GRN_HUMAN Blast Output
Archaea
1|Sequence|1|10|MWTLVSWVAL

>sp|RFCL_PYRAE|REPLICATION factor C large subunit|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 WTLVSWVAL 10
+TL SW+ L
Sbjct: 25 YTLASWICL 33


>sp|TTRA_ARCFU|TETRATHIONATE reductase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 WTLVSWVA 9
W L+SW+
Sbjct: 1099 WPLLSWIG 1106


>sp|SYE_PYRHO|GLUTAMATE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 WTLVSWV 8
W +V WV
Sbjct: 504 WKMVHWV 510


>sp|SYE_THEON|GLUTAMATE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 2 WTLVSWV 8
W +V WV
Sbjct: 507 WRMVHWV 513


>sp|SYE_THEKO|GLUTAMATE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 WTLVSWV 8
W +V WV
Sbjct: 507 WRMVHWV 513


>sp|TREH2_SULAC|TREHALASE 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 LVSWVAL 10
L+SWVAL
Sbjct: 395 LMSWVAL 401


>sp|SODF_ACIAM|SUPEROXIDE dismutase [Fe]|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 2 WTLVSW 7
W LV+W
Sbjct: 193 WNLVNW 198




2|Sequence|6|15|SWVALTAGLV

>sp|SYFA_METMJ|PHENYLALANINE--TRNA ligase alpha subunit|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 WVALTAGLV 10
W+A+T G+V
Sbjct: 109 WIAITGGVV 117


>sp|Y2025_ARCFU|UNCHARACTERIZED protein AF_2025|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 WVALTAGL 9
WV +TAG+
Sbjct: 66 WVLMTAGV 73




3|Sequence|11|20|TAGLVAGTRC

>sp|Y150_METJA|UNCHARACTERIZED protein MJ0150|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 AGLVAGT 8
AGL+AGT
Sbjct: 131 AGLIAGT 137


>sp|GLCD2_SACS2|GLUCOSE 1-dehydrogenase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 GLVAGTR 9
GLVAGT+
Sbjct: 114 GLVAGTK 120


>sp|PSA_METKA|PROTEASOME subunit alpha|Methanopyrus kandleri (strain AV19 /

Query: 1 TAGLVAGTRC 10
TAGLVA R
Sbjct: 80 TAGLVADARV 89


>sp|IF6_METAR|TRANSLATION initiation factor 6|Methanocella arvoryzae (strain DSM 22066

Query: 1 TAGLVAGTRC 10
T GL+ GTR
Sbjct: 195 TKGLITGTRT 204


>sp|IF2B_METMJ|TRANSLATION initiation factor 2 subunit|Methanoculleus marisnigri (strain

Query: 1 TAGLVAGTR 9
TAG V GTR
Sbjct: 69 TAGKVEGTR 77


>sp|CDC6_METMJ|ORC1-TYPE DNA replication protein|Methanoculleus marisnigri (strain ATCC

Query: 2 AGLVAGTRC 10
A +AGT+C
Sbjct: 87 ASALAGTKC 95


>sp|IF2B_METAC|TRANSLATION initiation factor 2 subunit|Methanosarcina acetivorans (strain

Query: 1 TAGLVAGTR 9
TAG + GTR
Sbjct: 68 TAGKIEGTR 76


>sp|IF2B_METMA|TRANSLATION initiation factor 2 subunit|Methanosarcina mazei (strain ATCC

Query: 1 TAGLVAGTR 9
TAG + GTR
Sbjct: 68 TAGKIEGTR 76




4|Sequence|16|25|AGTRCPDGQF

>sp|RPO3_SACI7|DNA-DIRECTED RNA polymerase subunit Rpo3|Saccharolobus islandicus (strain

Query: 1 AGTRCPDGQF 10
A T CP+G F
Sbjct: 179 AATVCPEGVF 188


>sp|RPO3_SACI6|DNA-DIRECTED RNA polymerase subunit Rpo3|Saccharolobus islandicus (strain M.16.4

Query: 1 AGTRCPDGQF 10
A T CP+G F
Sbjct: 179 AATVCPEGVF 188


>sp|RPO3_SACI4|DNA-DIRECTED RNA polymerase subunit Rpo3|Saccharolobus islandicus (strain

Query: 1 AGTRCPDGQF 10
A T CP+G F
Sbjct: 179 AATVCPEGVF 188


>sp|RPO3_SACI3|DNA-DIRECTED RNA polymerase subunit Rpo3|Saccharolobus islandicus (strain

Query: 1 AGTRCPDGQF 10
A T CP+G F
Sbjct: 179 AATVCPEGVF 188


>sp|RPO3_SACI2|DNA-DIRECTED RNA polymerase subunit Rpo3|Saccharolobus islandicus (strain

Query: 1 AGTRCPDGQF 10
A T CP+G F
Sbjct: 179 AATVCPEGVF 188


>sp|RPO3_SACI1|DNA-DIRECTED RNA polymerase subunit Rpo3|Saccharolobus islandicus (strain

Query: 1 AGTRCPDGQF 10
A T CP+G F
Sbjct: 179 AATVCPEGVF 188


>sp|RS12_METMP|SMALL ribosomal subunit protein uS12|Methanococcus maripaludis (strain

Query: 1 AGTRCPDGQF 10
AG++ P G+F
Sbjct: 2 AGSKSPKGEF 11


>sp|RLMH_METB6|PUTATIVE ribosomal RNA large subunit|Methanoregula boonei (strain DSM

Query: 2 GTRCPDGQ 9
GTR P GQ
Sbjct: 44 GTRAPAGQ 51


>sp|RS12_METM5|SMALL ribosomal subunit protein uS12|Methanococcus maripaludis (strain

Query: 1 AGTRCPDGQF 10
AG++ P G+F
Sbjct: 2 AGSKSPKGEF 11


>sp|RS12_METM7|SMALL ribosomal subunit protein uS12|Methanococcus maripaludis (strain

Query: 1 AGTRCPDGQF 10
AG++ P G+F
Sbjct: 2 AGSKSPKGEF 11


>sp|K1PF_HALVD|1-PHOSPHOFRUCTOKINASE volcanii (strain ATCC 29605

Query: 1 AGTRCPD 7
AGTR PD
Sbjct: 280 AGTRVPD 286


>sp|HTR2_NATPH|SENSORY rhodopsin II transducer|Natronomonas pharaonis (Natronobacterium

Query: 4 RCPDGQF 10
RC DG F
Sbjct: 172 RCADGDF 178


>sp|RPO3_SACSH|DNA-DIRECTED RNA polymerase subunit Rpo3|Saccharolobus shibatae (strain ATCC

Query: 1 AGTRCPDGQF 10
T CP+G F
Sbjct: 179 GATVCPEGVF 188


>sp|AATB_METJA|A-TYPE ATP synthase subunit B|Methanocaldococcus jannaschii (strain ATCC

Query: 5 CPDGQ 9
CPDG+
Sbjct: 39 CPDGE 43


>sp|NTPTH_IGNH4|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 GTRCPD 7
GT CPD
Sbjct: 34 GTSCPD 39


>sp|FDHA_METFO|F420-DEPENDENT formate dehydrogenase subunit alpha|Methanobacterium formicicum

Query: 2 GTRCPDGQF 10
G CP G F
Sbjct: 42 GKLCPKGNF 50


>sp|PUR7_HALSA|PUTATIVE phosphoribosylaminoimidazole-succinocarboxamide

Query: 2 GTRCPDGQ 9
G R PDG+
Sbjct: 70 GVRTPDGE 77


>sp|RPO12_METTP|DNA-DIRECTED RNA polymerase subunit Rpo12|Methanothrix thermoacetophila

Query: 1 AGTRCP 6
AG RCP
Sbjct: 19 AGVRCP 24


>sp|SYE_HALMA|GLUTAMATE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 5 CPDGQF 10
CP G+F
Sbjct: 206 CPQGEF 211




5|Sequence|21|30|PDGQFCPVAC

>sp|PRIS_THEKO|DNA primase small subunit PriS|Thermococcus kodakarensis (strain ATCC

Query: 1 PDGQFCPV 8
P GQ CP+
Sbjct: 113 PSGQVCPI 120


>sp|SYP_THEKO|PROLINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PDGQFCPV 8
P+G+ CPV
Sbjct: 459 PEGKKCPV 466


>sp|GAPOR_PYRFU|GLYCERALDEHYDE-3-PHOSPHATE:FERREDOXIN oxidoreductase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 GQFCPVAC 10
G+ CPV C
Sbjct: 334 GEPCPVVC 341


>sp|SYP_PYRAB|PROLINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 PDGQFCPV 8
P+G CPV
Sbjct: 458 PEGSRCPV 465


>sp|SYP_PYRHO|PROLINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PDGQFCPV 8
P+G CPV
Sbjct: 458 PEGSKCPV 465


>sp|TRPE2_HALMA|ANTHRANILATE synthase component 1 2|Haloarcula marismortui (strain ATCC 43049

Query: 1 PDGQFCP 7
PDG F P
Sbjct: 68 PDGAFAP 74


>sp|Y1185_METJA|UNCHARACTERIZED protein MJ1185|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GQFCPVAC 10
G+ CPV C
Sbjct: 303 GEPCPVLC 310


>sp|PSA_SULTO|PROTEASOME subunit alpha|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 PDGQFCP 7
P GQF P
Sbjct: 156 PSGQFMP 162


>sp|PSA_SULAC|PROTEASOME subunit alpha|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PDGQFCP 7
P GQF P
Sbjct: 156 PSGQFMP 162


>sp|PSA_METS5|PROTEASOME subunit alpha|Metallosphaera sedula (strain ATCC 51363

Query: 1 PDGQFCP 7
P GQF P
Sbjct: 155 PSGQFMP 161


>sp|TRPE1_HALSA|ANTHRANILATE synthase component 1 1|Halobacterium salinarum (strain ATCC

Query: 1 PDGQFCP 7
PDG F P
Sbjct: 61 PDGAFTP 67


>sp|Y1569_METJA|PUTATIVE metal transport protein MJ1569|Methanocaldococcus jannaschii

Query: 1 PDGQFCPVAC 10
PDG P+ C
Sbjct: 4 PDGYLGPITC 13


>sp|CHEB_METBU|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Methanococcoides

Query: 1 PDGQFC 6
P+G FC
Sbjct: 194 PEGNFC 199


>sp|CHEB1_METMA|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase 1|Methanosarcina mazei

Query: 1 PDGQFC 6
P+G FC
Sbjct: 200 PEGNFC 205


>sp|TFRB_METTM|FUMARATE reductase (CoM/CoB) subunit B|Methanothermobacter marburgensis

Query: 1 PDGQFC 6
PDGQ C
Sbjct: 294 PDGQVC 299




6|Sequence|26|35|CPVACCLDPG

>sp|CAS10_METJA|CRISPR system single-strand-specific deoxyribonuclease

Query: 1 CPVACCL 7
C +ACCL
Sbjct: 222 CAIACCL 228


>sp|GFCR_METHJ|TRANSCRIPTIONAL regulator GfcR|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 PVACCL 7
PVACC+
Sbjct: 168 PVACCV 173


>sp|SYK_METMP|LYSINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 CPVACC 6
CP CC
Sbjct: 93 CPQGCC 98


>sp|SYK_METMI|LYSINE--TRNA ligase|Methanococcus maripaludis (Methanococcus deltae)

Query: 1 CPVACC 6
CP CC
Sbjct: 93 CPQGCC 98


>sp|SYK_METTH|LYSINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 CPVACC 6
CP CC
Sbjct: 113 CPEGCC 118


>sp|SYK_METST|LYSINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 CPVACC 6
CP CC
Sbjct: 94 CPEGCC 99


>sp|SYK_METJA|LYSINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CPVACC 6
CP CC
Sbjct: 93 CPEGCC 98


>sp|PYRK_METAR|PROBABLE dihydroorotate dehydrogenase B (NAD(+)),|Methanocella arvoryzae

Query: 4 ACCLDP 9
+CC+DP
Sbjct: 217 SCCMDP 222


>sp|RL7A_METKA|LARGE ribosomal subunit protein eL8|Methanopyrus kandleri (strain AV19 /

Query: 4 ACCLDPG 10
AC +DPG
Sbjct: 99 ACIIDPG 105


>sp|IF2P_METJA|PROBABLE translation initiation factor IF-2|Methanocaldococcus jannaschii

Query: 1 CPVACCL 7
CP+ C L
Sbjct: 17 CPIVCVL 23


>sp|TOP1_PYRFU|DNA topoisomerase 1|Pyrococcus furiosus (strain ATCC 43587

Query: 4 ACCLDPG 10
AC +DPG
Sbjct: 123 ACGVDPG 129


>sp|Y011_PYRAR|PROTEIN Pars_0011|Pyrobaculum arsenaticum (strain DSM 13514

Query: 4 ACCLDP 9
ACC DP
Sbjct: 85 ACCQDP 90


>sp|XPD_THEAC|ATP-DEPENDENT DNA helicase XPD|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 ACCLDP 9
A CLDP
Sbjct: 343 AACLDP 348


>sp|Y227_METJA|UNCHARACTERIZED protein MJ0227|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 VACCLD 8
+ACCL+
Sbjct: 27 IACCLE 32


>sp|Y745_PYRAE|PROTEIN PAE0745|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 ACCLDP 9
ACC DP
Sbjct: 85 ACCQDP 90


>sp|Y1005_PYRIL|PROTEIN Pisl_1005|Pyrobaculum islandicum (strain DSM 4184

Query: 4 ACCLDP 9
ACC DP
Sbjct: 85 ACCQDP 90


>sp|RL7A_HYPBU|LARGE ribosomal subunit protein eL8|Hyperthermus butylicus (strain DSM

Query: 4 ACCLDPG 10
AC +DPG
Sbjct: 99 ACIIDPG 105


>sp|PYRK_METBU|PROBABLE dihydroorotate dehydrogenase B (NAD(+)),|Methanococcoides burtonii

Query: 4 ACCLDP 9
ACC+DP
Sbjct: 218 ACCMDP 223


>sp|Y441_NANEQ|PROTEIN NEQ441|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 PVACCLDP 9
P+ C LDP
Sbjct: 158 PMDCWLDP 165


>sp|PYRI_METHJ|ASPARTATE carbamoyltransferase regulatory chain|Methanospirillum hungatei

Query: 1 CPVACCL 7
CP CC+
Sbjct: 113 CPNPCCI 119




7|Sequence|31|40|CLDPGGASYS

>sp|SPEE2_HYPBU|POLYAMINE aminopropyltransferase 2|Hyperthermus butylicus (strain DSM 5456

Query: 1 CLDPGGA 7
CL PGGA
Sbjct: 186 CLRPGGA 192


>sp|XPD_THEAC|ATP-DEPENDENT DNA helicase XPD|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 CLDPGG 6
CLDP G
Sbjct: 345 CLDPSG 350


>sp|ECFA_METST|ENERGY-COUPLING factor transporter ATP-binding protein|Methanosphaera stadtmanae

Query: 2 LDPGGAS 8
LDP GAS
Sbjct: 171 LDPNGAS 177


>sp|RL7A_STAMF|LARGE ribosomal subunit protein eL8|Staphylothermus marinus (strain ATCC

Query: 2 LDPGGA 7
+DPGGA
Sbjct: 103 IDPGGA 108


>sp|ACDB_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit beta|Archaeoglobus fulgidus

Query: 2 LDPGGASYS 10
LDP G YS
Sbjct: 263 LDPIGGEYS 271


>sp|PANB_HYPBU|3-METHYL-2-OXOBUTANOATE hydroxymethyltransferase|Hyperthermus butylicus (strain DSM 5456

Query: 5 GGASYS 10
GGASYS
Sbjct: 119 GGASYS 124


>sp|SURE_PYRAR|5'-NUCLEOTIDASE SurE|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 LDPGGASY 9
+DP G+SY
Sbjct: 200 VDPRGSSY 207


>sp|GCST_HALSA|PROBABLE aminomethyltransferase|Halobacterium salinarum (strain ATCC

Query: 2 LDPGGASYS 10
LDPG A Y+
Sbjct: 78 LDPGDAQYA 86


>sp|GCST_HALS3|PROBABLE aminomethyltransferase|Halobacterium salinarum (strain ATCC 29341

Query: 2 LDPGGASYS 10
LDPG A Y+
Sbjct: 78 LDPGDAQYA 86


>sp|GCST_HALMA|PROBABLE aminomethyltransferase|Haloarcula marismortui (strain ATCC 43049

Query: 2 LDPGGASY 9
LDPG A Y
Sbjct: 78 LDPGEAQY 85


>sp|PSB_HALSA|PROTEASOME subunit beta|Halobacterium salinarum (strain ATCC 700922

Query: 2 LDPGGASYS 10
LDP G+S S
Sbjct: 161 LDPAGSSMS 169


>sp|PSB_HALS3|PROTEASOME subunit beta|Halobacterium salinarum (strain ATCC 29341

Query: 2 LDPGGASYS 10
LDP G+S S
Sbjct: 161 LDPAGSSMS 169


>sp|DNAJ_HALSA|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 700922

Query: 1 CLDPGGASY 9
C D GG+ Y
Sbjct: 165 CADCGGSGY 173


>sp|DNAJ_HALS3|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 29341

Query: 1 CLDPGGASY 9
C D GG+ Y
Sbjct: 165 CADCGGSGY 173




8|Sequence|36|45|GASYSCCRPL

>sp|PURO_META3|IMP cyclohydrolase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 ASYSCCR 8
++Y CCR
Sbjct: 149 STYECCR 155


>sp|METE_METTM|METHIONINE synthase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 2 ASYSCCRP 9
SY CRP
Sbjct: 28 GSYDACRP 35


>sp|MER_METTM|5,10-METHYLENETETRAHYDROMETHANOPTERIN reductase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 2 ASYSCC 7
A+Y+CC
Sbjct: 202 AAYTCC 207


>sp|MER_METTH|5,10-METHYLENETETRAHYDROMETHANOPTERIN reductase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 ASYSCC 7
A+Y+CC
Sbjct: 202 AAYTCC 207


>sp|Y1959_METB6|UPF0179 protein Mboo_1959|Methanoregula boonei (strain DSM 21154

Query: 3 SYSCCRP 9
SYS CRP
Sbjct: 106 SYSLCRP 112


>sp|MUTS_NATPD|DNA mismatch repair protein MutS|Natronomonas pharaonis (strain ATCC

Query: 1 GASYSCCRP 9
A Y CRP
Sbjct: 573 AAQYDYCRP 581


>sp|MUTS2_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 1 GASYSCCRP 9
A Y CRP
Sbjct: 590 AAQYDYCRP 598


>sp|MTAP_AERPE|S-METHYL-5'-THIOADENOSINE phosphorylase|Aeropyrum pernix (strain ATCC 700893

Query: 5 SCCRPL 10
SCCR L
Sbjct: 265 SCCRAL 270




9|Sequence|41|50|CCRPLLDKWP

>sp|MTRB_METAC|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit B|Methanosarcina acetivorans (strain

Query: 3 RPLLDKWP 10
+PLL+ WP
Sbjct: 58 KPLLNSWP 65


>sp|GLCD1_VULM7|GLUCOSE 1-dehydrogenase 1|Vulcanisaeta moutnovskia (strain 768-28)

Query: 3 RPLLDKW 9
RPLLD W
Sbjct: 277 RPLLDDW 283


>sp|MTRB_METMA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit B|Methanosarcina mazei (strain ATCC

Query: 3 RPLLDKWP 10
+PLL+ WP
Sbjct: 58 KPLLNTWP 65


>sp|MTRB_METBF|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit B|Methanosarcina barkeri (strain

Query: 4 PLLDKWP 10
PLL+ WP
Sbjct: 59 PLLNSWP 65


>sp|AATA_METLZ|A-TYPE ATP synthase subunit A|Methanocorpusculum labreanum (strain ATCC

Query: 4 PLLDKWP 10
P++ KWP
Sbjct: 186 PMMQKWP 192


>sp|RL30_AERPE|LARGE ribosomal subunit protein uL30|Aeropyrum pernix (strain ATCC

Query: 3 RPLLDKW 9
+PL DKW
Sbjct: 79 KPLTDKW 85


>sp|SYV_NANEQ|VALINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 CRPLLDKW 9
CR +LD W
Sbjct: 102 CRQILDSW 109


>sp|CDPAS_THEVO|CDP-ARCHAEOL synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 5 LLDKWP 10
LLD+WP
Sbjct: 124 LLDQWP 129


>sp|CDPAS_THEAC|CDP-ARCHAEOL synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 LLDKWP 10
LLD+WP
Sbjct: 117 LLDQWP 122


>sp|CDPAS_PICTO|CDP-ARCHAEOL synthase|Picrophilus torridus (strain ATCC 700027

Query: 5 LLDKWP 10
LLD+WP
Sbjct: 124 LLDQWP 129


>sp|AATC_METS3|A-TYPE ATP synthase subunit C|Methanobrevibacter smithii (strain ATCC

Query: 3 RPLLDKWP 10
RP+LD +P
Sbjct: 40 RPILDIYP 47


>sp|THIC_IGNH4|PHOSPHOMETHYLPYRIMIDINE synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 CCRPLLDKW 9
C LLDKW
Sbjct: 418 CVFLLLDKW 426


>sp|MOBA_METMA|PROBABLE molybdenum cofactor guanylyltransferase|Methanosarcina mazei

Query: 4 PLLDKWP 10
P+LDK+P
Sbjct: 73 PVLDKFP 79


>sp|AATA_METB6|A-TYPE ATP synthase subunit A|Methanoregula boonei (strain DSM 21154

Query: 4 PLLDKWP 10
P++ +WP
Sbjct: 191 PMIQRWP 197


>sp|TSGAD_HALVD|PUTATIVE ABC transporter glucose-binding protein|Haloferax volcanii (strain

Query: 4 PLLDKW 9
P+LD+W
Sbjct: 329 PMLDEW 334


>sp|YBP2_ACIAM|UNCHARACTERIZED protein in bps2 5'region|Acidianus ambivalens (Desulfurolobus

Query: 3 RPLLDKW 9
RP++ KW
Sbjct: 66 RPIMGKW 72


>sp|AATC_METTH|A-TYPE ATP synthase subunit C|Methanothermobacter thermautotrophicus

Query: 3 RPLLDKWP 10
RP+LD +P
Sbjct: 41 RPILDLFP 48


>sp|DMD_SACS2|DIPHOSPHOMEVALONATE decarboxylase|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 LLDKWP 10
+LD WP
Sbjct: 249 ILDSWP 254


>sp|DP2L_CENSY|DNA polymerase II large subunit|Cenarchaeum symbiosum (strain A)

Query: 2 CRPLLDK 8
C+P+L+K
Sbjct: 506 CKPVLEK 512


>sp|XYLS_SACS2|ALPHA-XYLOSIDASE solfataricus (strain ATCC 35092

Query: 4 PLLDKW 9
PLL KW
Sbjct: 215 PLLPKW 220


>sp|FSX1_HALSH|FUSEXIN 1|Haloplanus natans (strain DSM 17983

Query: 5 LLDKW 9
LLDKW
Sbjct: 276 LLDKW 280


>sp|DHE2_HALSI|NAD-SPECIFIC glutamate dehydrogenase A|Halobacterium salinarum (Halobacterium

Query: 5 LLDKW 9
LLDKW
Sbjct: 249 LLDKW 253


>sp|SYK_METTH|LYSINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 RPLLDKW 9
RPL D W
Sbjct: 178 RPLRDDW 184


>sp|RPO10_AERPE|DNA-DIRECTED RNA polymerase subunit Rpo10|Aeropyrum pernix (strain ATCC 700893

Query: 1 CCRPLLDKWP 10
C RPL WP
Sbjct: 10 CGRPLGHLWP 19




10|Sequence|46|55|LDKWPTTLSR

>sp|CDPAS_THEVO|CDP-ARCHAEOL synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 LDKWPTTL 8
LD+WP L
Sbjct: 125 LDQWPFAL 132


>sp|CDPAS_THEAC|CDP-ARCHAEOL synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 LDKWPTTL 8
LD+WP L
Sbjct: 118 LDQWPFAL 125


>sp|CDPAS_PICTO|CDP-ARCHAEOL synthase|Picrophilus torridus (strain ATCC 700027

Query: 1 LDKWPTTL 8
LD+WP L
Sbjct: 125 LDQWPFVL 132


>sp|SYL2_SULTO|LEUCINE--TRNA ligase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LDKWPT 6
L+KWPT
Sbjct: 785 LEKWPT 790


>sp|OGG1_METJA|8-OXOGUANINE DNA glycosylase/AP lyase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 LDKWPTTLSR 10
+D+ P TLSR
Sbjct: 160 IDEIPKTLSR 169


>sp|RPO1C_HALMA|DNA-DIRECTED RNA polymerase subunit Rpo1C|Haloarcula marismortui (strain ATCC

Query: 1 LDKWPT 6
L++WPT
Sbjct: 167 LERWPT 172


>sp|WTPA_PYRHO|MOLYBDATE/TUNGSTATE-BINDING protein WtpA|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 DKWPTTLSR 10
DKW LSR
Sbjct: 134 DKWYEILSR 142


>sp|TMCA_HALVD|TRNA(MET) cytidine acetyltransferase TmcA|Haloferax volcanii (strain ATCC

Query: 1 LDKWPT 6
LD WPT
Sbjct: 120 LDDWPT 125


>sp|SYE_PYRIL|GLUTAMATE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 DKWPTTL 8
++WP TL
Sbjct: 70 ERWPETL 76




11|Sequence|51|60|TTLSRHLGGP

>sp|RNP3_METMA|RIBONUCLEASE P protein component 3|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 TTLSRHLG 8
++LSRHLG
Sbjct: 25 SSLSRHLG 32


>sp|CBIG_METJA|PROBABLE cobalt-precorrin-5A hydrolase|Methanocaldococcus jannaschii

Query: 3 LSRHLGG 9
LS HLGG
Sbjct: 87 LSNHLGG 93


>sp|ENO_METKA|ENOLASE kandleri (strain AV19 /

Query: 3 LSRHLGGP 10
L R+LGGP
Sbjct: 129 LYRYLGGP 136


>sp|Y009_METJA|UNCHARACTERIZED protein MJ0009|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 LSRHLGG 9
L++HLGG
Sbjct: 149 LAKHLGG 155


>sp|Y2387_METMA|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina mazei (strain

Query: 1 TTLSRHLGG 9
TTL +HL G
Sbjct: 297 TTLVKHLNG 305


>sp|Y731_ARCFU|PUTATIVE ABC transporter ATP-binding protein|Archaeoglobus fulgidus

Query: 1 TTLSRHLGG 9
TTL +HL G
Sbjct: 41 TTLLKHLNG 49


>sp|HPCAS_METS5|3-HYDROXYPROPIONYL-COENZYME A synthetase|Metallosphaera sedula (strain ATCC 51363

Query: 3 LSRHLGGP 10
+ RHL GP
Sbjct: 86 VDRHLNGP 93


>sp|DTDA_KORCO|D-AMINOACYL-TRNA deacylase|Korarchaeum cryptofilum (strain OPF8)

Query: 3 LSRHLGGP 10
LSRH G P
Sbjct: 64 LSRHSGTP 71


>sp|HIS7_ARCFU|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 TLSRHLG 8
TLSRH G
Sbjct: 36 TLSRHSG 42


>sp|GSA1_CENSY|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase 1|Cenarchaeum symbiosum (strain A)

Query: 1 TTLSRHLGG 9
TTL++ LGG
Sbjct: 254 TTLAKALGG 262




12|Sequence|56|65|HLGGPCQVDA

>sp|SYFA_METMA|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 HLGGPCQVDA 10
HLG CQ+ A
Sbjct: 289 HLGSTCQIPA 298


>sp|FRHB_METVO|COENZYME F420 hydrogenase subunit beta|Methanococcus voltae

Query: 2 LGGPCQVDA 10
+G PCQV A
Sbjct: 100 VGTPCQVQA 108


>sp|PUS10_METTM|TRNA pseudouridine synthase Pus10|Methanothermobacter marburgensis

Query: 1 HLGGPCQV 8
HL GPC V
Sbjct: 50 HLEGPCLV 57


>sp|FRHB_METJA|COENZYME F420 hydrogenase subunit beta|Methanocaldococcus jannaschii (strain

Query: 2 LGGPCQVDA 10
+G PCQV A
Sbjct: 105 VGTPCQVRA 113


>sp|YIH50_HALSA|UNCHARACTERIZED protein in transposable element|Halobacterium salinarum (strain

Query: 1 HLGGPCQVD 9
HL GP ++D
Sbjct: 120 HLEGPVEID 128


>sp|SYFA_METAC|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 HLGGPCQVDA 10
HLG CQ+ A
Sbjct: 286 HLGSICQLPA 295


>sp|MOAC_PYRAE|PROBABLE cyclic pyranopterin monophosphate synthase|Pyrobaculum aerophilum

Query: 2 LGGPC 6
LGGPC
Sbjct: 170 LGGPC 174


>sp|GGGPS_IGNH4|GERANYLGERANYLGLYCERYL phosphate synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 GGPCQV 8
G PCQV
Sbjct: 78 GSPCQV 83


>sp|Y187_THEON|UPF0292 protein TON_0187|Thermococcus onnurineus (strain NA1)

Query: 3 GGPCQVDA 10
G PC+VD+
Sbjct: 87 GYPCRVDS 94


>sp|PUS10_AERPE|TRNA pseudouridine synthase Pus10|Aeropyrum pernix (strain ATCC 700893

Query: 3 GGPCQV 8
GGPC V
Sbjct: 92 GGPCAV 97


>sp|Y1777_THEGJ|UPF0292 protein TGAM_1777|Thermococcus gammatolerans (strain DSM 15229

Query: 3 GGPCQVD 9
G PC+VD
Sbjct: 87 GYPCRVD 93


>sp|NUCS1_HALSA|ENDONUCLEASE NucS 1|Halobacterium salinarum (strain ATCC 700922

Query: 3 GGPCQVDA 10
GGP VDA
Sbjct: 76 GGPVTVDA 83


>sp|Y1066_METJA|UNCHARACTERIZED protein MJ1066|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HLGGPCQVD 9
+ G PC++D
Sbjct: 132 YAGHPCEMD 140




13|Sequence|61|70|CQVDAHCSAG

>sp|MES_EURX9|METALLOPTERIN-DEPENDENT ergothioneine synthase|Euryarchaeota archaeon (strain ADurb.Bin009)

Query: 4 DAHCS 8
DAHCS
Sbjct: 1088 DAHCS 1092


>sp|Y1582_METJA|UNCHARACTERIZED metal-dependent hydrolase MJ1582|Methanocaldococcus jannaschii

Query: 3 VDAHC 7
VDAHC
Sbjct: 7 VDAHC 11


>sp|ADEC_METBU|ADENINE deaminase|Methanococcoides burtonii (strain DSM 6242

Query: 3 VDAHCSA 9
VD HC A
Sbjct: 203 VDGHCPA 209


>sp|AATA_THEAC|A-TYPE ATP synthase subunit A|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 QVDAHCS 8
++DA+CS
Sbjct: 679 EIDAYCS 685


>sp|PYRH_HALSA|URIDYLATE kinase|Halobacterium salinarum (strain ATCC 700922

Query: 2 QVDAHCSA 9
QVDAH A
Sbjct: 20 QVDAHADA 27


>sp|PYRH_HALS3|URIDYLATE kinase|Halobacterium salinarum (strain ATCC 29341

Query: 2 QVDAHCSA 9
QVDAH A
Sbjct: 20 QVDAHADA 27




14|Sequence|66|75|HCSAGHSCIF

>sp|Y103_METJA|UNCHARACTERIZED protein MJ0103|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HCSAGHSCIF 10
HC +CIF
Sbjct: 115 HCGCNLNCIF 124


>sp|IDI2_NATPD|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 CSAGHSCI 9
C+A H C+
Sbjct: 265 CAAEHDCV 272


>sp|COFE_METMA|COENZYME F420:L-glutamate ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 AGHSCI 9
AGH+C+
Sbjct: 99 AGHTCV 104


>sp|COFE_METBF|COENZYME F420:L-glutamate ligase|Methanosarcina barkeri (strain Fusaro /

Query: 4 AGHSCI 9
AGH+C+
Sbjct: 99 AGHTCV 104


>sp|COFE_METAC|COENZYME F420:L-glutamate ligase|Methanosarcina acetivorans (strain ATCC

Query: 4 AGHSCI 9
AGH+C+
Sbjct: 99 AGHTCV 104


>sp|Y1154_METLZ|UPF0173 metal-dependent hydrolase Mlab_1154|Methanocorpusculum labreanum

Query: 4 AGHSC 8
AGHSC
Sbjct: 6 AGHSC 10


>sp|LYSJ_AERPE|PUTATIVE [LysW]-aminoadipate semialdehyde/glutamate semialdehyde

Query: 2 CSAGHSCIF 10
C AGH F
Sbjct: 37 CHAGHGAAF 45


>sp|BRZ_HALUD|TRANSCRIPTIONAL regulator Brz|Halorhabdus utahensis (strain DSM 12940

Query: 2 CSAGHSC 8
CS GH C
Sbjct: 48 CSNGHEC 54


>sp|ACDA_METJA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanocaldococcus

Query: 2 CSAGHS 7
C AGHS
Sbjct: 116 CHAGHS 121




15|Sequence|71|80|HSCIFTVSGT

>sp|3MGH_METMJ|PUTATIVE 3-methyladenine DNA glycosylase|Methanoculleus marisnigri (strain

Query: 1 HSCIFTVSGT 10
H+C+ V+GT
Sbjct: 78 HTCVNVVTGT 87


>sp|Y635_METJA|UNCHARACTERIZED protein MJ0635|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 SCIFTVSGT 10
+C++ VSGT
Sbjct: 192 ACVYEVSGT 200


>sp|GGR_METMA|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 SCIFTVSGT 10
SCIF+ GT
Sbjct: 72 SCIFSPDGT 80


>sp|DAPB_METMP|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanococcus maripaludis (strain DSM 14266

Query: 1 HSCIFTVSG 9
HS IFT G
Sbjct: 219 HSVIFTTEG 227


>sp|DP2L_CENSY|DNA polymerase II large subunit|Cenarchaeum symbiosum (strain A)

Query: 3 CIFTVSGT 10
C+F V GT
Sbjct: 592 CLFPVGGT 599


>sp|TOP1_METTH|DNA topoisomerase 1|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 HSCIFTVSGT 10
H+C + + GT
Sbjct: 110 HACDYDIEGT 119


>sp|RS5_METVS|SMALL ribosomal subunit protein uS5|Methanococcus vannielii (strain ATCC

Query: 1 HSCIFTVSGT 10
HS FT GT
Sbjct: 135 HSIPFTAKGT 144


>sp|RS5_METVA|SMALL ribosomal subunit protein uS5|Methanococcus vannielii

Query: 1 HSCIFTVSGT 10
HS FT GT
Sbjct: 135 HSIPFTAKGT 144


>sp|HCP_METVS|HYDROXYLAMINE reductase|Methanococcus vannielii (strain ATCC 35089

Query: 1 HSCIFTVSGT 10
H C T+ GT
Sbjct: 4 HQCQETIKGT 13




16|Sequence|76|85|TVSGTSSCCP

***** No hits found ******


17|Sequence|81|90|SSCCPFPEAV

>sp|HDRD_METTT|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina thermophila

Query: 1 SSCCPF 6
SSCCPF
Sbjct: 370 SSCCPF 375


>sp|HDRD_METMA|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina mazei (strain

Query: 1 SSCCPF 6
SSCCPF
Sbjct: 370 SSCCPF 375


>sp|HDRB2_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B2|Methanococcus

Query: 1 SSCCPFP 7
+SCCP P
Sbjct: 39 ASCCPAP 45


>sp|HDRB_METTM|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 1 SSCCPFP 7
+SCCP P
Sbjct: 39 ASCCPAP 45


>sp|HDRB1_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 1 SSCCPFP 7
+SCCP P
Sbjct: 39 ASCCPAP 45


>sp|HDRB1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B1|Methanococcus

Query: 1 SSCCPFP 7
+SCCP P
Sbjct: 44 ASCCPAP 50


>sp|SYK_METMJ|LYSINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 SCCPFPE 8
S CP PE
Sbjct: 138 SVCPLPE 144


>sp|HDRB2_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 1 SSCCPFP 7
+SCCP P
Sbjct: 39 ASCCPAP 45


>sp|HDRB_METKA|COB--COM heterodisulfide reductase subunit B|Methanopyrus kandleri (strain

Query: 1 SSCCPFP 7
+SCCP P
Sbjct: 41 ASCCPAP 47


>sp|HDRB_METTH|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 3 CCPFP 7
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB2_METAC|FERREDOXIN/F(420)H(2)-DEPENDENT CoB-CoM heterodisulfide reductase subunit|Methanosarcina

Query: 1 SSCCPFP 7
+SCCP P
Sbjct: 40 ASCCPAP 46




18|Sequence|86|95|FPEAVACGDG

>sp|CARB_PYRAE|CARBAMOYL phosphate synthase large chain|Pyrobaculum aerophilum (strain

Query: 2 PEAVACGDG 10
P+A+ACG G
Sbjct: 79 PDAIACGFG 87


>sp|BRIX_PYRAE|PROBABLE Brix domain-containing ribosomal biogenesis|Pyrobaculum

Query: 3 EAVACG 8
EAVACG
Sbjct: 49 EAVACG 54


>sp|F16PA_METLZ|FRUCTOSE-1,6-BISPHOSPHATASE class 1|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 PEAVACGDG 10
PE CG G
Sbjct: 199 PEGTLCGSG 207


>sp|Y164_METJA|UNCHARACTERIZED protein MJ0164|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FPEAVACGD 9
+PE AC D
Sbjct: 104 YPEIFACKD 112


>sp|SYA_THEPD|ALANINE--TRNA ligase|Thermofilum pendens (strain DSM 2475

Query: 2 PEAVACGD 9
PE CGD
Sbjct: 34 PERKVCGD 41


>sp|WTPC_THEKO|MOLYBDATE/TUNGSTATE import ATP-binding protein WtpC|Thermococcus kodakarensis (strain

Query: 1 FPEAVACGD 9
F EAV+ GD
Sbjct: 192 FEEAVSLGD 200


>sp|DAPF_METM6|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain C6 /

Query: 3 EAVACGDG 10
E +ACG G
Sbjct: 216 ETLACGTG 223


>sp|DAPF_METM7|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain C7 /

Query: 3 EAVACGDG 10
E +ACG G
Sbjct: 216 ETLACGTG 223


>sp|DAPF_METMP|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain DSM 14266

Query: 3 EAVACGDG 10
E +ACG G
Sbjct: 216 ETLACGTG 223


>sp|TRPC_HALVD|INDOLE-3-GLYCEROL phosphate synthase|Haloferax volcanii (strain ATCC 29605

Query: 1 FPEAVA 6
FPEAVA
Sbjct: 36 FPEAVA 41


>sp|DAPF_METM5|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain C5 /

Query: 3 EAVACGDG 10
E +ACG G
Sbjct: 216 ETLACGTG 223




19|Sequence|91|100|ACGDGHHCCP

>sp|SIHH_METMP|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanococcus maripaludis (strain DSM 14266

Query: 1 ACGDGHHC 8
AC DGH C
Sbjct: 339 ACADGHPC 346


>sp|SIHH_METJA|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ACGDGHHC 8
AC DGH C
Sbjct: 339 ACADGHPC 346


>sp|HIS3_METST|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 ACGDGHHCC 9
AC GH+ C
Sbjct: 93 ACHTGHYSC 101


>sp|ACDA1_METKA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanopyrus kandleri

Query: 1 ACGDGHHCCP 10
CGD CP
Sbjct: 392 GCGDCERVCP 401


>sp|NIKR_HALWD|PUTATIVE nickel-responsive regulator|Haloquadratum walsbyi (strain DSM

Query: 5 GHHC 8
GHHC
Sbjct: 93 GHHC 96


>sp|NIKR_HALSA|PUTATIVE nickel-responsive regulator|Halobacterium salinarum (strain ATCC

Query: 5 GHHC 8
GHHC
Sbjct: 93 GHHC 96


>sp|NIKR_HALS3|PUTATIVE nickel-responsive regulator|Halobacterium salinarum (strain ATCC

Query: 5 GHHC 8
GHHC
Sbjct: 93 GHHC 96


>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 5 GHHC 8
GHHC
Sbjct: 353 GHHC 356


>sp|CSD_METTH|PROBABLE cysteine desulfurase|Methanothermobacter thermautotrophicus (strain

Query: 5 GHHC 8
GHHC
Sbjct: 353 GHHC 356


>sp|ACDA_METBU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanococcoides

Query: 1 ACGDGHHCCP 10
ACG + CP
Sbjct: 453 ACGRCEYACP 462


>sp|HIS3_HALWD|PHOSPHORIBOSYL-AMP cyclohydrolase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 ACGDGHHCC 9
AC GH C
Sbjct: 102 ACHTGHQSC 110


>sp|Y811_METTH|UPF0305 protein MTH_811|Methanothermobacter thermautotrophicus (strain ATCC

Query: 4 DGHHCCP 10
DG H CP
Sbjct: 125 DGVHYCP 131


>sp|FPOF_METMA|F(420)H(2) dehydrogenase subunit F|Methanosarcina mazei (strain ATCC BAA-159

Query: 6 HHCC 9
HHCC
Sbjct: 256 HHCC 259


>sp|GLYA_KORCO|SERINE hydroxymethyltransferase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 ACGDGHHC 8
A G GH C
Sbjct: 332 ALGGGHRC 339


>sp|WECC_PYRHO|UDP-N-ACETYL-D-MANNOSAMINE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 GDGHHCCP 10
G G HC P
Sbjct: 253 GVGGHCLP 260


>sp|SYK_THEAC|LYSINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 ACGDGHH 7
AC GHH
Sbjct: 190 ACKCGHH 196


>sp|RAD50_THEAC|DNA double-strand break repair Rad50|Thermoplasma acidophilum (strain

Query: 4 DGHHCCP 10
+GH+ CP
Sbjct: 450 EGHNKCP 456


>sp|SIHH_METMA|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 ACGDGH 6
A GDGH
Sbjct: 337 AAGDGH 342


>sp|SIHH_METAC|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 ACGDGH 6
A GDGH
Sbjct: 337 AAGDGH 342


>sp|Y138_METJA|PUTATIVE glutamine amidotransferase-like protein MJ0138|Methanocaldococcus

Query: 3 GDGHHC 8
G+G HC
Sbjct: 127 GEGFHC 132


>sp|RPO3_ARCFU|DNA-DIRECTED RNA polymerase subunit Rpo3|Archaeoglobus fulgidus (strain ATCC

Query: 1 ACGDGHHCCP 10
CGD CP
Sbjct: 175 GCGDCIEACP 184


>sp|YGY3_HALL2|UNCHARACTERIZED 50.6 kDa protein in|Haloferax lucentense (strain DSM 14919

Query: 3 GDGHHC 8
GDGHH
Sbjct: 232 GDGHHL 237


>sp|BRZ_HALUD|TRANSCRIPTIONAL regulator Brz|Halorhabdus utahensis (strain DSM 12940

Query: 1 ACGDGHHC 8
AC +GH C
Sbjct: 47 ACSNGHEC 54


>sp|HIS3_METMJ|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 ACGDGHHCC 9
AC GH C
Sbjct: 87 ACHTGHASC 95




20|Sequence|96|105|HHCCPRGFHC

>sp|AOCD_METKA|ORNITHINE cyclodeaminase|Methanopyrus kandleri (strain AV19 /

Query: 4 CPRGFH 9
CPRGF+
Sbjct: 94 CPRGFY 99


>sp|LIPA_PYRAE|LIPOYL synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 CPRGFHC 10
CP FHC
Sbjct: 37 CPNIFHC 43


>sp|PYRI_METLZ|ASPARTATE carbamoyltransferase regulatory chain|Methanocorpusculum labreanum

Query: 5 PRGFHC 10
PRGF C
Sbjct: 133 PRGFRC 138


>sp|Y686_METJA|UNCHARACTERIZED protein MJ0686|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HHCCPRGF 8
HH P+GF
Sbjct: 462 HHIFPKGF 469


>sp|CBIX_HALSA|PROBABLE sirohydrochlorin cobaltochelatase|Halobacterium salinarum (strain

Query: 1 HHCCPRGFH 9
H+C P G H
Sbjct: 113 HYCGPVGTH 121


>sp|OTC_METKA|ORNITHINE carbamoyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 2 HCCPRGFHC 10
H P G+ C
Sbjct: 185 HAVPEGYEC 193


>sp|FPRA_METTM|COENZYME F420H(2) oxidase|Methanothermobacter marburgensis (strain ATCC

Query: 1 HHCCPR 6
H CCP+
Sbjct: 175 HLCCPQ 180


>sp|OTC_PICTO|ORNITHINE carbamoyltransferase|Picrophilus torridus (strain ATCC 700027

Query: 4 CPRGF 8
CP+GF
Sbjct: 176 CPKGF 180


>sp|LIPA_METAR|LIPOYL synthase|Methanocella arvoryzae (strain DSM 22066

Query: 4 CPRGFHC 10
CP F C
Sbjct: 43 CPNAFEC 49


>sp|CYAS_METTP|CYSTEATE synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 4 CPRGFH 9
CP G H
Sbjct: 289 CPEGMH 294


>sp|Y661_METJA|UNCHARACTERIZED protein MJ0661|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HHCCPRGFHC 10
+HC GF C
Sbjct: 26 YHCIKCGFCC 35


>sp|NADA_METKA|QUINOLINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 HHCCP 5
H CCP
Sbjct: 155 HGCCP 159


>sp|Y1250_THEVO|UPF0179 protein TV1250|Thermoplasma volcanium (strain ATCC 51530

Query: 4 CPRGF 8
CP+GF
Sbjct: 131 CPKGF 135




21|Sequence|101|110|RGFHCSADGR

>sp|SYM_METKA|METHIONINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 RGFHCSADGR 10
RG HC A GR
Sbjct: 155 RGDHCEACGR 164


>sp|AGLUS_ARCFU|ARCHAEAL glutamate synthase [NADPH]|Archaeoglobus fulgidus (strain ATCC

Query: 2 GFHCSAD 8
GF CSAD
Sbjct: 393 GFRCSAD 399


>sp|Y339_METJA|UNCHARACTERIZED protein MJ0339|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 FHCSAD 8
FHC AD
Sbjct: 43 FHCEAD 48


>sp|DAPF_METJA|DIAMINOPIMELATE epimerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RGFHCSADG 9
RGF ADG
Sbjct: 39 RGFSVGADG 47


>sp|DAPF_METTH|DIAMINOPIMELATE epimerase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 RGFHCSADG 9
RGF ADG
Sbjct: 40 RGFSVGADG 48


>sp|DAPF_META3|DIAMINOPIMELATE epimerase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 RGFHCSADG 9
RGF ADG
Sbjct: 41 RGFSIGADG 49


>sp|Y138_METJA|PUTATIVE glutamine amidotransferase-like protein MJ0138|Methanocaldococcus

Query: 2 GFHCSADG 9
GFHC G
Sbjct: 129 GFHCHTYG 136


>sp|GATA_METBU|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanococcoides burtonii (strain DSM

Query: 2 GFHCSADG 9
G+ C++DG
Sbjct: 37 GYTCTSDG 44


>sp|SYI_METMJ|ISOLEUCINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 GFHCSADGR 10
GF ADGR
Sbjct: 582 GFALDADGR 590


>sp|SYI_METHJ|ISOLEUCINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 GFHCSADGR 10
GF ADGR
Sbjct: 582 GFALDADGR 590


>sp|CAS3_HALVD|CRISPR-ASSOCIATED nuclease/helicase Cas3|Haloferax volcanii (strain ATCC 29605

Query: 3 FHCSADGR 10
FH SAD R
Sbjct: 542 FHLSADER 549


>sp|FAU1_NATPD|PROBABLE ribonuclease FAU-1|Natronomonas pharaonis (strain ATCC 35678

Query: 4 HCSADG 9
+CSADG
Sbjct: 383 YCSADG 388




22|Sequence|106|115|SADGRSCFQR

>sp|RIO2_METJA|RIO-TYPE serine/threonine-protein kinase Rio2|Methanocaldococcus jannaschii

Query: 4 GRSCFQR 10
GR+CF R
Sbjct: 98 GRTCFTR 104


>sp|HTPX_METTH|PROTEASE HtpX homolog|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 ADGRSCFQR 10
ADGR C R
Sbjct: 121 ADGRVCVTR 129


>sp|METK_METST|S-ADENOSYLMETHIONINE synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 SADGRSCFQR 10
SAD R FQR
Sbjct: 143 SADLRDVFQR 152


>sp|RADB_ARCFU|DNA repair and recombination protein|Archaeoglobus fulgidus (strain

Query: 3 DGRSCFQR 10
+G+SCF R
Sbjct: 206 EGKSCFYR 213


>sp|Y898_METM5|PUTATIVE HTH-type transcriptional regulatory protein|Methanococcus

Query: 4 GRSCF 8
GRSCF
Sbjct: 25 GRSCF 29


>sp|Y678_METMP|PUTATIVE HTH-type transcriptional regulatory protein|Methanococcus

Query: 4 GRSCF 8
GRSCF
Sbjct: 25 GRSCF 29


>sp|Y210_METM6|PUTATIVE HTH-type transcriptional regulatory protein|Methanococcus

Query: 4 GRSCF 8
GRSCF
Sbjct: 25 GRSCF 29


>sp|Y1702_METM7|PUTATIVE HTH-type transcriptional regulatory protein|Methanococcus

Query: 4 GRSCF 8
GRSCF
Sbjct: 25 GRSCF 29


>sp|Y1514_METVS|PUTATIVE HTH-type transcriptional regulatory protein|Methanococcus

Query: 4 GRSCF 8
GRSCF
Sbjct: 25 GRSCF 29


>sp|Y1164_METJA|PUTATIVE HTH-type transcriptional regulatory protein|Methanocaldococcus

Query: 4 GRSCF 8
GRSCF
Sbjct: 28 GRSCF 32


>sp|FTTA_METMA|TRANSCRIPTION termination factor FttA|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 GRSCF 8
GRSCF
Sbjct: 193 GRSCF 197




23|Sequence|111|120|SCFQRSGNNS

>sp|TF2B_CALMQ|TRANSCRIPTION initiation factor IIB|Caldivirga maquilingensis (strain ATCC

Query: 3 FQRSGNN 9
F+R GNN
Sbjct: 26 FRREGNN 32




24|Sequence|116|125|SGNNSVGAIQ

>sp|CFBD_METJA|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanocaldococcus

Query: 1 SGNNSVGAIQ 10
SG+N++GAI+
Sbjct: 123 SGDNTIGAIK 132


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 2 GNNSVGAIQ 10
G N +GAIQ
Sbjct: 563 GENIIGAIQ 571


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 2 GNNSVGAIQ 10
G N +GAIQ
Sbjct: 563 GENIIGAIQ 571




25|Sequence|121|130|VGAIQCPDSQ

>sp|GATA_ARCFU|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Archaeoglobus fulgidus (strain ATCC

Query: 2 GAIQCPDS 9
G+I+CP S
Sbjct: 164 GSIRCPAS 171


>sp|PURL_METTP|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanothrix thermoacetophila (strain DSM

Query: 2 GAIQCPD 8
GA+Q PD
Sbjct: 250 GAVQIPD 256




26|Sequence|126|135|CPDSQFECPD

>sp|GSA_METVS|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus vannielii (strain ATCC 35089

Query: 2 PDSQFEC 8
P SQFEC
Sbjct: 395 PPSQFEC 401


>sp|GSA_METTH|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 PDSQFEC 8
P SQFEC
Sbjct: 386 PPSQFEC 392


>sp|GSA_METJA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PDSQFEC 8
P SQFEC
Sbjct: 393 PPSQFEC 399


>sp|GSA_METS3|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 PDSQFEC 8
P SQFEC
Sbjct: 386 PPSQFEC 392


>sp|RIBL_PYRHO|FAD synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 PDSQFECPD 10
PD F+C D
Sbjct: 99 PDQDFDCED 107


>sp|ATGT_SACS2|TRNA-GUANINE(15) transglycosylase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 PDSQFECPD 10
P SQFE P+
Sbjct: 450 PLSQFEIPN 458


>sp|Y078_METJA|UNCHARACTERIZED protein MJ0078|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 DSQFEC 8
DS+FEC
Sbjct: 103 DSEFEC 108


>sp|SYM_META3|METHIONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 5 QFECPD 10
QF CPD
Sbjct: 125 QFYCPD 130


>sp|SYFB_THEKO|PHENYLALANINE--TRNA ligase beta subunit|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 PDSQFECPD 10
PD + E PD
Sbjct: 269 PDFEIETPD 277


>sp|RIBL_PYRAB|FAD synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 PDSQFEC 8
PD F+C
Sbjct: 99 PDQDFDC 105


>sp|FSX1_HALS0|FUSEXIN 1|Haloferax sp. (strain Q22)

Query: 3 DSQFECPD 10
D Q+EC D
Sbjct: 514 DVQYECRD 521


>sp|ADEC_METB6|ADENINE deaminase|Methanoregula boonei (strain DSM 21154

Query: 2 PDSQFEC 8
PDS EC
Sbjct: 215 PDSDHEC 221




27|Sequence|131|140|FECPDFSTCC

>sp|NTPTH_PYRIL|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Pyrobaculum islandicum (strain DSM 4184

Query: 1 FECPDFST 8
F+CP+F+T
Sbjct: 113 FKCPNFTT 120


>sp|KPTA_PYRAE|PROBABLE RNA 2'-phosphotransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 PDFSTCC 10
PDF+T C
Sbjct: 153 PDFATAC 159


>sp|NTPTH_PYRCJ|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 FECPDFST 8
F+CP F T
Sbjct: 114 FKCPTFYT 121


>sp|Y1747_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 3 CPDFSTC 9
CP+ S C
Sbjct: 587 CPELSAC 593


>sp|ACDA1_METMA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina mazei

Query: 3 CPDFSTC 9
CP++S C
Sbjct: 523 CPNYSDC 529


>sp|KPTA_AERPE|PROBABLE RNA 2'-phosphotransferase|Aeropyrum pernix (strain ATCC 700893

Query: 2 ECPDFSTCC 10
E P+ + CC
Sbjct: 4 ELPELALCC 12


>sp|CHEB_THEKO|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Thermococcus

Query: 4 PDFSTCC 10
PD CC
Sbjct: 30 PDIEVCC 36


>sp|SYL_THEVO|LEUCINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 5 DFSTCC 10
D+S CC
Sbjct: 2 DYSRCC 7


>sp|Y993_METJA|PUTATIVE hydrogenase expression/formation protein MJ0993|Methanocaldococcus

Query: 2 ECPDFSTCC 10
+CP F T C
Sbjct: 324 DCPLFGTVC 332


>sp|PYRK_METKA|PROBABLE dihydroorotate dehydrogenase B (NAD(+)),|Methanopyrus kandleri

Query: 2 ECPDFSTCC 10
ECPD C
Sbjct: 179 ECPDVVYAC 187




28|Sequence|136|145|FSTCCVMVDG

>sp|SEPS_ARCFU|O-PHOSPHOSERINE--TRNA(CYS) ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 FSTCCVMVD 9
FS CV+VD
Sbjct: 230 FSASCVLVD 238


>sp|DHQS_METHJ|3-DEHYDROQUINATE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 TCCVMVDG 10
TC +MVDG
Sbjct: 172 TCSLMVDG 179


>sp|METK_METHJ|S-ADENOSYLMETHIONINE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 FSTCCVMVD 9
+ CC MVD
Sbjct: 210 LTICCAMVD 218


>sp|LYSJ_PYRAE|PUTATIVE [LysW]-aminoadipate semialdehyde/glutamate semialdehyde

Query: 3 TCCVMVD 9
TCCV+V+
Sbjct: 170 TCCVVVE 176


>sp|CYAS_METBU|CYSTEATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 2 STCCVMVDG 10
S C V VDG
Sbjct: 168 SVCTVTVDG 176


>sp|PURP_METJA|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanocaldococcus jannaschii (strain

Query: 1 FSTCCVMVDG 10
FST C+ + G
Sbjct: 41 FSTVCITMKG 50


>sp|CYAS_METLZ|CYSTEATE synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 5 CVMVDG 10
CVM+DG
Sbjct: 212 CVMLDG 217


>sp|AATA_METBU|A-TYPE ATP synthase subunit A|Methanococcoides burtonii (strain DSM 6242

Query: 3 TCCVMVDG 10
T CV+ DG
Sbjct: 171 TICVLTDG 178


>sp|DHQS_METMJ|3-DEHYDROQUINATE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 TCCVMVDG 10
TC ++ DG
Sbjct: 172 TCSILADG 179


>sp|DHQS_METPE|3-DEHYDROQUINATE synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 3 TCCVMVDG 10
TC ++ DG
Sbjct: 172 TCSILADG 179




29|Sequence|141|150|VMVDGSWGCC

>sp|PPSA_METTH|PROBABLE phosphoenolpyruvate synthase|Methanothermobacter thermautotrophicus

Query: 1 VMVDGSWG 8
++++GSWG
Sbjct: 237 ILIEGSWG 244


>sp|PPSA_PYRHO|PROBABLE phosphoenolpyruvate synthase|Pyrococcus horikoshii (strain ATCC

Query: 1 VMVDGSWG 8
+M++ SWG
Sbjct: 246 IMINASWG 253


>sp|PPSA_PYRFU|PHOSPHOENOLPYRUVATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 VMVDGSWG 8
+M++ SWG
Sbjct: 243 IMINASWG 250


>sp|PPSA_PYRAB|PROBABLE phosphoenolpyruvate synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 VMVDGSWG 8
+M++ SWG
Sbjct: 243 IMINASWG 250


>sp|LYSX_SULTO|ALPHA-AMINOADIPATE--LYSW ligase LysX|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 VDGSWG 8
V+GSWG
Sbjct: 133 VEGSWG 138


>sp|LYSX_SACS2|ALPHA-AMINOADIPATE--LYSW ligase LysX|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 VDGSWG 8
V+GSWG
Sbjct: 123 VEGSWG 128


>sp|DEGLY_THEKO|DEGLYCASE TK1284|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 VMVDGSW 7
V+VDG+W
Sbjct: 139 VVVDGNW 145


>sp|DEGLY_PYRHO|DEGLYCASE PH1704|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 VMVDGSW 7
V+VDG+W
Sbjct: 139 VVVDGNW 145


>sp|DEGLY_PYRFU|DEGLYCASE PfpI|Pyrococcus furiosus (strain ATCC 43587

Query: 1 VMVDGSW 7
V+VDG+W
Sbjct: 139 VVVDGNW 145


>sp|DEGLY_PYRAB|DEGLYCASE PYRAB04690|Pyrococcus abyssi (strain GE5 /

Query: 1 VMVDGSW 7
V+VDG+W
Sbjct: 139 VVVDGNW 145


>sp|SDO1_ARCFU|RIBOSOME maturation protein SDO1 homolog|Archaeoglobus fulgidus (strain ATCC

Query: 4 DGSWGC 9
DGSW C
Sbjct: 196 DGSWIC 201


>sp|Y856_METTH|METALLOPROTEASE MTH_856|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 VMVDGSWG 8
V+ +GSWG
Sbjct: 56 VLRNGSWG 63


>sp|RRP41_PYRNV|EXOSOME complex component Rrp41|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 VMVDGSWG 8
+ +DG+WG
Sbjct: 199 LQLDGAWG 206


>sp|RS5_METS3|SMALL ribosomal subunit protein uS5|Methanobrevibacter smithii (strain

Query: 5 GSWGC 9
G WGC
Sbjct: 117 GDWGC 121


>sp|COBQ_METVS|PROBABLE cobyric acid synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 VMVDGSWGCC 10
V+++G+ CC
Sbjct: 129 VVIEGAGSCC 138


>sp|COBQ_METMP|PROBABLE cobyric acid synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 VMVDGSWGCC 10
V+++G+ CC
Sbjct: 129 VVIEGAGSCC 138


>sp|COBQ_METM7|PROBABLE cobyric acid synthase|Methanococcus maripaludis (strain C7 /

Query: 1 VMVDGSWGCC 10
V+++G+ CC
Sbjct: 129 VVIEGAGSCC 138


>sp|COBQ_METM6|PROBABLE cobyric acid synthase|Methanococcus maripaludis (strain C6 /

Query: 1 VMVDGSWGCC 10
V+++G+ CC
Sbjct: 129 VVIEGAGSCC 138


>sp|COBQ_METM5|PROBABLE cobyric acid synthase|Methanococcus maripaludis (strain C5 /

Query: 1 VMVDGSWGCC 10
V+++G+ CC
Sbjct: 129 VVIEGAGSCC 138


>sp|LYSX_SULAC|ALPHA-AMINOADIPATE--LYSW ligase LysX|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 VDGSWG 8
++GSWG
Sbjct: 124 IEGSWG 129


>sp|Y525_METKA|UNCHARACTERIZED protein MK0525|Methanopyrus kandleri (strain AV19 /

Query: 3 VDGSWGC 9
VDG W C
Sbjct: 171 VDGVWVC 177


>sp|RTCA_PYRFU|RNA 3'-terminal phosphate cyclase|Pyrococcus furiosus (strain ATCC

Query: 1 VMVDGSWG 8
+++DGS+G
Sbjct: 2 IIIDGSYG 9


>sp|RTCA_THEON|RNA 3'-terminal phosphate cyclase|Thermococcus onnurineus (strain

Query: 1 VMVDGSWG 8
+++DGS+G
Sbjct: 4 IVIDGSYG 11


>sp|RS5_METTH|SMALL ribosomal subunit protein uS5|Methanothermobacter

Query: 5 GSWGC 9
G WGC
Sbjct: 119 GDWGC 123


>sp|Y452_PYRAB|UNCHARACTERIZED lipoprotein PYRAB04520|Pyrococcus abyssi (strain GE5 /

Query: 1 VMVDGSW 7
++VDG+W
Sbjct: 290 MVVDGTW 296


>sp|Y1714_PYRHO|UNCHARACTERIZED lipoprotein PH1714|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 VMVDGSW 7
++VDG+W
Sbjct: 291 MVVDGTW 297


>sp|MCAL_HALMA|L-MALYL-COA/BETA-METHYLMALYL-COA lyase|Haloarcula marismortui (strain ATCC 43049

Query: 3 VDGSW 7
+DGSW
Sbjct: 247 IDGSW 251


>sp|Y1571_AERPE|UNCHARACTERIZED protein APE_1571.1|Aeropyrum pernix (strain ATCC 700893

Query: 2 MVDGSWG 8
+V+G WG
Sbjct: 476 LVEGRWG 482


>sp|DPOL_THELI|DNA polymerase|Thermococcus litoralis

Query: 1 VMVDGSWG 8
++ DG+WG
Sbjct: 1233 IVGDGNWG 1240


>sp|DPOL_THEHY|DNA polymerase|Thermococcus hydrothermalis

Query: 4 DGSWG 8
DG+WG
Sbjct: 1198 DGNWG 1202


>sp|DPOL_THEG8|DNA polymerase|Thermococcus sp. (strain GE8)

Query: 4 DGSWG 8
DG+WG
Sbjct: 1229 DGNWG 1233


>sp|DPOL_THEFM|DNA polymerase|Thermococcus fumicolans

Query: 4 DGSWG 8
DG+WG
Sbjct: 1054 DGNWG 1058


>sp|RTCA_PYRIL|RNA 3'-terminal phosphate cyclase|Pyrobaculum islandicum (strain DSM

Query: 1 VMVDGSWG 8
V +DGS+G
Sbjct: 3 VKIDGSYG 10


>sp|RTCA_PYRNV|RNA 3'-terminal phosphate cyclase|Pyrobaculum neutrophilum (strain

Query: 1 VMVDGSWG 8
V +DGS+G
Sbjct: 3 VRIDGSYG 10


>sp|RTCA_PYRAE|RNA 3'-terminal phosphate cyclase|Pyrobaculum aerophilum (strain ATCC

Query: 1 VMVDGSWG 8
V +DGS+G
Sbjct: 3 VRIDGSYG 10




30|Sequence|146|155|SWGCCPMPQA

>sp|Y1125_METJA|UNCHARACTERIZED protein MJ1125|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GCCPMP 8
GCC MP
Sbjct: 40 GCCGMP 45


>sp|SYG_AERPE|GLYCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 WGCCP 6
WG CP
Sbjct: 228 WGSCP 232


>sp|HIS8_METVS|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus vannielii (strain ATCC 35089

Query: 2 WGCCP 6
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METMP|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain DSM 14266

Query: 2 WGCCP 6
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METM7|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C7 /

Query: 2 WGCCP 6
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METM6|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C6 /

Query: 2 WGCCP 6
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METM5|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C5 /

Query: 2 WGCCP 6
WGC P
Sbjct: 47 WGCSP 51


>sp|FOLCP_HALSA|PROBABLE bifunctional folylpolyglutamate synthase/dihydropteroate

Query: 2 WGCCPMP 8
W C P+P
Sbjct: 356 WACEPVP 362


>sp|HDRB_METTM|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 4 CCPMP 8
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB_METTH|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 4 CCPMP 8
CCP P
Sbjct: 41 CCPAP 45


>sp|TREH_THEVO|TREHALASE volcanium (strain ATCC 51530

Query: 2 WGCCP 6
WGC P
Sbjct: 53 WGCLP 57


>sp|TREH_THEAC|TREHALASE acidophilum (strain ATCC 25905

Query: 2 WGCCP 6
WGC P
Sbjct: 11 WGCLP 15


>sp|PRIL_METKA|DNA primase large subunit PriL|Methanopyrus kandleri (strain AV19 /

Query: 1 SWGCCP 6
+WG CP
Sbjct: 380 AWGLCP 385


>sp|HDRB1_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 4 CCPMP 8
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB2_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B2|Methanococcus

Query: 4 CCPMP 8
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B1|Methanococcus

Query: 4 CCPMP 8
CCP P
Sbjct: 46 CCPAP 50


>sp|NADA_METB6|QUINOLINATE synthase|Methanoregula boonei (strain DSM 21154

Query: 3 GCCPMPQ 9
CCPM +
Sbjct: 85 ACCPMAE 91


>sp|HDRB2_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 4 CCPMP 8
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB_METKA|COB--COM heterodisulfide reductase subunit B|Methanopyrus kandleri (strain

Query: 4 CCPMP 8
CCP P
Sbjct: 43 CCPAP 47


>sp|NADA_METKA|QUINOLINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 3 GCCPM 7
GCCP+
Sbjct: 156 GCCPV 160


>sp|SPEH_METJA|S-ADENOSYLMETHIONINE decarboxylase proenzyme|Methanocaldococcus jannaschii (strain

Query: 2 WGCCP 6
WGC P
Sbjct: 14 WGCDP 18


>sp|HDRB2_METAC|FERREDOXIN/F(420)H(2)-DEPENDENT CoB-CoM heterodisulfide reductase subunit|Methanosarcina

Query: 4 CCPMP 8
CCP P
Sbjct: 42 CCPAP 46


>sp|Y2166_ARCFU|UNCHARACTERIZED protein AF_2166|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SWGCCPMP 8
SWG MP
Sbjct: 68 SWGIVSMP 75


>sp|HDRB_METMA|FERREDOXIN:COB-COM heterodisulfide reductase subunit B|Methanosarcina mazei (strain

Query: 4 CCPMP 8
CCP P
Sbjct: 42 CCPAP 46


>sp|Y1363_METJA|UNCHARACTERIZED protein MJ1363|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GCCPMPQ 9
GC P P+
Sbjct: 128 GCAPRPE 134


>sp|MBHJ_PYRFU|PROBABLE membrane-bound hydrogenase subunit mbhJ|Pyrococcus furiosus (strain

Query: 3 GCCPMPQA 10
GC P P+A
Sbjct: 131 GCPPRPEA 138




31|Sequence|151|160|PMPQASCCED

>sp|HDRB2_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B2|Methanococcus

Query: 2 MPQASCC 8
MP ASCC
Sbjct: 36 MPGASCC 42


>sp|HDRB1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B1|Methanococcus

Query: 1 PMPQASCC 8
P QASCC
Sbjct: 40 PFEQASCC 47


>sp|LONB_METJA|ARCHAEAL Lon protease|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PMPQASCCE 9
PM CCE
Sbjct: 344 PMTYDGCCE 352


>sp|HELS_METB6|ATP-DEPENDENT DNA helicase Hel308|Methanoregula boonei (strain DSM 21154

Query: 3 PQASCCE 9
PQA+C E
Sbjct: 27 PQAACVE 33


>sp|GATA_METBU|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanococcoides burtonii (strain DSM

Query: 3 PQASCCED 10
P A+C ED
Sbjct: 205 PMATCVED 212


>sp|NADA2_METAC|QUINOLINATE synthase 2|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PMPQASC 7
P+P+A C
Sbjct: 86 PVPEAGC 92




32|Sequence|156|165|SCCEDRVHCC

>sp|QUEC_METTH|7-CYANO-7-DEAZAGUANINE synthase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 5 DRVHC 9
DRVHC
Sbjct: 192 DRVHC 196


>sp|PNCB_METAC|NICOTINATE phosphoribosyltransferase|Methanosarcina acetivorans (strain ATCC

Query: 3 CEDRVHC 9
C+D+++C
Sbjct: 332 CQDKINC 338


>sp|Y1232_METJA|UNCHARACTERIZED protein MJ1232|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CCEDRVH 8
CC ++H
Sbjct: 111 CCSSKIH 117




33|Sequence|161|170|RVHCCPHGAF

>sp|LEUC_METJA|ISOPROPYLMALATE/CITRAMALATE isomerase large subunit|Methanocaldococcus jannaschii (strain ATCC

Query: 3 HCCPHGAF 10
H C HGAF
Sbjct: 124 HTCTHGAF 131


>sp|HACA_METJA|METHANOGEN homoaconitase large subunit|Methanocaldococcus jannaschii (strain

Query: 3 HCCPHGAF 10
H C HGAF
Sbjct: 119 HTCTHGAF 126


>sp|AGL5_HALVD|LOW-SALT glycan biosynthesis hexosyltransferase Agl5|Haloferax volcanii

Query: 2 VHCCPHGAF 10
VH PHG +
Sbjct: 176 VHVIPHGVY 184


>sp|SYT_THESM|THREONINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 473 LHCSPSGA 480


>sp|SYT_THEON|THREONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 475 LHCSPSGA 482


>sp|SYT_THEKO|THREONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 474 LHCSPSGA 481


>sp|SYT_THEGJ|THREONINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 474 LHCSPSGA 481


>sp|SYT_PYRHO|THREONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 473 LHCSPSGA 480


>sp|SYT_PYRFU|THREONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 473 LHCSPSGA 480


>sp|SYT_PYRAB|THREONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 473 LHCSPSGA 480


>sp|SYT_METTP|THREONINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 468 LHCSPSGA 475


>sp|SYT_METMA|THREONINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 481 LHCSPSGA 488


>sp|SYT_METBU|THREONINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 482 LHCSPSGA 489


>sp|SYT_METBF|THREONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 482 LHCSPSGA 489


>sp|SYT_METAR|THREONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 484 LHCSPSGA 491


>sp|SYT_METAC|THREONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 VHCCPHGA 9
+HC P GA
Sbjct: 482 LHCSPSGA 489


>sp|TRM1_METLZ|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanocorpusculum labreanum

Query: 1 RVHCCPH 7
++H CPH
Sbjct: 253 KMHICPH 259


>sp|DPO4_METMJ|DNA polymerase IV|Methanoculleus marisnigri (strain ATCC 35101

Query: 5 CPHGAF 10
CPHG +
Sbjct: 73 CPHGVY 78


>sp|HACA_METMA|PROBABLE methanogen homoaconitase large subunit|Methanosarcina mazei (strain

Query: 3 HCCPHGAF 10
H C +GAF
Sbjct: 100 HSCTYGAF 107


>sp|HACA_METAC|PROBABLE methanogen homoaconitase large subunit|Methanosarcina acetivorans

Query: 3 HCCPHGAF 10
H C +GAF
Sbjct: 133 HSCTYGAF 140


>sp|LEUC_METTH|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanothermobacter

Query: 3 HCCPHGAF 10
H C HGA
Sbjct: 124 HTCTHGAL 131


>sp|RPO3_SACS2|DNA-DIRECTED RNA polymerase subunit Rpo3|Saccharolobus solfataricus (strain ATCC

Query: 2 VHCCPHGAF 10
V+ CP G F
Sbjct: 180 VNVCPEGVF 188


>sp|LEUC1_METKA|3-ISOPROPYLMALATE dehydratase large subunit 1|Methanopyrus kandleri (strain AV19 /

Query: 3 HCCPHGAF 10
H C HGA
Sbjct: 123 HTCTHGAL 130


>sp|MUTL_HALSA|DNA mismatch repair protein MutL|Halobacterium salinarum (strain ATCC

Query: 3 HCCPHG 8
+ CPHG
Sbjct: 621 YACPHG 626


>sp|MUTL_HALS3|DNA mismatch repair protein MutL|Halobacterium salinarum (strain ATCC

Query: 3 HCCPHG 8
+ CPHG
Sbjct: 621 YACPHG 626


>sp|IORA_PYRHO|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus horikoshii (strain ATCC

Query: 5 CPHGAF 10
CP GAF
Sbjct: 635 CPFGAF 640


>sp|RPO3_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo3|Sulfolobus acidocaldarius (strain ATCC

Query: 2 VHCCPHGAF 10
V CP G F
Sbjct: 180 VEVCPEGVF 188


>sp|GLMM_METKA|PROBABLE phosphoglucosamine mutase|Methanopyrus kandleri (strain AV19 /

Query: 2 VHCCPHG 8
VH CP G
Sbjct: 328 VHMCPDG 334


>sp|MUTL_METLZ|DNA mismatch repair protein MutL|Methanocorpusculum labreanum (strain

Query: 3 HCCPHG 8
+ CPHG
Sbjct: 564 YTCPHG 569


>sp|FOLD_METMA|BIFUNCTIONAL protein FolD|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 VHCCPHG 8
V C PHG
Sbjct: 144 VPCTPHG 150


>sp|FOLD_METBF|BIFUNCTIONAL protein FolD|Methanosarcina barkeri (strain Fusaro /

Query: 2 VHCCPHG 8
V C PHG
Sbjct: 144 VPCTPHG 150


>sp|FOLD_METAC|BIFUNCTIONAL protein FolD|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 VHCCPHG 8
V C PHG
Sbjct: 147 VPCTPHG 153


>sp|ASSTI_METAC|L-ASPARTATE semialdehyde sulfurtransferase iron-sulfur subunit|Methanosarcina

Query: 2 VHCCPHGAF 10
+ CPHGA
Sbjct: 118 IKMCPHGAL 126


>sp|Y1681_METJA|UNCHARACTERIZED protein MJ1681|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 CPHGAF 10
CP+G F
Sbjct: 335 CPYGVF 340


>sp|MUTL_METTP|DNA mismatch repair protein MutL|Methanothrix thermoacetophila (strain

Query: 5 CPHG 8
CPHG
Sbjct: 535 CPHG 538


>sp|MUTL_METMJ|DNA mismatch repair protein MutL|Methanoculleus marisnigri (strain ATCC

Query: 5 CPHG 8
CPHG
Sbjct: 563 CPHG 566


>sp|ELP3_METJA|TRNA uridine(34) acetyltransferase|Methanocaldococcus jannaschii

Query: 5 CPHG 8
CPHG
Sbjct: 96 CPHG 99


>sp|ELP3_METIM|TRNA uridine(34) acetyltransferase|Methanocaldococcus infernus (strain

Query: 5 CPHG 8
CPHG
Sbjct: 90 CPHG 93


>sp|SAT_STAMF|SULFATE adenylyltransferase|Staphylothermus marinus (strain ATCC 43588

Query: 5 CPHG 8
CPHG
Sbjct: 335 CPHG 338


>sp|SAT_AERPE|SULFATE adenylyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 5 CPHG 8
CPHG
Sbjct: 337 CPHG 340


>sp|HACA_METTH|PROBABLE methanogen homoaconitase large subunit|Methanothermobacter

Query: 3 HCCPHGAF 10
H C +GAF
Sbjct: 129 HTCTYGAF 136


>sp|DMRX_METJA|DIHYDROMETHANOPTERIN reductase (acceptor)|Methanocaldococcus jannaschii (strain ATCC

Query: 2 VHCCPHGA 9
++ CP+GA
Sbjct: 166 INVCPNGA 173


>sp|CARB_METTH|CARBAMOYL phosphate synthase large chain|Methanothermobacter

Query: 3 HCCPHGA 9
+CC H A
Sbjct: 565 YCCVHAA 571


>sp|RBL_METAC|RIBULOSE bisphosphate carboxylase|Methanosarcina acetivorans (strain ATCC

Query: 3 HCCPHGAF 10
H C H AF
Sbjct: 270 HRCMHSAF 277


>sp|HDRA2_METKA|COB--COM heterodisulfide reductase iron-sulfur subunit|Methanopyrus kandleri

Query: 2 VHCCPHGA 9
V CP+GA
Sbjct: 593 VELCPYGA 600




34|Sequence|166|175|PHGAFCDLVH

>sp|PURA_METTP|ADENYLOSUCCINATE synthetase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 HGAFCDLVH 10
GAF D++H
Sbjct: 220 QGAFLDVIH 228


>sp|GUAAA_METBU|GMP synthase [glutamine-hydrolyzing] subunit A|Methanococcoides

Query: 2 HGAFCDLVH 10
+G FC L+H
Sbjct: 12 YGQFCHLIH 20


>sp|ARGC_METJA|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PHGAFCDLV 9
PHGA D+V
Sbjct: 77 PHGASMDIV 85


>sp|HERA_METJA|PROBABLE DNA double-strand break repair|Methanocaldococcus jannaschii

Query: 1 PHGAFCDLVH 10
PHG + L H
Sbjct: 157 PHGEYISLYH 166


>sp|PDXS_HALLT|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Halorubrum lacusprofundi (strain

Query: 2 HGAFCDLVH 10
HGA DLVH
Sbjct: 197 HGAPRDLVH 205


>sp|SYC_META3|CYSTEINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 HGAFCDLV 9
HG CDL+
Sbjct: 222 HGGGCDLI 229


>sp|GCH3_HALLT|GTP cyclohydrolase III|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 PHGAFCDLV 9
P GAF D V
Sbjct: 197 PEGAFADTV 205


>sp|SYDND_NATPD|ASPARTATE--TRNA(ASP/ASN) ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 GAFCD 7
GAFCD
Sbjct: 231 GAFCD 235


>sp|OTC_METMP|ORNITHINE carbamoyltransferase|Methanococcus maripaludis (strain DSM 14266

Query: 4 AFCDLVH 10
A CDL H
Sbjct: 119 ALCDLAH 125


>sp|OTC_METM7|ORNITHINE carbamoyltransferase|Methanococcus maripaludis (strain C7 /

Query: 4 AFCDLVH 10
A CDL H
Sbjct: 119 ALCDLAH 125


>sp|OTC_METM5|ORNITHINE carbamoyltransferase|Methanococcus maripaludis (strain C5 /

Query: 4 AFCDLVH 10
A CDL H
Sbjct: 119 ALCDLAH 125


>sp|GUAAA_METBF|GMP synthase [glutamine-hydrolyzing] subunit A|Methanosarcina barkeri

Query: 2 HGAFCDLVH 10
+G FC L+H
Sbjct: 12 YGQFCHLIH 20


>sp|NEP1_SACS2|RIBOSOMAL RNA small subunit methyltransferase|Saccharolobus solfataricus

Query: 1 PHGAFCDLV 9
PHG F D +
Sbjct: 175 PHGDFSDKI 183


>sp|MES_EURX9|METALLOPTERIN-DEPENDENT ergothioneine synthase|Euryarchaeota archaeon (strain ADurb.Bin009)

Query: 3 GAFCDLVH 10
GAF DL+H
Sbjct: 1111 GAFRDLLH 1118


>sp|GUAAA_METMA|GMP synthase [glutamine-hydrolyzing] subunit A|Methanosarcina mazei

Query: 2 HGAFCDLVH 10
+G FC L+H
Sbjct: 12 YGQFCHLIH 20


>sp|GUAAA_METAC|GMP synthase [glutamine-hydrolyzing] subunit A|Methanosarcina

Query: 2 HGAFCDLVH 10
+G FC L+H
Sbjct: 12 YGQFCHLIH 20


>sp|COBD_ARCFU|PROBABLE cobalamin biosynthesis protein CobD|Archaeoglobus fulgidus

Query: 2 HGAFCDLV 9
+GAFC L+
Sbjct: 52 YGAFCCLI 59


>sp|SYFA_METAR|PHENYLALANINE--TRNA ligase alpha subunit|Methanocella arvoryzae (strain DSM 22066

Query: 2 HGAFCDL 8
HG CD+
Sbjct: 477 HGPLCDI 483


>sp|RPIA_METAC|RIBOSE-5-PHOSPHATE isomerase A|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 HGAFCDL 8
HG FC++
Sbjct: 209 HGIFCNV 215


>sp|FRHG_METBF|COENZYME F420 hydrogenase subunit gamma|Methanosarcina barkeri (strain

Query: 3 GAFCDLVH 10
G FCDL++
Sbjct: 174 GCFCDLMY 181


>sp|CARB_METBF|CARBAMOYL phosphate synthase large chain|Methanosarcina barkeri (strain

Query: 2 HGAFCDLV 9
HG F D+V
Sbjct: 978 HGVFMDVV 985


>sp|CARB_METBA|CARBAMOYL phosphate synthase large chain|Methanosarcina barkeri

Query: 2 HGAFCDLV 9
HG F D+V
Sbjct: 301 HGVFMDVV 308


>sp|LYSY_CENSY|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 1 PHGAFCDLV 9
PHG D+V
Sbjct: 76 PHGTATDIV 84




35|Sequence|171|180|CDLVHTRCIT

>sp|COFF_METMP|COENZYME gamma-F420-2:alpha-L-glutamate ligase|Methanococcus maripaludis

Query: 2 DLVHTRC 8
DL+H+RC
Sbjct: 48 DLIHSRC 54


>sp|COFF_METJA|COENZYME gamma-F420-2:alpha-L-glutamate ligase|Methanocaldococcus

Query: 2 DLVHTRC 8
DL+H+RC
Sbjct: 51 DLIHSRC 57


>sp|SYA_METMA|ALANINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 HTRCIT 10
HTRC+T
Sbjct: 341 HTRCLT 346


>sp|SYA_METBU|ALANINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 5 HTRCIT 10
HTRC+T
Sbjct: 341 HTRCLT 346


>sp|SYA_METBF|ALANINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 5 HTRCIT 10
HTRC+T
Sbjct: 341 HTRCLT 346


>sp|SYA_METAC|ALANINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 HTRCIT 10
HTRC+T
Sbjct: 341 HTRCLT 346


>sp|PAN_METHJ|PROTEASOME-ACTIVATING nucleotidase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 VHTRCI 9
VHTRC+
Sbjct: 335 VHTRCM 340


>sp|SYA_ARCFU|ALANINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 HTRCI 9
HTRCI
Sbjct: 343 HTRCI 347


>sp|ARLY_META3|ARGININOSUCCINATE lyase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 CDLVHTRCI 9
CD+ HT+ +
Sbjct: 42 CDIAHTKML 50


>sp|CDC6_METLZ|ORC1-TYPE DNA replication protein|Methanocorpusculum labreanum (strain ATCC

Query: 1 CDLVHTRCIT 10
C LVH C T
Sbjct: 94 CRLVHLNCET 103


>sp|ARLY_METTH|ARGININOSUCCINATE lyase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 CDLVHTRCI 9
C++ HTR +
Sbjct: 36 CNMAHTRML 44


>sp|SYA_METVS|ALANINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 5 HTRCIT 10
HTRC++
Sbjct: 330 HTRCLS 335


>sp|SYA_METST|ALANINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 5 HTRCIT 10
HTRC++
Sbjct: 321 HTRCLS 326


>sp|SYA_METMP|ALANINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 5 HTRCIT 10
HTRC++
Sbjct: 330 HTRCLS 335


>sp|SYA_METM7|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 5 HTRCIT 10
HTRC++
Sbjct: 330 HTRCLS 335


>sp|SYA_METM6|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 5 HTRCIT 10
HTRC++
Sbjct: 330 HTRCLS 335


>sp|SYA_METM5|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 5 HTRCIT 10
HTRC++
Sbjct: 330 HTRCLS 335


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 5 HTRCIT 10
HTRC++
Sbjct: 341 HTRCLS 346


>sp|NNRD_CENSY|ADP-DEPENDENT (S)-NAD(P)H-hydrate dehydratase|Cenarchaeum symbiosum (strain A)

Query: 1 CDLVHT 6
CDLV+T
Sbjct: 55 CDLVYT 60


>sp|ARLY_METVS|ARGININOSUCCINATE lyase|Methanococcus vannielii (strain ATCC 35089

Query: 1 CDLVHT 6
CD+ HT
Sbjct: 37 CDIAHT 42


>sp|ARLY_METMP|ARGININOSUCCINATE lyase|Methanococcus maripaludis (strain DSM 14266

Query: 1 CDLVHT 6
CD+ HT
Sbjct: 37 CDIAHT 42


>sp|ARLY_METM7|ARGININOSUCCINATE lyase|Methanococcus maripaludis (strain C7 /

Query: 1 CDLVHT 6
CD+ HT
Sbjct: 37 CDIAHT 42


>sp|ARLY_METM6|ARGININOSUCCINATE lyase|Methanococcus maripaludis (strain C6 /

Query: 1 CDLVHT 6
CD+ HT
Sbjct: 37 CDIAHT 42


>sp|ARLY_METM5|ARGININOSUCCINATE lyase|Methanococcus maripaludis (strain C5 /

Query: 1 CDLVHT 6
CD+ HT
Sbjct: 37 CDIAHT 42


>sp|ACDA1_METBF|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina barkeri

Query: 2 DLVHTRCI 9
D++H +CI
Sbjct: 449 DILHDQCI 456


>sp|Y36K_HALSN|UNCHARACTERIZED 36 kDa protein|Halobacterium sp. (strain GN101)

Query: 2 DLVHTRCIT 10
DL+HT +T
Sbjct: 93 DLLHTAMVT 101




36|Sequence|176|185|TRCITPTGTH

>sp|TRPB2_AERPE|TRYPTOPHAN synthase beta chain 2|Aeropyrum pernix (strain ATCC 700893

Query: 4 ITPTGTH 10
+TPTG+H
Sbjct: 109 VTPTGSH 115


>sp|SODM2_HALME|SUPEROXIDE dismutase [Mn] 2|Haloferax mediterranei (Halobacterium

Query: 2 RCITPTG 8
RC+TP G
Sbjct: 47 RCMTPNG 53


>sp|HEM3_HALSA|PROBABLE porphobilinogen deaminase|Halobacterium salinarum (strain ATCC

Query: 3 CITPTGTH 10
CI P G H
Sbjct: 328 CIAPIGVH 335


>sp|TRPB1_SULTO|TRYPTOPHAN synthase beta chain 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 TPTGTH 10
TPTG+H
Sbjct: 101 TPTGSH 106


>sp|TRPB1_SACS2|TRYPTOPHAN synthase beta chain 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 TPTGTH 10
TPTG+H
Sbjct: 102 TPTGSH 107


>sp|AATB_METS5|A-TYPE ATP synthase subunit B|Metallosphaera sedula (strain ATCC 51363

Query: 1 TRCITPTGT 9
TR I+P GT
Sbjct: 65 TRGISPVGT 73


>sp|UVRC_HALLT|UVRABC system protein C|Halorubrum lacusprofundi (strain ATCC 49239

Query: 4 ITPTGT 9
+TPTGT
Sbjct: 498 VTPTGT 503


>sp|SYFB_METBU|PHENYLALANINE--TRNA ligase beta subunit|Methanococcoides burtonii (strain DSM 6242

Query: 4 ITPTGTH 10
+TP+G H
Sbjct: 77 VTPSGVH 83


>sp|TRPB1_AERPE|TRYPTOPHAN synthase beta chain 1|Aeropyrum pernix (strain ATCC 700893

Query: 1 TRCITPTGTH 10
+ + PTG+H
Sbjct: 97 SEAVLPTGSH 106


>sp|CARA_METM6|CARBAMOYL phosphate synthase small chain|Methanococcus maripaludis (strain C6

Query: 3 CITPTGT 9
C+ PTG+
Sbjct: 297 CVVPTGS 303


>sp|THIC_HALSA|PHOSPHOMETHYLPYRIMIDINE synthase|Halobacterium salinarum (strain ATCC 700922

Query: 6 PTGTH 10
PTGTH
Sbjct: 455 PTGTH 459


>sp|THIC_HALS3|PHOSPHOMETHYLPYRIMIDINE synthase|Halobacterium salinarum (strain ATCC 29341

Query: 6 PTGTH 10
PTGTH
Sbjct: 455 PTGTH 459




37|Sequence|181|190|PTGTHPLAKK

>sp|SYS_THEON|SERINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 1 PTGTHPLA 8
PT HPLA
Sbjct: 251 PTAEHPLA 258


>sp|SYS_THEKO|SERINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PTGTHPLA 8
PT HPLA
Sbjct: 251 PTAEHPLA 258


>sp|SYS_THEGJ|SERINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 PTGTHPLA 8
PT HPLA
Sbjct: 251 PTAEHPLA 258


>sp|SYS_PYRHO|SERINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PTGTHPLA 8
PT HPLA
Sbjct: 251 PTAEHPLA 258


>sp|SYS_PYRFU|SERINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PTGTHPLA 8
PT HPLA
Sbjct: 251 PTAEHPLA 258


>sp|SYS_PYRAB|SERINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 PTGTHPLA 8
PT HPLA
Sbjct: 251 PTAEHPLA 258


>sp|SYS_THESM|SERINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 1 PTGTHPLA 8
PT HPLA
Sbjct: 251 PTSEHPLA 258


>sp|SYM_METMJ|METHIONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 PTGTHPLAK 9
P G PLAK
Sbjct: 516 PVGARPLAK 524


>sp|GCS2_HALMA|GLUTAMATE--CYSTEINE ligase|Haloarcula marismortui (strain ATCC 43049

Query: 3 GTHPLAK 9
G HPLAK
Sbjct: 100 GLHPLAK 106


>sp|PURP_METTH|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanothermobacter thermautotrophicus

Query: 2 TGTHPLAKK 10
TG HP+A +
Sbjct: 258 TGNHPVAMR 266


>sp|GLMM_METKA|PROBABLE phosphoglucosamine mutase|Methanopyrus kandleri (strain AV19 /

Query: 1 PTGTHPLAK 9
P+GT PL +
Sbjct: 413 PSGTEPLIR 421


>sp|MFNA_METMP|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcus maripaludis

Query: 2 TGTHPLAKK 10
T HP+A+K
Sbjct: 31 TKPHPMARK 39


>sp|MFNA_METM7|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcus maripaludis

Query: 2 TGTHPLAKK 10
T HP+A+K
Sbjct: 31 TKPHPMARK 39


>sp|MUTS_NATPD|DNA mismatch repair protein MutS|Natronomonas pharaonis (strain ATCC

Query: 2 TGTHPLA 8
TGT+P+A
Sbjct: 70 TGTYPMA 76


>sp|MFNA_METM5|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcus maripaludis

Query: 2 TGTHPLAKK 10
T HP+A+K
Sbjct: 31 TKPHPIARK 39


>sp|SYL_IGNH4|LEUCINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 GTHPLA 8
GTHP+A
Sbjct: 230 GTHPVA 235


>sp|IPK_METJA|ISOPENTENYL phosphate kinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 HPLAKK 10
HP+AKK
Sbjct: 60 HPVAKK 65


>sp|GLCDH_HALMT|GLUCOSE 1-dehydrogenase|Haloferax mediterranei (strain ATCC 33500

Query: 2 TGTHPLAK 9
TG HPL++
Sbjct: 329 TGVHPLSE 336




38|Sequence|186|195|PLAKKLPAQR

>sp|ARGB_METBU|ACETYLGLUTAMATE kinase|Methanococcoides burtonii (strain DSM 6242

Query: 2 LAKKLPAQR 10
LAKK P Q+
Sbjct: 137 LAKKKPTQK 145


>sp|PUR2_METVS|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus vannielii (strain ATCC 35089

Query: 4 KKLPAQ 9
KKLPAQ
Sbjct: 95 KKLPAQ 100


>sp|PUR2_METM5|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C5 /

Query: 4 KKLPAQ 9
KKLPAQ
Sbjct: 95 KKLPAQ 100


>sp|PUR2_METMP|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain DSM 14266

Query: 4 KKLPAQ 9
KKLPAQ
Sbjct: 95 KKLPAQ 100


>sp|PUR2_METM7|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C7 /

Query: 4 KKLPAQ 9
KKLPAQ
Sbjct: 95 KKLPAQ 100


>sp|PUR2_METM6|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C6 /

Query: 4 KKLPAQ 9
KKLPAQ
Sbjct: 95 KKLPAQ 100




39|Sequence|191|200|LPAQRTNRAV

>sp|GVPI2_HALSA|GAS vesicle protein I2|Halobacterium salinarum (strain ATCC 700922

Query: 1 LPAQRTN 7
LPAQRTN
Sbjct: 67 LPAQRTN 73


>sp|AGOG_THEKO|N-GLYCOSYLASE/DNA lyase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 LPAQRTNR 8
LP+ RTNR
Sbjct: 106 LPSSRTNR 113


>sp|COFD_HALMA|2-PHOSPHO-L-LACTATE transferase|Haloarcula marismortui (strain ATCC 43049

Query: 3 AQRTNRAV 10
A+R NRAV
Sbjct: 315 AERVNRAV 322


>sp|TRPB2_ARCFU|TRYPTOPHAN synthase beta chain 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LPAQRTNRAV 10
+PA TN AV
Sbjct: 381 IPAPETNHAV 390




40|Sequence|196|205|TNRAVALSSS

>sp|LYSY_NITMS|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 NRAVALSSS 10
NR +ALS+S
Sbjct: 305 NRLIALSAS 313




41|Sequence|201|210|ALSSSVMCPD

***** No hits found ******


42|Sequence|206|215|VMCPDARSRC

>sp|AATB_METJA|A-TYPE ATP synthase subunit B|Methanocaldococcus jannaschii (strain ATCC

Query: 1 VMCPDARSR 9
V+CPD R
Sbjct: 37 VICPDGEKR 45


>sp|DNBP_METTH|DNA-BINDING protein MTH_1615|Methanothermobacter thermautotrophicus (strain

Query: 1 VMCPDARSR 9
++ P+ARSR
Sbjct: 47 ILTPEARSR 55


>sp|RRP41_CENSY|EXOSOME complex component Rrp41|Cenarchaeum symbiosum (strain A)

Query: 1 VMCPDARSRC 10
V+ PD SRC
Sbjct: 206 VLTPDEYSRC 215


>sp|Y117_METBU|DNA-BINDING protein Mbur_0117|Methanococcoides burtonii (strain DSM 6242

Query: 1 VMCPDARSR 9
VM P+AR R
Sbjct: 50 VMTPEARER 58




43|Sequence|211|220|ARSRCPDGST

>sp|DHQS_METLZ|3-DEHYDROQUINATE synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 5 CPDGST 10
CPDG+T
Sbjct: 240 CPDGTT 245


>sp|SYA_CALMQ|ALANINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 RSRCP 6
RSRCP
Sbjct: 21 RSRCP 25


>sp|IF1A_METJA|TRANSLATION initiation factor 1A|Methanocaldococcus jannaschii (strain ATCC

Query: 2 RSRCPDGST 10
R RC DG T
Sbjct: 36 RVRCLDGKT 44


>sp|SYY_METS3|TYROSINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 RSRCPDGST 10
+S CP G T
Sbjct: 237 KSYCPQGET 245


>sp|IF1A_METLZ|TRANSLATION initiation factor 1A|Methanocorpusculum labreanum (strain ATCC

Query: 2 RSRCPDGST 10
R RC DG T
Sbjct: 44 RVRCSDGVT 52


>sp|DP2L_NATPD|DNA polymerase II large subunit|Natronomonas pharaonis (strain ATCC

Query: 2 RSRCPD 7
R+RCPD
Sbjct: 709 RARCPD 714


>sp|CREN7_CALMQ|CHROMATIN protein Cren7|Caldivirga maquilingensis (strain ATCC 700844

Query: 4 RCPDGST 10
+CP+G T
Sbjct: 46 KCPNGKT 52


>sp|GLMM_METAC|PROBABLE phosphoglucosamine mutase|Methanosarcina acetivorans (strain ATCC

Query: 3 SRCPDG 8
S CPDG
Sbjct: 320 SYCPDG 325


>sp|GLMM_METBF|PROBABLE phosphoglucosamine mutase|Methanosarcina barkeri (strain Fusaro /

Query: 3 SRCPDG 8
S CPDG
Sbjct: 320 SYCPDG 325


>sp|IF1A_META3|TRANSLATION initiation factor 1A|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 RSRCPDGST 10
R RC DG T
Sbjct: 38 RVRCMDGHT 46


>sp|IF2G_NATPD|TRANSLATION initiation factor 2 subunit|Natronomonas pharaonis (strain ATCC

Query: 5 CPDGS 9
CPDGS
Sbjct: 74 CPDGS 78


>sp|GLMM_METMA|PROBABLE phosphoglucosamine mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 SRCPDG 8
S CPDG
Sbjct: 320 SYCPDG 325


>sp|GLMM_METBU|PROBABLE phosphoglucosamine mutase|Methanococcoides burtonii (strain DSM

Query: 3 SRCPDG 8
S CPDG
Sbjct: 319 SYCPDG 324


>sp|GLMM_METAR|PROBABLE phosphoglucosamine mutase|Methanocella arvoryzae (strain DSM 22066

Query: 3 SRCPDG 8
S CPDG
Sbjct: 316 SYCPDG 321




44|Sequence|216|225|PDGSTCCELP

>sp|TFRB_METTM|FUMARATE reductase (CoM/CoB) subunit B|Methanothermobacter marburgensis

Query: 1 PDGSTCCELP 10
PDG CC P
Sbjct: 294 PDGQVCCGSP 303


>sp|HIS6_METPE|IMIDAZOLE glycerol phosphate synthase subunit|Methanosphaerula palustris

Query: 1 PDGSTC 6
PDG+TC
Sbjct: 148 PDGTTC 153


>sp|RL2_CENSY|LARGE ribosomal subunit protein uL2|Cenarchaeum symbiosum (strain A)

Query: 1 PDGSTCCEL 9
PDG+T C +
Sbjct: 101 PDGTTVCNV 109


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 PDGSTC 6
PDG TC
Sbjct: 1032 PDGETC 1037


>sp|HEM3_METBU|PROBABLE porphobilinogen deaminase|Methanococcoides burtonii (strain DSM

Query: 2 DGSTCCELP 10
DGST ELP
Sbjct: 105 DGSTLDELP 113


>sp|SYA_HALWD|ALANINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 PDGSTCCELP 10
PD TC E P
Sbjct: 35 PDRETCGEPP 44


>sp|SYL_METVS|LEUCINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 4 STCCELP 10
+TC ELP
Sbjct: 672 TTCAELP 678


>sp|SYL_METMP|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 4 STCCELP 10
+TC ELP
Sbjct: 675 TTCAELP 681


>sp|SYL_METM7|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 4 STCCELP 10
+TC ELP
Sbjct: 675 TTCAELP 681


>sp|SYL_METM5|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 4 STCCELP 10
+TC ELP
Sbjct: 675 TTCAELP 681


>sp|SYL_METJA|LEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 STCCELP 10
+TC ELP
Sbjct: 661 TTCAELP 667


>sp|SYL_META3|LEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 STCCELP 10
+TC ELP
Sbjct: 686 TTCAELP 692


>sp|AATD_ARCFU|A-TYPE ATP synthase subunit D|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 TCCELP 10
+CC++P
Sbjct: 82 SCCQIP 87


>sp|RADB_METBU|DNA repair and recombination protein|Methanococcoides burtonii (strain

Query: 1 PDGSTC 6
P+G+TC
Sbjct: 210 PEGTTC 215


>sp|GLYA_PYRNV|SERINE hydroxymethyltransferase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 PDGSTCCELP 10
P+G T LP
Sbjct: 106 PEGGTVASLP 115


>sp|GLYA_PYRIL|SERINE hydroxymethyltransferase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 PDGSTCCELP 10
P+G T LP
Sbjct: 106 PEGGTVASLP 115


>sp|HEM3_METAC|PROBABLE porphobilinogen deaminase|Methanosarcina acetivorans (strain ATCC

Query: 2 DGSTCCELP 10
DG+T ELP
Sbjct: 106 DGTTLDELP 114


>sp|SYFB_PYRAE|PHENYLALANINE--TRNA ligase beta subunit|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 GSTCCEL 9
GS CC++
Sbjct: 207 GSECCKI 213


>sp|MPTE_METJA|6-HYDROXYMETHYL-7,8-DIHYDROPTERIN pyrophosphokinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 DGSTCCEL 9
DG CC L
Sbjct: 171 DGDRCCFL 178


>sp|HDRB_METKA|COB--COM heterodisulfide reductase subunit B|Methanopyrus kandleri (strain

Query: 2 DGSTCCELP 10
DG++CC P
Sbjct: 39 DGASCCPAP 47




45|Sequence|221|230|CCELPSGKYG

>sp|PURL_METS5|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Metallosphaera sedula (strain ATCC 51363

Query: 3 ELPSGKY 9
ELP+GKY
Sbjct: 419 ELPNGKY 425


>sp|NFI_PYRFU|ENDONUCLEASE V|Pyrococcus furiosus (strain ATCC 43587

Query: 1 CCELPSGK 8
C E PSG+
Sbjct: 49 CVEFPSGE 56


>sp|LYSJ_THEKO|PUTATIVE [LysW]-aminoadipate semialdehyde/glutamate semialdehyde

Query: 3 ELPSGKYG 10
E+P GK+G
Sbjct: 246 EIPRGKHG 253


>sp|HICDH_PYRHO|ISOCITRATE/HOMOISOCITRATE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 LPSGKYG 10
+PSG YG
Sbjct: 234 VPSGNYG 240


>sp|ISCS2_ARCFU|CYSTEINE desulfurase IscS 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 LPSGKYG 10
+P GKYG
Sbjct: 118 IPVGKYG 124


>sp|SDO1_ARCFU|RIBOSOME maturation protein SDO1 homolog|Archaeoglobus fulgidus (strain ATCC

Query: 4 LPSGKYG 10
+PSG YG
Sbjct: 205 IPSGMYG 211


>sp|SLAA_SULAC|S-LAYER protein A|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 LPSGKY 9
LP+GKY
Sbjct: 1388 LPAGKY 1393


>sp|Y540_ARCFU|UNCHARACTERIZED protein AF_0540|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 LPSGKYG 10
LP G+YG
Sbjct: 48 LPPGEYG 54


>sp|HISX_SACS2|HISTIDINOL dehydrogenase|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 LPSGKY 9
+PSGKY
Sbjct: 115 VPSGKY 120


>sp|RL2_NITMS|LARGE ribosomal subunit protein uL2|Nitrosopumilus maritimus (strain

Query: 3 ELPSGKY 9
+LPSGK+
Sbjct: 141 KLPSGKF 147


>sp|GATA_METHJ|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanospirillum hungatei JF-1 (strain

Query: 2 CELPSGKYG 10
C +PS KY
Sbjct: 252 CTIPSMKYA 260


>sp|AROK_METMA|SHIKIMATE kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 CCELPSGKYG 10
C EL G++G
Sbjct: 64 CVELVLGRFG 73




46|Sequence|226|235|SGKYGCCPMP

>sp|SIHH_METMA|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GKYGCC 7
KYGCC
Sbjct: 94 AKYGCC 99


>sp|ASNH1_METJA|PUTATIVE asparagine synthetase [glutamine-hydrolyzing]

Query: 2 GKYGCCPMP 10
G+YG P+P
Sbjct: 73 GRYGVQPIP 81


>sp|NADA_METKA|QUINOLINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 3 KYGCCPM 9
++GCCP+
Sbjct: 154 EHGCCPV 160


>sp|SIHH_METAC|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 GKYGCC 7
+YGCC
Sbjct: 94 ARYGCC 99


>sp|RPO1N_METVS|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanococcus vannielii (strain ATCC

Query: 1 SGKYGCCP 8
SG+ G CP
Sbjct: 66 SGRVGTCP 73


>sp|Y1125_METJA|UNCHARACTERIZED protein MJ1125|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 GCCPMP 10
GCC MP
Sbjct: 40 GCCGMP 45


>sp|MFNA_METJA|L-TYROSINE/L-ASPARTATE decarboxylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 KYGCCPMP 10
K G CP+P
Sbjct: 245 KMGHCPIP 252


>sp|HDRB1_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 3 KYGCCPMP 10
K CCP P
Sbjct: 38 KASCCPAP 45


>sp|MALE_THELN|TREHALOSE/MALTOSE-BINDING protein MalE|Thermococcus litoralis (strain ATCC 51850

Query: 2 GKYGCCPMP 10
GK G P+P
Sbjct: 313 GKVGVAPLP 321


>sp|Y1470_METJA|UNCHARACTERIZED protein MJ1470|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SGKYGCCPMP 10
S KYG P+P
Sbjct: 513 STKYGYYPVP 522


>sp|HDRB_METTM|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 6 CCPMP 10
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB_METTH|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 6 CCPMP 10
CCP P
Sbjct: 41 CCPAP 45


>sp|MCRA_METTM|METHYL-COENZYME M reductase I subunit|Methanothermobacter marburgensis (strain ATCC

Query: 3 KYGCCPMP 10
KYG C P
Sbjct: 357 KYGLCEAP 364


>sp|MCRA_METTH|METHYL-COENZYME M reductase subunit alpha|Methanothermobacter thermautotrophicus

Query: 3 KYGCCPMP 10
KYG C P
Sbjct: 357 KYGLCEAP 364


>sp|CCA_METB6|CCA-ADDING enzyme|Methanoregula boonei (strain DSM 21154

Query: 3 KYGCCP 8
+Y CCP
Sbjct: 267 EYPCCP 272


>sp|NADA_METB6|QUINOLINATE synthase|Methanoregula boonei (strain DSM 21154

Query: 5 GCCPM 9
CCPM
Sbjct: 85 ACCPM 89


>sp|CYDE_METM5|L-CYSTEINE desulfidase|Methanococcus maripaludis (strain C5 /

Query: 1 SGKYGCCP 8
+GKYG P
Sbjct: 67 TGKYGLLP 74


>sp|HDRB2_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B2|Methanococcus

Query: 6 CCPMP 10
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B1|Methanococcus

Query: 6 CCPMP 10
CCP P
Sbjct: 46 CCPAP 50


>sp|CYDE_METM6|L-CYSTEINE desulfidase|Methanococcus maripaludis (strain C6 /

Query: 1 SGKYGCCP 8
+GKYG P
Sbjct: 67 TGKYGILP 74


>sp|GSA_NATPD|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 KYGCCP 8
+YG CP
Sbjct: 382 RYGTCP 387


>sp|HDRB2_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 6 CCPMP 10
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB_METKA|COB--COM heterodisulfide reductase subunit B|Methanopyrus kandleri (strain

Query: 6 CCPMP 10
CCP P
Sbjct: 43 CCPAP 47




47|Sequence|231|240|CCPMPNATCC

>sp|ILVD_METB6|DIHYDROXY-ACID dehydratase|Methanoregula boonei (strain DSM 21154

Query: 1 CCPMPNATCC 10
CC MP C
Sbjct: 185 CCAMPGCGSC 194


>sp|ARLY_PYRAR|ARGININOSUCCINATE lyase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 CPMPNAT 8
CPMP+ T
Sbjct: 143 CPMPSFT 149


>sp|ARLY_PYRAE|ARGININOSUCCINATE lyase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 CPMPNAT 8
CPMP+ T
Sbjct: 143 CPMPSFT 149


>sp|HDRB2_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B2|Methanococcus

Query: 4 MPNATCC 10
MP A+CC
Sbjct: 36 MPGASCC 42


>sp|NADA_THEKO|QUINOLINATE synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 PMPNATC 9
P P ATC
Sbjct: 80 PTPRATC 86


>sp|HDRB2_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 4 MPNATCC 10
MP A+CC
Sbjct: 36 MPGASCC 42


>sp|HDRB_METMA|FERREDOXIN:COB-COM heterodisulfide reductase subunit B|Methanosarcina mazei (strain

Query: 2 CPMPNATCC 10
C +P A+CC
Sbjct: 35 CDLPGASCC 43


>sp|PLS_PYRFU|PYROLYSIN furiosus (strain ATCC 43587

Query: 3 PMPNAT 8
P+PNAT
Sbjct: 1130 PVPNAT 1135




48|Sequence|236|245|NATCCSDHLH

>sp|RTCB_METKA|TRNA-SPLICING ligase RtcB|Methanopyrus kandleri (strain AV19 /

Query: 5 CSDHL 9
CSDHL
Sbjct: 743 CSDHL 747


>sp|RGYR1_SULTO|REVERSE gyrase 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 ATCCSD 7
++CCSD
Sbjct: 1099 SSCCSD 1104


>sp|UVRC_HALWD|UVRABC system protein C|Haloquadratum walsbyi (strain DSM 16790

Query: 1 NATCCSDHLH 10
+A CS+H H
Sbjct: 318 DAILCSEHPH 327


>sp|COBQ_METPE|PROBABLE cobyric acid synthase|Methanosphaerula palustris (strain ATCC

Query: 3 TCCSDH 8
T CSDH
Sbjct: 476 TLCSDH 481




49|Sequence|241|250|SDHLHCCPQD

>sp|PIMT_METB6|PROTEIN-L-ISOASPARTATE O-methyltransferase|Methanoregula boonei (strain DSM 21154

Query: 1 SDHLHCCPQD 10
++ LH CP+D
Sbjct: 74 TELLHPCPED 83


>sp|ACYP_METBU|ACYLPHOSPHATASE burtonii (strain DSM 6242

Query: 2 DHLHCCPQ 9
DHLH P+
Sbjct: 64 DHLHIGPE 71


>sp|CCA_METB6|CCA-ADDING enzyme|Methanoregula boonei (strain DSM 21154

Query: 6 CCPQD 10
CCP D
Sbjct: 270 CCPAD 274


>sp|WECC_PYRHO|UDP-N-ACETYL-D-MANNOSAMINE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 HCCPQD 10
HC P+D
Sbjct: 257 HCLPKD 262


>sp|Y3513_METJA|MCM-LIKE protein MJECL13|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 HLHCCPQ 9
HL+ CP+
Sbjct: 135 HLYICPK 141




50|Sequence|246|255|CCPQDTVCDL

>sp|AATA_METLZ|A-TYPE ATP synthase subunit A|Methanocorpusculum labreanum (strain ATCC

Query: 3 PQDTVCDL 10
P DT CDL
Sbjct: 506 PVDTYCDL 513


>sp|AATA1_METHJ|A-TYPE ATP synthase subunit A|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 PQDTVCDL 10
P DT CD+
Sbjct: 505 PVDTYCDM 512


>sp|TFE_SULTO|TRANSCRIPTION factor E|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 CPQDTV 7
CPQD +
Sbjct: 118 CPQDNI 123


>sp|TFE_SULAC|TRANSCRIPTION factor E|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 CPQDTV 7
CPQD +
Sbjct: 110 CPQDNI 115


>sp|TRPG_METTH|ANTHRANILATE synthase component 2|Methanothermobacter thermautotrophicus (strain

Query: 1 CCPQDTVCDL 10
C P+DT D+
Sbjct: 141 CRPEDTPADI 150


>sp|SYA_AERPE|ALANINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 3 PQDTVC 8
PQDT C
Sbjct: 25 PQDTPC 30


>sp|PCCA_HALMT|PROPIONYL-COA carboxylase, biotin carboxylase and|Haloferax mediterranei (strain

Query: 3 PQDTVCDL 10
P DTVC L
Sbjct: 556 PGDTVCIL 563


>sp|PYRC_METST|DIHYDROOROTASE stadtmanae (strain ATCC 43021

Query: 5 DTVCDL 10
DT+CD+
Sbjct: 41 DTICDI 46


>sp|RSMA_METMA|PROBABLE ribosomal RNA small subunit|Methanosarcina mazei (strain ATCC

Query: 3 PQDTVCDL 10
PQDTV ++
Sbjct: 38 PQDTVLEI 45


>sp|TRMY_METHJ|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanospirillum

Query: 4 QDTVCDL 10
+DT CD+
Sbjct: 48 EDTTCDI 54


>sp|Y911_METJA|MAGNESIUM-CHELATASE subunit ChlI homolog|Methanocaldococcus jannaschii (strain ATCC

Query: 1 CCPQDTVCDL 10
C P +CD+
Sbjct: 69 CDPNGNLCDI 78




51|Sequence|251|260|TVCDLIQSKC

>sp|Y1070_METJA|UNCHARACTERIZED protein MJ1070|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VCDLIQSKC 10
+C LI KC
Sbjct: 149 ICFLIYKKC 157




52|Sequence|256|265|IQSKCLSKEN

>sp|Y3534_METJA|UNCHARACTERIZED protein MJECL34|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 IQSKCLSKE 9
IQ KC +KE
Sbjct: 287 IQKKCENKE 295


>sp|COFD_METVS|2-PHOSPHO-L-LACTATE transferase|Methanococcus vannielii (strain ATCC 35089

Query: 1 IQSKCLSKEN 10
+QSK L +EN
Sbjct: 136 VQSKILIEEN 145


>sp|FERCR_ARCFU|FERRIC-CHELATE reductase (NAD(P)H)|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 CLSKEN 10
CL+KEN
Sbjct: 45 CLNKEN 50




53|Sequence|261|270|LSKENATTDL

>sp|Y706_METBF|UPF0288 protein Mbar_A0706|Methanosarcina barkeri (strain Fusaro /

Query: 1 LSKENATTDL 10
+S++N TTDL
Sbjct: 190 ISEKNCTTDL 199


>sp|GCSPB_THEON|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermococcus

Query: 2 SKENATTDL 10
S EN T DL
Sbjct: 192 SNENGTVDL 200


>sp|GCSPB_THEGJ|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermococcus

Query: 2 SKENATTDL 10
S EN T DL
Sbjct: 192 SNENGTVDL 200


>sp|GCSPB_PYRAB|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Pyrococcus abyssi

Query: 2 SKENATTDL 10
S EN T DL
Sbjct: 192 SNENGTVDL 200


>sp|GCSPB_THEKO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermococcus

Query: 2 SKENATTDL 10
S EN T DL
Sbjct: 192 SNENGTVDL 200


>sp|GCSPB_PYRHO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Pyrococcus

Query: 2 SKENATTDL 10
S EN T DL
Sbjct: 192 SNENGTVDL 200




54|Sequence|266|275|ATTDLLTKLP

>sp|NNR_KORCO|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Korarchaeum cryptofilum (strain

Query: 3 TDLLTKLP 10
TD+L KLP
Sbjct: 486 TDILEKLP 493


>sp|Y995_META3|UPF0288 protein Maeo_0995|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 TTDLLTKL 9
TTDL TKL
Sbjct: 183 TTDLNTKL 190




55|Sequence|271|280|LTKLPAHTVG

>sp|THIC1_METMA|PHOSPHOMETHYLPYRIMIDINE synthase 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LTKLPAHTV 9
+TKL AHT+
Sbjct: 343 VTKLAAHTI 351


>sp|THIC1_METAC|PHOSPHOMETHYLPYRIMIDINE synthase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 LTKLPAHTV 9
+TKL AHT+
Sbjct: 343 VTKLAAHTI 351


>sp|DNLI1_METBF|DNA ligase 1|Methanosarcina barkeri (strain Fusaro /

Query: 1 LTKLPAHTVG 10
+T+ P+HT G
Sbjct: 498 ITESPSHTAG 507


>sp|METK_NATPD|S-ADENOSYLMETHIONINE synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 TKLPAHTVG 10
TK+PA T+
Sbjct: 101 TKIPAETIA 109


>sp|HCGB_METJA|PYRIDINOL guanylyltransferase HcgB|Methanocaldococcus jannaschii (strain

Query: 1 LTKLPAHTVG 10
LT++PA T G
Sbjct: 78 LTRMPALTKG 87


>sp|MPGP_PYRFU|MANNOSYL-3-PHOSPHOGLYCERATE phosphatase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LTKLPAHTV 9
TKLP H +
Sbjct: 126 FTKLPKHLI 134


>sp|NNRD_NITMS|ADP-DEPENDENT (S)-NAD(P)H-hydrate dehydratase|Nitrosopumilus maritimus (strain

Query: 3 KLPAHTVG 10
K+PA TVG
Sbjct: 214 KIPAMTVG 221


>sp|DNLI1_METMA|DNA ligase 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LTKLPAHTVG 10
+T P HT G
Sbjct: 530 ITNSPGHTAG 539


>sp|DNLI1_METAC|DNA ligase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 LTKLPAHTVG 10
+T P HT G
Sbjct: 531 ITNSPGHTAG 540


>sp|GCSPB_SACI7|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LTKLPAHTVG 10
L+K+P ++VG
Sbjct: 318 LSKIPKNSVG 327


>sp|GCSPB_SACI6|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LTKLPAHTVG 10
L+K+P ++VG
Sbjct: 318 LSKIPKNSVG 327


>sp|GCSPB_SACI4|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LTKLPAHTVG 10
L+K+P ++VG
Sbjct: 318 LSKIPKNSVG 327


>sp|GCSPB_SACI3|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LTKLPAHTVG 10
L+K+P ++VG
Sbjct: 318 LSKIPKNSVG 327


>sp|GCSPB_SACI2|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LTKLPAHTVG 10
L+K+P ++VG
Sbjct: 318 LSKIPKNSVG 327


>sp|GCSPB_SACI1|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 LTKLPAHTVG 10
L+K+P ++VG
Sbjct: 318 LSKIPKNSVG 327


>sp|THIC2_METBF|PHOSPHOMETHYLPYRIMIDINE synthase 2|Methanosarcina barkeri (strain Fusaro /

Query: 1 LTKLPAHTV 9
+TK+ AHT+
Sbjct: 343 VTKVAAHTI 351




56|Sequence|276|285|AHTVGDVKCD

>sp|Y403_METJA|MEMO1 family protein MJ0403|Methanocaldococcus jannaschii (strain ATCC

Query: 4 VGDVKCD 10
+GDVKCD
Sbjct: 108 LGDVKCD 114


>sp|AGLB1_PYRFU|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase 1|Pyrococcus furiosus (strain ATCC 43587

Query: 3 TVGDVKCD 10
TVGD +CD
Sbjct: 632 TVGDRECD 639


>sp|HEM1_METMA|GLUTAMYL-TRNA reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 HTVGDVKCD 10
HT+GD++ +
Sbjct: 361 HTIGDIETE 369


>sp|RIFK_METHJ|RIBOFLAVIN kinase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 TVGDVKC 9
T GDV+C
Sbjct: 164 TFGDVRC 170


>sp|PYRC_METMA|DIHYDROOROTASE mazei (strain ATCC BAA-159

Query: 5 GDVKCD 10
GDV CD
Sbjct: 196 GDVSCD 201


>sp|Y1002_PYRHO|UPF0282 protein PH1002|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 AHTVGDVK 8
AH VG+VK
Sbjct: 215 AHRVGNVK 222


>sp|GPMI1_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 1|Methanosarcina barkeri (strain Fusaro /

Query: 1 AHTVGDVKC 9
AHT VKC
Sbjct: 466 AHTSNPVKC 474


>sp|SYA_THEAC|ALANINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 HTVGDVKCD 10
+T GD CD
Sbjct: 38 NTCGDTPCD 46


>sp|SYA_METMA|ALANINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 HTVGDVKCD 10
+T GD CD
Sbjct: 36 NTCGDAPCD 44


>sp|SYA_METAC|ALANINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 HTVGDVKCD 10
+T GD CD
Sbjct: 36 NTCGDAPCD 44


>sp|MTAB_METBF|METHANOL--CORRINOID protein co-methyltransferase|Methanosarcina barkeri (strain Fusaro

Query: 2 HTVGDVK 8
HT+GD++
Sbjct: 124 HTIGDIR 130


>sp|GPMI2_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanosarcina barkeri (strain Fusaro /

Query: 1 AHTVGDVKC 9
AHT VKC
Sbjct: 473 AHTSNPVKC 481


>sp|GPMI_METMA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 AHTVGDVKC 9
AHT VKC
Sbjct: 469 AHTSNPVKC 477


>sp|GLPK2_SULAC|GLYCEROL kinase 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 AHTVGDVKC 9
A GDVKC
Sbjct: 251 AFNQGDVKC 259


>sp|DHQS_CENSY|3-DEHYDROQUINATE synthase|Cenarchaeum symbiosum (strain A)

Query: 1 AHTVGDVK 8
A TVGDV+
Sbjct: 139 ASTVGDVR 146


>sp|LEUC1_PYRAB|3-ISOPROPYLMALATE dehydratase large subunit 1|Pyrococcus abyssi (strain GE5 /

Query: 2 HTVGDV 7
HT+GD+
Sbjct: 181 HTIGDI 186


>sp|AROC_THEVO|CHORISMATE synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 TVGDVKCD 10
++G+V CD
Sbjct: 159 SIGEVTCD 166


>sp|SYA_THEVO|ALANINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 TVGDVKCD 10
T GD CD
Sbjct: 39 TCGDTPCD 46


>sp|AROC_THEAC|CHORISMATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 TVGDVKC 9
++GDV+C
Sbjct: 157 SIGDVEC 163


>sp|SYA_METJA|ALANINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 TVGDVKCD 10
T GD CD
Sbjct: 36 TCGDAPCD 43


>sp|RTCA_CALMQ|RNA 3'-terminal phosphate cyclase|Caldivirga maquilingensis (strain

Query: 5 GDVKC 9
GDVKC
Sbjct: 78 GDVKC 82


>sp|RS7_METHJ|SMALL ribosomal subunit protein uS7|Methanospirillum hungatei JF-1

Query: 5 GDVKC 9
GDVKC
Sbjct: 173 GDVKC 177


>sp|GLPK1_SULAC|GLYCEROL kinase 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 5 GDVKC 9
GDVKC
Sbjct: 253 GDVKC 257


>sp|DP2L_METVS|DNA polymerase II large subunit|Methanococcus vannielii (strain ATCC

Query: 5 GDVKC 9
GDVKC
Sbjct: 711 GDVKC 715


>sp|DP2L_METMP|DNA polymerase II large subunit|Methanococcus maripaludis (strain DSM

Query: 5 GDVKC 9
GDVKC
Sbjct: 711 GDVKC 715


>sp|DP2L_METJA|DNA polymerase II large subunit|Methanocaldococcus jannaschii (strain

Query: 5 GDVKC 9
GDVKC
Sbjct: 717 GDVKC 721


>sp|SYA_METBF|ALANINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 3 TVGDVKCD 10
T GD CD
Sbjct: 37 TCGDAPCD 44


>sp|PURQ_PICTO|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Picrophilus torridus (strain ATCC 700027

Query: 1 AHTVGDVKCD 10
AH G V CD
Sbjct: 152 AHLEGRVYCD 161


>sp|DP2L_METM6|DNA polymerase II large subunit|Methanococcus maripaludis (strain C6 /

Query: 5 GDVKC 9
GDVKC
Sbjct: 711 GDVKC 715


>sp|DP2L_METM5|DNA polymerase II large subunit|Methanococcus maripaludis (strain C5 /

Query: 5 GDVKC 9
GDVKC
Sbjct: 711 GDVKC 715


>sp|SYA_METTH|ALANINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 TVGDVKCD 10
T GD CD
Sbjct: 33 TCGDAPCD 40


>sp|DP2L_METM7|DNA polymerase II large subunit|Methanococcus maripaludis (strain C7 /

Query: 5 GDVKC 9
GDVKC
Sbjct: 711 GDVKC 715


>sp|SYA_METBU|ALANINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 3 TVGDVKCD 10
T GD CD
Sbjct: 37 TCGDAPCD 44


>sp|SYA_METST|ALANINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 TVGDVKCD 10
T GD CD
Sbjct: 30 TCGDAPCD 37


>sp|SYA_METS3|ALANINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 TVGDVKCD 10
T GD CD
Sbjct: 30 TCGDAPCD 37


>sp|Y3504_METJA|UNCHARACTERIZED protein MJECL04|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 HTVGDVK 8
HT+G++K
Sbjct: 242 HTLGEIK 248


>sp|HIS6_IGNH4|IMIDAZOLE glycerol phosphate synthase subunit|Ignicoccus hospitalis (strain

Query: 3 TVGDVK 8
TVGDVK
Sbjct: 235 TVGDVK 240




57|Sequence|281|290|DVKCDMEVSC

>sp|Y403_METJA|MEMO1 family protein MJ0403|Methanocaldococcus jannaschii (strain ATCC

Query: 1 DVKCDME 7
DVKCD E
Sbjct: 110 DVKCDEE 116


>sp|Y3407_METJA|UNCHARACTERIZED protein MJECS07|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 DVKCDMEVS 9
D+K D+E++
Sbjct: 295 DIKIDLEIN 303


>sp|Y3503_METJA|UNCHARACTERIZED protein MJECL03|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VKCDMEVS 9
+KCD+E++
Sbjct: 16 IKCDLELT 23




58|Sequence|286|295|MEVSCPDGYT

>sp|OTC_METST|ORNITHINE carbamoyltransferase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 MEVSCPDGY 9
M V+CP+GY
Sbjct: 172 MTVACPEGY 180


>sp|OTC_METS3|ORNITHINE carbamoyltransferase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 MEVSCPDGY 9
M V+CP+GY
Sbjct: 172 MSVACPEGY 180


>sp|OTC_METTH|ORNITHINE carbamoyltransferase|Methanothermobacter thermautotrophicus (strain

Query: 1 MEVSCPDGY 9
M+V+CP GY
Sbjct: 170 MDVACPPGY 178


>sp|AATB_METJA|A-TYPE ATP synthase subunit B|Methanocaldococcus jannaschii (strain ATCC

Query: 1 MEVSCPDG 8
+EV CPDG
Sbjct: 35 VEVICPDG 42


>sp|IF1A_THEAC|TRANSLATION initiation factor 1A|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 MEVSCPDGYT 10
+ V C DGYT
Sbjct: 49 LSVMCEDGYT 58


>sp|IF1A_THEVO|TRANSLATION initiation factor 1A|Thermoplasma volcanium (strain ATCC 51530

Query: 1 MEVSCPDGYT 10
+ V C DGYT
Sbjct: 53 LSVMCEDGYT 62


>sp|OTC_METMA|ORNITHINE carbamoyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 VSCPDGY 9
++CP+GY
Sbjct: 179 IACPEGY 185


>sp|OTC_METAC|ORNITHINE carbamoyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 VSCPDGY 9
V+CP GY
Sbjct: 179 VACPKGY 185


>sp|OTC_METBF|ORNITHINE carbamoyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 3 VSCPDGY 9
V+CP GY
Sbjct: 179 VACPKGY 185


>sp|Y1159_THEAC|UPF0179 protein Ta1159|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 EVSCPDGY 9
E+ CP GY
Sbjct: 131 EIKCPKGY 138


>sp|NTPTH_PYRNV|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 MEVSCPD 7
MEV CP+
Sbjct: 111 MEVKCPN 117


>sp|FSX1_HALSH|FUSEXIN 1|Haloplanus natans (strain DSM 17983

Query: 4 SCPDG 8
SCPDG
Sbjct: 486 SCPDG 490


>sp|DTDA_METB6|D-AMINOACYL-TRNA deacylase|Methanoregula boonei (strain DSM 21154

Query: 5 CPDGY 9
CP+GY
Sbjct: 115 CPEGY 119


>sp|SYK_METJA|LYSINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EVSCPDG 8
E+ CP+G
Sbjct: 90 EIPCPEG 96


>sp|GATB_SULTO|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Sulfurisphaera tokodaii (strain DSM

Query: 4 SCPDGYT 10
SCP YT
Sbjct: 22 SCPSDYT 28


>sp|SYS_METAC|SERINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 MEVSCPDGY 9
M + C DGY
Sbjct: 217 MYLCCADGY 225


>sp|IF1A_THEKO|TRANSLATION initiation factor 1A|Thermococcus kodakarensis (strain ATCC

Query: 1 MEVSCPDG 8
M+V C DG
Sbjct: 42 MDVRCEDG 49


>sp|IF1A_PYRHO|TRANSLATION initiation factor 1A|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 MEVSCPDG 8
M+V C DG
Sbjct: 39 MDVRCEDG 46


>sp|IF1A_PYRFU|TRANSLATION initiation factor 1A|Pyrococcus furiosus (strain ATCC 43587

Query: 1 MEVSCPDG 8
M+V C DG
Sbjct: 39 MDVRCEDG 46


>sp|IF1A_PYRAB|TRANSLATION initiation factor 1A|Pyrococcus abyssi (strain GE5 /

Query: 1 MEVSCPDG 8
M+V C DG
Sbjct: 37 MDVRCEDG 44


>sp|GATB_SACS2|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Saccharolobus solfataricus (strain

Query: 4 SCPDGYT 10
SCP YT
Sbjct: 22 SCPSDYT 28


>sp|GUAAA_HALSA|GMP synthase [glutamine-hydrolyzing] subunit A|Halobacterium salinarum

Query: 3 VSCPDGYT 10
V+ PDG+T
Sbjct: 129 VAVPDGFT 136


>sp|SYK_METST|LYSINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 EVSCPDG 8
E+ CP+G
Sbjct: 91 EIPCPEG 97


>sp|Y042_METJA|UNCHARACTERIZED protein MJ0042|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MEVSCP 6
MEV CP
Sbjct: 24 MEVKCP 29


>sp|GLMM_METMP|PHOSPHOGLUCOSAMINE mutase|Methanococcus maripaludis (strain DSM 14266

Query: 2 EVSCPD 7
++SCPD
Sbjct: 364 KISCPD 369


>sp|PUR2_METKA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanopyrus kandleri (strain AV19 /

Query: 4 SCPDG 8
SCPDG
Sbjct: 240 SCPDG 244


>sp|Y851_PICTO|UPF0179 protein PTO0851|Picrophilus torridus (strain ATCC 700027

Query: 3 VSCPDGY 9
+ CP GY
Sbjct: 130 IECPKGY 136


>sp|FSR_METJA|COENZYME F420-dependent sulfite reductase|Methanocaldococcus jannaschii

Query: 3 VSCPDGYT 10
V PDGY+
Sbjct: 274 VGSPDGYS 281


>sp|IF1A_META3|TRANSLATION initiation factor 1A|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 MEVSCPDGYT 10
+ V C DG+T
Sbjct: 37 VRVRCMDGHT 46


>sp|RF1_HALWD|PEPTIDE chain release factor subunit|Haloquadratum walsbyi (strain DSM

Query: 5 CPDGY 9
CPDG+
Sbjct: 335 CPDGH 339




59|Sequence|291|300|PDGYTCCRLQ

>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 PDGYTC-CRL 9
PDG TC CR+
Sbjct: 1032 PDGETCSCRV 1041


>sp|PTH_META3|PEPTIDYL-TRNA hydrolase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 DGYTCCRLQ 10
DG++CC ++
Sbjct: 73 DGFSCCLIR 81


>sp|RL3_METKA|LARGE ribosomal subunit protein uL3|Methanopyrus kandleri (strain AV19 /

Query: 1 PDGYTC 6
PDGY C
Sbjct: 96 PDGYRC 101


>sp|RL2_CENSY|LARGE ribosomal subunit protein uL2|Cenarchaeum symbiosum (strain A)

Query: 1 PDGYTCCRLQ 10
PDG T C ++
Sbjct: 101 PDGTTVCNVE 110


>sp|SYE_METJA|GLUTAMATE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 DGYTCC 7
DG+ CC
Sbjct: 544 DGFVCC 549


>sp|TFRB_METTM|FUMARATE reductase (CoM/CoB) subunit B|Methanothermobacter marburgensis

Query: 1 PDGYTCC 7
PDG CC
Sbjct: 294 PDGQVCC 300


>sp|HIS6_METPE|IMIDAZOLE glycerol phosphate synthase subunit|Methanosphaerula palustris

Query: 1 PDGYTC 6
PDG TC
Sbjct: 148 PDGTTC 153


>sp|THI4_METJA|THIAMINE thiazole synthase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PDGYTCCR 8
P G TC R
Sbjct: 46 PSGLTCAR 53


>sp|SYK_HALMA|LYSINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 PDGYTCC 7
PD + CC
Sbjct: 120 PDPFGCC 126


>sp|SYK_HALSA|LYSINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 PDGYTCC 7
PD + CC
Sbjct: 121 PDPFGCC 127


>sp|SYK_NATPD|LYSINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PDGYTCC 7
PD + CC
Sbjct: 119 PDPFGCC 125


>sp|MER_METTM|5,10-METHYLENETETRAHYDROMETHANOPTERIN reductase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 3 GYTCCRL 9
YTCC +
Sbjct: 203 AYTCCSI 209


>sp|MER_METTH|5,10-METHYLENETETRAHYDROMETHANOPTERIN reductase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 GYTCCRL 9
YTCC +
Sbjct: 203 AYTCCSI 209


>sp|Y1214_METKA|UPF0210 protein MK1214|Methanopyrus kandleri (strain AV19 /

Query: 2 DGYTCCRL 9
DG+ C RL
Sbjct: 183 DGHGCARL 190


>sp|OTC_METKA|ORNITHINE carbamoyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 1 PDGYTC 6
P+GY C
Sbjct: 188 PEGYEC 193


>sp|PURO_META3|IMP cyclohydrolase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 YTCCRL 9
Y CCR+
Sbjct: 151 YECCRI 156




60|Sequence|296|305|CCRLQSGAWG

>sp|ENO_METLZ|ENOLASE labreanum (strain ATCC 43576

Query: 1 CCRLQSGAWG 10
CC ++SG G
Sbjct: 373 CCFMKSGVVG 382


>sp|SYFA_METTH|PHENYLALANINE--TRNA ligase alpha subunit|Methanothermobacter thermautotrophicus (strain

Query: 4 LQSGAW 9
L+SGAW
Sbjct: 220 LKSGAW 225


>sp|SYFA_METMA|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 LQSGAW 9
L+SGAW
Sbjct: 209 LKSGAW 214


>sp|SYFA_METBF|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina barkeri (strain Fusaro /

Query: 4 LQSGAW 9
L+SGAW
Sbjct: 206 LKSGAW 211


>sp|SYFA_METAC|PHENYLALANINE--TRNA ligase alpha subunit|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 LQSGAW 9
L+SGAW
Sbjct: 206 LKSGAW 211




61|Sequence|301|310|SGAWGCCPFT

>sp|SYG_AERPE|GLYCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 4 WGCCPF 9
WG CPF
Sbjct: 228 WGSCPF 233


>sp|PRIL_METKA|DNA primase large subunit PriL|Methanopyrus kandleri (strain AV19 /

Query: 3 AWGCCP 8
AWG CP
Sbjct: 380 AWGLCP 385


>sp|AROA_METLZ|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanocorpusculum labreanum (strain ATCC

Query: 5 GCCPFT 10
GC PFT
Sbjct: 141 GCAPFT 146


>sp|HIS8_METVS|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus vannielii (strain ATCC 35089

Query: 4 WGCCP 8
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METMP|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain DSM 14266

Query: 4 WGCCP 8
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METM7|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C7 /

Query: 4 WGCCP 8
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METM6|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C6 /

Query: 4 WGCCP 8
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METM5|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C5 /

Query: 4 WGCCP 8
WGC P
Sbjct: 47 WGCSP 51


>sp|TREH_THEVO|TREHALASE volcanium (strain ATCC 51530

Query: 4 WGCCP 8
WGC P
Sbjct: 53 WGCLP 57


>sp|TREH_THEAC|TREHALASE acidophilum (strain ATCC 25905

Query: 4 WGCCP 8
WGC P
Sbjct: 11 WGCLP 15


>sp|NADA_METKA|QUINOLINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 5 GCCP 8
GCCP
Sbjct: 156 GCCP 159


>sp|ENO_METTP|ENOLASE thermoacetophila (strain DSM 6194

Query: 4 WGCCPF 9
W CC F
Sbjct: 27 WTCCGF 32


>sp|AGLB1_PYRHO|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase 1|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GAWGCCPF 9
GAW PF
Sbjct: 211 GAWNGSPF 218


>sp|Y753_METJA|UNCHARACTERIZED protein MJ0753|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 AWGCCPF 9
AW CP+
Sbjct: 25 AWNDCPY 31


>sp|RS2_STAMF|SMALL ribosomal subunit protein uS2|Staphylothermus marinus (strain ATCC

Query: 5 GCCPFT 10
GC PFT
Sbjct: 107 GCKPFT 112


>sp|YJ16_PYRHO|PROBABLE ABC transporter permease protein|Pyrococcus horikoshii (strain

Query: 1 SGAWGCCPFT 10
SG W PFT
Sbjct: 40 SGWWHLHPFT 49


>sp|ARGJ_METMA|GLUTAMATE N-acetyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 AWGC 6
AWGC
Sbjct: 377 AWGC 380


>sp|ARGJ_METKA|GLUTAMATE N-acetyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 3 AWGC 6
AWGC
Sbjct: 369 AWGC 372


>sp|ARGJ_METAC|GLUTAMATE N-acetyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 AWGC 6
AWGC
Sbjct: 377 AWGC 380


>sp|SPEH_METJA|S-ADENOSYLMETHIONINE decarboxylase proenzyme|Methanocaldococcus jannaschii (strain

Query: 4 WGCCP 8
WGC P
Sbjct: 14 WGCDP 18


>sp|RS5_METTH|SMALL ribosomal subunit protein uS5|Methanothermobacter

Query: 2 GAWGC 6
G WGC
Sbjct: 119 GDWGC 123


>sp|RS5_METS3|SMALL ribosomal subunit protein uS5|Methanobrevibacter smithii (strain

Query: 2 GAWGC 6
G WGC
Sbjct: 117 GDWGC 121


>sp|Y1468_METJA|UNCHARACTERIZED protein MJ1468|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SGAWG 5
SGAWG
Sbjct: 319 SGAWG 323


>sp|HDRD_METTT|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina thermophila

Query: 6 CCPF 9
CCPF
Sbjct: 372 CCPF 375


>sp|HDRD_METMA|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina mazei (strain

Query: 6 CCPF 9
CCPF
Sbjct: 372 CCPF 375




62|Sequence|306|315|CCPFTQAVCC

>sp|HDRB1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B1|Methanococcus

Query: 3 PFTQAVCC 10
PF QA CC
Sbjct: 40 PFEQASCC 47


>sp|DP2L_METST|DNA polymerase II large subunit|Methanosphaera stadtmanae (strain ATCC

Query: 4 FTQAVCC 10
FT+A CC
Sbjct: 848 FTKASCC 854


>sp|HDRB1_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 3 PFTQAVCC 10
PF +A CC
Sbjct: 35 PFEKASCC 42


>sp|HIS6_NATPD|IMIDAZOLE glycerol phosphate synthase subunit|Natronomonas pharaonis (strain

Query: 3 PFTQAVC 9
P T+AVC
Sbjct: 205 PLTKAVC 211


>sp|PYRK_METAR|PROBABLE dihydroorotate dehydrogenase B (NAD(+)),|Methanocella arvoryzae

Query: 4 FTQAVCC 10
FTQ CC
Sbjct: 172 FTQIYCC 178


>sp|TRM1_METPE|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosphaerula palustris

Query: 3 PFTQAVC 9
PFT A C
Sbjct: 131 PFTDAAC 137




63|Sequence|311|320|QAVCCEDHIH

>sp|CDC62_METMA|ORC1-TYPE DNA replication protein 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 VCCEDH 8
+CCE H
Sbjct: 147 LCCEGH 152


>sp|CDC62_METAC|ORC1-TYPE DNA replication protein 2|Methanosarcina acetivorans (strain ATCC

Query: 3 VCCEDH 8
+CCE H
Sbjct: 147 LCCEGH 152


>sp|RIBB_METTH|3,4-DIHYDROXY-2-BUTANONE 4-phosphate synthase|Methanothermobacter thermautotrophicus (strain

Query: 2 AVCCE 6
AVCCE
Sbjct: 184 AVCCE 188


>sp|PMDHL_METJA|PHOSPHOMEVALONATE dehydratase large subunit|Methanocaldococcus jannaschii (strain

Query: 3 VCCEDHI 9
VCC HI
Sbjct: 327 VCCSLHI 333


>sp|TRI_THEAC|TRICORN protease|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 VCCED 7
VCC+D
Sbjct: 56 VCCDD 60


>sp|KAE1B_METST|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 3 VCCEDH 8
V CEDH
Sbjct: 267 VMCEDH 272


>sp|END3_METJA|ENDONUCLEASE III|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 AVCCEDHIH 10
+C + H+H
Sbjct: 131 GICVDTHVH 139


>sp|UVRC_HALWD|UVRABC system protein C|Haloquadratum walsbyi (strain DSM 16790

Query: 2 AVCCEDHIH 10
A+ C +H H
Sbjct: 319 AILCSEHPH 327




64|Sequence|316|325|EDHIHCCPAG

>sp|RL2_DESA1|LARGE ribosomal subunit protein uL2|Desulfurococcus amylolyticus

Query: 2 DHIHCCPA 9
DHIH PA
Sbjct: 21 DHIHVAPA 28


>sp|SYT_THESM|THREONINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 473 LHCSPSG 479


>sp|SYT_THEON|THREONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 475 LHCSPSG 481


>sp|SYT_THEKO|THREONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 474 LHCSPSG 480


>sp|SYT_THEGJ|THREONINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 474 LHCSPSG 480


>sp|SYT_PYRHO|THREONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 473 LHCSPSG 479


>sp|SYT_PYRFU|THREONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 473 LHCSPSG 479


>sp|SYT_PYRAB|THREONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 473 LHCSPSG 479


>sp|SYT_METTP|THREONINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 468 LHCSPSG 474


>sp|SYT_METMA|THREONINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 481 LHCSPSG 487


>sp|SYT_METBU|THREONINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 482 LHCSPSG 488


>sp|SYT_METBF|THREONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 482 LHCSPSG 488


>sp|SYT_METAR|THREONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 484 LHCSPSG 490


>sp|SYT_METAC|THREONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 IHCCPAG 10
+HC P+G
Sbjct: 482 LHCSPSG 488


>sp|PSA_THEON|PROTEASOME subunit alpha|Thermococcus onnurineus (strain NA1)

Query: 1 EDHIHCCPAG 10
+DHI P+G
Sbjct: 73 DDHIAAAPSG 82


>sp|PSA_THEKO|PROTEASOME subunit alpha|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 EDHIHCCPAG 10
+DHI P+G
Sbjct: 73 DDHIAAAPSG 82


>sp|PSA_THEK1|PROTEASOME subunit alpha|Thermococcus sp. (strain JCM 11816

Query: 1 EDHIHCCPAG 10
+DHI P+G
Sbjct: 73 DDHIAAAPSG 82


>sp|PSA_THEGJ|PROTEASOME subunit alpha|Thermococcus gammatolerans (strain DSM 15229

Query: 1 EDHIHCCPAG 10
+DHI P+G
Sbjct: 73 DDHIAAAPSG 82


>sp|Y539_PYRAB|MEMO1 family protein PYRAB05390|Pyrococcus abyssi (strain GE5 /

Query: 2 DHIHCCPAG 10
DH C P G
Sbjct: 239 DHTMCGPGG 247


>sp|Y132_THEON|MEMO1 family protein TON_0132|Thermococcus onnurineus (strain NA1)

Query: 2 DHIHCCPAG 10
DH C P G
Sbjct: 239 DHTMCGPGG 247


>sp|QUEC_METM7|7-CYANO-7-DEAZAGUANINE synthase|Methanococcus maripaludis (strain C7 /

Query: 1 EDHIHC 6
ED++HC
Sbjct: 201 EDYLHC 206


>sp|QUEC_METM6|7-CYANO-7-DEAZAGUANINE synthase|Methanococcus maripaludis (strain C6 /

Query: 1 EDHIHC 6
ED++HC
Sbjct: 201 EDYLHC 206


>sp|QUEC_METM5|7-CYANO-7-DEAZAGUANINE synthase|Methanococcus maripaludis (strain C5 /

Query: 1 EDHIHC 6
ED++HC
Sbjct: 201 EDYLHC 206


>sp|SYT_METVS|THREONINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 466 LHCSPTG 472


>sp|SYT_METTH|THREONINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 457 LHCSPTG 463


>sp|SYT_METST|THREONINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 465 LHCSPTG 471


>sp|SYT_METS3|THREONINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 458 LHCSPTG 464


>sp|SYT_METPE|THREONINE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 457 LHCSPTG 463


>sp|SYT_METMP|THREONINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 466 LHCSPTG 472


>sp|SYT_METM7|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 466 LHCSPTG 472


>sp|SYT_METM6|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 466 LHCSPTG 472


>sp|SYT_METM5|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 466 LHCSPTG 472


>sp|SYT_METJA|THREONINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 464 LHCSPTG 470


>sp|SYT_META3|THREONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 474 LHCSPTG 480


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 459 LHCSPTG 465


>sp|SYT_METKA|THREONINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 466 LHCSPTG 472


>sp|SYT_METB6|THREONINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 462 LHCSPTG 468


>sp|SYT_METHJ|THREONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 IHCCPAG 10
+HC P G
Sbjct: 458 LHCSPTG 464


>sp|HDRB_METKA|COB--COM heterodisulfide reductase subunit B|Methanopyrus kandleri (strain

Query: 1 EDHIHCCPAG 10
+D I CC AG
Sbjct: 197 KDKIMCCGAG 206


>sp|NASA_HALMT|ASSIMILATORY nitrate reductase|Haloferax mediterranei (strain ATCC 33500

Query: 1 EDHIHCCPAG 10
+DH+ P G
Sbjct: 220 DDHVSVAPGG 229




65|Sequence|321|330|CCPAGFTCDT

>sp|DNLJ_HALWD|DNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 CPAGFTCD 9
C G TCD
Sbjct: 495 CTGGLTCD 502


>sp|SUDHA_PYRFU|SULFIDE dehydrogenase subunit alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 3 PAGFTC 8
PAG TC
Sbjct: 164 PAGLTC 169


>sp|Y661_METJA|UNCHARACTERIZED protein MJ0661|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CCPAGFTCD 9
C GF CD
Sbjct: 28 CIKCGFCCD 36


>sp|LIPA_AERPE|LIPOYL synthase|Aeropyrum pernix (strain ATCC 700893

Query: 2 CPAGFTC 8
CP FTC
Sbjct: 37 CPNIFTC 43




66|Sequence|326|335|FTCDTQKGTC

>sp|GLMM_METAC|PROBABLE phosphoglucosamine mutase|Methanosarcina acetivorans (strain ATCC

Query: 1 FTCDTQKGT 9
F C +KGT
Sbjct: 257 FECGDEKGT 265


>sp|QUEC_METST|7-CYANO-7-DEAZAGUANINE synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 CDTQKGTC 10
CDT G C
Sbjct: 196 CDTHCGVC 203




67|Sequence|331|340|QKGTCEQGPH

>sp|HIS1_METMA|ATP phosphoribosyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 GTCEQGPH 10
G CE PH
Sbjct: 141 GACEMTPH 148


>sp|HIS1_METBU|ATP phosphoribosyltransferase|Methanococcoides burtonii (strain DSM

Query: 3 GTCEQGPH 10
G CE PH
Sbjct: 140 GACEMTPH 147


>sp|HIS1_METBF|ATP phosphoribosyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 3 GTCEQGPH 10
G CE PH
Sbjct: 141 GACEMTPH 148


>sp|HIS1_METAC|ATP phosphoribosyltransferase|Methanosarcina acetivorans (strain ATCC

Query: 3 GTCEQGPH 10
G CE PH
Sbjct: 141 GACEMTPH 148


>sp|PYRC_HALSA|DIHYDROOROTASE salinarum (strain ATCC 700922

Query: 4 TCEQGPH 10
TCE PH
Sbjct: 239 TCEATPH 245


>sp|PYRC_METAC|DIHYDROOROTASE acetivorans (strain ATCC 35395

Query: 4 TCEQGPH 10
TCE PH
Sbjct: 261 TCEVTPH 267


>sp|ARADH_HALVD|L-ARABINOSE 1-dehydrogenase (NAD(P)(+))|Haloferax volcanii (strain ATCC 29605

Query: 3 GTCEQG 8
G CEQG
Sbjct: 200 GDCEQG 205


>sp|PYRC_METTH|DIHYDROOROTASE thermautotrophicus (strain ATCC 29096

Query: 4 TCEQGPH 10
TCE PH
Sbjct: 241 TCEVTPH 247


>sp|PYRC_METMA|DIHYDROOROTASE mazei (strain ATCC BAA-159

Query: 4 TCEQGPH 10
TCE PH
Sbjct: 261 TCEVTPH 267




68|Sequence|336|345|EQGPHQVPWM

>sp|TRPB_METKA|TRYPTOPHAN synthase beta chain|Methanopyrus kandleri (strain AV19 /

Query: 3 GPHQVPWM 10
GPH PW+
Sbjct: 195 GPHPYPWI 202


>sp|RPO5_METS5|DNA-DIRECTED RNA polymerase subunit Rpo5|Metallosphaera sedula (strain ATCC

Query: 3 GPHQVPWM 10
GP Q+PWM
Sbjct: 37 GPEQLPWM 44


>sp|SAHH_SULTO|ADENOSYLHOMOCYSTEINASE tokodaii (strain DSM 16993

Query: 1 EQGPHQVPW 9
EQG Q+ W
Sbjct: 12 EQGKKQIEW 20


>sp|DADD_METTH|5'-DEOXYADENOSINE deaminase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 PHQVPW 9
PH PW
Sbjct: 369 PHLTPW 374


>sp|CAR_HALS3|TRANSDUCER protein Car|Halobacterium salinarum (strain ATCC 29341

Query: 1 EQGPHQVP 8
E+ PH VP
Sbjct: 120 EEEPHDVP 127


>sp|SAHH_SULAC|ADENOSYLHOMOCYSTEINASE acidocaldarius (strain ATCC 33909

Query: 1 EQGPHQVPW 9
EQG Q+ W
Sbjct: 12 EQGRKQIEW 20


>sp|LHRC_SULAC|ATP-DEPENDENT helicase Lhr-Core|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 GPHQVP 8
GP+QVP
Sbjct: 818 GPNQVP 823


>sp|RL22_CALMQ|LARGE ribosomal subunit protein uL22|Caldivirga maquilingensis (strain

Query: 1 EQGPHQVPW 9
+Q H VPW
Sbjct: 80 KQAHHNVPW 88


>sp|MTAP_PYRHO|S-METHYL-5'-THIOADENOSINE phosphorylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 PHQVPW 9
PHQVP+
Sbjct: 59 PHQVPY 64


>sp|OTC_METTH|ORNITHINE carbamoyltransferase|Methanothermobacter thermautotrophicus (strain

Query: 2 QGPHQVPW 9
GPH V W
Sbjct: 273 DGPHSVVW 280


>sp|RPO5_SACSH|DNA-DIRECTED RNA polymerase subunit Rpo5|Saccharolobus shibatae (strain ATCC

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 39 PEQLPWI 45


>sp|RPO5_SACI7|DNA-DIRECTED RNA polymerase subunit Rpo5|Saccharolobus islandicus (strain

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 39 PEQLPWI 45


>sp|RPO5_SACI6|DNA-DIRECTED RNA polymerase subunit Rpo5|Saccharolobus islandicus (strain

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 39 PEQLPWI 45


>sp|RPO5_SACI4|DNA-DIRECTED RNA polymerase subunit Rpo5|Saccharolobus islandicus (strain

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 39 PEQLPWI 45


>sp|RPO5_SACI3|DNA-DIRECTED RNA polymerase subunit Rpo5|Saccharolobus islandicus (strain

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 39 PEQLPWI 45


>sp|RPO5_SACI2|DNA-DIRECTED RNA polymerase subunit Rpo5|Saccharolobus islandicus (strain

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 39 PEQLPWI 45


>sp|RPO5_SACI1|DNA-DIRECTED RNA polymerase subunit Rpo5|Saccharolobus islandicus (strain

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 39 PEQLPWI 45


>sp|RPO5_SACS2|DNA-DIRECTED RNA polymerase subunit Rpo5|Saccharolobus solfataricus (strain

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 39 PEQLPWI 45


>sp|TRPB_METJA|TRYPTOPHAN synthase beta chain|Methanocaldococcus jannaschii (strain ATCC

Query: 3 GPHQVPWM 10
GPH P M
Sbjct: 204 GPHPYPMM 211


>sp|Y1127_METTP|PUTATIVE nickel insertion protein|Methanothrix thermoacetophila (strain DSM

Query: 5 HQVPW 9
H++PW
Sbjct: 172 HRIPW 176


>sp|RASEA_METAC|ARCHAEOSINE synthase subunit beta|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 EQGPHQVPWM 10
E+G ++ PW+
Sbjct: 251 EKGQYRPPWL 260


>sp|RPO5_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo5|Sulfolobus acidocaldarius (strain

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 39 PEQLPWI 45


>sp|RPO5_SULTO|DNA-DIRECTED RNA polymerase subunit Rpo5|Sulfurisphaera tokodaii (strain DSM

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 39 PEQLPWI 45


>sp|SYL_IGNH4|LEUCINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 EQGPHQVPW 9
E+G H V W
Sbjct: 228 EKGTHPVAW 236


>sp|RL22_PYRIL|LARGE ribosomal subunit protein uL22|Pyrobaculum islandicum (strain DSM

Query: 1 EQGPHQVPW 9
+Q H VPW
Sbjct: 83 KQAHHAVPW 91


>sp|SYW_PYRAE|TRYPTOPHAN--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 5 HQVPWM 10
H VPW+
Sbjct: 89 HMVPWI 94


>sp|SYW_PYRAR|TRYPTOPHAN--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 5 HQVPWM 10
H VPW+
Sbjct: 89 HMVPWI 94


>sp|RPO5_HYPBU|DNA-DIRECTED RNA polymerase subunit Rpo5|Hyperthermus butylicus (strain DSM

Query: 4 PHQVPWM 10
P Q+PW+
Sbjct: 38 PEQLPWL 44


>sp|HTPX_METJA|PROTEASE HtpX homolog|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 HQVPWM 10
H++PW+
Sbjct: 63 HEMPWL 68




69|Sequence|341|350|QVPWMEKAPA

>sp|RFCS_METKA|REPLICATION factor C small subunit|Methanopyrus kandleri (strain AV19 /

Query: 1 QVPWMEK 7
++PW+EK
Sbjct: 10 EIPWVEK 16


>sp|KAE1B_METTH|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 VPWMEKAPA 10
VPWM ++ A
Sbjct: 323 VPWMRESEA 331


>sp|RFCS_METMP|REPLICATION factor C small subunit|Methanococcus maripaludis (strain DSM

Query: 1 QVPWMEK 7
Q PW+EK
Sbjct: 2 QKPWVEK 8


>sp|RFCS_METM7|REPLICATION factor C small subunit|Methanococcus maripaludis (strain C7 /

Query: 1 QVPWMEK 7
Q PW+EK
Sbjct: 2 QKPWVEK 8


>sp|RFCS_METM6|REPLICATION factor C small subunit|Methanococcus maripaludis (strain C6 /

Query: 1 QVPWMEK 7
Q PW+EK
Sbjct: 2 QKPWVEK 8


>sp|RFCS_METVS|REPLICATION factor C small subunit|Methanococcus vannielii (strain ATCC

Query: 1 QVPWMEK 7
Q PW+EK
Sbjct: 2 QKPWVEK 8


>sp|RFCL_PYRAB|REPLICATION factor C large subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 QVPWMEK 7
+VPW+EK
Sbjct: 3 EVPWVEK 9


>sp|RFCS_METM5|REPLICATION factor C small subunit|Methanococcus maripaludis (strain C5 /

Query: 1 QVPWMEK 7
Q PW+EK
Sbjct: 2 QKPWVEK 8


>sp|RFCL_THEKO|REPLICATION factor C large subunit|Thermococcus kodakarensis (strain ATCC

Query: 1 QVPWMEK 7
+VPW+EK
Sbjct: 3 EVPWVEK 9


>sp|RFCS_METST|REPLICATION factor C small subunit|Methanosphaera stadtmanae (strain ATCC

Query: 1 QVPWMEK 7
+ PW+EK
Sbjct: 2 KTPWVEK 8


>sp|RFCL_PYRHO|REPLICATION factor C large subunit|Pyrococcus horikoshii (strain ATCC

Query: 1 QVPWMEK 7
VPW+EK
Sbjct: 3 DVPWIEK 9


>sp|RFCL_METKA|REPLICATION factor C large subunit|Methanopyrus kandleri (strain AV19 /

Query: 2 VPWMEK 7
VPW+EK
Sbjct: 2 VPWVEK 7


>sp|RFCL_PYRIL|REPLICATION factor C large subunit|Pyrobaculum islandicum (strain DSM 4184

Query: 2 VPWMEK 7
+PW+EK
Sbjct: 3 IPWVEK 8


>sp|CS3HD_THETK|CRISPR-ASSOCIATED endonuclease Cas3-HD|Thermoproteus tenax (strain ATCC 35583

Query: 4 WMEKA 8
WMEKA
Sbjct: 37 WMEKA 41


>sp|RTCA_THEKO|RNA 3'-terminal phosphate cyclase|Thermococcus kodakarensis (strain

Query: 3 PWMEKAP 9
PW EK P
Sbjct: 170 PWEEKKP 176


>sp|RFCL_PYRCJ|REPLICATION factor C large subunit|Pyrobaculum calidifontis (strain DSM

Query: 2 VPWMEK 7
+PW+EK
Sbjct: 3 IPWVEK 8


>sp|RFCL_PYRNV|REPLICATION factor C large subunit|Pyrobaculum neutrophilum (strain DSM

Query: 2 VPWMEK 7
+PW+EK
Sbjct: 3 IPWVEK 8




70|Sequence|346|355|EKAPAHLSLP

>sp|Y916_METST|UPF0425 pyridoxal phosphate-dependent protein Msp_0916|Methanosphaera

Query: 2 KAPAHLSLP 10
K PAH S+P
Sbjct: 106 KKPAHPSIP 114


>sp|RRP41_PYRIL|EXOSOME complex component Rrp41|Pyrobaculum islandicum (strain DSM 4184

Query: 1 EKAPAHLSLP 10
E P HLSLP
Sbjct: 58 EMHPRHLSLP 67


>sp|RRP41_PYRNV|EXOSOME complex component Rrp41|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 EKAPAHLSLP 10
E P HLSLP
Sbjct: 58 EMHPRHLSLP 67


>sp|RRP41_PYRAE|EXOSOME complex component Rrp41|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 EKAPAHLSLP 10
E P HLSLP
Sbjct: 58 EMHPRHLSLP 67


>sp|RRP41_SACS2|EXOSOME complex component Rrp41|Saccharolobus solfataricus (strain ATCC

Query: 1 EKAPAHLSLP 10
E P HLSLP
Sbjct: 63 EMHPRHLSLP 72


>sp|RRP41_PYRCJ|EXOSOME complex component Rrp41|Pyrobaculum calidifontis (strain DSM

Query: 1 EKAPAHLSLP 10
E P HLSLP
Sbjct: 58 EMHPRHLSLP 67


>sp|RRP41_PYRAR|EXOSOME complex component Rrp41|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 EKAPAHLSLP 10
E P HLSLP
Sbjct: 58 EMHPRHLSLP 67


>sp|HISX_SULTO|HISTIDINOL dehydrogenase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 EKAPAHLSL 9
E AP HLSL
Sbjct: 290 EIAPEHLSL 298


>sp|SYT_METBU|THREONINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 EKAPAHLSL 9
EKAP H+ L
Sbjct: 211 EKAPPHVEL 219


>sp|Y4020_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 1 EKAPAHLS 8
E+AP HLS
Sbjct: 175 ERAPHHLS 182


>sp|Y887_METMA|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina mazei (strain

Query: 1 EKAPAHLS 8
E+AP HLS
Sbjct: 176 ERAPHHLS 183


>sp|ECFA_METST|ENERGY-COUPLING factor transporter ATP-binding protein|Methanosphaera stadtmanae

Query: 1 EKAPAHLS 8
EK P HLS
Sbjct: 135 EKPPHHLS 142


>sp|PIMT_METBU|PROTEIN-L-ISOASPARTATE O-methyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 1 EKAPAHLSLP 10
+K P HL LP
Sbjct: 19 KKVPRHLFLP 28


>sp|HISX_SACS2|HISTIDINOL dehydrogenase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 APAHLSL 9
AP HLSL
Sbjct: 296 APEHLSL 302


>sp|HISX_SULAC|HISTIDINOL dehydrogenase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 APAHLSL 9
AP HLSL
Sbjct: 291 APEHLSL 297




71|Sequence|351|360|HLSLPDPQAL

>sp|THIC_METHJ|PHOSPHOMETHYLPYRIMIDINE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 HLSLPDPQ 8
HL+LP+P+
Sbjct: 332 HLALPNPE 339


>sp|THIC_IGNH4|PHOSPHOMETHYLPYRIMIDINE synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 HLSLPDPQ 8
HL+LP+P+
Sbjct: 335 HLNLPNPE 342


>sp|THIC_METPE|PHOSPHOMETHYLPYRIMIDINE synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 HLSLPDPQ 8
HL+LP P+
Sbjct: 332 HLALPTPE 339


>sp|THIC_METMJ|PHOSPHOMETHYLPYRIMIDINE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 HLSLPDPQ 8
HL+LP P+
Sbjct: 332 HLALPTPE 339


>sp|THIC_METLZ|PHOSPHOMETHYLPYRIMIDINE synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 HLSLPDPQ 8
HL+LP P+
Sbjct: 332 HLALPTPE 339


>sp|THIC_METB6|PHOSPHOMETHYLPYRIMIDINE synthase|Methanoregula boonei (strain DSM 21154

Query: 1 HLSLPDPQ 8
HL+LP P+
Sbjct: 332 HLALPTPE 339


>sp|THIC2_METST|PHOSPHOMETHYLPYRIMIDINE synthase 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 HLSLPDPQ 8
HL+LP P+
Sbjct: 332 HLALPGPE 339


>sp|SYE_SULTO|GLUTAMATE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 LSLPDP 7
LSLPDP
Sbjct: 247 LSLPDP 252


>sp|PUR5_METTH|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 SLPDPQAL 10
SLP+PQ +
Sbjct: 262 SLPEPQQI 269


>sp|RRP41_SACS2|EXOSOME complex component Rrp41|Saccharolobus solfataricus (strain ATCC

Query: 1 HLSLPDPQAL 10
HLSLPD L
Sbjct: 68 HLSLPDRAVL 77


>sp|RRP41_PYRIL|EXOSOME complex component Rrp41|Pyrobaculum islandicum (strain DSM 4184

Query: 1 HLSLPD 6
HLSLPD
Sbjct: 63 HLSLPD 68


>sp|PRIS_SULTO|DNA primase small subunit PriS|Sulfurisphaera tokodaii (strain DSM

Query: 1 HLSLPDPQAL 10
HLS PQ L
Sbjct: 46 HLSFSSPQEL 55


>sp|RRP41_PYRNV|EXOSOME complex component Rrp41|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 HLSLPD 6
HLSLPD
Sbjct: 63 HLSLPD 68


>sp|RRP41_PYRCJ|EXOSOME complex component Rrp41|Pyrobaculum calidifontis (strain DSM

Query: 1 HLSLPD 6
HLSLPD
Sbjct: 63 HLSLPD 68


>sp|RRP41_PYRAR|EXOSOME complex component Rrp41|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 HLSLPD 6
HLSLPD
Sbjct: 63 HLSLPD 68


>sp|TNAA_AERPE|PROBABLE tryptophanase|Aeropyrum pernix (strain ATCC 700893

Query: 2 LSLPDPQA 9
L LP PQA
Sbjct: 146 LDLPSPQA 153


>sp|RRP41_PYRAE|EXOSOME complex component Rrp41|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 HLSLPD 6
HLSLPD
Sbjct: 63 HLSLPD 68


>sp|RRP41_SULAC|EXOSOME complex component Rrp41|Sulfolobus acidocaldarius (strain ATCC

Query: 1 HLSLPDPQAL 10
HL+LPD +L
Sbjct: 65 HLALPDKASL 74


>sp|SYR_HALWD|ARGININE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 SLPDPQ 8
SLPDP+
Sbjct: 185 SLPDPE 190


>sp|THIC_METKA|PHOSPHOMETHYLPYRIMIDINE synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 HLSLPD 6
HL+LPD
Sbjct: 333 HLALPD 338


>sp|CHEB2_METHJ|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase 2|Methanospirillum

Query: 1 HLSLPDPQA 9
HL +P P+A
Sbjct: 141 HLKVPKPEA 149




72|Sequence|356|365|DPQALKRDVP

>sp|NADB_HALSA|L-ASPARTATE oxidase|Halobacterium salinarum (strain ATCC 700922

Query: 1 DPQALKRDV 9
DP++LKRD+
Sbjct: 59 DPESLKRDI 67


>sp|GLYA_PYRNV|SERINE hydroxymethyltransferase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 DPQALKRDV 9
DP A++RDV
Sbjct: 390 DPAAVRRDV 398


>sp|GLYA_PYRAE|SERINE hydroxymethyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 DPQALKRDV 9
DP A+KR+V
Sbjct: 390 DPTAVKREV 398


>sp|GLYA_PYRCJ|SERINE hydroxymethyltransferase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 DPQALKRDV 9
DP +++RDV
Sbjct: 390 DPASVRRDV 398


>sp|FPRA_METTM|COENZYME F420H(2) oxidase|Methanothermobacter marburgensis (strain ATCC

Query: 2 PQALKRDVP 10
PQ L R++P
Sbjct: 179 PQRLDREIP 187


>sp|GLYA_THEGJ|SERINE hydroxymethyltransferase|Thermococcus gammatolerans (strain DSM

Query: 1 DPQALKRDV 9
DP+ ++RDV
Sbjct: 397 DPKKVRRDV 405


>sp|TRM1_THEON|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermococcus onnurineus

Query: 2 PQALKRDVP 10
P ALK D P
Sbjct: 357 PTALKTDAP 365


>sp|GLYA_PYRAR|SERINE hydroxymethyltransferase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 DPQALKRDV 9
DP ++RDV
Sbjct: 389 DPAGVRRDV 397


>sp|EF2_KORCO|ELONGATION factor 2|Korarchaeum cryptofilum (strain OPF8)

Query: 1 DPQ--ALKRDVP 10
DP+ AL+RD+P
Sbjct: 233 DPEGLALRRDIP 244


>sp|TPIS_METLZ|TRIOSEPHOSPHATE isomerase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 DPQALKRDV 9
DP+A+ RD+
Sbjct: 209 DPEAVLRDL 217


>sp|GCSPA_THEAC|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermoplasma

Query: 1 DPQALKRDVP 10
DP+ L D+P
Sbjct: 15 DPEELFSDIP 24


>sp|CETZ_PYRFU|TUBULIN-LIKE protein CetZ|Pyrococcus furiosus (strain ATCC 43587

Query: 3 QALKRDVP 10
+A+KRD+P
Sbjct: 69 EAMKRDLP 76


>sp|CETZ_THEKO|TUBULIN-LIKE protein CetZ|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 QALKRDVP 10
+A+KRD+P
Sbjct: 69 EAMKRDLP 76


>sp|CETZ_PYRHO|TUBULIN-LIKE protein CetZ|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 QALKRDVP 10
+A+KRD+P
Sbjct: 69 EAMKRDLP 76


>sp|Y1214_METKA|UPF0210 protein MK1214|Methanopyrus kandleri (strain AV19 /

Query: 1 DPQALKRDV 9
DP+ L RDV
Sbjct: 39 DPEELARDV 47


>sp|CETZ_PYRAB|TUBULIN-LIKE protein CetZ|Pyrococcus abyssi (strain GE5 /

Query: 3 QALKRDVP 10
+A+KRD+P
Sbjct: 69 EAMKRDLP 76


>sp|SEPS_METBF|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 DPQALKRD 8
DP+ +KRD
Sbjct: 4 DPEKIKRD 11


>sp|PRIS_PYRCJ|DNA primase small subunit PriS|Pyrobaculum calidifontis (strain DSM

Query: 1 DPQALKRDV 9
DP+ALK +V
Sbjct: 206 DPEALKVEV 214


>sp|RFCS2_PYRAR|REPLICATION factor C small subunit|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 QALKRDVP 10
+ALK DVP
Sbjct: 270 EALKLDVP 277


>sp|PSB1_CENSY|PROTEASOME subunit beta 1|Cenarchaeum symbiosum (strain A)

Query: 5 LKRDVP 10
LKRD+P
Sbjct: 73 LKRDIP 78


>sp|Y1542_METKA|UPF0173 metal-dependent hydrolase MK1542|Methanopyrus kandleri (strain AV19

Query: 1 DPQALKRDV 9
DP+ KR+V
Sbjct: 202 DPEEFKREV 210


>sp|TPIS_METMJ|TRIOSEPHOSPHATE isomerase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 DPQALKRDV 9
DP+A+ RD+
Sbjct: 210 DPEAVLRDL 218


>sp|PSB1_NITMS|PROTEASOME subunit beta 1|Nitrosopumilus maritimus (strain SCM1)

Query: 5 LKRDVP 10
LKRDVP
Sbjct: 77 LKRDVP 82


>sp|Y3946_HALS3|PUTATIVE HTH-type transcriptional regulatory protein|Halobacterium salinarum

Query: 1 DPQALKRDVP 10
DP+A DVP
Sbjct: 204 DPEAAPEDVP 213


>sp|Y2112_HALSA|PUTATIVE HTH-type transcriptional regulatory protein|Halobacterium salinarum

Query: 1 DPQALKRDVP 10
DP+A DVP
Sbjct: 204 DPEAAPEDVP 213




73|Sequence|361|370|KRDVPCDNVS

>sp|PGP_METTH|PHOSPHOGLYCOLATE phosphatase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 RDVPCDNV 9
RDVP D V
Sbjct: 114 RDVPADTV 121


>sp|RIFK_METHJ|RIBOFLAVIN kinase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 RDVPC 6
RDVPC
Sbjct: 176 RDVPC 180


>sp|KTHY_METJA|PROBABLE thymidylate kinase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 KRDVPCD 7
KRDV CD
Sbjct: 81 KRDVVCD 87


>sp|HEM3_ARCFU|PROBABLE porphobilinogen deaminase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KRDVPCD 7
+RD PCD
Sbjct: 94 ERDSPCD 100


>sp|PURL_THEVO|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermoplasma volcanium (strain ATCC 51530

Query: 5 PCDNVS 10
PCDN+S
Sbjct: 606 PCDNLS 611


>sp|LHRC_SACS2|ATP-DEPENDENT helicase Lhr-Core|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 KRDVPCD 7
KRDVP D
Sbjct: 702 KRDVPFD 708


>sp|KPRS_METKA|RIBOSE-PHOSPHATE pyrophosphokinase|Methanopyrus kandleri (strain AV19 /

Query: 3 DVPCDNVS 10
DVP +NVS
Sbjct: 134 DVPAENVS 141


>sp|HIS8_METVS|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus vannielii (strain ATCC 35089

Query: 4 VPCDNV 9
VPC+N+
Sbjct: 85 VPCENI 90


>sp|GATE_THEKO|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Thermococcus kodakarensis (strain ATCC

Query: 1 KRDVPCDNVS 10
K++VP +N++
Sbjct: 511 KKEVPVENIT 520


>sp|MTD_METAC|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanosarcina

Query: 2 RDVPCDNVS 10
+DVPC VS
Sbjct: 84 KDVPCIVVS 92


>sp|PURL_THEAC|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 PCDNVS 10
PCDN++
Sbjct: 606 PCDNLT 611


>sp|MTD_METMA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanosarcina

Query: 2 RDVPCDNVS 10
+DVPC VS
Sbjct: 84 KDVPCIIVS 92


>sp|GATE_PYRHO|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Pyrococcus horikoshii (strain ATCC

Query: 1 KRDVPCDNVS 10
+++VP +N+S
Sbjct: 514 RKEVPIENIS 523


>sp|GATE_THEGJ|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Thermococcus gammatolerans (strain DSM

Query: 1 KRDVPCDNVS 10
K++VP +N++
Sbjct: 511 KKEVPIENIT 520


>sp|AMPPA_METAR|AMP phosphorylase|Methanocella arvoryzae (strain DSM 22066

Query: 3 DVPCDN 8
D+PC N
Sbjct: 280 DIPCGN 285


>sp|Y164_METJA|UNCHARACTERIZED protein MJ0164|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KRDVPCDNV 9
K D+P DN+
Sbjct: 137 KLDIPLDNL 145




74|Sequence|366|375|CDNVSSCPSS

>sp|MUTL_METTP|DNA mismatch repair protein MutL|Methanothrix thermoacetophila (strain

Query: 1 CDNVSSCP 8
CDN +CP
Sbjct: 529 CDNPRTCP 536


>sp|Y551_METJA|UNCHARACTERIZED protein MJ0551|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 NVSSCPSS 10
NVS CP+S
Sbjct: 132 NVSGCPNS 139


>sp|GSA_HALLT|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 CDNVSSCPSS 10
CD +CP +
Sbjct: 379 CDRYDTCPKN 388


>sp|MUTL_HALSA|DNA mismatch repair protein MutL|Halobacterium salinarum (strain ATCC

Query: 1 CDNVSSCP 8
C+N +CP
Sbjct: 617 CENPYACP 624


>sp|MUTL_HALS3|DNA mismatch repair protein MutL|Halobacterium salinarum (strain ATCC

Query: 1 CDNVSSCP 8
C+N +CP
Sbjct: 617 CENPYACP 624




75|Sequence|371|380|SCPSSDTCCQ

>sp|APBC_METJA|IRON-SULFUR cluster carrier protein|Methanocaldococcus jannaschii (strain

Query: 1 SCPSSDTC 8
+CPS +TC
Sbjct: 10 TCPSKNTC 17


>sp|CHED1_METMA|PROBABLE chemoreceptor glutamine deamidase CheD|Methanosarcina mazei

Query: 1 SCPSSDTC 8
+CP D+C
Sbjct: 34 TCPFQDSC 41


>sp|HISX_PYRFU|HISTIDINOL dehydrogenase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 CPSSDTCCQ 10
C S + CC+
Sbjct: 258 CSSLEECCK 266




76|Sequence|376|385|DTCCQLTSGE

>sp|Y273_METKA|UPF0235 protein MK0273|Methanopyrus kandleri (strain AV19 /

Query: 1 DTCCQLTSGE 10
+T C+L SGE
Sbjct: 63 NTTCELVSGE 72


>sp|DHQS_METBU|3-DEHYDROQUINATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 DTCCQLTSGE 10
DTC +T GE
Sbjct: 223 DTCNMMTKGE 232


>sp|AATA_METMA|A-TYPE ATP synthase subunit A|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 DTCCQLTSG 9
DT C LT G
Sbjct: 170 DTICTLTDG 178


>sp|AATA_METBF|A-TYPE ATP synthase subunit A|Methanosarcina barkeri (strain Fusaro /

Query: 1 DTCCQLTSG 9
DT C LT G
Sbjct: 170 DTICTLTDG 178


>sp|AATA_METBA|A-TYPE ATP synthase subunit A|Methanosarcina barkeri

Query: 1 DTCCQLTSG 9
DT C LT G
Sbjct: 170 DTICTLTDG 178


>sp|DHQS_METKA|3-DEHYDROQUINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 DTCCQLTSGE 10
DTC ++ GE
Sbjct: 242 DTCSLMSEGE 251


>sp|DHQS_METMJ|3-DEHYDROQUINATE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 DTCCQLTSGE 10
DTC L GE
Sbjct: 171 DTCSILADGE 180


>sp|DHQS_METPE|3-DEHYDROQUINATE synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 DTCCQLTSGE 10
DTC L GE
Sbjct: 171 DTCSILADGE 180


>sp|Y206_METKA|UPF0280 protein MK0206|Methanopyrus kandleri (strain AV19 /

Query: 4 CQLTSGE 10
C LTSG+
Sbjct: 177 CNLTSGD 183


>sp|DHQS_METHJ|3-DEHYDROQUINATE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 DTCCQLTSGE 10
DTC + GE
Sbjct: 171 DTCSLMVDGE 180




77|Sequence|381|390|LTSGEWGCCP

>sp|SYG_AERPE|GLYCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 5 EWGCCP 10
+WG CP
Sbjct: 227 QWGSCP 232


>sp|TREH_THEVO|TREHALASE volcanium (strain ATCC 51530

Query: 5 EWGCCP 10
+WGC P
Sbjct: 52 DWGCLP 57


>sp|TREH_THEAC|TREHALASE acidophilum (strain ATCC 25905

Query: 5 EWGCCP 10
+WGC P
Sbjct: 10 DWGCLP 15


>sp|RS5_METS3|SMALL ribosomal subunit protein uS5|Methanobrevibacter smithii (strain

Query: 4 GEWGC 8
G+WGC
Sbjct: 117 GDWGC 121


>sp|RS5_METTH|SMALL ribosomal subunit protein uS5|Methanothermobacter

Query: 4 GEWGC 8
G+WGC
Sbjct: 119 GDWGC 123


>sp|HIS8_METVS|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus vannielii (strain ATCC 35089

Query: 6 WGCCP 10
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METMP|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain DSM 14266

Query: 6 WGCCP 10
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METM7|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C7 /

Query: 6 WGCCP 10
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METM6|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C6 /

Query: 6 WGCCP 10
WGC P
Sbjct: 47 WGCSP 51


>sp|HIS8_METM5|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C5 /

Query: 6 WGCCP 10
WGC P
Sbjct: 47 WGCSP 51


>sp|PRIL_METKA|DNA primase large subunit PriL|Methanopyrus kandleri (strain AV19 /

Query: 6 WGCCP 10
WG CP
Sbjct: 381 WGLCP 385


>sp|MER_ARCFU|5,10-METHYLENETETRAHYDROMETHANOPTERIN reductase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LTSGEWG 7
T G+WG
Sbjct: 262 FTKGDWG 268


>sp|ARSM_HALSA|ARSENITE methyltransferase|Halobacterium salinarum (strain ATCC 700922

Query: 3 SGEWGCC 9
SG+ GCC
Sbjct: 154 SGDGGCC 160


>sp|SPEH_METJA|S-ADENOSYLMETHIONINE decarboxylase proenzyme|Methanocaldococcus jannaschii (strain

Query: 6 WGCCP 10
WGC P
Sbjct: 14 WGCDP 18




78|Sequence|386|395|WGCCPIPEAV

>sp|FOLCP_HALSA|PROBABLE bifunctional folylpolyglutamate synthase/dihydropteroate

Query: 1 WGCCPIPE 8
W C P+P+
Sbjct: 356 WACEPVPD 363


>sp|FRHA_METTH|COENZYME F420 hydrogenase subunit alpha|Methanothermobacter

Query: 2 GCCPIPEAV 10
G CPIP +
Sbjct: 64 GVCPIPHTL 72


>sp|SYG_AERPE|GLYCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 WGCCP 5
WG CP
Sbjct: 228 WGSCP 232


>sp|TRPB_DESA1|TRYPTOPHAN synthase beta chain|Desulfurococcus amylolyticus (strain DSM

Query: 5 PIPEAV 10
PIPEAV
Sbjct: 63 PIPEAV 68


>sp|MFNA_METJA|L-TYROSINE/L-ASPARTATE decarboxylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GCCPIPEA 9
G CPIP
Sbjct: 247 GHCPIPSG 254


>sp|RL10_AERPE|LARGE ribosomal subunit protein uL10|Aeropyrum pernix (strain ATCC 700893

Query: 5 PIPEAV 10
P+PEAV
Sbjct: 241 PVPEAV 246


>sp|SYK_METMJ|LYSINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 4 CPIPE 8
CP+PE
Sbjct: 140 CPLPE 144


>sp|RNP2_METKA|RIBONUCLEASE P protein component 2|Methanopyrus kandleri (strain AV19 /

Query: 4 CPIPE 8
CP+PE
Sbjct: 153 CPLPE 157


>sp|HDRB_METTM|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 3 CCPIP 7
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB_METTH|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 3 CCPIP 7
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB2_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B2|Methanococcus

Query: 3 CCPIP 7
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB1_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 3 CCPIP 7
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B1|Methanococcus

Query: 3 CCPIP 7
CCP P
Sbjct: 46 CCPAP 50


>sp|PRIL_METKA|DNA primase large subunit PriL|Methanopyrus kandleri (strain AV19 /

Query: 1 WGCCP 5
WG CP
Sbjct: 381 WGLCP 385


>sp|TRUA_PYRAR|TRNA pseudouridine synthase A|Pyrobaculum arsenaticum (strain DSM

Query: 1 WGCCPIPEA 9
WG +PE
Sbjct: 75 WGVAEVPEG 83


>sp|TRUA_PYRAE|TRNA pseudouridine synthase A|Pyrobaculum aerophilum (strain ATCC

Query: 1 WGCCPIPEA 9
WG +PE
Sbjct: 75 WGIAEVPEG 83


>sp|MBHJ_PYRFU|PROBABLE membrane-bound hydrogenase subunit mbhJ|Pyrococcus furiosus (strain

Query: 2 GCCPIPEAV 10
GC P PEA+
Sbjct: 131 GCPPRPEAI 139


>sp|TRUA_PYRFU|TRNA pseudouridine synthase A|Pyrococcus furiosus (strain ATCC 43587

Query: 1 WGCCPIPE 8
WG +PE
Sbjct: 86 WGIAEVPE 93


>sp|HDRB2_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 3 CCPIP 7
CCP P
Sbjct: 41 CCPAP 45


>sp|HDRB_METKA|COB--COM heterodisulfide reductase subunit B|Methanopyrus kandleri (strain

Query: 3 CCPIP 7
CCP P
Sbjct: 43 CCPAP 47


>sp|HDRB2_METAC|FERREDOXIN/F(420)H(2)-DEPENDENT CoB-CoM heterodisulfide reductase subunit|Methanosarcina

Query: 3 CCPIP 7
CCP P
Sbjct: 42 CCPAP 46


>sp|Y138_META3|PROTEIN Maeo_0138|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 GCCPIPEAV 10
GC IPE V
Sbjct: 58 GCIGIPEPV 66


>sp|FPOB_METMA|F(420)H(2) dehydrogenase subunit B|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GCCPIPEAV 10
GC P PEA+
Sbjct: 155 GCPPRPEAL 163


>sp|NADA_METKA|QUINOLINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 WGCCPI 6
GCCP+
Sbjct: 155 HGCCPV 160


>sp|HDRB_METMA|FERREDOXIN:COB-COM heterodisulfide reductase subunit B|Methanosarcina mazei (strain

Query: 3 CCPIP 7
CCP P
Sbjct: 42 CCPAP 46




79|Sequence|391|400|IPEAVCCSDH

>sp|UVRC_HALWD|UVRABC system protein C|Haloquadratum walsbyi (strain DSM 16790

Query: 1 IPEAVCCSDH 10
+P+A+ CS+H
Sbjct: 316 LPDAILCSEH 325


>sp|DTDA_META3|D-AMINOACYL-TRNA deacylase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 EAVCCSD 9
E VCC D
Sbjct: 91 EEVCCCD 97


>sp|MTRD_METKA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit D|Methanopyrus kandleri (strain AV19 /

Query: 1 IPEAVCCS 8
+P+AV CS
Sbjct: 200 LPKAVVCS 207


>sp|AROA_PICTO|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Picrophilus torridus (strain ATCC 700027

Query: 1 IPEAVCCSDH 10
+PE + SDH
Sbjct: 357 LPERISFSDH 366


>sp|Y1030_METLZ|UPF0210 protein Mlab_1030|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 IPEAVCCSD 9
IP+A+ C++
Sbjct: 136 IPQALACTE 144


>sp|Y1514_ARCFU|UNCHARACTERIZED protein AF_1514|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PEAVCCSD 9
PE CC +
Sbjct: 49 PEVYCCGE 56




80|Sequence|396|405|CCSDHQHCCP

>sp|LYSK_AERPE|PUTATIVE [LysW]-lysine/[LysW]-ornithine hydrolase|Aeropyrum pernix (strain

Query: 1 CCSDHQHCC 9
C S HQH C
Sbjct: 246 CSSLHQHRC 254


>sp|HMPTM_METJA|7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN dimethyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 3 SDHQHC 8
S HQHC
Sbjct: 333 SSHQHC 338


>sp|ASSY_HALSA|ARGININOSUCCINATE synthase|Halobacterium salinarum (strain ATCC 700922

Query: 3 SDHQHCCP 10
SDH C P
Sbjct: 134 SDHDVCAP 141


>sp|NIKR_METVS|PUTATIVE nickel-responsive regulator|Methanococcus vannielii (strain ATCC

Query: 4 DHQHC 8
DH HC
Sbjct: 95 DHDHC 99


>sp|NIKR_METMP|PUTATIVE nickel-responsive regulator|Methanococcus maripaludis (strain DSM

Query: 4 DHQHC 8
DH HC
Sbjct: 95 DHDHC 99


>sp|NIKR_METM7|PUTATIVE nickel-responsive regulator|Methanococcus maripaludis (strain C7

Query: 4 DHQHC 8
DH HC
Sbjct: 95 DHDHC 99


>sp|NIKR_METM6|PUTATIVE nickel-responsive regulator|Methanococcus maripaludis (strain C6

Query: 4 DHQHC 8
DH HC
Sbjct: 95 DHDHC 99


>sp|NIKR_METM5|PUTATIVE nickel-responsive regulator|Methanococcus maripaludis (strain C5

Query: 4 DHQHC 8
DH HC
Sbjct: 95 DHDHC 99


>sp|NIKR_METJA|PUTATIVE nickel-responsive regulator|Methanocaldococcus jannaschii (strain

Query: 4 DHQHC 8
DH HC
Sbjct: 95 DHDHC 99


>sp|TRM1_METPE|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosphaerula palustris

Query: 5 HQHCCP 10
H H CP
Sbjct: 252 HDHVCP 257


>sp|RL2_METMJ|LARGE ribosomal subunit protein uL2|Methanoculleus marisnigri (strain

Query: 5 HQHC 8
HQHC
Sbjct: 207 HQHC 210


>sp|CBIA_METM7|COBYRINATE a,c-diamide synthase|Methanococcus maripaludis (strain C7 /

Query: 5 HQHC 8
HQHC
Sbjct: 431 HQHC 434


>sp|CBIA_METM5|COBYRINATE a,c-diamide synthase|Methanococcus maripaludis (strain C5 /

Query: 5 HQHC 8
HQHC
Sbjct: 431 HQHC 434


>sp|TTH_ACIAM|TETRATHIONATE hydrolase|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 4 DHQHC 8
DHQ+C
Sbjct: 220 DHQYC 224


>sp|PYRI_THEKO|ASPARTATE carbamoyltransferase regulatory chain|Thermococcus kodakarensis

Query: 1 CCSDHQHCCP 10
C S+H++ P
Sbjct: 113 CVSNHEYVTP 122


>sp|UVRC_NATPD|UVRABC system protein C|Natronomonas pharaonis (strain ATCC 35678

Query: 2 CSDHQH 7
CSDH++
Sbjct: 149 CSDHKY 154


>sp|UVRC_HALWD|UVRABC system protein C|Haloquadratum walsbyi (strain DSM 16790

Query: 2 CSDHQH 7
CSDH++
Sbjct: 149 CSDHKY 154


Query: 2 CSDHQH 7
CS+H H
Sbjct: 322 CSEHPH 327


>sp|UVRC_HALMA|UVRABC system protein C|Haloarcula marismortui (strain ATCC 43049

Query: 2 CSDHQH 7
CSDH++
Sbjct: 153 CSDHKY 158


>sp|UVRC_HALLT|UVRABC system protein C|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 CSDHQH 7
CSDH++
Sbjct: 149 CSDHKY 154


>sp|TFE_HYPBU|TRANSCRIPTION factor E|Hyperthermus butylicus (strain DSM 5456

Query: 4 DHQHCCP 10
DH+ CP
Sbjct: 131 DHEFICP 137


>sp|HISX_PYRFU|HISTIDINOL dehydrogenase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 CSDHQHCC 9
CS + CC
Sbjct: 258 CSSLEECC 265




81|Sequence|401|410|QHCCPQGYTC

>sp|OTC_METKA|ORNITHINE carbamoyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 2 HCCPQGYTC 10
H P+GY C
Sbjct: 185 HAVPEGYEC 193


>sp|OTC_METST|ORNITHINE carbamoyltransferase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 CPQGY 8
CP+GY
Sbjct: 176 CPEGY 180


>sp|OTC_METS3|ORNITHINE carbamoyltransferase|Methanobrevibacter smithii (strain ATCC 35061

Query: 4 CPQGY 8
CP+GY
Sbjct: 176 CPEGY 180


>sp|OTC_METMA|ORNITHINE carbamoyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 CPQGY 8
CP+GY
Sbjct: 181 CPEGY 185


>sp|DTDA_METB6|D-AMINOACYL-TRNA deacylase|Methanoregula boonei (strain DSM 21154

Query: 4 CPQGY 8
CP+GY
Sbjct: 115 CPEGY 119


>sp|OTC_METBF|ORNITHINE carbamoyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 4 CPQGY 8
CP+GY
Sbjct: 181 CPKGY 185


>sp|OTC_METAC|ORNITHINE carbamoyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 CPQGY 8
CP+GY
Sbjct: 181 CPKGY 185


>sp|GGR_METVS|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus vannielii (strain ATCC 35089

Query: 4 CPQGY 8
CP+GY
Sbjct: 202 CPKGY 206


>sp|GGR_METMP|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain DSM 14266

Query: 4 CPQGY 8
CP+GY
Sbjct: 202 CPKGY 206


>sp|GGR_METM7|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain C7 /

Query: 4 CPQGY 8
CP+GY
Sbjct: 202 CPKGY 206


>sp|GGR_METM6|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain C6 /

Query: 4 CPQGY 8
CP+GY
Sbjct: 202 CPKGY 206


>sp|GGR_METM5|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain C5 /

Query: 4 CPQGY 8
CP+GY
Sbjct: 202 CPKGY 206


>sp|GGR_META3|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 CPQGY 8
CP+GY
Sbjct: 203 CPKGY 207


>sp|SYS_METAC|SERINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 CCPQGY 8
CC GY
Sbjct: 220 CCADGY 225




82|Sequence|406|415|QGYTCVAEGQ

>sp|VHUG_METVO|F420-NON-REDUCING hydrogenase vhu subunit G|Methanococcus voltae

Query: 1 QGYTCVAEG 9
QGYTCV G
Sbjct: 210 QGYTCVGMG 218


>sp|RL21_THEAC|LARGE ribosomal subunit protein eL21|Thermoplasma acidophilum (strain

Query: 1 QGYTCVAEG 9
QGYT V EG
Sbjct: 59 QGYTGVVEG 67


>sp|GATA_METBU|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanococcoides burtonii (strain DSM

Query: 2 GYTCVAEG 9
GYTC ++G
Sbjct: 37 GYTCTSDG 44


>sp|VHUG_METJA|F420-NON-REDUCING hydrogenase vhu subunit G|Methanocaldococcus jannaschii (strain

Query: 1 QGYTCVA 7
QGYTC+
Sbjct: 211 QGYTCLG 217


>sp|RL21_THEVO|LARGE ribosomal subunit protein eL21|Thermoplasma volcanium (strain

Query: 1 QGYTCVAEG 9
QGYT + EG
Sbjct: 59 QGYTGIVEG 67


>sp|SYI_PYRAE|ISOLEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 YTCVAEGQ 10
Y CV EG+
Sbjct: 875 YLCVKEGE 882


>sp|KAD6_THEAC|PUTATIVE adenylate kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 GYTCV 6
GYTCV
Sbjct: 23 GYTCV 27


>sp|DP2L_HALWD|DNA polymerase II large subunit|Haloquadratum walsbyi (strain DSM 16790

Query: 4 TCVAEG 9
TCV+EG
Sbjct: 1567 TCVSEG 1572


>sp|RL3_METKA|LARGE ribosomal subunit protein uL3|Methanopyrus kandleri (strain AV19 /

Query: 2 GYTCVAEG 9
GY CV E
Sbjct: 98 GYRCVTEA 105


>sp|HIS8_HALVD|HISTIDINOL-PHOSPHATE aminotransferase|Haloferax volcanii (strain ATCC 29605

Query: 2 GYTCVAEG 9
GY CV E
Sbjct: 232 GYACVPEA 239


>sp|Y1658_PYRIL|UPF0201 protein Pisl_1658|Pyrobaculum islandicum (strain DSM 4184

Query: 1 QGYTCV 6
+GYTC+
Sbjct: 47 EGYTCL 52




83|Sequence|411|420|VAEGQCQRGS

>sp|TRPE_HALVD|ANTHRANILATE synthase component 1|Haloferax volcanii (strain ATCC 29605

Query: 4 GQCQRGS 10
G CQRGS
Sbjct: 332 GTCQRGS 338


>sp|TRPE1_HALSA|ANTHRANILATE synthase component 1 1|Halobacterium salinarum (strain ATCC 700922

Query: 4 GQCQRGS 10
G CQRG+
Sbjct: 333 GTCQRGA 339


>sp|SYM_METAR|METHIONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 5 QCQRG 9
QCQRG
Sbjct: 140 QCQRG 144


>sp|Y619_METMP|UPF0251 protein MMP0619|Methanococcus maripaludis (strain DSM 14266

Query: 3 EGQCQRG 9
E +CQRG
Sbjct: 106 EDECQRG 112


>sp|SYI_HALMA|ISOLEUCINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 VAEGQCQR 8
V EGQC R
Sbjct: 395 VREGQCWR 402


>sp|TKTN_METJA|PUTATIVE transketolase N-terminal section|Methanocaldococcus jannaschii

Query: 1 VAEGQCQRG 9
+ +G+CQ G
Sbjct: 147 LGDGECQEG 155




84|Sequence|416|425|CQRGSEIVAG

>sp|TBP1_METAC|TATA-BOX-BINDING protein 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 CQRGSEIV 8
C+RG E+V
Sbjct: 166 CERGVEVV 173


>sp|IF2P_METHJ|PROBABLE translation initiation factor IF-2|Methanospirillum hungatei JF-1

Query: 3 RGSEIVAG 10
RGS +VAG
Sbjct: 41 RGSSVVAG 48


>sp|IF2P_METLZ|PROBABLE translation initiation factor IF-2|Methanocorpusculum labreanum

Query: 3 RGSEIVAG 10
RGS++VAG
Sbjct: 28 RGSKVVAG 35


>sp|PGK_AERPE|PHOSPHOGLYCERATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 1 CQRGSEIVA 9
C RG+ +VA
Sbjct: 56 CDRGAAVVA 64


>sp|QUEC_METBF|7-CYANO-7-DEAZAGUANINE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 CQRGSEIVAG 10
C RG EI G
Sbjct: 195 CYRGEEIPCG 204




85|Sequence|421|430|EIVAGLEKMP

>sp|FLPA_METM7|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis

Query: 2 IVAGLEKMP 10
I+ GL+KMP
Sbjct: 63 IINGLKKMP 71


>sp|FLPA_METM6|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis

Query: 2 IVAGLEKMP 10
I+ GL+KMP
Sbjct: 63 IINGLKKMP 71


>sp|FLPA_METM5|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis

Query: 2 IVAGLEKMP 10
I+ GL+KMP
Sbjct: 63 IINGLKKMP 71


>sp|FLPA_METVS|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus vannielii (strain

Query: 2 IVAGLEKMP 10
I+ GL+KMP
Sbjct: 63 IINGLKKMP 71


>sp|FLPA_METMP|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis

Query: 2 IVAGLEKMP 10
I+ GL+KMP
Sbjct: 63 IINGLKKMP 71


>sp|SYE_CENSY|GLUTAMATE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 1 EIVAGLEKMP 10
+IVAG+ MP
Sbjct: 52 DIVAGINAMP 61


>sp|COFH_METAR|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanocella arvoryzae (strain DSM

Query: 3 VAGLEKMP 10
VAGL MP
Sbjct: 155 VAGLNSMP 162


>sp|MCH_METLZ|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 EIVAGLEKMP 10
EIV LEK+P
Sbjct: 242 EIVDYLEKIP 251


>sp|CAS6L_PYRFU|PUTATIVE CRISPR-associated endoribonuclease-like protein Cas6|Pyrococcus

Query: 2 IVAGLEKMP 10
IV G+EK P
Sbjct: 90 IVEGIEKSP 98


>sp|NRPR_METMP|GLOBAL nitrogen regulator NrpR|Methanococcus maripaludis (strain DSM 14266

Query: 2 IVAGLEKMP 10
I+AG+ K+P
Sbjct: 448 ILAGIRKVP 456




86|Sequence|426|435|LEKMPARRAS

>sp|MCRX_METTM|METHYL-COENZYME M reductase II subunit|Methanothermobacter marburgensis (strain

Query: 4 MPARRA 9
MPARRA
Sbjct: 270 MPARRA 275


>sp|MCRX_METTH|METHYL-COENZYME M reductase II subunit|Methanothermobacter thermautotrophicus

Query: 4 MPARRA 9
MPARRA
Sbjct: 270 MPARRA 275


>sp|MCRA_METBF|METHYL-COENZYME M reductase subunit alpha|Methanosarcina barkeri (strain Fusaro /

Query: 2 EKMPARRA 9
E +PARRA
Sbjct: 279 EMLPARRA 286


>sp|MCRA_METAC|METHYL-COENZYME M reductase subunit alpha|Methanosarcina acetivorans (strain ATCC

Query: 2 EKMPARRA 9
E +PARRA
Sbjct: 279 EMLPARRA 286


>sp|MCRA_METKA|METHYL-COENZYME M reductase I subunit|Methanopyrus kandleri (strain AV19 /

Query: 2 EKMPARRA 9
E +PARRA
Sbjct: 268 EMLPARRA 275


>sp|APGM2_METJA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanocaldococcus jannaschii (strain

Query: 1 LEKMPA 6
LEKMPA
Sbjct: 224 LEKMPA 229




87|Sequence|431|440|ARRASLSHPR

>sp|KAE1B_METAC|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 ARRASLSHP 9
ARRA L HP
Sbjct: 169 ARRAGLPHP 177


>sp|TF2B_AERPE|TRANSCRIPTION initiation factor IIB|Aeropyrum pernix (strain ATCC 700893

Query: 3 RASLSHPR 10
ASL HPR
Sbjct: 81 EASLEHPR 88


>sp|RL13_METST|LARGE ribosomal subunit protein uL13|Methanosphaera stadtmanae (strain

Query: 3 RASLSHPR 10
RAS+S+PR
Sbjct: 56 RASISNPR 63


>sp|PRIS_NATPD|DNA primase small subunit PriS|Natronomonas pharaonis (strain ATCC

Query: 2 RRASLSHP 9
RRASLS P
Sbjct: 18 RRASLSPP 25


>sp|RL39_METPE|LARGE ribosomal subunit protein eL39|Methanosphaerula palustris (strain

Query: 1 ARRASLSHPR 10
+RA +SHP+
Sbjct: 30 TKRAVVSHPK 39




88|Sequence|436|445|LSHPRDIGCD

>sp|NFI_NANEQ|BIFUNCTIONAL methyltransferase-like/endonuclease|Nanoarchaeum equitans (strain

Query: 1 LSHPRDIG 8
LSHPR +G
Sbjct: 201 LSHPRKMG 208


>sp|Y1302_METJA|UNCHARACTERIZED polyferredoxin-like protein MJ1302|Methanocaldococcus jannaschii

Query: 3 HPRDIG 8
HPRD+G
Sbjct: 123 HPRDVG 128


>sp|TYW1_METJA|S-ADENOSYL-L-METHIONINE-DEPENDENT tRNA 4-demethylwyosine synthase|Methanocaldococcus jannaschii

Query: 4 PRDIGCD 10
PRDIG D
Sbjct: 74 PRDIGID 80


>sp|TRPD_META3|ANTHRANILATE phosphoribosyltransferase|Methanococcus aeolicus (strain ATCC

Query: 3 HPRDIG 8
HP+DIG
Sbjct: 241 HPKDIG 246


>sp|IORA_PYRAB|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus abyssi (strain GE5 /

Query: 3 HPRDIGC 9
+P DIGC
Sbjct: 407 YPSDIGC 413


>sp|IORA_THEKO|INDOLEPYRUVATE oxidoreductase subunit IorA|Thermococcus kodakarensis (strain ATCC

Query: 3 HPRDIGC 9
+P DIGC
Sbjct: 407 YPSDIGC 413


>sp|TBP3_METAC|TATA-BOX-BINDING protein 3|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 RDIGCD 10
+DIGCD
Sbjct: 85 KDIGCD 90


>sp|FENR_PICTO|FERREDOXIN--NADP reductase|Picrophilus torridus (strain ATCC 700027

Query: 4 PRDIGCD 10
PR IGC+
Sbjct: 122 PRKIGCE 128


>sp|RL13_METST|LARGE ribosomal subunit protein uL13|Methanosphaera stadtmanae (strain

Query: 1 LSHPRDIG 8
+S+PRD+G
Sbjct: 59 ISNPRDLG 66


>sp|TF2B_AERPE|TRANSCRIPTION initiation factor IIB|Aeropyrum pernix (strain ATCC 700893

Query: 1 LSHPRDIG 8
L HPRD G
Sbjct: 84 LEHPRDHG 91


>sp|RFCS_STAMF|REPLICATION factor C small subunit|Staphylothermus marinus (strain ATCC 43588

Query: 1 LSHPRDI 7
L+HPR+I
Sbjct: 230 LAHPREI 236


>sp|IORA_PYRHO|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus horikoshii (strain ATCC

Query: 4 PRDIGC 9
P DIGC
Sbjct: 408 PSDIGC 413


>sp|HMD_METJA|5,10-METHENYLTETRAHYDROMETHANOPTERIN hydrogenase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LSHPRDIG 8
L HP D+G
Sbjct: 121 LVHPEDVG 128


>sp|IORA_ARCFU|INDOLEPYRUVATE oxidoreductase subunit IorA|Archaeoglobus fulgidus (strain ATCC

Query: 4 PRDIGC 9
P DIGC
Sbjct: 402 PSDIGC 407


>sp|AROC_ARCFU|CHORISMATE synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 SHPRDIGC 9
SH R +GC
Sbjct: 16 SHGRAVGC 23


>sp|DAPAL_PYRFU|UNCHARACTERIZED DapA-like lyase PF0657|Pyrococcus furiosus (strain ATCC 43587

Query: 3 HPRDIGCD 10
H +DIG D
Sbjct: 89 HAKDIGAD 96


>sp|IORA_METTM|INDOLEPYRUVATE oxidoreductase subunit IorA|Methanothermobacter marburgensis

Query: 1 LSHPRDIGC 9
L P DIGC
Sbjct: 398 LIFPTDIGC 406


>sp|RNH_SULTO|RIBONUCLEASE HI|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 RDIGC 9
RDIGC
Sbjct: 141 RDIGC 145


>sp|HMD_METTW|5,10-METHENYLTETRAHYDROMETHANOPTERIN hydrogenase|Methanothermobacter thermautotrophicus (strain Winter)

Query: 1 LSHPRDIG 8
+HP D+G
Sbjct: 117 FTHPEDLG 124


>sp|HMD_METTM|5,10-METHENYLTETRAHYDROMETHANOPTERIN hydrogenase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 1 LSHPRDIG 8
+HP D+G
Sbjct: 117 FTHPEDLG 124


>sp|HMD_METTF|5,10-METHENYLTETRAHYDROMETHANOPTERIN hydrogenase|Methanothermobacter thermautotrophicus

Query: 1 LSHPRDIG 8
+HP D+G
Sbjct: 117 FTHPEDLG 124


>sp|HMD_METTH|5,10-METHENYLTETRAHYDROMETHANOPTERIN hydrogenase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 LSHPRDIG 8
+HP D+G
Sbjct: 117 FTHPEDLG 124


>sp|ILVC_METBU|KETOL-ACID reductoisomerase (NADP(+))|Methanococcoides burtonii (strain DSM

Query: 1 LSHPRDIGC 9
L+H + +GC
Sbjct: 166 LAHAKGVGC 174


>sp|IORA_METTH|INDOLEPYRUVATE oxidoreductase subunit IorA|Methanothermobacter thermautotrophicus

Query: 4 PRDIGC 9
P DIGC
Sbjct: 401 PTDIGC 406


>sp|SYFB_THESM|PHENYLALANINE--TRNA ligase beta subunit|Thermococcus sibiricus (strain DSM 12597

Query: 1 LSHPRDI 7
+ HPRD+
Sbjct: 333 IMHPRDV 339


>sp|RIBL_METKA|FAD synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 LSHPRD 6
L HPRD
Sbjct: 74 LGHPRD 79


>sp|GATA_METVS|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanococcus vannielii (strain ATCC

Query: 5 RDIGCD 10
RD+GC+
Sbjct: 258 RDLGCE 263


>sp|DAPAL_THEKO|UNCHARACTERIZED DapA-like lyase TK1237|Thermococcus kodakarensis (strain ATCC

Query: 3 HPRDIGCD 10
H +DIG D
Sbjct: 89 HAQDIGAD 96


>sp|RL10_METST|LARGE ribosomal subunit protein uL10|Methanosphaera stadtmanae (strain

Query: 3 HPRDIGCD 10
HP ++G D
Sbjct: 178 HPMEVGID 185




89|Sequence|441|450|DIGCDQHTSC

>sp|GSA_HALWD|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 GCDQHTSC 10
GC+Q SC
Sbjct: 373 GCEQRESC 380


>sp|TBP3_METAC|TATA-BOX-BINDING protein 3|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 DIGCDQ 6
DIGCD+
Sbjct: 86 DIGCDK 91


>sp|PYRC_METMA|DIHYDROOROTASE mazei (strain ATCC BAA-159

Query: 1 DIGCDQHT 8
D+ CD H+
Sbjct: 197 DVSCDYHS 204


>sp|RIBL_METHJ|FAD synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 IGCDQH 7
+GC+QH
Sbjct: 89 LGCNQH 94


>sp|GSA_HALMA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Haloarcula marismortui (strain ATCC 43049

Query: 1 DIGCDQHTSC 10
+ GC Q SC
Sbjct: 370 EAGCQQQESC 379


>sp|SYM_METMJ|METHIONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 DIGCDQH 7
D GC QH
Sbjct: 157 DQGCGQH 163


>sp|MFNB_METS3|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 DIGCD 5
DIGCD
Sbjct: 199 DIGCD 203




90|Sequence|446|455|QHTSCPVGQT

>sp|TRI_THEVO|TRICORN protease|Thermoplasma volcanium (strain ATCC 51530

Query: 2 HTSCPV 7
H SCPV
Sbjct: 191 HISCPV 196


>sp|PTFB_HALVD|PTS system fructose-specific EIIB component|Haloferax volcanii

Query: 3 TSCPVG 8
TSCP G
Sbjct: 7 TSCPTG 12


>sp|SYS_THEKO|SERINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 HTSCPVGQT 10
H S PVG++
Sbjct: 111 HESVPVGES 119


>sp|SYY_METTH|TYROSINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 QHTSCPVGQT 10
+ + CP+G+T
Sbjct: 235 KKSYCPMGET 244


>sp|DCDA_THEAC|DIAMINOPIMELATE decarboxylase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 QHTSCPVGQ 9
+HT PVG+
Sbjct: 311 RHTIIPVGE 319




91|Sequence|451|460|PVGQTCCPSL

>sp|ATGT_KORCO|TRNA-GUANINE(15) transglycosylase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 PVGQTCCP 8
P GQT CP
Sbjct: 414 PFGQTICP 421


>sp|HDLB_ARCPA|HETERODISULFIDE reductase subunit B-like protein|Archaeoglobus profundus (strain

Query: 2 VGQTCCPS 9
VGQ+CCP+
Sbjct: 38 VGQSCCPT 45


>sp|AMPPA_METTP|AMP phosphorylase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 PVGQTCCPSL 10
PVG+T P+L
Sbjct: 321 PVGRTVGPAL 330


>sp|AMPPA_METBU|AMP phosphorylase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PVGQTCCPSL 10
PVG+T P+L
Sbjct: 323 PVGRTIGPAL 332


>sp|TFRB_METTM|FUMARATE reductase (CoM/CoB) subunit B|Methanothermobacter marburgensis

Query: 1 PVGQTCCPS 9
P GQ CC S
Sbjct: 294 PDGQVCCGS 302


>sp|Y1372_METAC|UPF0212 protein MA_1372|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 VGQTCCPS 9
VG T CP+
Sbjct: 46 VGSTSCPA 53


>sp|HYPF_METJA|PROBABLE carbamoyltransferase HypF|Methanocaldococcus jannaschii (strain

Query: 5 TCCP 8
TCCP
Sbjct: 187 TCCP 190


>sp|MPTA_METMA|GTP cyclohydrolase MptA|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 VGQTCCP 8
VG T CP
Sbjct: 162 VGMTACP 168


>sp|MPTA_METBU|GTP cyclohydrolase MptA|Methanococcoides burtonii (strain DSM 6242

Query: 2 VGQTCCP 8
VG T CP
Sbjct: 160 VGMTACP 166


>sp|MPTA_METBF|GTP cyclohydrolase MptA|Methanosarcina barkeri (strain Fusaro /

Query: 2 VGQTCCP 8
VG T CP
Sbjct: 162 VGMTACP 168


>sp|MPTA_METAC|GTP cyclohydrolase MptA|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 VGQTCCP 8
VG T CP
Sbjct: 162 VGMTACP 168


>sp|Y282_ARCFU|UPF0212 protein AF_0282|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 VGQTCCP 8
VG T CP
Sbjct: 46 VGDTACP 52


>sp|MPTA_AERPE|GTP cyclohydrolase MptA|Aeropyrum pernix (strain ATCC 700893

Query: 3 GQTCCPS 9
G T CPS
Sbjct: 143 GMTVCPS 149


>sp|MPTA_NATPD|GTP cyclohydrolase MptA|Natronomonas pharaonis (strain ATCC 35678

Query: 2 VGQTCCP 8
VG T CP
Sbjct: 153 VGMTVCP 159


>sp|MPTA_METTH|GTP cyclohydrolase MptA|Methanothermobacter thermautotrophicus (strain

Query: 2 VGQTCCP 8
VG T CP
Sbjct: 157 VGMTVCP 163


>sp|MPTA_HALVD|GTP cyclohydrolase MptA|Haloferax volcanii (strain ATCC 29605

Query: 2 VGQTCCP 8
VG T CP
Sbjct: 152 VGMTVCP 158


>sp|MPTA_HALSA|GTP cyclohydrolase MptA|Halobacterium salinarum (strain ATCC 700922

Query: 2 VGQTCCP 8
VG T CP
Sbjct: 153 VGMTVCP 159


>sp|MPTA_HALS3|GTP cyclohydrolase MptA|Halobacterium salinarum (strain ATCC 29341

Query: 2 VGQTCCP 8
VG T CP
Sbjct: 153 VGMTVCP 159


>sp|SYM_META3|METHIONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 PVGQTCC 7
PVG T C
Sbjct: 666 PVGSTIC 672


>sp|MPTA_THEKO|GTP cyclohydrolase MptA|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 VGQTCCP 8
+G T CP
Sbjct: 152 IGNTACP 158


>sp|MPTA_PYRHO|GTP cyclohydrolase MptA|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 VGQTCCP 8
+G T CP
Sbjct: 154 IGNTACP 160


>sp|MPTA_PYRFU|GTP cyclohydrolase MptA|Pyrococcus furiosus (strain ATCC 43587

Query: 2 VGQTCCP 8
+G T CP
Sbjct: 152 IGNTACP 158


>sp|MPTA_PYRAB|GTP cyclohydrolase MptA|Pyrococcus abyssi (strain GE5 /

Query: 2 VGQTCCP 8
+G T CP
Sbjct: 151 IGNTACP 157


>sp|NADA1_METAC|QUINOLINATE synthase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 6 CCPSL 10
CCPS+
Sbjct: 258 CCPSM 262


>sp|NADA_METMA|QUINOLINATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 6 CCPSL 10
CCPS+
Sbjct: 258 CCPSM 262


>sp|NADA_METBF|QUINOLINATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 6 CCPSL 10
CCPS+
Sbjct: 258 CCPSM 262


>sp|Y092_METJA|UNCHARACTERIZED iron-sulfur protein MJ0092|Methanocaldococcus jannaschii (strain

Query: 1 PVGQTCCPS 9
P Q CC S
Sbjct: 295 PKNQVCCGS 303




92|Sequence|456|465|CCPSLGGSWA

>sp|LIPA_NATPD|LIPOYL synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 CPSLGGSWA 10
CP+LG W+
Sbjct: 42 CPNLGDCWS 50


>sp|LIPA_HALSA|LIPOYL synthase|Halobacterium salinarum (strain ATCC 700922

Query: 2 CPSLGGSWA 10
CP++G W+
Sbjct: 41 CPNMGECWS 49


>sp|LIPA_HALS3|LIPOYL synthase|Halobacterium salinarum (strain ATCC 29341

Query: 2 CPSLGGSWA 10
CP++G W+
Sbjct: 41 CPNMGECWS 49


>sp|LIPA_HALLT|LIPOYL synthase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 CPSLGGSWA 10
CP++G W+
Sbjct: 42 CPNMGECWS 50


>sp|RLME_METAR|RIBOSOMAL RNA large subunit methyltransferase|Methanocella arvoryzae (strain

Query: 3 PSLGGSWA 10
P+L G+WA
Sbjct: 111 PNLSGNWA 118


>sp|GATA_METMA|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanosarcina mazei (strain ATCC

Query: 2 CPSLGGSW 9
C SLG +W
Sbjct: 277 CESLGATW 284


>sp|AROC_THEKO|CHORISMATE synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 PSLGGSW 9
P LGG W
Sbjct: 211 PGLGGPW 217


>sp|SYA_NITMS|ALANINE--TRNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 3 PSLGGSW 9
P LGG W
Sbjct: 165 PDLGGYW 171


>sp|LEUC_METMA|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina mazei

Query: 1 CC-PSLGGSWA 10
CC P +GGS+
Sbjct: 360 CCGPCMGGSFG 370


>sp|LEUC_METAC|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina

Query: 1 CC-PSLGGSWA 10
CC P +GGS+
Sbjct: 360 CCGPCMGGSFG 370


>sp|LEUC1_ARCFU|3-ISOPROPYLMALATE dehydratase large subunit 1|Archaeoglobus fulgidus (strain ATCC

Query: 1 CC-PSLGGSWA 10
CC P +GGS+
Sbjct: 357 CCGPCMGGSFG 367


>sp|DAPAL_THEAC|UNCHARACTERIZED DapA-like lyase Ta1157|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 PSLGGSW 9
P L GSW
Sbjct: 135 PQLSGSW 141


>sp|LEUC_METB6|3-ISOPROPYLMALATE dehydratase large subunit|Methanoregula boonei (strain DSM 21154

Query: 1 CCPSLGGSWA 10
C P +GGS+
Sbjct: 357 CGPCMGGSFG 366


>sp|Y1536_PYRFU|UNCHARACTERIZED protein PF1536|Pyrococcus furiosus (strain ATCC 43587

Query: 3 PSLGGSW 9
P GGSW
Sbjct: 90 PYCGGSW 96


>sp|GFCR_METPE|TRANSCRIPTIONAL regulator GfcR|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 CPSLGGS 8
CPSLG +
Sbjct: 89 CPSLGSN 95


>sp|Y043_METJA|UNCHARACTERIZED protein MJ0043|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CPSLGGS 8
CP GGS
Sbjct: 650 CPKCGGS 656


>sp|RLME_METMA|RIBOSOMAL RNA large subunit methyltransferase|Methanosarcina mazei (strain

Query: 3 PSLGGSWA 10
P+L G+W+
Sbjct: 112 PNLSGNWS 119


>sp|RLME_METBU|RIBOSOMAL RNA large subunit methyltransferase|Methanococcoides burtonii

Query: 3 PSLGGSWA 10
P+L G+W+
Sbjct: 112 PNLSGNWS 119


>sp|RLME_METBF|RIBOSOMAL RNA large subunit methyltransferase|Methanosarcina barkeri (strain

Query: 3 PSLGGSWA 10
P+L G+W+
Sbjct: 112 PNLSGNWS 119


>sp|RLME_METAC|RIBOSOMAL RNA large subunit methyltransferase|Methanosarcina acetivorans

Query: 3 PSLGGSWA 10
P+L G+W+
Sbjct: 112 PNLSGNWS 119


>sp|COBS_SACI7|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 CPSLGGS 8
C SLGGS
Sbjct: 206 CRSLGGS 212


>sp|COBS_SACI6|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 CPSLGGS 8
C SLGGS
Sbjct: 206 CRSLGGS 212


>sp|COBS_SACI4|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 CPSLGGS 8
C SLGGS
Sbjct: 206 CRSLGGS 212


>sp|COBS_SACI3|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain M.16.27)

Query: 2 CPSLGGS 8
C SLGGS
Sbjct: 206 CRSLGGS 212


>sp|COBS_SACI2|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 CPSLGGS 8
C SLGGS
Sbjct: 206 CRSLGGS 212


>sp|COBS_SACI1|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 CPSLGGS 8
C SLGGS
Sbjct: 206 CRSLGGS 212


>sp|COBS_SACS2|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 CPSLGGS 8
C SLGGS
Sbjct: 206 CGSLGGS 212


>sp|Y405_HALVD|PROBABLE cell surface fusion protein|Haloferax volcanii (strain ATCC 29605

Query: 3 PSLGGSW 9
P+LGG W
Sbjct: 329 PTLGGVW 335


>sp|SYI_AERPE|ISOLEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 CPSLGGS 8
CP GGS
Sbjct: 514 CPRCGGS 520


>sp|COFC_METVS|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus vannielii (strain ATCC 35089

Query: 2 CPSLGG 7
CPS GG
Sbjct: 125 CPSRGG 130


>sp|COFC_METMP|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain DSM 14266

Query: 2 CPSLGG 7
CPS GG
Sbjct: 125 CPSRGG 130


>sp|COFC_METM7|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain C7 /

Query: 2 CPSLGG 7
CPS GG
Sbjct: 125 CPSRGG 130


>sp|COFC_METM6|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain C6 /

Query: 2 CPSLGG 7
CPS GG
Sbjct: 125 CPSRGG 130


>sp|COFC_METM5|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain C5 /

Query: 2 CPSLGG 7
CPS GG
Sbjct: 125 CPSRGG 130


>sp|COFC_META3|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 CPSLGG 7
CPS GG
Sbjct: 125 CPSRGG 130


>sp|SYE_HALSA|GLUTAMATE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 CCPSLGGSW 9
C P+ G W
Sbjct: 112 CAPNPNGPW 120


>sp|SYE_HALS3|GLUTAMATE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 1 CCPSLGGSW 9
C P+ G W
Sbjct: 112 CAPNPNGPW 120




93|Sequence|461|470|GGSWACCQLP

>sp|AATD_ARCFU|A-TYPE ATP synthase subunit D|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 ACCQLP 10
+CCQ+P
Sbjct: 82 SCCQIP 87


>sp|PMDHL_METJA|PHOSPHOMEVALONATE dehydratase large subunit|Methanocaldococcus jannaschii (strain

Query: 4 WACCQL 9
W CC L
Sbjct: 326 WVCCSL 331


>sp|MTAP_CENSY|S-METHYL-5'-THIOADENOSINE phosphorylase|Cenarchaeum symbiosum (strain A)

Query: 1 GGSWACCQLP 10
GG++AC + P
Sbjct: 133 GGTYACIEGP 142


>sp|SECD_HALWD|PROTEIN-EXPORT membrane protein SecD|Haloquadratum walsbyi (strain DSM 16790

Query: 1 GGSWA 5
GGSWA
Sbjct: 305 GGSWA 309




94|Sequence|466|475|CCQLPHAVCC

>sp|DTDA_HYPBU|D-AMINOACYL-TRNA deacylase|Hyperthermus butylicus (strain DSM 5456

Query: 2 CQLPHAVCC 10
C LP AV C
Sbjct: 29 CSLPRAVEC 37


>sp|SYR_METJA|ARGININE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 QLPHAVCC 10
Q HA CC
Sbjct: 449 QYAHARCC 456


>sp|SYR_METAR|ARGININE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 3 QLPHAVCC 10
Q HA CC
Sbjct: 452 QYAHARCC 459


>sp|SYR_META3|ARGININE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 QLPHAVCC 10
Q HA CC
Sbjct: 455 QYAHARCC 462


>sp|MFNA_METB6|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanoregula boonei (strain

Query: 2 CQLPHAV 8
C LPH V
Sbjct: 33 CTLPHPV 39


>sp|RS5_METMA|SMALL ribosomal subunit protein uS5|Methanosarcina mazei (strain ATCC

Query: 2 CQLPHAV 8
C LPH V
Sbjct: 122 CGLPHTV 128


>sp|RS5_METBU|SMALL ribosomal subunit protein uS5|Methanococcoides burtonii (strain DSM

Query: 2 CQLPHAV 8
C LPH V
Sbjct: 124 CGLPHTV 130


>sp|RS5_METBF|SMALL ribosomal subunit protein uS5|Methanosarcina barkeri (strain Fusaro

Query: 2 CQLPHAV 8
C LPH V
Sbjct: 122 CGLPHTV 128


>sp|RS5_METAC|SMALL ribosomal subunit protein uS5|Methanosarcina acetivorans (strain

Query: 2 CQLPHAV 8
C LPH V
Sbjct: 122 CGLPHTV 128


>sp|SYL_META3|LEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 CCQLPH 6
C +LPH
Sbjct: 688 CAELPH 693


>sp|HDRB_METMA|FERREDOXIN:COB-COM heterodisulfide reductase subunit B|Methanosarcina mazei (strain

Query: 2 CQLPHAVCC 10
C LP A CC
Sbjct: 35 CDLPGASCC 43




95|Sequence|471|480|HAVCCEDRQH

>sp|RL3_STAMF|LARGE ribosomal subunit protein uL3|Staphylothermus marinus (strain

Query: 1 HAVCCEDRQH 10
HA+ +DR H
Sbjct: 72 HAIIIDDRPH 81


>sp|RL3_PYRNV|LARGE ribosomal subunit protein uL3|Pyrobaculum neutrophilum (strain

Query: 1 HAVCCEDR 8
HAV EDR
Sbjct: 53 HAVVVEDR 60


>sp|RL3_PYRIL|LARGE ribosomal subunit protein uL3|Pyrobaculum islandicum (strain DSM

Query: 1 HAVCCEDR 8
HAV EDR
Sbjct: 57 HAVVVEDR 64


>sp|CHEB_THEKO|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Thermococcus

Query: 3 VCCEDR 8
VCCE R
Sbjct: 34 VCCEAR 39


>sp|TRPF_METTH|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 HAVCCED 7
H++ CED
Sbjct: 91 HSISCED 97


>sp|RIBB_METTH|3,4-DIHYDROXY-2-BUTANONE 4-phosphate synthase|Methanothermobacter thermautotrophicus (strain

Query: 2 AVCCE 6
AVCCE
Sbjct: 184 AVCCE 188


>sp|TRI_THEAC|TRICORN protease|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 VCCED 7
VCC+D
Sbjct: 56 VCCDD 60


>sp|AMPD_AERPE|ANHYDROMEVALONATE phosphate decarboxylase|Aeropyrum pernix (strain ATCC 700893

Query: 1 HAVCCEDRQH 10
HAV ++QH
Sbjct: 321 HAVIAVEKQH 330




96|Sequence|476|485|EDRQHCCPAG

>sp|RS27A_HALMA|SMALL ribosomal subunit protein eS31|Haloarcula marismortui (strain

Query: 1 EDRQHCCPAG 10
EDRQHC G
Sbjct: 30 EDRQHCGKCG 39


>sp|SYT_THESM|THREONINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 5 HCCPAG 10
HC P+G
Sbjct: 474 HCSPSG 479


>sp|SYT_THEON|THREONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 5 HCCPAG 10
HC P+G
Sbjct: 476 HCSPSG 481


>sp|SYT_THEKO|THREONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 5 HCCPAG 10
HC P+G
Sbjct: 475 HCSPSG 480


>sp|SYT_THEGJ|THREONINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 5 HCCPAG 10
HC P+G
Sbjct: 475 HCSPSG 480


>sp|SYT_PYRHO|THREONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 HCCPAG 10
HC P+G
Sbjct: 474 HCSPSG 479


>sp|SYT_PYRFU|THREONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 5 HCCPAG 10
HC P+G
Sbjct: 474 HCSPSG 479


>sp|SYT_PYRAB|THREONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 5 HCCPAG 10
HC P+G
Sbjct: 474 HCSPSG 479


>sp|SYT_METTP|THREONINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 5 HCCPAG 10
HC P+G
Sbjct: 469 HCSPSG 474


>sp|SYT_METMA|THREONINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 HCCPAG 10
HC P+G
Sbjct: 482 HCSPSG 487


>sp|SYT_METBU|THREONINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 5 HCCPAG 10
HC P+G
Sbjct: 483 HCSPSG 488


>sp|SYT_METBF|THREONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 5 HCCPAG 10
HC P+G
Sbjct: 483 HCSPSG 488


>sp|SYT_METAR|THREONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 5 HCCPAG 10
HC P+G
Sbjct: 485 HCSPSG 490


>sp|SYT_METAC|THREONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 HCCPAG 10
HC P+G
Sbjct: 483 HCSPSG 488


>sp|ASPD_METAR|L-ASPARTATE dehydrogenase|Methanocella arvoryzae (strain DSM 22066

Query: 3 RQHCC----PAG 10
++HCC P+G
Sbjct: 111 KEHCCSIYLPSG 122




97|Sequence|481|490|CCPAGYTCNV

>sp|MFNA_ARCFU|PROBABLE L-aspartate decarboxylase|Archaeoglobus fulgidus (strain ATCC

Query: 3 PAGYTCN 9
PAGY C+
Sbjct: 73 PAGYICS 79


>sp|GGR_PICTO|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Picrophilus torridus (strain ATCC 700027

Query: 1 CCPAGY 6
C PAGY
Sbjct: 205 CAPAGY 210


>sp|OTC_METST|ORNITHINE carbamoyltransferase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 CPAGYTCN 9
CP GY N
Sbjct: 176 CPEGYEPN 183


>sp|OTC_METS3|ORNITHINE carbamoyltransferase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 CPAGYTCN 9
CP GY N
Sbjct: 176 CPEGYEPN 183


>sp|SUDHA_PYRFU|SULFIDE dehydrogenase subunit alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 3 PAGYTC 8
PAG TC
Sbjct: 164 PAGLTC 169


>sp|Y1411_THEKO|UPF0292 protein TK1411|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 AGYTCNV 10
AGY C+V
Sbjct: 86 AGYPCSV 92


>sp|RTCA_METBU|RNA 3'-terminal phosphate cyclase|Methanococcoides burtonii (strain DSM

Query: 5 GYTCNV 10
GY CN+
Sbjct: 144 GYRCNI 149




98|Sequence|486|495|YTCNVKARSC

>sp|Y076_METJA|UNCHARACTERIZED protein MJ0076|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YTCNVKA 7
+ CN+KA
Sbjct: 42 FVCNIKA 48


>sp|Y1227_METJA|PUTATIVE glycyl-radical enzyme activating enzyme|Methanocaldococcus

Query: 1 YTCNVKARSC 10
Y CN+K C
Sbjct: 27 YGCNMKCPYC 36




99|Sequence|491|500|KARSCEKEVV

>sp|ARFB_METTM|2-AMINO-5-FORMYLAMINO-6-RIBOSYLAMINOPYRIMIDIN-4(3H)-ONE 5'-monophosphate deformylase|Methanothermobacter marburgensis

Query: 2 ARSCEKE 8
AR CEKE
Sbjct: 193 ARICEKE 199




100|Sequence|496|505|EKEVVSAQPA

>sp|DNAG_THEKO|DNA primase DnaG|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 EKEVVSAQP 9
E EVV AQP
Sbjct: 330 EPEVVKAQP 338




101|Sequence|501|510|SAQPATFLAR

>sp|RS3A_METPE|SMALL ribosomal subunit protein eS1|Methanosphaerula palustris (strain

Query: 1 SAQPATFLAR 10
SAQ ATF+A+
Sbjct: 143 SAQMATFVAQ 152




102|Sequence|506|515|TFLARSPHVG

>sp|HIS5_PYRFU|IMIDAZOLE glycerol phosphate synthase subunit|Pyrococcus furiosus (strain

Query: 5 RSPHVG 10
R+PH+G
Sbjct: 107 RTPHIG 112


>sp|DYR1_HALMA|DIHYDROFOLATE reductase 1|Haloarcula marismortui (strain ATCC 43049

Query: 1 TFLARSPHVG 10
T L+R PH G
Sbjct: 159 TELSREPHDG 168




103|Sequence|511|520|SPHVGVKDVE

>sp|HIS1_METAC|ATP phosphoribosyltransferase|Methanosarcina acetivorans (strain ATCC

Query: 1 SPHVGVKD 8
+PHVG+ D
Sbjct: 146 TPHVGIAD 153


>sp|HIS1_METBU|ATP phosphoribosyltransferase|Methanococcoides burtonii (strain DSM

Query: 1 SPHVGVKD 8
+PHVG+ D
Sbjct: 145 TPHVGIAD 152


>sp|HIS1_METBF|ATP phosphoribosyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 1 SPHVGVKD 8
+PHVG+ D
Sbjct: 146 TPHVGIAD 153


>sp|HIS1_METMA|ATP phosphoribosyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SPHVGVKD 8
+PHVG+ D
Sbjct: 146 TPHVGIAD 153


>sp|HIS1_METAR|ATP phosphoribosyltransferase|Methanocella arvoryzae (strain DSM 22066

Query: 1 SPHVGVKD 8
+PH+GV D
Sbjct: 145 TPHIGVAD 152


>sp|RS3_CENSY|SMALL ribosomal subunit protein uS3|Cenarchaeum symbiosum (strain A)

Query: 1 SPHVGVKDVE 10
SP V VK++E
Sbjct: 77 SPQVDVKEIE 86


>sp|MTM4_METJA|TYPE II methyltransferase M.MjaIV|Methanocaldococcus jannaschii

Query: 2 PHVGVKDV 9
PHV +KD+
Sbjct: 34 PHVLLKDI 41


>sp|BGAL_HALLT|BETA-GALACTOSIDASE Bga|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 PHVGVKDVE 10
P GVKD E
Sbjct: 486 PRTGVKDAE 494


>sp|Y1394_ARCFU|UNCHARACTERIZED protein AF_1394|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SPHVGVKD 8
+ H+GVKD
Sbjct: 24 ASHLGVKD 31


>sp|KPRS_METMA|RIBOSE-PHOSPHATE pyrophosphokinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 HVGVKDV 9
H GVKD+
Sbjct: 263 HAGVKDI 269




104|Sequence|516|525|VKDVECGEGH

>sp|COBS_SACS2|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 VKDVECGEG 9
+KDVE G G
Sbjct: 101 LKDVEVGSG 109


>sp|POK_METJA|PANTOATE kinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VKDVECGEG 9
+ +VECG G
Sbjct: 118 ISEVECGTG 126


>sp|Y599_METJA|UNCHARACTERIZED protein MJ0599|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 DVECGE 8
DVECG+
Sbjct: 58 DVECGD 63


>sp|F16A2_HALMA|FRUCTOSE-1,6-BISPHOSPHATASE class 1 2|Haloarcula marismortui (strain ATCC 43049

Query: 4 VECGEGH 10
V+CGEG+
Sbjct: 72 VDCGEGY 78


>sp|COBS_SACI7|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 VKDVECGEG 9
+KDVE G G
Sbjct: 101 LKDVEIGSG 109


>sp|COBS_SACI6|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 VKDVECGEG 9
+KDVE G G
Sbjct: 101 LKDVEIGSG 109


>sp|COBS_SACI4|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 VKDVECGEG 9
+KDVE G G
Sbjct: 101 LKDVEIGSG 109


>sp|COBS_SACI3|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain M.16.27)

Query: 1 VKDVECGEG 9
+KDVE G G
Sbjct: 101 LKDVEIGSG 109


>sp|COBS_SACI2|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 VKDVECGEG 9
+KDVE G G
Sbjct: 101 LKDVEIGSG 109


>sp|COBS_SACI1|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 VKDVECGEG 9
+KDVE G G
Sbjct: 101 LKDVEIGSG 109


>sp|PSA_PYRFU|PROTEASOME subunit alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 4 VECGEG 9
V+CGEG
Sbjct: 42 VKCGEG 47


>sp|DCD_AERPE|DCTP deaminase|Aeropyrum pernix (strain ATCC 700893

Query: 5 ECGEG 9
ECGEG
Sbjct: 63 ECGEG 67


>sp|Y206_METJA|UNCHARACTERIZED protein MJ0206|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VKDVECGEGH 10
+KD GEGH
Sbjct: 71 IKDTIIGEGH 80


>sp|MALE_PYRFU|MALTOTRIOSE-BINDING protein|Pyrococcus furiosus (strain ATCC 43587

Query: 4 VECGEG 9
VECG G
Sbjct: 54 VECGSG 59


>sp|Y1514_METJA|PUTATIVE gamma-glutamylcyclotransferase MJ1514|Methanocaldococcus

Query: 1 VKDVECGEGH 10
+K ++C EGH
Sbjct: 67 LKRIDCLEGH 76


>sp|GGR2_METTH|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 2|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 VKDVECG 7
V++VECG
Sbjct: 140 VQEVECG 146


>sp|GGR_THEAC|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 VECGEG 9
V CGEG
Sbjct: 42 VRCGEG 47


>sp|LHRC_METTH|ATP-DEPENDENT helicase Lhr-Core|Methanothermobacter thermautotrophicus (strain

Query: 1 VKDVECGEG 9
++D+ GEG
Sbjct: 111 IRDIAAGEG 119


>sp|HACB2_METAC|METHANOGEN homoaconitase small subunit 2|Methanosarcina acetivorans (strain

Query: 3 DVECGEG 9
DVEC EG
Sbjct: 108 DVECQEG 114


>sp|CBIT_METS3|PROBABLE cobalt-precorrin-6B C(15)-methyltransferase

Query: 1 VKDVECGEG 9
V DV CG G
Sbjct: 37 VVDVGCGTG 45


>sp|PYRK_METKA|PROBABLE dihydroorotate dehydrogenase B (NAD(+)),|Methanopyrus kandleri

Query: 1 VKDVECGEG 9
V+ V+CGEG
Sbjct: 212 VRYVKCGEG 220


>sp|GLGA_METJA|PROBABLE glycogen synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VKDVECGEGH 10
VKD++ GH
Sbjct: 116 VKDIDVVSGH 125


>sp|GGR_THEVO|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Thermoplasma volcanium (strain ATCC 51530

Query: 4 VECGEG 9
V CGEG
Sbjct: 42 VRCGEG 47


>sp|CBIT_METJA|PROBABLE cobalt-precorrin-6B C(15)-methyltransferase

Query: 1 VKDVECGEG 9
V DV CG G
Sbjct: 39 VVDVGCGSG 47


>sp|HACB1_METAC|METHANOGEN homoaconitase small subunit 1|Methanosarcina acetivorans (strain

Query: 3 DVECGEG 9
D+EC EG
Sbjct: 109 DIECQEG 115




105|Sequence|521|530|CGEGHFCHDN

>sp|CDPAS_METST|CDP-ARCHAEOL synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 GHFCHDN 10
GH+C DN
Sbjct: 36 GHYCWDN 42


>sp|PYRC_ARCFU|DIHYDROOROTASE fulgidus (strain ATCC 49558

Query: 2 GEGHFCH 8
G+ HFCH
Sbjct: 205 GKFHFCH 211


>sp|PYRC_METMA|DIHYDROOROTASE mazei (strain ATCC BAA-159

Query: 3 EGHFCH 8
+ HFCH
Sbjct: 229 KAHFCH 234


>sp|FDHA_METFO|F420-DEPENDENT formate dehydrogenase subunit alpha|Methanobacterium formicicum

Query: 1 CGEGHFCHD 9
C +G+FC++
Sbjct: 45 CPKGNFCYE 53


>sp|APE1_SULTO|PROBABLE aminopeptidase 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 EGHFCHD 9
EGHF +D
Sbjct: 314 EGHFIYD 320


>sp|PYRC_METAC|DIHYDROOROTASE acetivorans (strain ATCC 35395

Query: 4 GHFCH 8
HFCH
Sbjct: 230 AHFCH 234


>sp|Y138_METJA|PUTATIVE glutamine amidotransferase-like protein MJ0138|Methanocaldococcus

Query: 2 GEGHFCH 8
GEG CH
Sbjct: 127 GEGFHCH 133


>sp|OFOB2_SULTO|2-OXOACID:FERREDOXIN oxidoreductase 2, subunit beta|Sulfurisphaera tokodaii (strain DSM

Query: 2 GEGHFCH 8
G GHF H
Sbjct: 97 GMGHFVH 103


>sp|PYRC_METJA|DIHYDROOROTASE jannaschii (strain ATCC 43067

Query: 5 HFCH 8
HFCH
Sbjct: 224 HFCH 227


>sp|SIHH_METJA|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CGEGHFC 7
C +GH C
Sbjct: 340 CADGHPC 346


>sp|SIHH_METMP|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanococcus maripaludis (strain DSM 14266

Query: 1 CGEGHFC 7
C +GH C
Sbjct: 340 CADGHPC 346


>sp|PURQ_METTH|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Methanothermobacter thermautotrophicus

Query: 2 GEGHFCHDN 10
EG + HDN
Sbjct: 142 AEGRYYHDN 150




106|Sequence|526|535|FCHDNQTCCR

>sp|EF1A_METLZ|ELONGATION factor 1-alpha|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 CHDNQTCC 9
CH +QT C
Sbjct: 341 CHTSQTAC 348


>sp|EF1A_METB6|ELONGATION factor 1-alpha|Methanoregula boonei (strain DSM 21154

Query: 2 CHDNQTCC 9
CH QT C
Sbjct: 341 CHTTQTAC 348


>sp|EF1A_METHJ|ELONGATION factor 1-alpha|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 CHDNQTCC 9
CH QT C
Sbjct: 341 CHTAQTAC 348


>sp|EF1A_METBU|ELONGATION factor 1-alpha|Methanococcoides burtonii (strain DSM 6242

Query: 2 CHDNQTCC 9
CH QT C
Sbjct: 340 CHTAQTAC 347


>sp|PURQ_METJA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Methanocaldococcus jannaschii (strain ATCC

Query: 2 CHDNQTC 8
C++NQ C
Sbjct: 190 CNENQNC 196


>sp|Y843_ARCFU|UNCHARACTERIZED protein AF_0843|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 FCHDNQTC 8
FC D Q+C
Sbjct: 6 FCLDLQSC 13


>sp|MFNA_METVS|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcus vannielii

Query: 3 HDNQTCCR 10
H N+TC +
Sbjct: 334 HKNETCAK 341


>sp|EF1A_METKA|ELONGATION factor 1-alpha|Methanopyrus kandleri (strain AV19 /

Query: 2 CHDNQTCCR 10
CH Q C+
Sbjct: 341 CHTAQVACK 349


>sp|TOP1_PYRHO|DNA topoisomerase 1|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 NQTCC 9
N+TCC
Sbjct: 650 NKTCC 654


>sp|TOP1_PYRFU|DNA topoisomerase 1|Pyrococcus furiosus (strain ATCC 43587

Query: 5 NQTCC 9
N+TCC
Sbjct: 1022 NKTCC 1026


>sp|TOP1_PYRAB|DNA topoisomerase 1|Pyrococcus abyssi (strain GE5 /

Query: 5 NQTCC 9
N+TCC
Sbjct: 655 NKTCC 659


>sp|BGAL_HALL2|BETA-GALACTOSIDASE BgaH|Haloferax lucentense (strain DSM 14919

Query: 2 CHDNQTC 8
CH+ TC
Sbjct: 145 CHETVTC 151


>sp|CCA_THEVO|CCA-ADDING enzyme|Thermoplasma volcanium (strain ATCC 51530

Query: 3 HDNQTCCR 10
HD TC R
Sbjct: 266 HDRGTCIR 273


>sp|Y907_METJA|UNCHARACTERIZED protein MJ0907|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FCHDNQTCC 9
+C+DN + C
Sbjct: 74 YCNDNYSNC 82


>sp|Y1942_ARCFU|UNCHARACTERIZED protein AF_1942|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 FCHDNQTCC 9
FCH+ +T C
Sbjct: 113 FCHNFETSC 121




107|Sequence|531|540|QTCCRDNRQG

>sp|DNLI_METS5|DNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 1 QTCCRDNRQG 10
TCCR + G
Sbjct: 543 HTCCRGEKGG 552


>sp|QUEC_METM6|7-CYANO-7-DEAZAGUANINE synthase|Methanococcus maripaludis (strain C6 /

Query: 2 TCCRDNRQ 9
+C RDNR+
Sbjct: 194 SCYRDNRE 201


>sp|AATA_METJA|A-TYPE ATP synthase subunit A|Methanocaldococcus jannaschii (strain ATCC

Query: 2 TCCRDNRQG 10
T +DNRQG
Sbjct: 376 TLGKDNRQG 384


>sp|DNLI_SULTO|DNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 QTCCRD 6
TCC+D
Sbjct: 542 HTCCKD 547


>sp|DNLI_ACIAM|DNA ligase|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 1 QTCCRD 6
TCC+D
Sbjct: 543 HTCCKD 548


>sp|DNLI_SACSH|DNA ligase|Saccharolobus shibatae (strain ATCC 51178

Query: 1 QTCCRD 6
TCC+D
Sbjct: 542 HTCCQD 547


>sp|DNLI_SACS2|DNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 QTCCRD 6
TCC+D
Sbjct: 542 HTCCQD 547


>sp|DNLI_SACI7|DNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 QTCCRD 6
TCC+D
Sbjct: 542 HTCCQD 547


>sp|DNLI_SACI6|DNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 QTCCRD 6
TCC+D
Sbjct: 542 HTCCQD 547


>sp|DNLI_SACI4|DNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 QTCCRD 6
TCC+D
Sbjct: 542 HTCCQD 547


>sp|DNLI_SACI3|DNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 QTCCRD 6
TCC+D
Sbjct: 542 HTCCQD 547


>sp|DNLI_SACI2|DNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 QTCCRD 6
TCC+D
Sbjct: 542 HTCCQD 547


>sp|DNLI_SACI1|DNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 QTCCRD 6
TCC+D
Sbjct: 542 HTCCQD 547




108|Sequence|536|545|DNRQGWACCP

>sp|AATA_METJA|A-TYPE ATP synthase subunit A|Methanocaldococcus jannaschii (strain ATCC

Query: 1 DNRQGWAC 8
DNRQG+ C
Sbjct: 380 DNRQGFVC 387


>sp|MSRA_METM6|PEPTIDE methionine sulfoxide reductase MsrA|Methanococcus maripaludis

Query: 2 NRQGW 6
NRQGW
Sbjct: 86 NRQGW 90


>sp|MSRA_METM5|PEPTIDE methionine sulfoxide reductase MsrA|Methanococcus maripaludis

Query: 2 NRQGW 6
NRQGW
Sbjct: 86 NRQGW 90


>sp|MSRA_METM7|PEPTIDE methionine sulfoxide reductase MsrA|Methanococcus maripaludis

Query: 2 NRQGW 6
NRQGW
Sbjct: 86 NRQGW 90


>sp|RRP4_SACS2|EXOSOME complex component Rrp4|Saccharolobus solfataricus (strain ATCC

Query: 1 DNRQGWACCP 10
+N + WA CP
Sbjct: 190 NNGRIWATCP 199


>sp|GATE_METKA|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanopyrus kandleri (strain AV19 /

Query: 5 GWACCP 10
GW CP
Sbjct: 328 GWELCP 333


>sp|MSRA_METMP|PEPTIDE methionine sulfoxide reductase MsrA|Methanococcus maripaludis

Query: 2 NRQGW 6
N+QGW
Sbjct: 86 NKQGW 90


>sp|Y1137_METTH|UNCHARACTERIZED protein MTH_1137|Methanothermobacter thermautotrophicus (strain

Query: 6 WACCP 10
WAC P
Sbjct: 382 WACLP 386


>sp|PRIL_METKA|DNA primase large subunit PriL|Methanopyrus kandleri (strain AV19 /

Query: 1 DNRQGWACCP 10
D + W CP
Sbjct: 376 DKMKAWGLCP 385


>sp|MTMB2_METAC|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina acetivorans (strain ATCC

Query: 5 GWAC 8
GWAC
Sbjct: 316 GWAC 319


>sp|MTMB_METMA|MONOMETHYLAMINE methyltransferase MtmB|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 GWAC 8
GWAC
Sbjct: 316 GWAC 319


>sp|MTMB1_METAC|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina acetivorans (strain ATCC

Query: 5 GWAC 8
GWAC
Sbjct: 316 GWAC 319


>sp|MTMB1_METBA|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina barkeri

Query: 5 GWAC 8
GWAC
Sbjct: 316 GWAC 319


>sp|MTMB2_METBF|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina barkeri (strain Fusaro /

Query: 5 GWAC 8
GWAC
Sbjct: 316 GWAC 319


>sp|MTMB1_METBF|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina barkeri (strain Fusaro /

Query: 5 GWAC 8
GWAC
Sbjct: 316 GWAC 319


>sp|METXA_METZD|HOMOSERINE O-acetyltransferase|Methanosalsum zhilinae (strain DSM 4017

Query: 1 DNRQGW 6
DN+ GW
Sbjct: 68 DNKPGW 73


>sp|MTMB2_METBA|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina barkeri

Query: 5 GWAC 8
GWAC
Sbjct: 316 GWAC 319


>sp|MTMB3_METBF|MONOMETHYLAMINE methyltransferase MtmB3|Methanosarcina barkeri (strain Fusaro /

Query: 5 GWAC 8
GWAC
Sbjct: 316 GWAC 319




109|Sequence|541|550|WACCPYRQGV

>sp|RRP4_SACS2|EXOSOME complex component Rrp4|Saccharolobus solfataricus (strain ATCC

Query: 1 WACCPYR 7
WA CP R
Sbjct: 195 WATCPSR 201


>sp|RL13_SULAC|LARGE ribosomal subunit protein uL13|Sulfolobus acidocaldarius (strain

Query: 5 PYRQGV 10
PYRQG+
Sbjct: 67 PYRQGI 72


>sp|SYT_METAR|THREONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 ACCPYR 7
AC PYR
Sbjct: 618 ACLPYR 623


>sp|RGYR2_SACS2|REVERSE gyrase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 ACCPYRQGV 10
AC PY G+
Sbjct: 30 ACLPYINGI 38


>sp|NADA_METMA|QUINOLINATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 WACCP 5
+ACCP
Sbjct: 256 FACCP 260


>sp|NADA1_METAC|QUINOLINATE synthase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 WACCP 5
+ACCP
Sbjct: 256 FACCP 260


>sp|URE3_NATPD|UREASE subunit gamma|Natronomonas pharaonis (strain ATCC 35678

Query: 1 WACCPYRQGV 10
WAC R+G+
Sbjct: 42 WACERAREGM 51


>sp|SYS2_METBF|TYPE-2 serine--tRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 ACCPYR 7
AC PYR
Sbjct: 419 ACLPYR 424


>sp|NADA_METBF|QUINOLINATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 WACCP 5
+ACCP
Sbjct: 256 FACCP 260


>sp|Y3004_HALS3|UPF0179 protein OE_3004R|Halobacterium salinarum (strain ATCC 29341

Query: 4 CPYRQ 8
CPYRQ
Sbjct: 29 CPYRQ 33


>sp|Y1401_HALSA|UPF0179 protein VNG_1401C|Halobacterium salinarum (strain ATCC 700922

Query: 4 CPYRQ 8
CPYRQ
Sbjct: 29 CPYRQ 33




110|Sequence|546|555|YRQGVCCADR

>sp|PYRK_METMA|PROBABLE dihydroorotate dehydrogenase B (NAD(+)),|Methanosarcina mazei

Query: 4 GVCCADR 10
G CC DR
Sbjct: 217 GACCIDR 223


>sp|HPRT_METHJ|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanospirillum hungatei JF-1 (strain

Query: 1 YRQGVCCADR 10
Y G+C DR
Sbjct: 108 YINGICTGDR 117


>sp|HPRT_METAR|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanocella arvoryzae (strain DSM 22066

Query: 1 YRQGVCCADR 10
Y G+C DR
Sbjct: 107 YLNGICKGDR 116


>sp|PYRK_METBF|PROBABLE dihydroorotate dehydrogenase B (NAD(+)),|Methanosarcina barkeri

Query: 4 GVCCADR 10
G CC D+
Sbjct: 217 GACCIDK 223


>sp|ACDA_METTH|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanothermobacter

Query: 4 GVCCA 8
G+CCA
Sbjct: 275 GICCA 279




111|Sequence|551|560|CCADRRHCCP

>sp|Y897_ARCFU|UNCHARACTERIZED protein AF_0897|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 DRRHC 8
D+RHC
Sbjct: 39 DKRHC 43


>sp|Y045_METMA|PUTATIVE ankyrin repeat protein MM_0045|Methanosarcina mazei (strain ATCC

Query: 1 CCADRRH 7
C ADR H
Sbjct: 206 CAADRAH 212




112|Sequence|556|565|RHCCPAGFRC

>sp|ILVD_HALMA|DIHYDROXY-ACID dehydratase|Haloarcula marismortui (strain ATCC 43049

Query: 1 RHCCPAGFRC 10
RH CP C
Sbjct: 197 RHACPGAGSC 206


>sp|RAD50_ARCFU|DNA double-strand break repair Rad50|Archaeoglobus fulgidus (strain

Query: 1 RHCCPA 6
RH CPA
Sbjct: 112 RHLCPA 117


>sp|PYRI_METLZ|ASPARTATE carbamoyltransferase regulatory chain|Methanocorpusculum labreanum

Query: 5 PAGFRC 10
P GFRC
Sbjct: 133 PRGFRC 138


>sp|OTC_METKA|ORNITHINE carbamoyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 2 HCCPAGFRC 10
H P G+ C
Sbjct: 185 HAVPEGYEC 193


>sp|LIPA_PYRAR|LIPOYL synthase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 4 CPAGFRC 10
CP FRC
Sbjct: 39 CPNVFRC 45


>sp|SYT_THESM|THREONINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 2 HCCPAG 7
HC P+G
Sbjct: 474 HCSPSG 479


>sp|SYT_THEON|THREONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 2 HCCPAG 7
HC P+G
Sbjct: 476 HCSPSG 481


>sp|SYT_THEKO|THREONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 HCCPAG 7
HC P+G
Sbjct: 475 HCSPSG 480


>sp|SYT_THEGJ|THREONINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 2 HCCPAG 7
HC P+G
Sbjct: 475 HCSPSG 480


>sp|SYT_PYRHO|THREONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 HCCPAG 7
HC P+G
Sbjct: 474 HCSPSG 479


>sp|SYT_PYRFU|THREONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 HCCPAG 7
HC P+G
Sbjct: 474 HCSPSG 479


>sp|SYT_PYRAB|THREONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 HCCPAG 7
HC P+G
Sbjct: 474 HCSPSG 479


>sp|SYT_METTP|THREONINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 HCCPAG 7
HC P+G
Sbjct: 469 HCSPSG 474


>sp|SYT_METMA|THREONINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 HCCPAG 7
HC P+G
Sbjct: 482 HCSPSG 487


>sp|SYT_METBU|THREONINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 HCCPAG 7
HC P+G
Sbjct: 483 HCSPSG 488


>sp|SYT_METBF|THREONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 HCCPAG 7
HC P+G
Sbjct: 483 HCSPSG 488


>sp|SYT_METAR|THREONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 HCCPAG 7
HC P+G
Sbjct: 485 HCSPSG 490


>sp|SYT_METAC|THREONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 HCCPAG 7
HC P+G
Sbjct: 483 HCSPSG 488


>sp|TRM1_METBF|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosarcina barkeri

Query: 2 HCCPAGFR 9
HC GFR
Sbjct: 250 HCPKCGFR 257


>sp|Y661_METJA|UNCHARACTERIZED protein MJ0661|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 HCCPAGFRC 10
HC GF C
Sbjct: 27 HCIKCGFCC 35




113|Sequence|561|570|AGFRCAARGT

>sp|NIFH2_METTL|NITROGENASE iron protein 2|Methanothermococcus thermolithotrophicus

Query: 2 GFRCAARG 9
G+ CA RG
Sbjct: 103 GYGCAGRG 110


>sp|DPOL_METJA|DNA polymerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 FRCAARGT 10
FRC +GT
Sbjct: 424 FRCHPKGT 431


>sp|TIAS_METMA|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Methanosarcina mazei (strain

Query: 2 GFRCAARGT 10
GFRC GT
Sbjct: 373 GFRCKKCGT 381


>sp|TIAS_METAC|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Methanosarcina acetivorans

Query: 2 GFRCAARGT 10
GFRC GT
Sbjct: 373 GFRCKKCGT 381


>sp|AGLUS_ARCFU|ARCHAEAL glutamate synthase [NADPH]|Archaeoglobus fulgidus (strain ATCC

Query: 1 AGFRCAA 7
GFRC+A
Sbjct: 392 GGFRCSA 398


>sp|DEOC_AERPE|DEOXYRIBOSE-PHOSPHATE aldolase|Aeropyrum pernix (strain ATCC 700893

Query: 2 GFRCA 6
GFRCA
Sbjct: 50 GFRCA 54




114|Sequence|566|575|AARGTKCLRR

>sp|LEU3_METJA|3-ISOPROPYLMALATE/3-METHYLMALATE dehydrogenase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AARGTKCLR 9
A +G KCLR
Sbjct: 95 AYKGVKCLR 103




115|Sequence|571|580|KCLRREAPRW

>sp|SUCC_IGNH4|SUCCINATE--COA ligase [ADP-forming] subunit beta|Ignicoccus hospitalis (strain

Query: 3 LRREAPRW 10
L +EA RW
Sbjct: 231 LEKEAARW 238


>sp|PUR1_PYRAB|AMIDOPHOSPHORIBOSYLTRANSFERASE abyssi (strain GE5 /

Query: 2 CLRREAPRW 10
CL E P W
Sbjct: 435 CLTGEYPEW 443


>sp|SAHH_PYRHO|ADENOSYLHOMOCYSTEINASE horikoshii (strain ATCC 700860

Query: 1 KCLRRE 6
KC+RRE
Sbjct: 277 KCIRRE 282


>sp|SAHH_PYRFU|ADENOSYLHOMOCYSTEINASE furiosus (strain ATCC 43587

Query: 1 KCLRRE 6
KC+RRE
Sbjct: 277 KCIRRE 282


>sp|SAHH_PYRAB|ADENOSYLHOMOCYSTEINASE abyssi (strain GE5 /

Query: 1 KCLRRE 6
KC+RRE
Sbjct: 278 KCIRRE 283


>sp|IORA_PYRHO|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus horikoshii (strain ATCC

Query: 3 LRREAPRW 10
LRRE +W
Sbjct: 577 LRREGKQW 584


>sp|DPOL_ARCFU|DNA polymerase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 LRREAPRW 10
LR+ A RW
Sbjct: 236 LRKRAERW 243


>sp|CARB_PYRAE|CARBAMOYL phosphate synthase large chain|Pyrobaculum aerophilum (strain ATCC

Query: 1 KCLRREAPRW 10
KC++ P W
Sbjct: 418 KCIKDYVPYW 427


>sp|RS12_METVS|SMALL ribosomal subunit protein uS12|Methanococcus vannielii (strain

Query: 3 LRREAPRW 10
L+R+A RW
Sbjct: 18 LKRKATRW 25


>sp|RS15_METMJ|SMALL ribosomal subunit protein uS15|Methanoculleus marisnigri (strain

Query: 4 RREAPRW 10
R+EAP W
Sbjct: 19 RKEAPEW 25


>sp|CMR1A_PYRFU|CRISPR system Cmr subunit Cmr1-1|Pyrococcus furiosus (strain ATCC 43587

Query: 1 KCLRREAPRW 10
K LRR +P W
Sbjct: 270 KDLRRASPLW 279


>sp|RS12_METMP|SMALL ribosomal subunit protein uS12|Methanococcus maripaludis (strain

Query: 3 LRREAPRW 10
L+R+A RW
Sbjct: 18 LKRKASRW 25


>sp|RS12_METM5|SMALL ribosomal subunit protein uS12|Methanococcus maripaludis (strain

Query: 3 LRREAPRW 10
L+R+A RW
Sbjct: 18 LKRKASRW 25


>sp|GCST_AERPE|PROBABLE aminomethyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 1 KCLRREAPRW 10
+ RRE RW
Sbjct: 280 RACRREGVRW 289


>sp|RGYRB_METKA|REVERSE gyrase subunit B|Methanopyrus kandleri (strain AV19 /

Query: 1 KCLRREAPRW 10
+ LRR A RW
Sbjct: 960 QILRRVADRW 969


>sp|RS12_METM7|SMALL ribosomal subunit protein uS12|Methanococcus maripaludis (strain

Query: 3 LRREAPRW 10
L+R A RW
Sbjct: 18 LKRRASRW 25




116|Sequence|576|585|EAPRWDAPLR

>sp|SYC_META3|CYSTEINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 EAPRWDAP 8
+ P+WD+P
Sbjct: 188 DEPKWDSP 195


>sp|SYC_PYRFU|CYSTEINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 PRWDAP 8
P+WD+P
Sbjct: 191 PKWDSP 196


>sp|Y1226_METJA|PUTATIVE cation-transporting ATPase MJ1226|Methanocaldococcus jannaschii

Query: 1 EAPRWDAPL 9
+ PR DAPL
Sbjct: 457 DPPREDAPL 465


>sp|SYC_PYRAB|CYSTEINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 3 PRWDAP 8
P+WD+P
Sbjct: 192 PKWDSP 197


>sp|Y4618_METAC|UPF0313 protein MA_4618|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 PRWDAP 8
PRWD P
Sbjct: 180 PRWDNP 185


>sp|SYC_STAMF|CYSTEINE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 3 PRWDAP 8
P WDAP
Sbjct: 192 PHWDAP 197


>sp|GCSPB_STAMF|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Staphylothermus

Query: 4 RWDAPL 9
RWD PL
Sbjct: 6 RWDEPL 11


>sp|DP2L_NATPD|DNA polymerase II large subunit|Natronomonas pharaonis (strain ATCC

Query: 2 APRWDAPLR 10
A R+DAPL
Sbjct: 500 AERYDAPLH 508


>sp|DEOC_AERPE|DEOXYRIBOSE-PHOSPHATE aldolase|Aeropyrum pernix (strain ATCC 700893

Query: 1 EAPRWD 6
EAP WD
Sbjct: 142 EAPLWD 147


>sp|GCSPB_PYRHO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Pyrococcus

Query: 4 RWDAPL 9
RWD PL
Sbjct: 6 RWDEPL 11


>sp|PGP_HALLT|PHOSPHOGLYCOLATE phosphatase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 PRWDAPL 9
P WDAP+
Sbjct: 29 PDWDAPV 35


>sp|SYC_THEAC|CYSTEINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 PRWDAP 8
P WD+P
Sbjct: 190 PYWDSP 195


>sp|SYA_STAMF|ALANINE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 1 EAPRWDA 7
E P WDA
Sbjct: 695 EIPGWDA 701


>sp|REG5_PYRHO|UNCHARACTERIZED HTH-type transcriptional regulator PH1055|Pyrococcus horikoshii

Query: 1 EAPRWDA 7
E P WDA
Sbjct: 150 EVPFWDA 156


>sp|MCAL_HALMA|L-MALYL-COA/BETA-METHYLMALYL-COA lyase|Haloarcula marismortui (strain ATCC 43049

Query: 1 EAPRWDAPL 9
E PRWD L
Sbjct: 190 ERPRWDGLL 198


>sp|Y1287_METMA|UPF0313 protein MM_1287|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 PRWDAP 8
PRW+ P
Sbjct: 52 PRWENP 57


>sp|GLPK_HALWD|GLYCEROL kinase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 APRWDAPLR 10
AP WD R
Sbjct: 363 APHWDGRAR 371




117|Sequence|581|593|DAPLRDPALRQLL

>sp|MCRB_METTH|METHYL-COENZYME M reductase I subunit|Methanothermobacter thermautotrophicus

Query: 2 APLRDPALRQLL 13
+PLR+PA++ ++
Sbjct: 28 SPLRNPAIKSIV 39


>sp|MCRB_METTM|METHYL-COENZYME M reductase I subunit|Methanothermobacter marburgensis (strain

Query: 2 APLRDPALRQLL 13
+PLR+PA++ ++
Sbjct: 28 SPLRNPAIKSIV 39


>sp|TRI_SACS2|TRICORN protease homolog|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 APLRDPALR 10
+PLRDP ++
Sbjct: 805 SPLRDPGVQ 813


>sp|AROC_PYRAE|CHORISMATE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 DAPLRDPAL 9
D PLRDP +
Sbjct: 360 DRPLRDPVV 368


>sp|TRPD_PYRFU|ANTHRANILATE phosphoribosyltransferase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 APLRDPALRQLL 13
AP+ PAL++++
Sbjct: 143 APMYHPALKRIM 154


>sp|TRIC_SULTO|PUTATIVE Tricorn-like protease C-terminal subunit|Sulfurisphaera tokodaii

Query: 2 APLRDPALR 10
+PLRDP ++
Sbjct: 588 SPLRDPGVQ 596


>sp|TRPD_PYRAB|ANTHRANILATE phosphoribosyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 2 APLRDPALRQLL 13
AP+ PAL++++
Sbjct: 143 APMYHPALKRIM 154


>sp|MTAD2_ARCFU|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 DAPLRDPA 8
+AP+ DPA
Sbjct: 362 NAPMHDPA 369


>sp|RRP4_METAC|EXOSOME complex component Rrp4|Methanosarcina acetivorans (strain ATCC

Query: 4 LRDPALRQL 12
LRDP+L +L
Sbjct: 127 LRDPSLHKL 135


>sp|CYNS_SULTO|CYANATE hydratase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 DAPLRDPA 8
DAP+R PA
Sbjct: 70 DAPMRTPA 77


>sp|CBIC_METTH|COBALT-PRECORRIN-8 methylmutase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 4 LRDPALRQL 12
+R+PA+R+L
Sbjct: 94 IREPAVREL 102


>sp|RS7_CALMQ|SMALL ribosomal subunit protein uS7|Caldivirga maquilingensis (strain

Query: 1 DAPLRDPALRQLL 13
D +RDP LR+ +
Sbjct: 50 DVVIRDPGLRRYM 62


>sp|Y987_METTH|UNCHARACTERIZED protein MTH_987|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 DAPLRDPAL 9
D LRDPAL
Sbjct: 238 DTVLRDPAL 246


>sp|RS7_PYRFU|SMALL ribosomal subunit protein uS7|Pyrococcus furiosus (strain ATCC

Query: 1 DAPLRDPALR 10
D +RDP+L+
Sbjct: 25 DVEVRDPSLK 34


>sp|RS7_PYRAB|SMALL ribosomal subunit protein uS7|Pyrococcus abyssi (strain GE5 /

Query: 1 DAPLRDPALR 10
D +RDP+L+
Sbjct: 25 DVEVRDPSLK 34


>sp|RS7_PYRAE|SMALL ribosomal subunit protein uS7|Pyrobaculum aerophilum (strain ATCC

Query: 1 DAPLRDPALRQLL 13
D +RDP LR+ +
Sbjct: 49 DVVVRDPGLRRYI 61


>sp|AROC_PYRAR|CHORISMATE synthase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 DAPLRDPAL 9
D PL+DP +
Sbjct: 360 DRPLKDPVV 368


>sp|AGLM_HALVD|UDP-GLUCOSE 6-dehydrogenase AglM|Haloferax volcanii (strain ATCC 29605

Query: 2 APLRDPALRQLL 13
AP+ +P L +L+
Sbjct: 44 APIHEPGLAELV 55


>sp|ASPD_METTH|L-ASPARTATE dehydrogenase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 4 LRDPALRQLL 13
L DP LR++L
Sbjct: 98 LMDPELREML 107






THE END