|PREPROTEIN translocase subunit SecG|Methanocaldococcus jannaschii (strain

Query: 3 EAVCTYGQ 10
EA+ TYG+
Sbjct: 44 EAILTYGR 51




83|SequenceR|420|411|SGRQCQGEAV

>sp|PANB_AERPE|3-METHYL-2-OXOBUTANOATE hydroxymethyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 1 SGRQCQGEAV 10
SGR+C G+ +
Sbjct: 206 SGRRCDGQII 215


>sp|HTPX_METTH|PROTEASE HtpX homolog|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 SGRQCQG 7
+GR CQG
Sbjct: 248 TGRGCQG 254


>sp|PANE_HALSA|2-DEHYDROPANTOATE 2-reductase|Halobacterium salinarum (strain ATCC 700922

Query: 2 GRQCQGEAV 10
GRQC G V
Sbjct: 90 GRQCDGAMV 98


>sp|DP2L_ARCFU|DNA polymerase II large subunit|Archaeoglobus fulgidus (strain ATCC

Query: 2 GRQCQG 7
GR+C+G
Sbjct: 692 GRECEG 697


>sp|GPMI2_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanosarcina acetivorans (strain ATCC

Query: 4 QCQGEAV 10
+C GEAV
Sbjct: 54 ECSGEAV 60




84|SequenceR|425|416|GAVIESGRQC

>sp|Y3522_METJA|UNCHARACTERIZED protein MJECL22|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 AVIESGRQC 10
AV+E GR+C
Sbjct: 14 AVLECGRRC 22


>sp|RL18_PICTO|LARGE ribosomal subunit protein uL18|Picrophilus torridus (strain ATCC

Query: 1 GAVIESGR 8
GAV+++GR
Sbjct: 95 GAVVDTGR 102


>sp|RL14E_METS5|LARGE ribosomal subunit protein eL14|Metallosphaera sedula (strain ATCC

Query: 2 AVIESGRQC 10
A+IE GR C
Sbjct: 2 AIIEVGRIC 10


>sp|THI4_HALVD|THIAMINE thiazole synthase|Haloferax volcanii (strain ATCC 29605

Query: 1 GAVIESGRQ 9
GA++ SGRQ
Sbjct: 273 GAMLLSGRQ 281




85|SequenceR|430|421|PMKELGAVIE

>sp|DHYS_SULTO|PROBABLE deoxyhypusine synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 PMKELGAVIE 10
PM+ G VIE
Sbjct: 131 PMESYGKVIE 140


>sp|Y959_METJA|UNCHARACTERIZED aminotransferase MJ0959|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PMKELGAVIE 10
P+KE+G V++
Sbjct: 150 PIKEIGEVVK 159


>sp|RS8_METS5|SMALL ribosomal subunit protein uS8|Metallosphaera sedula (strain ATCC

Query: 1 PMKELGAVI 9
P KE+G +I
Sbjct: 98 PSKEIGVII 106




86|SequenceR|435|426|SARRAPMKEL

>sp|SYFB_THEAC|PHENYLALANINE--TRNA ligase beta subunit|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 RAPMKEL 10
RAP+KEL
Sbjct: 5 RAPLKEL 11




87|SequenceR|440|431|RPHSLSARRA

>sp|PUS10_METV3|TRNA pseudouridine synthase Pus10|Methanococcus voltae (strain ATCC

Query: 2 PHSLSARRA 10
PH +S RRA
Sbjct: 436 PHRVSHRRA 444


>sp|SPEE_PYRAE|POLYAMINE aminopropyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 PHSLSA 7
PHSLSA
Sbjct: 249 PHSLSA 254


>sp|TRUD_THEVO|PROBABLE tRNA pseudouridine synthase D|Thermoplasma volcanium (strain ATCC

Query: 2 PHSLSARRA 10
PHSLS R+
Sbjct: 211 PHSLSFERS 219




88|SequenceR|445|436|DCGIDRPHSL

>sp|LEU1_METJA|2-ISOPROPYLMALATE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 DCGIDRPHSL 10
DCG+DR H+
Sbjct: 105 DCGVDRIHTF 114


>sp|RS5_METKA|SMALL ribosomal subunit protein uS5|Methanopyrus kandleri (strain AV19 /

Query: 1 DCGIDRPHSL 10
+CG RPHS+
Sbjct: 122 ECGCGRPHSI 131


>sp|GLMS_METMA|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Methanosarcina mazei (strain ATCC

Query: 1 DCGIDRPHSL 10
DC ID+P +L
Sbjct: 602 DCAIDKPRNL 611


>sp|RL18_KORCO|LARGE ribosomal subunit protein uL18|Korarchaeum cryptofilum (strain

Query: 1 DCGIDRPHS 9
D GID PHS
Sbjct: 125 DAGIDVPHS 133


>sp|RS5_HALMA|SMALL ribosomal subunit protein uS5|Haloarcula marismortui (strain ATCC

Query: 1 DCGIDRPHSL 10
+CG RPH++
Sbjct: 119 ECGCGRPHTV 128


>sp|RL18_METTP|LARGE ribosomal subunit protein uL18|Methanothrix thermoacetophila

Query: 1 DCGIDRPHS 9
D G+D PHS
Sbjct: 125 DAGVDVPHS 133


>sp|RS5_PICTO|SMALL ribosomal subunit protein uS5|Picrophilus torridus (strain ATCC

Query: 1 DCGIDRPHSL 10
+CG +PH+L
Sbjct: 117 ECGCGKPHTL 126


>sp|RL19E_METVA|LARGE ribosomal subunit protein eL19|Methanococcus vannielii

Query: 1 DCGIDR 6
DCGIDR
Sbjct: 15 DCGIDR 20


>sp|G1PDH_HYPBU|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Hyperthermus butylicus (strain DSM 5456

Query: 3 GIDRPHSL 10
G+D+PHS+
Sbjct: 133 GLDKPHSV 140


>sp|RS5_METHJ|SMALL ribosomal subunit protein uS5|Methanospirillum hungatei JF-1

Query: 1 DCGIDRPHSL 10
+CG PHS+
Sbjct: 120 ECGCSNPHSI 129


>sp|RS5_HALSA|SMALL ribosomal subunit protein uS5|Halobacterium salinarum (strain ATCC

Query: 1 DCGIDRPHSL 10
+CG RPH++
Sbjct: 119 ECGCGRPHTV 128


>sp|RL18_META3|LARGE ribosomal subunit protein uL18|Methanococcus aeolicus (strain ATCC

Query: 1 DCGIDRPHS 9
D G+D PHS
Sbjct: 125 DAGMDIPHS 133


>sp|GLMS_METAC|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Methanosarcina acetivorans (strain

Query: 1 DCGIDRPHSL 10
+C ID+P +L
Sbjct: 602 NCSIDKPRNL 611


>sp|RS5_METVS|SMALL ribosomal subunit protein uS5|Methanococcus vannielii (strain ATCC

Query: 1 DCGIDRPHSL 10
+CG PHS+
Sbjct: 128 ECGCGSPHSI 137


>sp|RS5_METVA|SMALL ribosomal subunit protein uS5|Methanococcus vannielii

Query: 1 DCGIDRPHSL 10
+CG PHS+
Sbjct: 128 ECGCGSPHSI 137


>sp|RS5_METMP|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain DSM

Query: 1 DCGIDRPHSL 10
+CG PHS+
Sbjct: 128 ECGCGSPHSI 137


>sp|RS5_METM6|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain C6

Query: 1 DCGIDRPHSL 10
+CG PHS+
Sbjct: 132 ECGCGSPHSI 141


>sp|RS5_METM5|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain C5

Query: 1 DCGIDRPHSL 10
+CG PHS+
Sbjct: 132 ECGCGSPHSI 141


>sp|HIS4_METHJ|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanospirillum hungatei JF-1

Query: 1 DCGIDR 6
DCG+DR
Sbjct: 93 DCGVDR 98


>sp|APE1_SACS2|PROBABLE aminopeptidase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 CGIDRPHSL 10
CG+D+P +
Sbjct: 742 CGVDKPKDI 750


>sp|RS5_PYRIL|SMALL ribosomal subunit protein uS5|Pyrobaculum islandicum (strain DSM

Query: 2 CGIDRPHSL 10
C D PHS+
Sbjct: 122 CSCDEPHSV 130


>sp|RS5_PYRCJ|SMALL ribosomal subunit protein uS5|Pyrobaculum calidifontis (strain DSM

Query: 2 CGIDRPHSL 10
C D PHS+
Sbjct: 122 CSCDEPHSV 130


>sp|RS5_PYRAR|SMALL ribosomal subunit protein uS5|Pyrobaculum arsenaticum (strain DSM

Query: 2 CGIDRPHSL 10
C D PHS+
Sbjct: 122 CSCDEPHSV 130


>sp|RS5_PYRAE|SMALL ribosomal subunit protein uS5|Pyrobaculum aerophilum (strain ATCC

Query: 2 CGIDRPHSL 10
C D PHS+
Sbjct: 138 CSCDEPHSV 146


>sp|RS5_METJA|SMALL ribosomal subunit protein uS5|Methanocaldococcus jannaschii (strain

Query: 1 DCGIDRPHSL 10
+CG PHS+
Sbjct: 120 ECGCGTPHSI 129


>sp|MTRH_METTM|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit H|Methanothermobacter marburgensis

Query: 1 DCGIDR 6
DCGID+
Sbjct: 186 DCGIDK 191


>sp|RS5_METM7|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain C7

Query: 1 DCGIDRPHSL 10
+CG PHS+
Sbjct: 132 ECGCGYPHSI 141


>sp|COOS2_METMA|CARBON monoxide dehydrogenase 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 GIDRPHSL 10
GI RPH++
Sbjct: 238 GIPRPHTM 245


>sp|TH11_HALSA|PROBABLE transposase for insertion sequence|Halobacterium salinarum

Query: 2 CGIDRPHS 9
CG DRP S
Sbjct: 88 CGFDRPPS 95


Query: 1 DCGIDRPHS 9
DCG+ R H+
Sbjct: 284 DCGLGRTHA 292


>sp|TH11_HALS3|PROBABLE transposase for insertion sequence|Halobacterium salinarum

Query: 2 CGIDRPHS 9
CG DRP S
Sbjct: 88 CGFDRPPS 95


Query: 1 DCGIDRPHS 9
DCG+ R H+
Sbjct: 284 DCGLGRTHA 292


>sp|AKSA_METKA|HOMOCITRATE synthase AksA|Methanopyrus kandleri (strain AV19 /

Query: 1 DCGIDRPHS 9
+CG DR H+
Sbjct: 170 ECGADRVHA 178


>sp|THII_AERPE|PROBABLE tRNA sulfurtransferase|Aeropyrum pernix (strain ATCC 700893

Query: 2 CGIDRP 7
CG+D+P
Sbjct: 345 CGVDQP 350


>sp|RL18_AERPE|LARGE ribosomal subunit protein uL18|Aeropyrum pernix (strain ATCC 700893

Query: 1 DCGIDRPHS 9
D G++ PHS
Sbjct: 126 DAGVEIPHS 134


>sp|RL18_METBU|LARGE ribosomal subunit protein uL18|Methanococcoides burtonii (strain

Query: 1 DCGIDRPHS 9
D G+D PH+
Sbjct: 125 DSGLDVPHN 133


>sp|RL18_THEVO|LARGE ribosomal subunit protein uL18|Thermoplasma volcanium (strain ATCC

Query: 1 DCGIDRPH 8
D G+D PH
Sbjct: 117 DSGVDIPH 124


>sp|RS5_THEVO|SMALL ribosomal subunit protein uS5|Thermoplasma volcanium (strain ATCC

Query: 1 DCGIDRPHSL 10
+CG R H+L
Sbjct: 117 ECGCGRAHTL 126


>sp|RS5_THEAC|SMALL ribosomal subunit protein uS5|Thermoplasma acidophilum (strain ATCC

Query: 1 DCGIDRPHSL 10
+CG R H+L
Sbjct: 117 ECGCGRAHTL 126


>sp|RL3_METAR|LARGE ribosomal subunit protein uL3|Methanocella arvoryzae (strain DSM

Query: 5 DRPHS 9
DRPHS
Sbjct: 57 DRPHS 61


>sp|RL18_THESM|LARGE ribosomal subunit protein uL18|Thermococcus sibiricus (strain DSM

Query: 1 DCGIDRPHS 9
D G++ PHS
Sbjct: 126 DAGLNVPHS 134


>sp|RL18_THEKO|LARGE ribosomal subunit protein uL18|Thermococcus kodakarensis (strain

Query: 1 DCGIDRPHS 9
D G++ PHS
Sbjct: 126 DAGLNVPHS 134


>sp|RL18_THEGJ|LARGE ribosomal subunit protein uL18|Thermococcus gammatolerans (strain

Query: 1 DCGIDRPHS 9
D G++ PHS
Sbjct: 126 DAGLNVPHS 134


>sp|RL18_THEON|LARGE ribosomal subunit protein uL18|Thermococcus onnurineus (strain NA1)

Query: 1 DCGIDRPHS 9
D G++ PHS
Sbjct: 126 DAGLNVPHS 134


>sp|HIS1_IGNH4|ATP phosphoribosyltransferase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 DCGIDRPHSL 10
D GI RP L
Sbjct: 99 DSGIKRPEEL 108


>sp|RL18_HYPBU|LARGE ribosomal subunit protein uL18|Hyperthermus butylicus (strain DSM

Query: 1 DCGIDRPHS 9
D G++ PHS
Sbjct: 126 DAGLEIPHS 134


>sp|RL18_METMP|LARGE ribosomal subunit protein uL18|Methanococcus maripaludis (strain

Query: 1 DCGIDRPH 8
D G+D PH
Sbjct: 125 DAGMDIPH 132


>sp|RL18_METM7|LARGE ribosomal subunit protein uL18|Methanococcus maripaludis (strain C7

Query: 1 DCGIDRPH 8
D G+D PH
Sbjct: 125 DAGMDIPH 132


>sp|RL18_METM6|LARGE ribosomal subunit protein uL18|Methanococcus maripaludis (strain C6

Query: 1 DCGIDRPH 8
D G+D PH
Sbjct: 125 DAGMDIPH 132


>sp|RL18_METM5|LARGE ribosomal subunit protein uL18|Methanococcus maripaludis (strain C5

Query: 1 DCGIDRPH 8
D G+D PH
Sbjct: 125 DAGMDIPH 132


>sp|RL18_NANEQ|LARGE ribosomal subunit protein uL18|Nanoarchaeum equitans (strain

Query: 1 DCGIDRPHS 9
D G++ PHS
Sbjct: 125 DAGLNIPHS 133


>sp|RL18_HALSA|LARGE ribosomal subunit protein uL18|Halobacterium salinarum (strain ATCC

Query: 1 DCGIDRPHS 9
D G+D PH+
Sbjct: 125 DAGLDVPHN 133


>sp|RL18_HALS3|LARGE ribosomal subunit protein uL18|Halobacterium salinarum (strain ATCC

Query: 1 DCGIDRPHS 9
D G+D PH+
Sbjct: 125 DAGLDVPHN 133


>sp|RL18_PYRFU|LARGE ribosomal subunit protein uL18|Pyrococcus furiosus (strain ATCC

Query: 1 DCGIDRPHS 9
D G++ PHS
Sbjct: 126 DAGLNVPHS 134


>sp|TRPD_IGNH4|ANTHRANILATE phosphoribosyltransferase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 CGIDRPHSL 10
CG +RP L
Sbjct: 47 CGRERPEEL 55


>sp|TRPF_METKA|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanopyrus kandleri (strain AV19 /

Query: 2 CGIDRP 7
CGI RP
Sbjct: 7 CGITRP 12


>sp|RL18_PYRAB|LARGE ribosomal subunit protein uL18|Pyrococcus abyssi (strain GE5 /

Query: 1 DCGIDRPHS 9
D G++ PHS
Sbjct: 126 DAGLNVPHS 134


>sp|RL18_THEAC|LARGE ribosomal subunit protein uL18|Thermoplasma acidophilum (strain

Query: 1 DCGIDRPH 8
D GI+ PH
Sbjct: 120 DAGIEVPH 127


>sp|RL18_PYRHO|LARGE ribosomal subunit protein uL18|Pyrococcus horikoshii (strain ATCC

Query: 1 DCGIDRPHS 9
D G++ PHS
Sbjct: 126 DAGLNVPHS 134


>sp|RL18_METKA|LARGE ribosomal subunit protein uL18|Methanopyrus kandleri (strain AV19 /

Query: 1 DCGIDRPH 8
D G+D PH
Sbjct: 129 DAGMDIPH 136


>sp|RL18_HALMA|LARGE ribosomal subunit protein uL18|Haloarcula marismortui (strain ATCC

Query: 1 DCGIDRPHS 9
D G+D PH+
Sbjct: 125 DAGLDIPHN 133


>sp|SYFB_METHJ|PHENYLALANINE--TRNA ligase beta subunit|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 CGIDR 6
CGIDR
Sbjct: 15 CGIDR 19


>sp|RS5_METBU|SMALL ribosomal subunit protein uS5|Methanococcoides burtonii (strain DSM

Query: 1 DCGIDRPHSL 10
+CG PH++
Sbjct: 121 ECGCGLPHTV 130


>sp|TRPF_METTH|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 CGIDRPH 8
CGI RP
Sbjct: 16 CGIKRPE 22


>sp|PYRG_NATPD|CTP synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 CGIDRPHS 9
CG+D HS
Sbjct: 405 CGLDGAHS 412


>sp|TRPE2_HALMA|ANTHRANILATE synthase component 1 2|Haloarcula marismortui (strain ATCC 43049

Query: 1 DCGIDRPHS 9
+ G+DRP S
Sbjct: 165 EVGLDRPDS 173


>sp|GPMI_HALMA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Haloarcula marismortui (strain ATCC 43049

Query: 3 GIDRPHSL 10
GIDRP ++
Sbjct: 505 GIDRPDAM 512


>sp|Y1448_METMA|UPF0251 protein MM_1448|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 CGIDRPHS 9
CG + PH+
Sbjct: 137 CGYETPHT 144


>sp|RS5_METMJ|SMALL ribosomal subunit protein uS5|Methanoculleus marisnigri (strain

Query: 1 DCGIDRPHSL 10
+CG + HS+
Sbjct: 120 ECGCETAHSI 129


>sp|Y157_METAC|UPF0251 protein MA_0157|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 CGIDRPHS 9
CG + PH+
Sbjct: 137 CGYETPHT 144




89|SequenceR|450|441|CSTHQDCGID

>sp|CS2H_SACS2|CARBON disulfide hydrolase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 THQDCGI 9
TH DCG+
Sbjct: 87 THTDCGM 93


>sp|CS2H_ACIS1|CARBON disulfide hydrolase|Acidianus sp. (strain A1-3)

Query: 3 THQDCGI 9
TH DCG+
Sbjct: 87 THTDCGM 93


>sp|MCH_METHJ|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 5 QDCGID 10
+DCGID
Sbjct: 155 KDCGID 160


>sp|HMPTM_METJA|7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN dimethyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 STHQDCG 8
S+HQ CG
Sbjct: 333 SSHQHCG 339


>sp|THIE_METS3|THIAMINE-PHOSPHATE synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 6 DCGID 10
DCGID
Sbjct: 175 DCGID 179


>sp|RL19E_METVA|LARGE ribosomal subunit protein eL19|Methanococcus vannielii

Query: 6 DCGID 10
DCGID
Sbjct: 15 DCGID 19


>sp|MTRH_METTM|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit H|Methanothermobacter marburgensis

Query: 6 DCGID 10
DCGID
Sbjct: 186 DCGID 190


>sp|METE_SULAC|METHIONINE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 HQDCGID 10
HQ+ GID
Sbjct: 54 HQEAGID 60


>sp|XDH2_HALVD|D-XYLOSE 1-dehydrogenase (NADP(+)) 2|Haloferax volcanii (strain ATCC 29605

Query: 5 QDCGID 10
+DCG+D
Sbjct: 200 RDCGVD 205


>sp|DUT_METJA|DEOXYURIDINE 5'-triphosphate nucleotidohydrolase|Methanocaldococcus jannaschii

Query: 5 QDCGID 10
Q CGID
Sbjct: 21 QQCGID 26


>sp|Y1959_METB6|UPF0179 protein Mboo_1959|Methanoregula boonei (strain DSM 21154

Query: 2 STHQDCGI 9
STH DC +
Sbjct: 56 STHHDCAV 63


>sp|TOP1_METTH|DNA topoisomerase 1|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 CSTHQDC 7
CS++ DC
Sbjct: 620 CSSYPDC 626


>sp|LEU1_METTH|PROBABLE 2-isopropylmalate synthase|Methanothermobacter thermautotrophicus

Query: 6 DCGID 10
DCG+D
Sbjct: 97 DCGVD 101


>sp|LEU1_METJA|2-ISOPROPYLMALATE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 6 DCGID 10
DCG+D
Sbjct: 105 DCGVD 109


>sp|VHTG_METMA|F420 non-reducing hydrogenase II small|Methanosarcina mazei (strain ATCC

Query: 4 HQDCGI 9
H DCGI
Sbjct: 308 HADCGI 313


>sp|DPCKG_AERPE|GTP-DEPENDENT dephospho-CoA kinase|Aeropyrum pernix (strain ATCC 700893

Query: 6 DCGID 10
DCGID
Sbjct: 137 DCGID 141


>sp|COFG_HALMA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Haloarcula marismortui (strain ATCC 43049

Query: 6 DCGID 10
DCGID
Sbjct: 281 DCGID 285


>sp|HOSA_SULTO|HOMOCITRATE synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 CSTHQDCGID 10
C T +D G D
Sbjct: 153 CKTARDAGAD 162


>sp|SYP_METB6|PROLINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 CSTHQDCGID 10
C+TH G+D
Sbjct: 405 CTTHTMDGLD 414


>sp|GGGPS_HALSA|GERANYLGERANYLGLYCERYL phosphate synthase|Halobacterium salinarum (strain ATCC 700922

Query: 3 THQDCGID 10
T DCG+D
Sbjct: 133 TGADCGLD 140


>sp|GGGPS_HALS3|GERANYLGERANYLGLYCERYL phosphate synthase|Halobacterium salinarum (strain ATCC 29341

Query: 3 THQDCGID 10
T DCG+D
Sbjct: 133 TGADCGLD 140


>sp|VHOG_METMA|F420 non-reducing hydrogenase I small|Methanosarcina mazei (strain ATCC

Query: 4 HQDCGI 9
H DCGI
Sbjct: 308 HADCGI 313


>sp|HEM11_PYRAR|GLUTAMYL-TRNA reductase 1|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 THQDCGID 10
TH++ G+D
Sbjct: 13 THKELGVD 20


>sp|HIS4_METHJ|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanospirillum hungatei JF-1

Query: 6 DCGID 10
DCG+D
Sbjct: 93 DCGVD 97


>sp|COFG_HALSA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Halobacterium salinarum (strain ATCC 700922

Query: 6 DCGID 10
DCG+D
Sbjct: 284 DCGVD 288


>sp|COFG_HALS3|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Halobacterium salinarum (strain ATCC 29341

Query: 6 DCGID 10
DCG+D
Sbjct: 284 DCGVD 288




90|SequenceR|455|446|TQGVPCSTHQ

>sp|PTH_METJA|PEPTIDYL-TRNA hydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 TQGVPCS 7
++G+PCS
Sbjct: 71 SEGLPCS 77


>sp|SYE_METM7|GLUTAMATE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 2 QGVPC 6
QG+PC
Sbjct: 201 QGIPC 205


>sp|SYE_METM6|GLUTAMATE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 2 QGVPC 6
QG+PC
Sbjct: 201 QGIPC 205


>sp|GYRB_HALVD|DNA gyrase subunit B|Haloferax volcanii (strain ATCC 29605

Query: 2 QGVPCSTHQ 10
+G+P TH+
Sbjct: 77 RGIPVDTHE 85


>sp|GYRB_HALL2|DNA gyrase subunit B|Haloferax lucentense (strain DSM 14919

Query: 2 QGVPCSTHQ 10
+G+P TH+
Sbjct: 77 RGIPVDTHE 85


>sp|RGYR1_SULTO|REVERSE gyrase 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 GVPCS 7
GVPCS
Sbjct: 25 GVPCS 29


>sp|RGYR2_SULAC|REVERSE gyrase 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 GVPCST 8
G+PC T
Sbjct: 25 GIPCET 30


>sp|Y1178_METTH|UPF0251 protein MTH_1178|Methanothermobacter thermautotrophicus (strain

Query: 1 TQGVPCSTHQ 10
T GVPC T +
Sbjct: 168 TPGVPCRTEK 177


>sp|FTHS_THEVO|FORMATE--TETRAHYDROFOLATE ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 TQGVPCSTH 9
T+GVP H
Sbjct: 246 TEGVPAFVH 254


>sp|FTHS_THEAC|FORMATE--TETRAHYDROFOLATE ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 TQGVPCSTH 9
T+GVP H
Sbjct: 246 TEGVPAFVH 254




91|SequenceR|460|451|LSPCCTQGVP

>sp|SUCD1_ARCFU|SUCCINATE--COA ligase [ADP-forming] subunit alpha|Archaeoglobus fulgidus (strain

Query: 4 CCTQGVP 10
C T+G+P
Sbjct: 98 CVTEGIP 104


>sp|SUCD2_ARCFU|SUCCINATE--COA ligase [ADP-forming] subunit alpha|Archaeoglobus fulgidus (strain

Query: 4 CCTQGVP 10
C T+G+P
Sbjct: 95 CITEGIP 101


>sp|TPIS_THEVO|TRIOSEPHOSPHATE isomerase|Thermoplasma volcanium (strain ATCC 51530

Query: 4 CCTQGVP 10
C T+GVP
Sbjct: 162 CGTEGVP 168


>sp|DPCKG_METKA|GTP-DEPENDENT dephospho-CoA kinase|Methanopyrus kandleri (strain AV19 /

Query: 1 LSPCCT 6
++PCCT
Sbjct: 183 ITPCCT 188




92|SequenceR|465|456|AWSGGLSPCC

>sp|Y1584_METJA|UNCHARACTERIZED protein MJ1584|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AWSGGLS 7
AWSGGLS
Sbjct: 39 AWSGGLS 45


>sp|NIFE_METTH|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 3 SGGLSPCC 10
SGG PCC
Sbjct: 43 SGGGGPCC 50


>sp|ARGC_METAR|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanocella arvoryzae (strain DSM 22066

Query: 2 WSGGLSP 8
W+ GLSP
Sbjct: 328 WTSGLSP 334


>sp|NRPR_METMP|GLOBAL nitrogen regulator NrpR|Methanococcus maripaludis (strain DSM 14266

Query: 4 GGLSPCC 10
GGL+P C
Sbjct: 268 GGLTPLC 274


>sp|Y1979_PYRFU|PROTEIN PF1979|Pyrococcus furiosus (strain ATCC 43587

Query: 2 WSGGLSPCC 10
W GL P C
Sbjct: 166 WKAGLPPDC 174


>sp|DCUP_THEAC|UROPORPHYRINOGEN decarboxylase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 AWSGGLSP 8
+W+G LSP
Sbjct: 200 SWAGYLSP 207


>sp|Y010_PYRAB|PROTEIN PYRAB00100|Pyrococcus abyssi (strain GE5 /

Query: 2 WSGGLSPCC 10
W GL P C
Sbjct: 166 WKAGLPPDC 174


>sp|Y952_ARCFU|UNCHARACTERIZED protein AF_0952|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 AWSGGLSPCC 10
W GG P C
Sbjct: 196 GWWGGAHPFC 205


>sp|MOAA_AERPE|PROBABLE GTP 3',8-cyclase|Aeropyrum pernix (strain ATCC 700893

Query: 2 WSGGLSPC 9
W G L PC
Sbjct: 262 WDGRLLPC 269


>sp|Y010_PYRHO|PROTEIN PH0010|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 WSGGLSPCC 10
W GL P C
Sbjct: 167 WKAGLPPDC 175


>sp|Y174_THEKO|PROTEIN TK0174|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 WSGGLSPCC 10
W GL P C
Sbjct: 166 WKAGLPPDC 174


>sp|Y1450_THEGJ|PROTEIN TGAM_1450|Thermococcus gammatolerans (strain DSM 15229

Query: 2 WSGGLSPCC 10
W GL P C
Sbjct: 166 WKAGLPPDC 174


>sp|Y1965_THEON|PROTEIN TON_1965|Thermococcus onnurineus (strain NA1)

Query: 2 WSGGLSPCC 10
W GL P C
Sbjct: 166 WKAGLPPDC 174


>sp|FOLD_CENSY|BIFUNCTIONAL protein FolD|Cenarchaeum symbiosum (strain A)

Query: 3 SGGLSPC 9
SGG PC
Sbjct: 23 SGGTDPC 29


>sp|SYS_METMJ|SERINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 4 GGLSPC 9
GLSPC
Sbjct: 256 AGLSPC 261


>sp|SYS_METHJ|SERINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 GGLSPC 9
GLSPC
Sbjct: 256 AGLSPC 261


>sp|SYS_METB6|SERINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 5 GLSPC 9
GLSPC
Sbjct: 257 GLSPC 261


>sp|SYS_KORCO|SERINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 5 GLSPC 9
GLSPC
Sbjct: 277 GLSPC 281


>sp|CMO_PYRFU|TUNGSTEN-CONTAINING aldehyde ferredoxin oxidoreductase cofactor-modifying|Pyrococcus

Query: 2 WSGGLSPC 9
W G + PC
Sbjct: 245 WDGEVVPC 252


>sp|ENGB_HALLT|PROBABLE GTP-binding protein EngB|Halorubrum lacusprofundi (strain ATCC

Query: 2 WSGGLSPCC 10
WS ++P C
Sbjct: 168 WSDQIAPIC 176


>sp|ARAD_SACS2|ARABINONATE dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 WSGGLS 7
W+GG+S
Sbjct: 277 WTGGIS 282


>sp|NFI_THEKO|ENDONUCLEASE V|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 AWSGGLS 7
+WSGG++
Sbjct: 188 SWSGGVN 194


>sp|DPCKG_CENSY|GTP-DEPENDENT dephospho-CoA kinase|Cenarchaeum symbiosum (strain A)

Query: 3 SGGLSPCC 10
+GG+SP C
Sbjct: 75 AGGISPEC 82


>sp|SPSS2_METLZ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 AWSGGLSPC 9
AW G S C
Sbjct: 38 AWGDGYSVC 46


>sp|SYP_CENSY|PROLINE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 1 AWSGGL 6
AW GGL
Sbjct: 428 AWCGGL 433




93|SequenceR|470|461|PLQCCAWSGG

>sp|Y1067_METMP|UNCHARACTERIZED iron-sulfur protein MMP1067|Methanococcus maripaludis (strain DSM

Query: 1 PLQCCAWSGG 10
P QCC GG
Sbjct: 416 PDQCCGAGGG 425


>sp|COMDE_METAC|SULFOPYRUVATE decarboxylase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 QCCAWSGG 10
+CCAW
Sbjct: 167 ECCAWQAA 174


>sp|AMPPA_METM7|AMP phosphorylase|Methanococcus maripaludis (strain C7 /

Query: 4 CCAWSGG 10
C AW GG
Sbjct: 232 CLAWGGG 238


>sp|AMPPA_METM6|AMP phosphorylase|Methanococcus maripaludis (strain C6 /

Query: 4 CCAWSGG 10
C AW GG
Sbjct: 232 CLAWGGG 238


>sp|AMPPA_METM5|AMP phosphorylase|Methanococcus maripaludis (strain C5 /

Query: 4 CCAWSGG 10
C AW GG
Sbjct: 232 CLAWGGG 238


>sp|Y1584_METJA|UNCHARACTERIZED protein MJ1584|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 6 AWSGG 10
AWSGG
Sbjct: 39 AWSGG 43


>sp|ILVD_METB6|DIHYDROXY-ACID dehydratase|Methanoregula boonei (strain DSM 21154

Query: 2 LQCCAWSG 9
L+CCA G
Sbjct: 183 LECCAMPG 190


>sp|SYV_ARCFU|VALINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PLQCCAW 7
PL C W
Sbjct: 457 PLMICGW 463


>sp|AROE_PYRAE|SHIKIMATE dehydrogenase (NADP(+))|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PLQCCAWSGG 10
P++ WSG
Sbjct: 165 PIEAIPWSGA 174


>sp|HDRB2_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 2 LQCCAWSGG 10
L CC GG
Sbjct: 192 LMCCGAGGG 200


>sp|HMED_ARCPA|HDR-LIKE menaquinol oxidoreductase iron-sulfur subunit|Archaeoglobus

Query: 4 CCAWSGG 10
CCA GG
Sbjct: 458 CCAAGGG 464




94|SequenceR|475|466|CCVAHPLQCC

>sp|DP2L_METST|DNA polymerase II large subunit|Methanosphaera stadtmanae (strain ATCC

Query: 1 CCVAHP 6
CC AHP
Sbjct: 853 CCYAHP 858


>sp|MUTS_HALWD|DNA mismatch repair protein MutS|Haloquadratum walsbyi (strain DSM

Query: 1 CCVAHP 6
CC AHP
Sbjct: 43 CCEAHP 48


>sp|SYFB_METVS|PHENYLALANINE--TRNA ligase beta subunit|Methanococcus vannielii (strain ATCC 35089

Query: 1 CCVAHPL 7
C V HPL
Sbjct: 474 CAVVHPL 480


>sp|FTSZ2_ARCFU|CELL division protein FtsZ 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 CVAHPL 7
C++HPL
Sbjct: 260 CLSHPL 265


>sp|OTC_METMP|ORNITHINE carbamoyltransferase|Methanococcus maripaludis (strain DSM 14266

Query: 1 CCVAHPLQ 8
C +AHP Q
Sbjct: 121 CDLAHPCQ 128


>sp|OTC_METM7|ORNITHINE carbamoyltransferase|Methanococcus maripaludis (strain C7 /

Query: 1 CCVAHPLQ 8
C +AHP Q
Sbjct: 121 CDLAHPCQ 128


>sp|OTC_METM5|ORNITHINE carbamoyltransferase|Methanococcus maripaludis (strain C5 /

Query: 1 CCVAHPLQ 8
C +AHP Q
Sbjct: 121 CDLAHPCQ 128


>sp|ACDA1_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus fulgidus

Query: 1 CCVAHPL 7
CC AH +
Sbjct: 270 CCTAHDM 276




95|SequenceR|480|471|HQRDECCVAH

>sp|CAH_METJA|PROBABLE carbonic anhydrase|Methanocaldococcus jannaschii (strain ATCC

Query: 5 ECCVAH 10
+CCV H
Sbjct: 49 DCCVVH 54


>sp|SFSA_METS3|SUGAR fermentation stimulation protein homolog|Methanobrevibacter smithii

Query: 1 HQRDECC 7
+Q D+CC
Sbjct: 118 NQEDDCC 124


>sp|APE2_AERPE|HOMING endonuclease I-ApeII|Aeropyrum pernix (strain ATCC 700893

Query: 1 HQRDECCV 8
++R ECCV
Sbjct: 117 YRRVECCV 124


>sp|DTDA_SACS2|D-AMINOACYL-TRNA deacylase|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 DECCVAH 10
DE C+ H
Sbjct: 175 DESCIGH 181


>sp|DTDA_SACI7|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 4 DECCVAH 10
DE C+ H
Sbjct: 175 DESCIGH 181


>sp|DTDA_SACI6|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain M.16.4 /

Query: 4 DECCVAH 10
DE C+ H
Sbjct: 175 DESCIGH 181


>sp|DTDA_SACI4|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain M.14.25 /

Query: 4 DECCVAH 10
DE C+ H
Sbjct: 175 DESCIGH 181


>sp|DTDA_SACI3|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 4 DECCVAH 10
DE C+ H
Sbjct: 175 DESCIGH 181


>sp|DTDA_SACI2|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 4 DECCVAH 10
DE C+ H
Sbjct: 175 DESCIGH 181


>sp|DTDA_SACI1|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 4 DECCVAH 10
DE C+ H
Sbjct: 175 DESCIGH 181


>sp|ACDA1_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus fulgidus

Query: 6 CCVAH 10
CC AH
Sbjct: 270 CCTAH 274




96|SequenceR|485|476|GAPCCHQRDE

>sp|NIFE_METTH|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 1 GAPCCHQ 7
G PCC++
Sbjct: 46 GGPCCNK 52


>sp|Y155_ARCFU|UNCHARACTERIZED protein AF_0155|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PCCH 6
PCCH
Sbjct: 85 PCCH 88




97|SequenceR|490|481|VNCTYGAPCC

>sp|Y1155_METJA|UPF0313 protein MJ1155|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 NCTYGAPC 9
NC Y PC
Sbjct: 367 NCLYPEPC 374


>sp|DAPF_METKA|DIAMINOPIMELATE epimerase|Methanopyrus kandleri (strain AV19 /

Query: 1 VNCTYGAP 8
VN TY AP
Sbjct: 169 VNVTYAAP 176


>sp|SYV_THEKO|VALINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 NCTYG 6
NCTYG
Sbjct: 267 NCTYG 271


>sp|SYV_PYRHO|VALINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 NCTYG 6
NCTYG
Sbjct: 267 NCTYG 271


>sp|SYV_PYRFU|VALINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 NCTYG 6
NCTYG
Sbjct: 267 NCTYG 271


>sp|SYV_PYRAB|VALINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 NCTYG 6
NCTYG
Sbjct: 267 NCTYG 271


>sp|PUR2_METKA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 NCTYGAP 8
NC YG P
Sbjct: 297 NCRYGDP 303


>sp|Y986_METM5|UPF0251 protein MmarC5_0986|Methanococcus maripaludis (strain C5 /

Query: 2 NCTYGAPCC 10
NC YG C
Sbjct: 114 NCRYGVSNC 122


>sp|Y272_METM6|UPF0251 protein MmarC6_0272|Methanococcus maripaludis (strain C6 /

Query: 2 NCTYGAPCC 10
NC YG C
Sbjct: 114 NCRYGVSNC 122


>sp|Y1642_METM7|UPF0251 protein MmarC7_1642|Methanococcus maripaludis (strain C7 /

Query: 2 NCTYGAPCC 10
NC YG C
Sbjct: 114 NCRYGVSNC 122


>sp|COBD_ARCFU|PROBABLE cobalamin biosynthesis protein CobD|Archaeoglobus fulgidus

Query: 1 VNCTYGAPCC 10
V YGA CC
Sbjct: 48 VEIFYGAFCC 57


>sp|Y2292_ARCFU|UNCHARACTERIZED protein AF_2292|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 YGAPCC 10
YGAP C
Sbjct: 215 YGAPFC 220


>sp|LEUC1_PYRFU|3-ISOPROPYLMALATE dehydratase large subunit 1|Pyrococcus furiosus (strain ATCC 43587

Query: 3 CTYGA 7
CTYGA
Sbjct: 128 CTYGA 132


>sp|LEUC1_PYRAB|3-ISOPROPYLMALATE dehydratase large subunit 1|Pyrococcus abyssi (strain GE5 /

Query: 3 CTYGA 7
CTYGA
Sbjct: 127 CTYGA 131


>sp|HACA_METMA|PROBABLE methanogen homoaconitase large subunit|Methanosarcina mazei (strain

Query: 2 NCTYGA 7
+CTYGA
Sbjct: 101 SCTYGA 106


>sp|GLPK2_SULAC|GLYCEROL kinase 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 VNCTYG 6
V CTYG
Sbjct: 257 VKCTYG 262


>sp|GLPK1_SULAC|GLYCEROL kinase 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 VNCTYG 6
V CTYG
Sbjct: 255 VKCTYG 260


>sp|HACA_METTH|PROBABLE methanogen homoaconitase large subunit|Methanothermobacter

Query: 3 CTYGA 7
CTYGA
Sbjct: 131 CTYGA 135


>sp|ACDE_METBU|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Methanococcoides

Query: 1 VNCTYG 6
++CTYG
Sbjct: 10 IHCTYG 15


>sp|YF7B_METJA|UNCHARACTERIZED protein MJ1572.1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 NCTYGAPCC 10
NC G P C
Sbjct: 77 NCADGCPLC 85


>sp|GLMU_METJA|BIFUNCTIONAL protein GlmU|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 NCTYGAPC 9
NC GA C
Sbjct: 377 NCWIGASC 384




98|SequenceR|495|486|CSRAKVNCTY

>sp|Y753_METJA|UNCHARACTERIZED protein MJ0753|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CSRAKVNCTY 10
C +VNCTY
Sbjct: 29 CPYGRVNCTY 38


>sp|RFCL_METAR|REPLICATION factor C large subunit|Methanocella arvoryzae (strain DSM 22066

Query: 1 CSRAKVNCTY 10
CS+A+ TY
Sbjct: 362 CSKAEARSTY 371




99|SequenceR|500|491|VVEKECSRAK

>sp|QUEC_METMJ|7-CYANO-7-DEAZAGUANINE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 EKECSRA 9
E+EC+RA
Sbjct: 43 ERECARA 49




100|SequenceR|505|496|APQASVVEKE

>sp|VORA_PYRHO|KETOISOVALERATE oxidoreductase subunit VorA|Pyrococcus horikoshii (strain ATCC

Query: 2 PQASVVEK 9
PQ S++EK
Sbjct: 35 PQTSIIEK 42


>sp|VORA_PYRFU|KETOISOVALERATE oxidoreductase subunit VorA|Pyrococcus furiosus (strain ATCC

Query: 2 PQASVVEK 9
PQ S++EK
Sbjct: 35 PQTSIIEK 42


>sp|VORA_PYRAB|KETOISOVALERATE oxidoreductase subunit VorA|Pyrococcus abyssi (strain GE5 /

Query: 2 PQASVVEK 9
PQ S++EK
Sbjct: 36 PQTSIIEK 43


>sp|RPO3_PYRIL|DNA-DIRECTED RNA polymerase subunit Rpo3|Pyrobaculum islandicum (strain DSM

Query: 2 PQASVVEK 9
P+A++VEK
Sbjct: 2 PKATIVEK 9




101|SequenceR|510|501|RALFTAPQAS

***** No hits found ******


102|SequenceR|515|506|GVHPSRALFT

>sp|ACDE_METKA|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Methanopyrus

Query: 1 GVHPSRALFT 10
GVHP +FT
Sbjct: 94 GVHPDLVVFT 103


>sp|HDRA_METJA|COB--COM heterodisulfide reductase iron-sulfur subunit|Methanocaldococcus

Query: 1 GVHPSRALF 9
G HP R +F
Sbjct: 374 GKHPHRVVF 382


>sp|METXA_HALSA|HOMOSERINE O-acetyltransferase|Halobacterium salinarum (strain ATCC 700922

Query: 1 GVHPSRAL 8
G HP R L
Sbjct: 195 GAHPDRGL 202




103|SequenceR|520|511|EVDKVGVHPS

>sp|CDC6K_HALMA|ORC1-TYPE DNA replication protein 11|Haloarcula marismortui (strain ATCC

Query: 2 VDKVGVHPS 10
VD VG+H S
Sbjct: 389 VDDVGIHKS 397


>sp|RS4_METTH|SMALL ribosomal subunit protein uS4|Methanothermobacter

Query: 1 EVDKVGVHPS 10
E DK+G +PS
Sbjct: 148 EEDKIGFYPS 157


>sp|HMEE_ARCFU|HDR-LIKE menaquinol oxidoreductase cytochrome c|Archaeoglobus fulgidus

Query: 3 DKVGVHP 9
D VG+HP
Sbjct: 109 DYVGIHP 115


>sp|DP2L_METKA|DNA polymerase II large subunit|Methanopyrus kandleri (strain AV19 /

Query: 5 VGVHPS 10
VGVHPS
Sbjct: 370 VGVHPS 375


>sp|RNH2_AERPE|RIBONUCLEASE HII|Aeropyrum pernix (strain ATCC 700893

Query: 2 VDKVGVHPS 10
V +GVHPS
Sbjct: 94 VSYLGVHPS 102


>sp|AATB_METST|A-TYPE ATP synthase subunit B|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 EVDKVGVHP 9
E+D+ G++P
Sbjct: 338 ELDRTGIYP 346


>sp|AROA_AERPE|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 3 DKVGVHPS 10
D+V VHPS
Sbjct: 8 DRVVVHPS 15


>sp|Y3016_METMA|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina mazei (strain

Query: 1 EVDKVGVHP 9
++ K+G+HP
Sbjct: 245 KLKKLGIHP 253


>sp|Y1127_METJA|UNCHARACTERIZED protein MJ1127|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 VGVHPS 10
VGVHP+
Sbjct: 77 VGVHPA 82




104|SequenceR|525|516|HGEGCEVDKV

>sp|RPO1N_METVS|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanococcus vannielii (strain ATCC

Query: 1 HGEGCEVDKV 10
HG+G ++DKV
Sbjct: 870 HGKGVDLDKV 879


>sp|LYSZ_CALMQ|PUTATIVE [LysW]-aminoadipate/[LysW]-glutamate kinase|Caldivirga

Query: 1 HGEGCEVDKV 10
HG GC V+ V
Sbjct: 31 HGGGCMVNSV 40


>sp|PUS10_ARCFU|TRNA pseudouridine synthase Pus10|Archaeoglobus fulgidus (strain ATCC

Query: 1 HGEGCEV 7
+GEGCEV
Sbjct: 143 NGEGCEV 149


>sp|COMC_METJA|L-SULFOLACTATE dehydrogenase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 EGCEVDK 9
EGC VDK
Sbjct: 196 EGCAVDK 202


>sp|MTTB2_METMA|TRIMETHYLAMINE methyltransferase MttB2|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 GCEVDK 9
GCEVD+
Sbjct: 57 GCEVDE 62


>sp|PDXT_NATPD|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Natronomonas pharaonis (strain

Query: 1 HGEGCEVDKV 10
HGE C V+ +
Sbjct: 27 HGEDCTVESI 36


>sp|MTTB2_METAC|TRIMETHYLAMINE methyltransferase MttB2|Methanosarcina acetivorans (strain ATCC

Query: 4 GCEVDK 9
GCEVD+
Sbjct: 57 GCEVDE 62


>sp|MTTB1_METAC|TRIMETHYLAMINE methyltransferase MttB1|Methanosarcina acetivorans (strain ATCC

Query: 4 GCEVDK 9
GCEVD+
Sbjct: 57 GCEVDE 62


>sp|G1PDH_METLZ|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanocorpusculum labreanum (strain ATCC

Query: 1 HGEGCEVDKV 10
HGE C V +
Sbjct: 278 HGEACGVGTI 287


>sp|RNZ_THEON|RIBONUCLEASE Z|Thermococcus onnurineus (strain NA1)

Query: 2 GEGCEVDK 9
GE CE+ K
Sbjct: 245 GEACEIAK 252


>sp|MTTB_METTE|TRIMETHYLAMINE methyltransferase MttB|Methanosarcina thermophila

Query: 4 GCEVDK 9
GCEVD+
Sbjct: 57 GCEVDE 62


>sp|MTTB_METBF|TRIMETHYLAMINE methyltransferase MttB|Methanosarcina barkeri (strain Fusaro /

Query: 4 GCEVDK 9
GCEVD+
Sbjct: 57 GCEVDE 62


>sp|OGT_METTH|METHYLATED-DNA--PROTEIN-CYSTEINE methyltransferase|Methanothermobacter thermautotrophicus (strain

Query: 3 EGCEVD 8
+GCEVD
Sbjct: 75 DGCEVD 80


>sp|BGAL_SACSH|BETA-GALACTOSIDASE shibatae (strain ATCC 51178

Query: 1 HGEGCEVDKV 10
+G GCE + V
Sbjct: 340 YGHGCERNSV 349


>sp|BGAL_SACS2|BETA-GALACTOSIDASE solfataricus (strain ATCC 35092

Query: 1 HGEGCEVDKV 10
+G GCE + V
Sbjct: 340 YGHGCERNSV 349


>sp|IF2G_THEAC|TRANSLATION initiation factor 2 subunit|Thermoplasma acidophilum (strain ATCC

Query: 2 GEGCEVDKV 10
GE C++++V
Sbjct: 75 GENCDLERV 83


>sp|AMPPA_THESM|AMP phosphorylase|Thermococcus sibiricus (strain DSM 12597

Query: 2 GEGCEVDKV 10
GEG +V+KV
Sbjct: 284 GEGVKVEKV 292


>sp|HCP_METAR|HYDROXYLAMINE reductase|Methanocella arvoryzae (strain DSM 22066

Query: 2 GEGCEVDKV 10
GEGC + V
Sbjct: 12 GEGCTISGV 20


>sp|Y474_PYRAB|UPF0292 protein PYRAB04740|Pyrococcus abyssi (strain GE5 /

Query: 2 GEGCEVD 8
G GC+VD
Sbjct: 87 GYGCKVD 93


>sp|Y1700_PYRHO|UPF0292 protein PH1700|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GEGCEVD 8
G GC+VD
Sbjct: 87 GYGCKVD 93


>sp|LYSZ_PYRAR|PUTATIVE [LysW]-aminoadipate/[LysW]-glutamate kinase|Pyrobaculum

Query: 1 HGEGCEVDKV 10
HG GC V++V
Sbjct: 33 HGGGCLVNEV 42


>sp|SYE_CALMQ|GLUTAMATE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 GEGCEVD 8
G GCE D
Sbjct: 210 GSGCEPD 216


>sp|Y327_METJA|UNCHARACTERIZED protein MJ0327|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HGEGCEVDK 9
H EG +VDK
Sbjct: 80 HAEGDDVDK 88


>sp|SYC_META3|CYSTEINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 HGEGCEV 7
HG GC++
Sbjct: 222 HGGGCDL 228


>sp|TRPE_THEKO|ANTHRANILATE synthase component 1|Thermococcus kodakarensis (strain ATCC

Query: 2 GEGCEVD 8
GEG E+D
Sbjct: 53 GEGTEID 59


>sp|RPO3_PICTO|DNA-DIRECTED RNA polymerase subunit Rpo3|Picrophilus torridus (strain ATCC

Query: 1 HGEGCEV 7
+GEGC++
Sbjct: 93 NGEGCDL 99


>sp|AMPP1_ARCFU|AMP phosphorylase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GEGCEVDKV 10
GEG +++KV
Sbjct: 285 GEGAKIEKV 293




105|SequenceR|530|521|NDHCFHGEGC

>sp|G1PDH_METS3|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanobrevibacter smithii (strain ATCC

Query: 4 CFHGEGC 10
C HGE C
Sbjct: 262 CLHGEQC 268


>sp|TH11_HALSA|PROBABLE transposase for insertion sequence|Halobacterium salinarum (strain

Query: 1 NDHCFHGEGC 10
+D +HG GC
Sbjct: 155 DDEYYHGYGC 164


>sp|TH11_HALS3|PROBABLE transposase for insertion sequence|Halobacterium salinarum (strain

Query: 1 NDHCFHGEGC 10
+D +HG GC
Sbjct: 155 DDEYYHGYGC 164


>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1 (strain

Query: 3 HCFHGE 8
+CFHG+
Sbjct: 872 NCFHGD 877


>sp|UVRC_HALLT|UVRABC system protein C|Halorubrum lacusprofundi (strain ATCC 49239

Query: 5 FHGEG 9
FHGEG
Sbjct: 233 FHGEG 237


>sp|Y897_ARCFU|UNCHARACTERIZED protein AF_0897|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 NDHCFHGE 8
N+HC H E
Sbjct: 123 NEHCSHIE 130


>sp|QUEC_METAC|7-CYANO-7-DEAZAGUANINE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 CFHGE 8
C+HGE
Sbjct: 195 CYHGE 199


>sp|FTHS_THEVO|FORMATE--TETRAHYDROFOLATE ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 NDHCFHG 7
N+H +HG
Sbjct: 131 NNHIYHG 137


>sp|PSTK_METKA|L-SERYL-TRNA(SEC) kinase|Methanopyrus kandleri (strain AV19 /

Query: 4 CFHGEG 9
C HG+G
Sbjct: 250 CLHGDG 255


>sp|FTHS_THEAC|FORMATE--TETRAHYDROFOLATE ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 NDHCFHG 7
N+H +HG
Sbjct: 131 NNHMYHG 137


>sp|FTHS_PICTO|FORMATE--TETRAHYDROFOLATE ligase|Picrophilus torridus (strain ATCC 700027

Query: 1 NDHCFHG 7
N+H +HG
Sbjct: 130 NNHMYHG 136


>sp|GSA_IGNH4|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 DHCFHG 7
D C+HG
Sbjct: 137 DGCYHG 142


>sp|GSA_AERPE|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Aeropyrum pernix (strain ATCC 700893

Query: 2 DHCFHG 7
D C+HG
Sbjct: 140 DGCYHG 145


>sp|GSA1_CENSY|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase 1|Cenarchaeum symbiosum (strain A)

Query: 2 DHCFHG 7
D C+HG
Sbjct: 135 DGCYHG 140


>sp|MALA_HALJT|ALPHA-AMYLASE MalA|Haloarcula japonica (strain ATCC 49778

Query: 1 NDHCFHG 7
NDH HG
Sbjct: 293 NDHAPHG 299


>sp|SAT_CENSY|SULFATE adenylyltransferase|Cenarchaeum symbiosum (strain A)

Query: 4 CFHGEG 9
C HGEG
Sbjct: 332 CPHGEG 337


>sp|GLYA_METAR|SERINE hydroxymethyltransferase|Methanocella arvoryzae (strain DSM 22066

Query: 3 HCFHGEG 9
+CF G+G
Sbjct: 410 YCFDGDG 416




106|SequenceR|535|526|RCCTQNDHCF

>sp|ACDA2_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus fulgidus

Query: 2 CCTQND 7
CCT ND
Sbjct: 273 CCTAND 278


>sp|APGM_METPE|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosphaerula palustris (strain ATCC

Query: 4 TQNDH 8
TQNDH
Sbjct: 103 TQNDH 107


>sp|CCA_METBF|CCA-ADDING enzyme|Methanosarcina barkeri (strain Fusaro /

Query: 3 CTQNDHC 9
CT DHC
Sbjct: 252 CTFIDHC 258


>sp|PRIL_PYRHO|DNA primase large subunit PriL|Pyrococcus horikoshii (strain ATCC

Query: 3 CTQNDHC 9
CT + HC
Sbjct: 351 CTPDKHC 357


>sp|PRIL_PYRFU|DNA primase large subunit PriL|Pyrococcus furiosus (strain ATCC 43587

Query: 3 CTQNDHC 9
CT + HC
Sbjct: 351 CTPDKHC 357


>sp|PRIL_PYRAB|DNA primase large subunit PriL|Pyrococcus abyssi (strain GE5 /

Query: 3 CTQNDHC 9
CT + HC
Sbjct: 350 CTPDKHC 356




107|SequenceR|540|531|GQRNDRCCTQ

>sp|SYL_THEAC|LEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 RNDRCCTQ 10
R RCCT
Sbjct: 4 RGRRCCTH 11


>sp|ARLY_METST|ARGININOSUCCINATE lyase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 RNDRCCT 9
RND+ CT
Sbjct: 107 RNDQVCT 113




108|SequenceR|545|536|PCCAWGQRND

>sp|SYV_HALMA|VALINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 2 CCAWGQRND 10
CC +G +ND
Sbjct: 305 CCTFGDQND 313


>sp|COMDE_METAC|SULFOPYRUVATE decarboxylase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 CCAW 5
CCAW
Sbjct: 168 CCAW 171


>sp|GUAA_AERPE|GMP synthase [glutamine-hydrolyzing]|Aeropyrum pernix (strain ATCC

Query: 1 PCCAWGQRND 10
P WG R+D
Sbjct: 61 PGSVWGSRHD 70


>sp|COFD_METB6|2-PHOSPHO-L-LACTATE transferase|Methanoregula boonei (strain DSM 21154

Query: 5 WGQRND 10
WG RND
Sbjct: 65 WGIRND 70


>sp|MFNB_META3|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 CAWGQRND 10
C++G RN+
Sbjct: 212 CSYGDRNE 219


>sp|Y2328_HALVD|UNCHARACTERIZED isochorismatase family protein HVO_2328|Haloferax volcanii

Query: 4 AWGQRND 10
AWG RN+
Sbjct: 25 AWGDRNN 31


>sp|RFCL_PYRCJ|REPLICATION factor C large subunit|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 CCAWGQRND 10
C W +R D
Sbjct: 42 CARWAKRRD 50


>sp|HIS3_CENSY|PHOSPHORIBOSYL-AMP cyclohydrolase|Cenarchaeum symbiosum (strain A)

Query: 1 PCCAWGQRN 9
P C G+RN
Sbjct: 93 PACHTGERN 101


>sp|AGLUS_METJA|ARCHAEAL glutamate synthase [NADPH]|Methanocaldococcus jannaschii (strain

Query: 3 CAWG 6
CAWG
Sbjct: 433 CAWG 436




109|SequenceR|550|541|VGQRYPCCAW

>sp|Y575_METJA|UNCHARACTERIZED protein MJ0575|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 QRYPCCA 9
QRYPC A
Sbjct: 193 QRYPCVA 199


>sp|CCA_METB6|CCA-ADDING enzyme|Methanoregula boonei (strain DSM 21154

Query: 1 VGQRYPCC 8
+ + YPCC
Sbjct: 264 IRKEYPCC 271


>sp|Y398_ARCFU|UNCHARACTERIZED protein AF_0398|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VGQRYPCCAW 10
VG YP AW
Sbjct: 125 VGSDYPIYAW 134


>sp|Y1577_ARCFU|UNCHARACTERIZED protein AF_1577|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GQRYPCCA 9
G+R+P CA
Sbjct: 29 GRRHPACA 36


>sp|SYFA_AERPE|PHENYLALANINE--TRNA ligase alpha subunit|Aeropyrum pernix (strain ATCC 700893

Query: 1 VGQRYPCCAW 10
VG YP AW
Sbjct: 443 VGVDYPVGAW 452


>sp|RL30_PYRNV|LARGE ribosomal subunit protein uL30|Pyrobaculum neutrophilum (strain DSM

Query: 2 GQRYPCCAW 10
GQR PC +
Sbjct: 125 GQRAPCIPY 133


>sp|SPH1_HALSI|SMC-LIKE protein Sph1|Halobacterium salinarum (Halobacterium halobium)

Query: 1 VGQRYPC 7
VG R PC
Sbjct: 556 VGDRVPC 562


>sp|SPH1_HALSA|SMC-LIKE protein Sph1|Halobacterium salinarum (strain ATCC 700922

Query: 1 VGQRYPC 7
VG R PC
Sbjct: 556 VGDRVPC 562


>sp|SPH1_HALS3|SMC-LIKE protein Sph1|Halobacterium salinarum (strain ATCC 29341

Query: 1 VGQRYPC 7
VG R PC
Sbjct: 556 VGDRVPC 562


>sp|Y2167_ARCFU|UNCHARACTERIZED protein AF_2167|Archaeoglobus fulgidus (strain ATCC 49558

Query: 6 PCCAW 10
PC AW
Sbjct: 258 PCAAW 262




110|SequenceR|555|546|RDACCVGQRY

>sp|GSA_HALLT|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 DACCVG 7
DACC G
Sbjct: 366 DACCAG 371


>sp|CAS10_METJA|CRISPR system single-strand-specific deoxyribonuclease

Query: 3 ACCVGQRY 10
ACC+ Q Y
Sbjct: 225 ACCLYQMY 232




111|SequenceR|560|551|PCCHRRDACC

>sp|RNZ_PYRIL|RIBONUCLEASE Z|Pyrobaculum islandicum (strain DSM 4184

Query: 3 CHRRDAC 9
CH DAC
Sbjct: 123 CHTVDAC 129


>sp|RNZ_PYRCJ|RIBONUCLEASE Z|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 CHRRDAC 9
CH DAC
Sbjct: 123 CHTVDAC 129


>sp|RNZ_PYRAR|RIBONUCLEASE Z|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 CHRRDAC 9
CH DAC
Sbjct: 123 CHTVDAC 129


>sp|RNZ_PYRAE|RIBONUCLEASE Z|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 CHRRDAC 9
CH DAC
Sbjct: 123 CHTVDAC 129


>sp|RNZ_PYRNV|RIBONUCLEASE Z|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 CHRRDAC 9
CH DAC
Sbjct: 123 CHTVDAC 129


>sp|PUR1_METJA|AMIDOPHOSPHORIBOSYLTRANSFERASE jannaschii (strain ATCC 43067

Query: 1 PCCHRRDACC 10
PC +R A C
Sbjct: 246 PCIYRGAATC 255


>sp|NPD_HALMA|NAD-DEPENDENT protein deacetylase|Haloarcula marismortui (strain ATCC 43049

Query: 2 CCHRRDA 8
C HRRDA
Sbjct: 143 CGHRRDA 149


>sp|GSA_HALLT|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 PCCHRRDAC 9
P C R D C
Sbjct: 377 PDCDRYDTC 385




112|SequenceR|565|556|CRFGAPCCHR

>sp|SYL_METMA|LEUCINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 CRFGAPC 7
CR G PC
Sbjct: 439 CRCGTPC 445


>sp|SYL_METJA|LEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CRFGAPC 7
CR G PC
Sbjct: 440 CRCGTPC 446


>sp|SYL_METBU|LEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 CRFGAPC 7
CR G PC
Sbjct: 439 CRCGTPC 445


>sp|SYL_METBF|LEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 CRFGAPC 7
CR G PC
Sbjct: 439 CRCGTPC 445


>sp|SYL_METAC|LEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 CRFGAPC 7
CR G PC
Sbjct: 439 CRCGTPC 445


>sp|NIFE_METTH|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 4 GAPCCHR 10
G PCC++
Sbjct: 46 GGPCCNK 52


>sp|SYE_STAMF|GLUTAMATE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 4 GAPCCHR 10
G PC HR
Sbjct: 197 GKPCPHR 203


>sp|SYE_METAR|GLUTAMATE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 4 GAPCCHR 10
G PC HR
Sbjct: 216 GKPCPHR 222


>sp|SYE_IGNH4|GLUTAMATE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 4 GAPCCHR 10
G PC HR
Sbjct: 208 GKPCPHR 214


>sp|SYE_PYRHO|GLUTAMATE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 GAPCCHR 10
G PC HR
Sbjct: 209 GIPCPHR 215


>sp|SYE_PYRAB|GLUTAMATE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 4 GAPCCHR 10
G PC HR
Sbjct: 210 GIPCPHR 216


>sp|Y155_ARCFU|UNCHARACTERIZED protein AF_0155|Archaeoglobus fulgidus (strain ATCC 49558

Query: 6 PCCH 9
PCCH
Sbjct: 85 PCCH 88


>sp|SYE_NANEQ|GLUTAMATE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 4 GAPCCHR 10
G PC HR
Sbjct: 195 GLPCPHR 201


>sp|TF2B_METJA|TRANSCRIPTION initiation factor IIB|Methanocaldococcus jannaschii (strain ATCC

Query: 1 CRFGAP 6
CR GAP
Sbjct: 91 CRVGAP 96


>sp|NIFE_METTM|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 1 CRFGAPCCHR 10
C G P C+R
Sbjct: 46 CSGGGPRCNR 55




113|SequenceR|570|561|TGRAACRFGA

>sp|CAS1_METKA|CRISPR-ASSOCIATED endonuclease Cas1|Methanopyrus kandleri (strain AV19 /

Query: 2 GRAACRF 8
GRAACR+
Sbjct: 156 GRAACRY 162


>sp|ENO1_METHJ|ENOLASE 1|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 GRAACRFGA 10
GRAAC GA
Sbjct: 33 GRAACPSGA 41


>sp|ENO2_METHJ|ENOLASE 2|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 GRAACRFGA 10
GRAAC GA
Sbjct: 34 GRAACPSGA 42


>sp|RL10E_THEKO|LARGE ribosomal subunit protein uL16|Thermococcus kodakarensis (strain

Query: 1 TGRAACRFG 9
TGR A R+G
Sbjct: 101 TGRKADRYG 109


>sp|RL10E_THEGJ|LARGE ribosomal subunit protein uL16|Thermococcus gammatolerans (strain

Query: 1 TGRAACRFG 9
TGR A R+G
Sbjct: 101 TGRKADRYG 109


>sp|RL10E_THEON|LARGE ribosomal subunit protein uL16|Thermococcus onnurineus (strain NA1)

Query: 1 TGRAACRFG 9
TGR A R+G
Sbjct: 101 TGRKADRYG 109


>sp|RL10E_PYRAB|LARGE ribosomal subunit protein uL16|Pyrococcus abyssi (strain GE5 /

Query: 1 TGRAACRFG 9
TGR A R+G
Sbjct: 101 TGRKADRYG 109


>sp|RL10E_THESM|LARGE ribosomal subunit protein uL16|Thermococcus sibiricus (strain DSM

Query: 1 TGRAACRFG 9
TGR A R+G
Sbjct: 101 TGRKADRYG 109


>sp|RL10E_PYRFU|LARGE ribosomal subunit protein uL16|Pyrococcus furiosus (strain ATCC

Query: 1 TGRAACRFG 9
TGR A R+G
Sbjct: 101 TGRKADRYG 109




114|SequenceR|575|566|RRLCKTGRAA

>sp|KAD_METTP|ADENYLATE kinase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 RRLCKTGRA 9
RR+CK GR+
Sbjct: 127 RRMCKCGRS 135


>sp|DNAG_METKA|DNA primase DnaG|Methanopyrus kandleri (strain AV19 /

Query: 1 RRLCKTGR 8
RRL KTGR
Sbjct: 51 RRLLKTGR 58


>sp|TRUD_NATPD|PROBABLE tRNA pseudouridine synthase D|Natronomonas pharaonis (strain ATCC

Query: 1 RRLCKTGRA 9
RR C+ GRA
Sbjct: 335 RRHCERGRA 343




115|SequenceR|580|571|WRPAERRLCK

>sp|GLNA_METTH|GLUTAMINE synthetase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 WRPAERRLCK 10
WRP E+ +C+
Sbjct: 84 WRPEEKGVCR 93


>sp|PELO_CENSY|PROTEIN pelota homolog|Cenarchaeum symbiosum (strain A)

Query: 1 WRPAERRLCK 10
W P ER+L +
Sbjct: 113 WGPGERKLLR 122


>sp|ILVD_METMJ|DIHYDROXY-ACID dehydratase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 WRPAERRL 8
W+P RRL
Sbjct: 519 WKPPARRL 526


>sp|XACC_HALVD|PENTONOLACTONASE XacC|Haloferax volcanii (strain ATCC 29605

Query: 1 WRPAERRL 8
W P E+RL
Sbjct: 19 WHPDEKRL 26


>sp|SYE_IGNH4|GLUTAMATE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 WRPAERR 7
WRP ER+
Sbjct: 515 WRPGERK 521


>sp|MTSA_METMA|METHYLATED-THIOL--COENZYME M methyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 PAERRLCK 10
PA RRL K
Sbjct: 220 PAHRRLAK 227


>sp|OTC_METKA|ORNITHINE carbamoyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 1 WRPAERR 7
WR ERR
Sbjct: 198 WREVERR 204




116|SequenceR|585|576|RLPADWRPAE

>sp|GPGS_METBU|GLUCOSYL-3-PHOSPHOGLYCERATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 RLPADW 6
R+PADW
Sbjct: 236 RIPADW 241


>sp|FLUC_THEON|FLUORIDE-SPECIFIC ion channel FluC|Thermococcus onnurineus (strain NA1)

Query: 2 LPADWR 7
+PADWR
Sbjct: 61 VPADWR 66


>sp|HELS_METJA|ATP-DEPENDENT DNA helicase Hel308|Methanocaldococcus jannaschii (strain ATCC

Query: 5 DWRPAE 10
DWRP E
Sbjct: 196 DWRPVE 201


>sp|TDXH2_SULME|PEROXIREDOXIN 2|Sulfuracidifex metallicus (Sulfolobus metallicus)

Query: 2 LPADWRPAE 10
LPA+W P +
Sbjct: 165 LPANWEPGQ 173


>sp|TDXH_METMA|PEROXIREDOXIN mazei (strain ATCC BAA-159

Query: 3 PADWRPAE 10
PA+W+P E
Sbjct: 173 PANWQPGE 180


>sp|TDXH1_SULTO|PEROXIREDOXIN 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 LPADWRPAE 10
LPA+W+P +
Sbjct: 166 LPANWQPGQ 174


>sp|TDXH1_SULME|PEROXIREDOXIN 1|Sulfuracidifex metallicus (Sulfolobus metallicus)

Query: 2 LPADWRPAE 10
LP DW P +
Sbjct: 165 LPVDWEPGQ 173


>sp|FLUC_THEGJ|FLUORIDE-SPECIFIC ion channel FluC|Thermococcus gammatolerans (strain DSM 15229

Query: 2 LPADWR 7
+P+DWR
Sbjct: 61 VPSDWR 66


>sp|SECE_ACIAM|PROTEIN translocase subunit SecE|Acidianus ambivalens (Desulfurolobus

Query: 1 RLPADWR 7
+LP DW+
Sbjct: 9 KLPEDWK 15


>sp|Y912_ARCFU|UNCHARACTERIZED protein AF_0912|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 RLPADWR 7
R+P DW+
Sbjct: 83 RIPEDWQ 89


>sp|HELS_THEKO|ATP-DEPENDENT DNA helicase Hel308|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 ADWRPAE 10
+DWRP E
Sbjct: 196 SDWRPVE 202


>sp|RS15_METJA|SMALL ribosomal subunit protein uS15|Methanocaldococcus jannaschii

Query: 2 LPADWR 7
LPADWR
Sbjct: 135 LPADWR 140


>sp|GLCDH_HALMA|GLUCOSE 1-dehydrogenase|Haloarcula marismortui (strain ATCC 43049

Query: 1 RLPADWRP 8
R P DWRP
Sbjct: 166 REPFDWRP 173


>sp|MOBA_PYRHO|PROBABLE molybdenum cofactor guanylyltransferase|Pyrococcus horikoshii

Query: 1 RLPADWR 7
+LP +WR
Sbjct: 170 KLPVEWR 176


>sp|RRP41_AERPE|EXOSOME complex component Rrp41|Aeropyrum pernix (strain ATCC 700893

Query: 1 RLPADWRP 8
RLP D RP
Sbjct: 21 RLPEDLRP 28


>sp|HELS_METVS|ATP-DEPENDENT DNA helicase Hel308|Methanococcus vannielii (strain ATCC 35089

Query: 5 DWRPAE 10
+WRP E
Sbjct: 196 EWRPVE 201


>sp|Y1659_ARCFU|UNCHARACTERIZED protein AF_1659|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 DWRPAE 10
DW+P E
Sbjct: 58 DWKPGE 63


>sp|RS15_ARCFU|SMALL ribosomal subunit protein uS15|Archaeoglobus fulgidus (strain ATCC

Query: 2 LPADWR 7
LPADW+
Sbjct: 135 LPADWK 140


>sp|HELS_CALMQ|ATP-DEPENDENT DNA helicase Hel308|Caldivirga maquilingensis (strain ATCC 700844

Query: 4 ADWRP 8
+DWRP
Sbjct: 200 SDWRP 204


>sp|RS15_PYRAB|SMALL ribosomal subunit protein uS15|Pyrococcus abyssi (strain GE5 /

Query: 1 RLPADWR 7
+LP DWR
Sbjct: 141 KLPKDWR 147


>sp|TDXH_THEVO|PEROXIREDOXIN volcanium (strain ATCC 51530

Query: 3 PADWRPAE 10
PA+W+P +
Sbjct: 165 PANWQPGQ 172


>sp|TDXH2_THEAC|PEROXIREDOXIN 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 PADWRPAE 10
PA+W+P +
Sbjct: 161 PANWQPGQ 168


>sp|HELS_HALSA|ATP-DEPENDENT DNA helicase Hel308|Halobacterium salinarum (strain ATCC 700922

Query: 2 LPADWRPAE 10
+ +DWRP E
Sbjct: 206 VDSDWRPIE 214


>sp|HELS_HALS3|ATP-DEPENDENT DNA helicase Hel308|Halobacterium salinarum (strain ATCC 29341

Query: 2 LPADWRPAE 10
+ +DWRP E
Sbjct: 206 VDSDWRPIE 214


>sp|TATCT_HALVD|SEC-INDEPENDENT protein translocase protein TatCt|Haloferax volcanii (strain ATCC

Query: 1 RLPADWRPAE 10
RLPA RP E
Sbjct: 511 RLPAAVRPEE 520


>sp|CRTD_HALJT|CAROTENOID 3,4-desaturase|Haloarcula japonica (strain ATCC 49778

Query: 2 LPADWRP 8
LP DW P
Sbjct: 333 LPTDWDP 339


>sp|HELS_PYRFU|ATP-DEPENDENT DNA helicase Hel308|Pyrococcus furiosus (strain ATCC 43587

Query: 4 ADWRPAE 10
+DWRP +
Sbjct: 196 SDWRPVK 202


>sp|TDXH2_PICTO|PEROXIREDOXIN 2|Picrophilus torridus (strain ATCC 700027

Query: 3 PADWRPAE 10
P +WRP +
Sbjct: 165 PVNWRPGD 172


>sp|HELS_PYRHO|ATP-DEPENDENT DNA helicase Hel308|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 LPADWRPAE 10
+ +DWRP +
Sbjct: 194 IKSDWRPVK 202


>sp|RS15_STAMF|SMALL ribosomal subunit protein uS15|Staphylothermus marinus (strain ATCC

Query: 1 RLPADWR 7
RLP DW+
Sbjct: 134 RLPPDWK 140


>sp|RS15_METVS|SMALL ribosomal subunit protein uS15|Methanococcus vannielii (strain ATCC

Query: 2 LPADWR 7
LPA WR
Sbjct: 135 LPATWR 140


>sp|ARSA_HALSA|PUTATIVE arsenical pump-driving ATPase|Halobacterium salinarum (strain ATCC

Query: 1 RLPADWR 7
LP+DW+
Sbjct: 493 ELPSDWK 499


>sp|RS15_PYRHO|SMALL ribosomal subunit protein uS15|Pyrococcus horikoshii (strain ATCC

Query: 1 RLPADWR 7
+LP DWR
Sbjct: 141 KLPRDWR 147


>sp|RS15_THEKO|SMALL ribosomal subunit protein uS15|Thermococcus kodakarensis (strain

Query: 1 RLPADWR 7
+LPA WR
Sbjct: 134 KLPAKWR 140


>sp|HISX_HALSA|HISTIDINOL dehydrogenase|Halobacterium salinarum (strain ATCC 700922

Query: 1 RLPADWR 7
+LP DWR
Sbjct: 96 QLPDDWR 102


>sp|RS15_PICTO|SMALL ribosomal subunit protein uS15|Picrophilus torridus (strain ATCC

Query: 1 RLPADW 6
RLP DW
Sbjct: 134 RLPQDW 139


>sp|RS15_METM7|SMALL ribosomal subunit protein uS15|Methanococcus maripaludis (strain C7

Query: 2 LPADWR 7
LPA WR
Sbjct: 135 LPAKWR 140


>sp|RS15_METMP|SMALL ribosomal subunit protein uS15|Methanococcus maripaludis (strain

Query: 2 LPADWR 7
LPA WR
Sbjct: 135 LPAKWR 140


>sp|RS15_METM5|SMALL ribosomal subunit protein uS15|Methanococcus maripaludis (strain C5

Query: 2 LPADWR 7
LPA WR
Sbjct: 135 LPAKWR 140


>sp|GCST_HALSA|PROBABLE aminomethyltransferase|Halobacterium salinarum (strain ATCC 700922

Query: 1 RLPADW 6
R PADW
Sbjct: 103 RTPADW 108


>sp|GCST_HALS3|PROBABLE aminomethyltransferase|Halobacterium salinarum (strain ATCC 29341

Query: 1 RLPADW 6
R PADW
Sbjct: 103 RTPADW 108


>sp|SYK_METJA|LYSINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LPADWRP 8
LP DW P
Sbjct: 160 LPDDWWP 166


>sp|RS15_META3|SMALL ribosomal subunit protein uS15|Methanococcus aeolicus (strain ATCC

Query: 2 LPADWR 7
LPA WR
Sbjct: 135 LPAKWR 140


>sp|PHS_HALSA|PUTATIVE pterin-4-alpha-carbinolamine dehydratase|Halobacterium salinarum

Query: 1 RLPADW 6
RLP DW
Sbjct: 13 RLPDDW 18


>sp|PHS_HALS3|PUTATIVE pterin-4-alpha-carbinolamine dehydratase|Halobacterium salinarum

Query: 1 RLPADW 6
RLP DW
Sbjct: 13 RLPDDW 18


>sp|HELS_PYRAB|ATP-DEPENDENT DNA helicase Hel308|Pyrococcus abyssi (strain GE5 /

Query: 4 ADWRPAE 10
+DWRP +
Sbjct: 196 SDWRPVK 202




117|SequenceR|593|581|LLQRLAPDRLPAD

>sp|COFH_METKA|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanopyrus kandleri (strain AV19 /

Query: 3 QRLAPDRLPAD 13
+RL PD+L AD
Sbjct: 190 KRLCPDKLEAD 200


>sp|Y2337_ARCFU|UNCHARACTERIZED protein AF_2337|Archaeoglobus fulgidus (strain ATCC 49558

Query: 7 PDRLPA 12
PDRLPA
Sbjct: 62 PDRLPA 67


>sp|EF2_THEAC|ELONGATION factor 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 LLQRLAPDRLPAD 13
L + PDR+P D
Sbjct: 337 LAMMVGPDRIPVD 349


>sp|CDC61_METTH|ORC1-TYPE DNA replication protein 1|Methanothermobacter thermautotrophicus

Query: 1 LLQRLAPDRLP 11
L R PDRLP
Sbjct: 20 LDHRFLPDRLP 30


>sp|DNAG_SULTO|DNA primase DnaG|Sulfurisphaera tokodaii (strain DSM 16993

Query: 6 APDRLPA 12
PDRLPA
Sbjct: 151 GPDRLPA 157


>sp|EF2_PICTO|ELONGATION factor 2|Picrophilus torridus (strain ATCC 700027

Query: 5 LAPDRLPAD 13
+ PDR+P D
Sbjct: 341 VGPDRIPID 349


>sp|HIS7_HALSA|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Halobacterium salinarum (strain ATCC 700922

Query: 2 LQRLAPDRLPAD 13
+QR A R+P D
Sbjct: 90 IQRFADRRVPLD 101


>sp|HIS7_HALS3|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Halobacterium salinarum (strain ATCC 29341

Query: 2 LQRLAPDRLPAD 13
+QR A R+P D
Sbjct: 90 IQRFADRRVPLD 101


>sp|LEUC_NATPD|3-ISOPROPYLMALATE dehydratase large subunit|Natronomonas pharaonis (strain ATCC 35678

Query: 6 APDRLPAD 13
AP+ LPAD
Sbjct: 308 APEDLPAD 315


>sp|ARLY_METKA|ARGININOSUCCINATE lyase|Methanopyrus kandleri (strain AV19 /

Query: 6 APDRLPAD 13
PDRLP D
Sbjct: 74 GPDRLPED 81


>sp|DNAG_SULAC|DNA primase DnaG|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 LQRLAPDRLPA 12
L P+RLPA
Sbjct: 147 LTEYGPERLPA 157


>sp|EF2_THEVO|ELONGATION factor 2|Thermoplasma volcanium (strain ATCC 51530

Query: 1 LLQRLAPDRLPAD 13
L + PDR+P +
Sbjct: 337 LAMMVGPDRIPVE 349


>sp|CAPPA_METMA|PHOSPHOENOLPYRUVATE carboxylase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 LQRLAPDRLP 11
L RLA +RLP
Sbjct: 284 LVRLAEERLP 293


>sp|RNH2_PYRAE|RIBONUCLEASE HII|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 LQRLAPDRLPAD 13
LQRL R+P++
Sbjct: 170 LQRLREGRMPSE 181


>sp|MUTL_HALSA|DNA mismatch repair protein MutL|Halobacterium salinarum (strain ATCC

Query: 4 RLAPDRLP 11
+LAPDR P
Sbjct: 280 QLAPDRYP 287


>sp|MUTL_HALS3|DNA mismatch repair protein MutL|Halobacterium salinarum (strain ATCC

Query: 4 RLAPDRLP 11
+LAPDR P
Sbjct: 280 QLAPDRYP 287


>sp|TRUA_PYRCJ|TRNA pseudouridine synthase A|Pyrobaculum calidifontis (strain DSM

Query: 5 LAPDRLP 11
LAP RLP
Sbjct: 54 LAPSRLP 60


>sp|EF2_METJA|ELONGATION factor 2|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 LAPDRLPAD 13
+ P+R+P D
Sbjct: 342 MGPERIPVD 350


>sp|IF2P_CALMQ|PROBABLE translation initiation factor IF-2|Caldivirga maquilingensis

Query: 1 LLQRLAPDRL 10
L QRL DRL
Sbjct: 219 LTQRLVKDRL 228


>sp|Y1725_METS5|PUTATIVE HTH-type transcriptional regulatory protein|Metallosphaera sedula

Query: 2 LQRLAPDRLPAD 13
L +L PD P D
Sbjct: 185 LPKLEPDSQPTD 196


>sp|DNAG_METLZ|DNA primase DnaG|Methanocorpusculum labreanum (strain ATCC 43576

Query: 5 LAPDRLPA 12
+ P+RLPA
Sbjct: 156 IGPERLPA 163


>sp|DNLI_METB6|DNA ligase|Methanoregula boonei (strain DSM 21154

Query: 5 LAPDRLP 11
LAPD LP
Sbjct: 33 LAPDELP 39




THE END