ATX2_HUMAN Blast Output
Archaea
1|Sequence|1|10|MRSAAAAPRS

***** No hits found ******


2|Sequence|6|15|AAPRSPAVAT

>sp|Y2029_AERPE|UPF0284 protein APE_2029.1|Aeropyrum pernix (strain ATCC 700893

Query: 3 PRSPAVAT 10
PRS AVAT
Sbjct: 268 PRSTAVAT 275


>sp|TKSP_THEKO|SUBTILISIN-LIKE serine protease|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 AAPRSPAV 8
AAP+ PAV
Sbjct: 23 AAPQKPAV 30




3|Sequence|11|20|PAVATESRRF

>sp|NEP1_PYRNV|RIBOSOMAL RNA small subunit methyltransferase|Pyrobaculum neutrophilum

Query: 1 PAVATESRR 9
PAVA+++RR
Sbjct: 21 PAVASDARR 29


>sp|Y1861_PYRAE|PUTATIVE ankyrin repeat protein PAE1861|Pyrobaculum aerophilum (strain

Query: 3 VATESRRF 10
+AT+SR+F
Sbjct: 74 IATQSRKF 81


>sp|RFRNP_HYPBU|RNA-FREE ribonuclease P|Hyperthermus butylicus (strain DSM 5456

Query: 1 PAVATESRRF 10
P V E+RRF
Sbjct: 60 PTVYEEARRF 69


>sp|RKD4_PYRCJ|ARCADIN-4 calidifontis (strain DSM 21063

Query: 3 VATESRRF 10
VAT+SR F
Sbjct: 758 VATQSREF 765




4|Sequence|16|25|ESRRFAAARW

>sp|Y2164_ARCFU|UNCHARACTERIZED protein AF_2164|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 SRRFAAARW 10
SRR AA W
Sbjct: 106 SRRHLAATW 114




5|Sequence|21|30|AAARWPGWRS

>sp|CDC62_HALSA|ORC1-TYPE DNA replication protein 2|Halobacterium salinarum (strain ATCC

Query: 5 WPGW 8
WPGW
Sbjct: 246 WPGW 249


>sp|Y1782_THEKO|UNCHARACTERIZED serpin-like protein TK1782|Thermococcus kodakarensis (strain ATCC

Query: 3 ARWPGWR 9
ARW G+R
Sbjct: 119 ARWTGFR 125


>sp|Y2298_ARCFU|UNCHARACTERIZED DNA primase small subunit-like|Archaeoglobus fulgidus (strain

Query: 4 RWPGWR 9
+W GWR
Sbjct: 32 KWLGWR 37


>sp|IF2P_META3|PROBABLE translation initiation factor IF-2|Methanococcus aeolicus (strain

Query: 4 RWPGWRS 10
R PGW S
Sbjct: 134 RLPGWSS 140


>sp|DNLI_SULZI|DNA ligase|Sulfophobococcus zilligii

Query: 5 WPGWR 9
WP W+
Sbjct: 53 WPDWK 57


>sp|DNLI_STAMF|DNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 5 WPGWR 9
WP W+
Sbjct: 50 WPDWK 54


>sp|GAD_PICTO|D-GLUCONATE/D-GALACTONATE dehydratase|Picrophilus torridus (strain ATCC 700027

Query: 5 WPGWR 9
WP W+
Sbjct: 331 WPDWK 335


>sp|DP2L_HALSA|DNA polymerase II large subunit|Halobacterium salinarum (strain ATCC

Query: 1 AAARWP 6
AAA WP
Sbjct: 589 AAAEWP 594


>sp|TIAS_STAMF|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Staphylothermus marinus (strain

Query: 4 RWPGWRS 10
+W GW++
Sbjct: 114 KWIGWKA 120


>sp|COBD_AERPE|PROBABLE cobalamin biosynthesis protein CobD|Aeropyrum pernix (strain ATCC

Query: 3 ARWPGWR 9
A +PGWR
Sbjct: 283 APYPGWR 289


>sp|PIMT_AERPE|PROTEIN-L-ISOASPARTATE O-methyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 4 RWPGWRS 10
RWPG R
Sbjct: 24 RWPGLRD 30


>sp|DNLI_HYPBU|DNA ligase|Hyperthermus butylicus (strain DSM 5456

Query: 5 WPGWR 9
WP W+
Sbjct: 52 WPDWK 56




6|Sequence|26|35|PGWRSLQRPA

>sp|ILVD_METHJ|DIHYDROXY-ACID dehydratase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 GWRSLQRP 9
GW+ L+RP
Sbjct: 518 GWKPLKRP 525


>sp|G3P_PYRIL|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 PGWRSLQR 8
P WRS+++
Sbjct: 322 PKWRSIEK 329


>sp|G3P_PYRAE|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PGWRSLQR 8
P WRS+++
Sbjct: 322 PKWRSIEK 329


>sp|NRDR_NATPD|TRANSCRIPTIONAL repressor NrdR|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PGWRSLQ 7
P W+SLQ
Sbjct: 44 PEWKSLQ 50


>sp|G3P_PYRNV|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 PGWRSLQR 8
P WRS+++
Sbjct: 322 PKWRSIEK 329


>sp|Y1312_METJA|UPF0026 protein MJ1312|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 WRSLQRP 9
WR + RP
Sbjct: 138 WREINRP 144


>sp|GFCR_THEVO|TRANSCRIPTIONAL regulator GfcR|Thermoplasma volcanium (strain ATCC 51530

Query: 2 GWRSL 6
GWRSL
Sbjct: 55 GWRSL 59


>sp|RL10E_ARCFU|LARGE ribosomal subunit protein uL16|Archaeoglobus fulgidus (strain

Query: 3 WRSLQRP 9
WR L+RP
Sbjct: 9 WRRLERP 15




7|Sequence|31|40|LQRPARRSGR

>sp|CHEF2_HALS3|TAXIS protein CheF2|Halobacterium salinarum (strain ATCC 29341

Query: 2 QRPARRSGR 10
+ PARR GR
Sbjct: 113 KHPARRGGR 121


>sp|SYFB_THEAC|PHENYLALANINE--TRNA ligase beta subunit|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 LQRPARRS 8
+ RPARRS
Sbjct: 273 IMRPARRS 280


>sp|NFI_AERPE|ENDONUCLEASE V|Aeropyrum pernix (strain ATCC 700893

Query: 1 LQRPARRSG 9
L+RP RR+G
Sbjct: 243 LERPLRRAG 251


>sp|BRIX_METKA|PROBABLE Brix domain-containing ribosomal biogenesis|Methanopyrus kandleri

Query: 2 QRPARRS 8
QRPARR+
Sbjct: 10 QRPARRT 16


>sp|CDC62_METTH|ORC1-TYPE DNA replication protein 2|Methanothermobacter thermautotrophicus

Query: 3 RPARRSGR 10
RPA R+GR
Sbjct: 50 RPALRNGR 57




8|Sequence|36|45|RRSGRGGGGA

>sp|Y1185_METJA|UNCHARACTERIZED protein MJ1185|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 SGRGGGGA 10
+ RGGGG+
Sbjct: 179 AARGGGGS 186


>sp|THIC2_METST|PHOSPHOMETHYLPYRIMIDINE synthase 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 RRSGRGGG 8
+R GR GG
Sbjct: 174 KRQGRNGG 181


>sp|MVK_METJA|MEVALONATE kinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 SGRGGGG 9
+G GGGG
Sbjct: 274 TGAGGGG 280


>sp|RL2_HALWD|LARGE ribosomal subunit protein uL2|Haloquadratum walsbyi (strain DSM

Query: 1 RRSGRGGGGA 10
+R+GRGG G+
Sbjct: 232 KRTGRGGNGS 241


>sp|RPIA_PICTO|RIBOSE-5-PHOSPHATE isomerase A|Picrophilus torridus (strain ATCC 700027

Query: 5 RGGGGA 10
+GGGGA
Sbjct: 93 KGGGGA 98


>sp|HTR8_HALS3|TRANSDUCER protein Htr8|Halobacterium salinarum (strain ATCC 29341

Query: 3 SGRGGGGA 10
S RGGG A
Sbjct: 4 SARGGGSA 11




9|Sequence|41|50|GGGGAAPGPY

>sp|AATA_NANEQ|A-TYPE ATP synthase subunit A|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 216 GGSAAVPGPF 225


>sp|AATA_THEVO|A-TYPE ATP synthase subunit A|Thermoplasma volcanium (strain ATCC 51530

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 222 GGTAAVPGPF 231


>sp|AATA_THEAC|A-TYPE ATP synthase subunit A|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 222 GGTAAVPGPF 231


>sp|AATA_PYRNV|A-TYPE ATP synthase subunit A|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 229 GGAAAVPGPF 238


>sp|AATA_PYRAR|A-TYPE ATP synthase subunit A|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 229 GGAAAVPGPF 238


>sp|AATA_META3|A-TYPE ATP synthase subunit A|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 226 GGASAIPGPF 235


>sp|AATA_METM5|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C5 /

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 225 GGAAAIPGPF 234


>sp|AATA_METS3|A-TYPE ATP synthase subunit A|Methanobrevibacter smithii (strain ATCC

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 226 GGAAAIPGPF 235


>sp|AATA_METVS|A-TYPE ATP synthase subunit A|Methanococcus vannielii (strain ATCC 35089

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 225 GGASAIPGPF 234


>sp|AATA_METM7|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C7 /

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 225 GGASAIPGPF 234


>sp|AATA_METM6|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C6 /

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 225 GGASAIPGPF 234


>sp|AATA_METMP|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain DSM 14266

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 225 GGASAIPGPF 234


>sp|Y476_PYRFU|PROTEIN PF0476|Pyrococcus furiosus (strain ATCC 43587

Query: 4 GAAPGPY 10
GAAPG Y
Sbjct: 140 GAAPGAY 146


>sp|AATA_PYRCJ|A-TYPE ATP synthase subunit A|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 229 GGTAAVPGPF 238


>sp|AATA_PYRAE|A-TYPE ATP synthase subunit A|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GGGGAAPGPY 10
GG A PGP+
Sbjct: 229 GGTAAVPGPF 238


>sp|AOX1_AERPE|HEME-COPPER oxidase subunit I+III|Aeropyrum pernix (strain ATCC 700893

Query: 2 GGGAAPGPY 10
GG AAP P+
Sbjct: 485 GGSAAPNPW 493


>sp|Y1472_THEKO|PROTEIN TK1472|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 GGAAPGPY 10
GGAAPG +
Sbjct: 139 GGAAPGAF 146


>sp|RL11_METTH|LARGE ribosomal subunit protein uL11|Methanothermobacter

Query: 2 GGGAAPGP 9
GG A PGP
Sbjct: 12 GGKATPGP 19


>sp|Y439_PYRHO|PROTEIN PH0439|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 GAAPGPY 10
GAAPG Y
Sbjct: 143 GAAPGAY 149


>sp|RNZ_IGNH4|RIBONUCLEASE Z|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 GGGGAAPGP 9
G G A+P P
Sbjct: 10 GSGAASPAP 18


>sp|RL11_SULAC|LARGE ribosomal subunit protein uL11|Sulfolobus acidocaldarius (strain

Query: 2 GGGAAPGP 9
GG A PGP
Sbjct: 12 GGSAKPGP 19


>sp|RADB_THEKO|DNA repair and recombination protein|Thermococcus kodakarensis

Query: 2 GGGAAPG 8
GGG APG
Sbjct: 14 GGGFAPG 20


>sp|PRIS_SACI4|DNA primase small subunit PriS|Saccharolobus islandicus (strain M.14.25

Query: 1 GGGGAAPG 8
GGG APG
Sbjct: 213 GGGENAPG 220


>sp|PRIS_SACI3|DNA primase small subunit PriS|Saccharolobus islandicus (strain

Query: 1 GGGGAAPG 8
GGG APG
Sbjct: 213 GGGENAPG 220


>sp|PRIS_SACI6|DNA primase small subunit PriS|Saccharolobus islandicus (strain M.16.4

Query: 1 GGGGAAPG 8
GGG APG
Sbjct: 213 GGGENAPG 220


>sp|AATA_THEPD|A-TYPE ATP synthase subunit A|Thermofilum pendens (strain DSM 2475

Query: 1 GGGGAAPGPY 10
GG GA PG +
Sbjct: 228 GGAGAIPGGF 237


>sp|MTD_METKA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanopyrus

Query: 1 GGGGAAPGP 9
G AAPGP
Sbjct: 72 GPNPAAPGP 80


>sp|RL11_METS3|LARGE ribosomal subunit protein uL11|Methanobrevibacter smithii (strain

Query: 2 GGGAAPGP 9
GG A PGP
Sbjct: 12 GGSATPGP 19


>sp|HUTI_THEAC|IMIDAZOLONEPROPIONASE acidophilum (strain ATCC 25905

Query: 1 GGGGAAPG 8
GGG A PG
Sbjct: 59 GGGVAVPG 66


>sp|BACH_HALVA|CRUXHALORHODOPSIN-3 vallismortis (Halobacterium vallismortis)

Query: 1 GGGGAAPG 8
G GGAAP
Sbjct: 267 GSGGAAPA 274


>sp|MTD_METJA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanocaldococcus

Query: 1 GGGGAAPGP 9
G AAPGP
Sbjct: 68 GPNPAAPGP 76


>sp|RL11_SULTO|LARGE ribosomal subunit protein uL11|Sulfurisphaera tokodaii (strain

Query: 2 GGGAAPGP 9
GG PGP
Sbjct: 12 GGNVKPGP 19


>sp|SLAA_METS5|S-LAYER protein A|Metallosphaera sedula (strain ATCC 51363

Query: 2 GGGAAPGPY 10
GG A P PY
Sbjct: 1174 GGVAVPTPY 1182


>sp|MTD_METVS|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanococcus

Query: 1 GGGGAAPGP 9
G AAPGP
Sbjct: 67 GPNPAAPGP 75


>sp|BACR1_HALWD|BACTERIORHODOPSIN-I walsbyi (strain DSM 16790

Query: 2 GGGAAPGP 9
GGG+ P P
Sbjct: 239 GGGSEPTP 246


>sp|BACR1_HALWC|BACTERIORHODOPSIN-I walsbyi (strain DSM 16854

Query: 2 GGGAAPGP 9
GGG+ P P
Sbjct: 239 GGGSEPTP 246




10|Sequence|46|55|APGPYPSAAP

>sp|DNAG_PYRAE|DNA primase DnaG|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 GPYPSA 8
GPYP+A
Sbjct: 97 GPYPAA 102


>sp|IXTPA_PICTO|DITP/XTP pyrophosphatase|Picrophilus torridus (strain ATCC 700027

Query: 2 PGPYPS 7
PGPY S
Sbjct: 75 PGPYAS 80


>sp|IXTPA_KORCO|DITP/XTP pyrophosphatase|Korarchaeum cryptofilum (strain OPF8)

Query: 2 PGPYPS 7
PGPY S
Sbjct: 74 PGPYSS 79


>sp|IXTPA_ARCFU|DITP/XTP pyrophosphatase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PGPYPS 7
PGPY S
Sbjct: 75 PGPYSS 80


>sp|MOAA_AERPE|PROBABLE GTP 3',8-cyclase|Aeropyrum pernix (strain ATCC 700893

Query: 3 GPYPSAA 9
GPYPS A
Sbjct: 274 GPYPSVA 280


>sp|YORA_PYRWO|UNCHARACTERIZED 24.7 kDa protein in|Pyrococcus woesei

Query: 2 PGPYPS 7
P PYPS
Sbjct: 174 PEPYPS 179


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 APGPYPSAA 9
P P+P+AA
Sbjct: 43 GPTPFPTAA 51


>sp|RASEA_THEKO|ARCHAEOSINE synthase subunit beta|Thermococcus kodakarensis (strain ATCC

Query: 5 YPSAAP 10
YP+AAP
Sbjct: 41 YPTAAP 46


>sp|ATGT_HALSA|TRNA-GUANINE(15) transglycosylase|Halobacterium salinarum (strain ATCC 700922

Query: 3 GPYPSA 8
GPYPSA
Sbjct: 419 GPYPSA 424


>sp|Y1303_METHJ|UPF0182 protein Mhun_1303|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 PGPYP 6
PGP+P
Sbjct: 180 PGPFP 184


>sp|MTRH_METVS|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit H|Methanococcus vannielii (strain

Query: 2 PGPYPSA 8
PG YP+A
Sbjct: 22 PGEYPTA 28


>sp|MTRH_METM5|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit H|Methanococcus maripaludis (strain

Query: 2 PGPYPSA 8
PG YP+A
Sbjct: 22 PGEYPTA 28


>sp|SYV_HALSA|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 PGPYPSA 8
P PYPS
Sbjct: 43 PPPYPSG 49


>sp|SYV_HALS3|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 2 PGPYPSA 8
P PYPS
Sbjct: 43 PPPYPSG 49


>sp|DOXA_ACIAM|THIOSULFATE dehydrogenase [quinone] small subunit|Acidianus ambivalens

Query: 1 APGPYPSAAP 10
P YP++AP
Sbjct: 68 GPDAYPASAP 77


>sp|RS4E_METS5|SMALL ribosomal subunit protein eS4|Metallosphaera sedula (strain ATCC

Query: 1 APGPYP 6
+PGP+P
Sbjct: 27 SPGPHP 32


>sp|MTRH_METMP|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit H|Methanococcus maripaludis (strain

Query: 2 PGPYPSA 8
PG YP+A
Sbjct: 22 PGEYPTA 28


>sp|KATG2_HALMA|CATALASE-PEROXIDASE 2|Haloarcula marismortui (strain ATCC 43049

Query: 3 GPYPSAAP 10
GP P AAP
Sbjct: 275 GPEPEAAP 282


>sp|RS4E_DESA1|SMALL ribosomal subunit protein eS4|Desulfurococcus amylolyticus

Query: 1 APGPYP 6
+PGP+P
Sbjct: 33 SPGPHP 38


>sp|RS4E_CALMQ|SMALL ribosomal subunit protein eS4|Caldivirga maquilingensis (strain

Query: 1 APGPYPS 7
+PGP+P+
Sbjct: 27 SPGPHPA 33


>sp|RS4E_STAMF|SMALL ribosomal subunit protein eS4|Staphylothermus marinus (strain

Query: 1 APGPYP 6
+PGP+P
Sbjct: 33 SPGPHP 38




11|Sequence|51|60|PSAAPPPPGP

>sp|DNAG_CALMQ|DNA primase DnaG|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 PSAAPPPPGP 10
PSAAP P P
Sbjct: 299 PSAAPTSPQP 308


>sp|SYA_ARCFU|ALANINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 APPPPGP 10
APPP P
Sbjct: 113 APPPANP 119


>sp|SYA_HALSA|ALANINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 3 AAPPPPGP 10
A+PPP P
Sbjct: 113 ASPPPANP 120


>sp|SYA_HALS3|ALANINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 3 AAPPPPGP 10
A+PPP P
Sbjct: 113 ASPPPANP 120


>sp|Y856_METTH|METALLOPROTEASE MTH_856|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 AAPPPPG 9
A+PPP G
Sbjct: 218 ASPPPSG 224


>sp|RSMA_METBU|PROBABLE ribosomal RNA small subunit|Methanococcoides burtonii (strain DSM

Query: 1 PSAAPPPP 8
PSA PPP
Sbjct: 170 PSAFSPPP 177


>sp|Y939_SULTO|KELCH domain-containing protein STK_09390|Sulfurisphaera tokodaii (strain

Query: 1 PSAAPPPP 8
PS+ P PP
Sbjct: 399 PSSVPNPP 406


>sp|HEM3_CALMQ|PROBABLE porphobilinogen deaminase|Caldivirga maquilingensis (strain ATCC

Query: 1 PSAAPPPPG 9
P PP PG
Sbjct: 185 PELMPPAPG 193


>sp|SYA_PYRCJ|ALANINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 AAPPPPGP 10
A PPP P
Sbjct: 112 AVPPPANP 119


>sp|LON_METBF|LON protease|Methanosarcina barkeri (strain Fusaro /

Query: 1 PSAAPPPPGP 10
PS A P GP
Sbjct: 676 PSGATPKDGP 685


>sp|AMID_SACS2|AMIDASE solfataricus (strain ATCC 35092

Query: 1 PSAAPPPP 8
P + PPPP
Sbjct: 258 PDSLPPPP 265


>sp|SYA_PYRIL|ALANINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 3 AAPPPPGP 10
A PPP P
Sbjct: 107 AVPPPANP 114


>sp|SYA_PYRAR|ALANINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 AAPPPPGP 10
A PPP P
Sbjct: 107 AVPPPANP 114


>sp|SYA_PYRAE|ALANINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 AAPPPPGP 10
A PPP P
Sbjct: 107 AVPPPANP 114




12|Sequence|56|65|PPPGPGPPPS

>sp|SYV_NANEQ|VALINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 PPPGPGP 7
PPP P P
Sbjct: 32 PPPYPAP 38


>sp|ILVC_ARCFU|KETOL-ACID reductoisomerase (NAD(P)(+))|Archaeoglobus fulgidus (strain ATCC

Query: 2 PPGPGP 7
P GPGP
Sbjct: 131 PKGPGP 136


>sp|ILVC_SULTO|KETOL-ACID reductoisomerase (NADP(+))|Sulfurisphaera tokodaii (strain DSM

Query: 2 PPGPGP 7
P GPGP
Sbjct: 130 PKGPGP 135


>sp|ILVC_SACS2|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus solfataricus (strain ATCC

Query: 2 PPGPGP 7
P GPGP
Sbjct: 133 PKGPGP 138


>sp|ILVC_SACI2|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain

Query: 2 PPGPGP 7
P GPGP
Sbjct: 133 PKGPGP 138


>sp|ILVC_SACI1|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain

Query: 2 PPGPGP 7
P GPGP
Sbjct: 133 PKGPGP 138


>sp|ILVC_SACI7|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain

Query: 2 PPGPGP 7
P GPGP
Sbjct: 133 PKGPGP 138


>sp|ILVC_SACI6|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain M.16.4

Query: 2 PPGPGP 7
P GPGP
Sbjct: 133 PKGPGP 138


>sp|ILVC_SACI4|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain M.14.25

Query: 2 PPGPGP 7
P GPGP
Sbjct: 133 PKGPGP 138


>sp|ILVC_SACI3|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain

Query: 2 PPGPGP 7
P GPGP
Sbjct: 133 PKGPGP 138


>sp|ILVC_METS5|KETOL-ACID reductoisomerase (NAD(P)(+))|Metallosphaera sedula (strain ATCC

Query: 2 PPGPGP 7
P GPGP
Sbjct: 133 PKGPGP 138


>sp|UVRB_METBU|UVRABC system protein B|Methanococcoides burtonii (strain DSM 6242

Query: 5 PGPPPS 10
PG PPS
Sbjct: 319 PGDPPS 324


>sp|SYM_METHJ|METHIONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 PGPGPPPS 10
PGP P PS
Sbjct: 519 PGPLPAPS 526


>sp|CARA_METVS|CARBAMOYL phosphate synthase small chain|Methanococcus vannielii (strain ATCC

Query: 1 PPPGPGP 7
P GPGP
Sbjct: 338 PEAGPGP 344


>sp|TRPG_SACS2|ANTHRANILATE synthase component 2|Saccharolobus solfataricus (strain ATCC

Query: 3 PGPGPP 8
PGPG P
Sbjct: 53 PGPGTP 58


>sp|CARA_METM7|CARBAMOYL phosphate synthase small chain|Methanococcus maripaludis (strain C7

Query: 1 PPPGPGP 7
P GPGP
Sbjct: 337 PEAGPGP 343


>sp|RFCL_METLZ|REPLICATION factor C large subunit|Methanocorpusculum labreanum (strain ATCC

Query: 2 PPGPGPPPS 10
PP P PP+
Sbjct: 443 PPVPETPPA 451


>sp|CARA_METMP|CARBAMOYL phosphate synthase small chain|Methanococcus maripaludis (strain

Query: 1 PPPGPGP 7
P GPGP
Sbjct: 337 PEAGPGP 343


>sp|CARA_METM6|CARBAMOYL phosphate synthase small chain|Methanococcus maripaludis (strain C6

Query: 1 PPPGPGP 7
P GPGP
Sbjct: 337 PEAGPGP 343


>sp|CARA_METM5|CARBAMOYL phosphate synthase small chain|Methanococcus maripaludis (strain C5

Query: 1 PPPGPGP 7
P GPGP
Sbjct: 337 PEAGPGP 343


>sp|IPYR_PICTO|INORGANIC pyrophosphatase|Picrophilus torridus (strain ATCC 700027

Query: 2 PPGPGPP 8
PPGP PP
Sbjct: 12 PPGPNPP 18


>sp|QUEC_PYRAE|7-CYANO-7-DEAZAGUANINE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 PPGPG 6
PPGPG
Sbjct: 249 PPGPG 253


>sp|RSMA_METBU|PROBABLE ribosomal RNA small subunit|Methanococcoides burtonii (strain DSM

Query: 1 PPPGPGPPP 9
PP PPP
Sbjct: 169 PPSAFSPPP 177


>sp|TRPG_ARCFU|ANTHRANILATE synthase component 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PGPGPP 8
PGPG P
Sbjct: 48 PGPGKP 53


>sp|CARA_ARCFU|CARBAMOYL phosphate synthase small chain|Archaeoglobus fulgidus (strain ATCC

Query: 1 PPPGPGP 7
P GPGP
Sbjct: 334 PEAGPGP 340


>sp|TRM1_METMA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosarcina mazei

Query: 1 PPPGPGPPPS 10
PPP PPS
Sbjct: 18 PPPDANFPPS 27


>sp|CCA_PYRAE|CCA-ADDING enzyme|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 PGPGPPP 9
P PG PP
Sbjct: 283 PYPGEPP 289


>sp|RL1_THEAC|LARGE ribosomal subunit protein uL1|Thermoplasma acidophilum (strain ATCC

Query: 2 PPGPGPPP 9
PPG P P
Sbjct: 134 PPGQDPAP 141


>sp|Y195_METB6|PUTATIVE HTH-type transcriptional regulatory protein|Methanoregula boonei

Query: 2 PPGPGPP 8
P GPG P
Sbjct: 204 PQGPGVP 210


>sp|CAS4_AERPE|CRISPR-ASSOCIATED exonuclease Cas4|Aeropyrum pernix (strain ATCC 700893

Query: 1 PPPGPG 6
PPP PG
Sbjct: 171 PPPKPG 176




13|Sequence|61|70|GPPPSRQSSP

>sp|AATI_ARCFU|A-TYPE ATP synthase subunit I|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GPPPSRQSSP 10
G PP++ S+P
Sbjct: 307 GEPPTKLSNP 316


>sp|TRUB_PYRNV|PROBABLE tRNA pseudouridine synthase B|Pyrobaculum neutrophilum (strain

Query: 1 GPPPSRQSS 9
G PPSR+S+
Sbjct: 21 GKPPSRRSA 29


>sp|AROA_METKA|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 2 PPPSRQSS 9
PPPS+ S
Sbjct: 18 PPPSKSGS 25


>sp|HDLC_ARCPA|HETERODISULFIDE reductase subunit C-like protein|Archaeoglobus profundus (strain

Query: 3 PPSRQSSP 10
PPS +S P
Sbjct: 157 PPSTESDP 164




14|Sequence|66|75|RQSSPPSASD

***** No hits found ******


15|Sequence|71|80|PSASDCFGSN

>sp|LEUC_METJA|ISOPROPYLMALATE/CITRAMALATE isomerase large subunit|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PSASDCFGS 9
PS S C GS
Sbjct: 363 PSCSACMGS 371


>sp|FDHD_METTH|SULFUR carrier protein FdhD|Methanothermobacter thermautotrophicus (strain

Query: 3 ASDCFG 8
SDCFG
Sbjct: 96 GSDCFG 101


>sp|CSG_METVS|S-LAYER protein|Methanococcus vannielii (strain ATCC 35089

Query: 1 PSASDCFGSN 10
PS D FG+N
Sbjct: 173 PSGWDIFGTN 182


>sp|GLPA1_HALVD|ANAEROBIC glycerol-3-phosphate dehydrogenase subunit A1|Haloferax volcanii

Query: 1 PSASDCFGSN 10
PSA +C N
Sbjct: 62 PSAKECIEEN 71




16|Sequence|76|85|CFGSNGNGGG

>sp|GLNA_METJA|GLUTAMINE synthetase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 FGSNGNG 8
FG NGNG
Sbjct: 247 FGMNGNG 253


>sp|MT872_AERPE|DNA (cytosine-5-)-methyltransferase M.ApeKI|Aeropyrum pernix (strain

Query: 4 SNGNGG 9
SNGNGG
Sbjct: 172 SNGNGG 177


>sp|SECF_HALWD|PROTEIN-EXPORT membrane protein SecF|Haloquadratum walsbyi (strain DSM 16790

Query: 2 FGSNGNGG 9
F SNGN G
Sbjct: 93 FQSNGNSG 100


>sp|FPRA_METTM|COENZYME F420H(2) oxidase|Methanothermobacter marburgensis (strain ATCC

Query: 2 FGSNGNGGG 10
FGS G GG
Sbjct: 349 FGSMGGNGG 357


>sp|GLNA_METTH|GLUTAMINE synthetase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 FGSNGNG 8
FG NG+G
Sbjct: 236 FGENGSG 242


>sp|RL4_PYRAE|LARGE ribosomal subunit protein uL4|Pyrobaculum aerophilum (strain ATCC

Query: 1 CFGSNGNGG 9
CF N GG
Sbjct: 108 CFAPNTRGG 116


>sp|GLNA_SULAC|GLUTAMINE synthetase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 FGSNGNG 8
FG NG+G
Sbjct: 261 FGDNGSG 267


>sp|RECJ1_METJA|EXONUCLEASE RecJ1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 NGNGGG 10
NG+GGG
Sbjct: 439 NGSGGG 444


>sp|RNP2_METS3|RIBONUCLEASE P protein component 2|Methanobrevibacter smithii (strain ATCC

Query: 2 FGSNGNG 8
FG NG G
Sbjct: 44 FGENGTG 50


>sp|RTCB_NANEQ|TRNA-SPLICING ligase RtcB|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 FGSNGNGGG 10
FGS+ +G G
Sbjct: 395 FGSSAHGAG 403


>sp|RECJ2_METJA|EXONUCLEASE RecJ2|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 6 GNGGG 10
GNGGG
Sbjct: 397 GNGGG 401


Query: 2 FGSNGNG 8
FG NG G
Sbjct: 395 FGGNGGG 401


>sp|GLNA_METVO|GLUTAMINE synthetase|Methanococcus voltae

Query: 2 FGSNGNG 8
FG NG+G
Sbjct: 240 FGMNGSG 246


>sp|SPEH_THEKO|S-ADENOSYLMETHIONINE decarboxylase proenzyme|Thermococcus kodakarensis (strain ATCC

Query: 5 NGNGGG 10
NGNG G
Sbjct: 138 NGNGSG 143




17|Sequence|81|90|GNGGGAFRPG

>sp|SYI_METB6|ISOLEUCINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 2 NGGGAFRP 9
+G G FRP
Sbjct: 348 DGAGKFRP 355


>sp|RAD50_AERPE|DNA double-strand break repair Rad50|Aeropyrum pernix (strain ATCC

Query: 3 GGGAFRP 9
G GA+RP
Sbjct: 817 GNGAYRP 823


>sp|Y1319_METJA|UNCHARACTERIZED sodium-dependent transporter MJ1319|Methanocaldococcus jannaschii

Query: 2 NGGGAF 7
NGGGAF
Sbjct: 39 NGGGAF 44


>sp|SYFA_METMP|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus maripaludis (strain DSM 14266

Query: 3 GGGAFRP 9
G G FRP
Sbjct: 444 GAGVFRP 450


>sp|SYFA_METM7|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus maripaludis (strain C7 /

Query: 3 GGGAFRP 9
G G FRP
Sbjct: 444 GAGVFRP 450


>sp|PURE_PYRHO|N5-CARBOXYAMINOIMIDAZOLE ribonucleotide mutase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GNGGGAFRPG 10
G GG A PG
Sbjct: 71 GAGGAAHLPG 80


>sp|SYA_NITMS|ALANINE--TRNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 3 GGGAFRP 9
GGG+F P
Sbjct: 203 GGGSFGP 209


>sp|PURE_PYRAB|N5-CARBOXYAMINOIMIDAZOLE ribonucleotide mutase|Pyrococcus abyssi (strain GE5 /

Query: 1 GNGGGAFRPG 10
G GG A PG
Sbjct: 68 GAGGAAHLPG 77


>sp|IF2P_AERPE|PROBABLE translation initiation factor IF-2|Aeropyrum pernix (strain ATCC

Query: 4 GGAFRPG 10
GG RPG
Sbjct: 501 GGVIRPG 507


>sp|NAC_METMP|NASCENT polypeptide-associated complex protein|Methanococcus maripaludis

Query: 3 GGGAFRP 9
GGG F P
Sbjct: 4 GGGKFNP 10


>sp|NAC_METM7|NASCENT polypeptide-associated complex protein|Methanococcus maripaludis

Query: 3 GGGAFRP 9
GGG F P
Sbjct: 4 GGGKFNP 10


>sp|RADB_THEKO|DNA repair and recombination protein|Thermococcus kodakarensis

Query: 4 GGAFRPG 10
GG F PG
Sbjct: 14 GGGFAPG 20


>sp|NAC_METM5|NASCENT polypeptide-associated complex protein|Methanococcus maripaludis

Query: 3 GGGAFRP 9
GGG F P
Sbjct: 4 GGGKFNP 10


>sp|RL4_META3|LARGE ribosomal subunit protein uL4|Methanococcus aeolicus (strain ATCC

Query: 1 GNGGGAFRP 9
G G GAF P
Sbjct: 74 GQGAGAFVP 82


>sp|PURE_SACS2|N5-CARBOXYAMINOIMIDAZOLE ribonucleotide mutase|Saccharolobus solfataricus (strain ATCC

Query: 1 GNGGGAFRPG 10
G GG A PG
Sbjct: 63 GAGGAAHLPG 72


>sp|AMPA_CENSY|PROBABLE cytosol aminopeptidase|Cenarchaeum symbiosum (strain A)

Query: 3 GGGAFRPG 10
GG ++RPG
Sbjct: 309 GGSSYRPG 316


>sp|NAC_METM6|NASCENT polypeptide-associated complex protein|Methanococcus maripaludis

Query: 3 GGGAFRP 9
GGG F P
Sbjct: 4 GGGKFNP 10


>sp|RL37A_NATPD|LARGE ribosomal subunit protein eL43|Natronomonas pharaonis (strain

Query: 4 GGAFRP 9
GGA+RP
Sbjct: 61 GGAYRP 66




18|Sequence|86|95|AFRPGSRRLL

>sp|SYL_PYRIL|LEUCINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 AFRPGSRRLL 10
AF PG+RR++
Sbjct: 829 AFGPGARRIV 838


>sp|VAPB5_ARCFU|PUTATIVE antitoxin VapB5|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 FRPGSR 7
FRPGS+
Sbjct: 22 FRPGSK 27


>sp|CAS3_HALVD|CRISPR-ASSOCIATED nuclease/helicase Cas3|Haloferax volcanii (strain ATCC 29605

Query: 2 FRPGSRRLL 10
+RP RRLL
Sbjct: 657 YRPFDRRLL 665


>sp|RAD25_HALSA|PUTATIVE DNA 3'-5' helicase Rad25|Halobacterium salinarum (strain ATCC

Query: 2 FRPGSRRLL 10
RPGS+ LL
Sbjct: 555 MRPGSQSLL 563


>sp|Y042_THEAC|UPF0215 protein Ta0042|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 FRPGSRRL 9
F PG RR+
Sbjct: 17 FEPGPRRM 24




19|Sequence|91|100|SRRLLGLGGP

>sp|SYE_HALSA|GLUTAMATE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 SRRLLGLGG 9
+RRL+G+GG
Sbjct: 192 ARRLIGMGG 200


>sp|SYE_HALS3|GLUTAMATE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 1 SRRLLGLGG 9
+RRL+G+GG
Sbjct: 192 ARRLIGMGG 200


>sp|URED_HALWD|UREASE accessory protein UreD|Haloquadratum walsbyi (strain DSM 16790

Query: 2 RRLLGLGGP 10
R LLG+G P
Sbjct: 292 RELLGVGAP 300


>sp|PGP_METMA|PHOSPHOGLYCOLATE phosphatase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SRRLLGLGG 9
+ RL+GLGG
Sbjct: 50 ASRLIGLGG 58


>sp|MDH_THEVO|MALATE dehydrogenase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 RRLLGLGG 9
+R++GLGG
Sbjct: 144 QRIMGLGG 151


>sp|HDRA1_METAC|FERREDOXIN:COB-COM heterodisulfide reductase subunit A|Methanosarcina acetivorans

Query: 3 RLLGLGGP 10
R+LG+ GP
Sbjct: 364 RVLGINGP 371


>sp|IPK_HALVD|ISOPENTENYL phosphate kinase|Haloferax volcanii (strain ATCC 29605

Query: 2 RRLLGLGGP 10
R+LL LG P
Sbjct: 215 RKLLALGAP 223


>sp|DTDA_HALMA|D-AMINOACYL-TRNA deacylase|Haloarcula marismortui (strain ATCC 43049

Query: 2 RRLLGLGG 9
R LLG+GG
Sbjct: 192 RHLLGVGG 199


>sp|SYR_METTP|ARGININE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 RLLGLGGP 10
R+LG+G P
Sbjct: 342 RMLGIGEP 349


>sp|CAPPA_PYRAR|PHOSPHOENOLPYRUVATE carboxylase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 RRLLGLGGP 10
R +LG+G P
Sbjct: 223 RPILGMGSP 231


>sp|MDH_PICTO|MALATE dehydrogenase|Picrophilus torridus (strain ATCC 700027

Query: 3 RLLGLGG 9
R++GLGG
Sbjct: 145 RIIGLGG 151


>sp|HTPX_METTH|PROTEASE HtpX homolog|Methanothermobacter thermautotrophicus (strain ATCC

Query: 4 LLGLGGP 10
+LGLGGP
Sbjct: 40 ILGLGGP 46


>sp|SYE_METLZ|GLUTAMATE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 SRRLLGLGG 9
+R+LL LGG
Sbjct: 184 ARKLLELGG 192


>sp|CAPPA_PYRCJ|PHOSPHOENOLPYRUVATE carboxylase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 RRLLGLGGP 10
R +LG+G P
Sbjct: 222 RPILGMGSP 230


>sp|PELO_METLZ|PROTEIN pelota homolog|Methanocorpusculum labreanum (strain ATCC 43576

Query: 3 RLLGLGG 9
RL+GLGG
Sbjct: 327 RLVGLGG 333


>sp|UREG_HALWD|UREASE accessory protein UreG|Haloquadratum walsbyi (strain DSM 16790

Query: 5 LGLGGP 10
+GLGGP
Sbjct: 9 VGLGGP 14


>sp|UREG_NATPD|UREASE accessory protein UreG|Natronomonas pharaonis (strain ATCC 35678

Query: 5 LGLGGP 10
+GLGGP
Sbjct: 9 VGLGGP 14




20|Sequence|96|105|GLGGPPRPFV

>sp|DNLI_THEFM|DNA ligase|Thermococcus fumicolans

Query: 1 GLGGPPRPF 9
G GG PRPF
Sbjct: 304 GDGGKPRPF 312


>sp|DNLI_THEON|DNA ligase|Thermococcus onnurineus (strain NA1)

Query: 1 GLGGPPRPF 9
G GG PRPF
Sbjct: 307 GEGGRPRPF 315


>sp|CAS3_HALVD|CRISPR-ASSOCIATED nuclease/helicase Cas3|Haloferax volcanii (strain ATCC 29605

Query: 3 GGPPRPFV 10
GGP RP V
Sbjct: 331 GGPTRPIV 338


>sp|DIPPS_ARCFU|BIFUNCTIONAL IPC transferase and DIPP|Archaeoglobus fulgidus (strain ATCC

Query: 2 LGGPPRPFV 10
LGG P+P V
Sbjct: 86 LGGVPKPLV 94


>sp|SEPS_METTH|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 LGGPPRP 8
LGG PRP
Sbjct: 95 LGGLPRP 101


>sp|DP2L_NATPD|DNA polymerase II large subunit|Natronomonas pharaonis (strain ATCC

Query: 4 GPPRP 8
GPPRP
Sbjct: 323 GPPRP 327


>sp|DNLI_THEKO|DNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 GLGGPPRPF 9
G G PRPF
Sbjct: 304 GENGRPRPF 312


>sp|DNLI_METVS|DNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 4 GPPRPF 9
G PRPF
Sbjct: 310 GKPRPF 315


>sp|DNLI_METMP|DNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 4 GPPRPF 9
G PRPF
Sbjct: 310 GKPRPF 315


>sp|DNLI_METM7|DNA ligase|Methanococcus maripaludis (strain C7 /

Query: 4 GPPRPF 9
G PRPF
Sbjct: 310 GKPRPF 315


>sp|DNLI_METM6|DNA ligase|Methanococcus maripaludis (strain C6 /

Query: 4 GPPRPF 9
G PRPF
Sbjct: 310 GKPRPF 315


>sp|DNLI_METM5|DNA ligase|Methanococcus maripaludis (strain C5 /

Query: 4 GPPRPF 9
G PRPF
Sbjct: 310 GKPRPF 315


>sp|DNLI_METJA|DNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 GPPRPF 9
G PRPF
Sbjct: 308 GKPRPF 313


>sp|SEPS_METPE|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 LGGPPRPFV 10
LGG PRP V
Sbjct: 97 LGGLPRPNV 105


>sp|DNLI_METKA|DNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 4 GPPRPF 9
G PRPF
Sbjct: 309 GKPRPF 314


>sp|DP2L_METMA|DNA polymerase II large subunit|Methanosarcina mazei (strain ATCC

Query: 3 GGPPRPFV 10
GG PRP V
Sbjct: 35 GGDPRPVV 42


>sp|SEPS_METHJ|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 LGGPPRPFV 10
LGG PRP V
Sbjct: 97 LGGLPRPNV 105


>sp|SYH_HALMA|HISTIDINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 GLGGPPRPFV 10
G GG P P V
Sbjct: 303 GFGGQPTPAV 312


>sp|SEPS_METMJ|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 LGGPPRPFV 10
LGG PRP V
Sbjct: 97 LGGLPRPNV 105


>sp|SEPS_METAR|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 LGGPPRPFV 10
+GG PRP V
Sbjct: 96 IGGLPRPNV 104


>sp|CAPPA_PYRFU|PHOSPHOENOLPYRUVATE carboxylase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GLGGPP 6
G+GGPP
Sbjct: 252 GVGGPP 257


>sp|Y1237_ARCFU|UNCHARACTERIZED protein AF_1237|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GLGGPPRP 8
G+G PP P
Sbjct: 148 GMGLPPSP 155


>sp|LYSK_PYRAE|PUTATIVE [LysW]-lysine/[LysW]-ornithine hydrolase|Pyrobaculum aerophilum

Query: 3 GGPPRP 8
GGPPRP
Sbjct: 128 GGPPRP 133


>sp|CAPPA_PYRAB|PHOSPHOENOLPYRUVATE carboxylase|Pyrococcus abyssi (strain GE5 /

Query: 1 GLGGPP 6
G+GGPP
Sbjct: 249 GVGGPP 254


>sp|KDPB_THEAC|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Thermoplasma acidophilum (strain ATCC

Query: 1 GLGGPPRPFV 10
GLGG PF+
Sbjct: 640 GLGGVVVPFI 649


>sp|YPV2_METTF|UNCHARACTERIZED protein ORF2|Methanothermobacter thermautotrophicus

Query: 1 GLGGPP 6
GLG PP
Sbjct: 84 GLGNPP 89


>sp|GCH3_PYRAR|GTP cyclohydrolase III|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 GLGGPPRPF 9
G+G PRP+
Sbjct: 188 GVGVSPRPY 196


>sp|TRM1_METKA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanopyrus kandleri

Query: 4 GPPRPFV 10
GPP PF+
Sbjct: 131 GPPVPFL 137


>sp|ILVD_METS5|DIHYDROXY-ACID dehydratase|Metallosphaera sedula (strain ATCC 51363

Query: 2 LGGPPRPFV 10
LGG PR F
Sbjct: 68 LGGTPRTFT 76


>sp|COOS1_METAC|CARBON monoxide dehydrogenase 1|Methanosarcina acetivorans (strain ATCC

Query: 1 GLGGPPRPFV 10
LGG P P +
Sbjct: 422 ALGGSPAPLI 431


>sp|DP2L_METLZ|DNA polymerase II large subunit|Methanocorpusculum labreanum (strain

Query: 2 LGGPPRPFV 10
LG PRP+V
Sbjct: 34 LGVDPRPYV 42


>sp|DNLI1_THEPD|DNA ligase 1|Thermofilum pendens (strain DSM 2475

Query: 2 LGGPPRPF 9
+GG P PF
Sbjct: 278 IGGAPVPF 285


>sp|DNLI_NATPD|DNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 4 GPPRPF 9
G PRPF
Sbjct: 311 GTPRPF 316


>sp|COOS1_METMA|CARBON monoxide dehydrogenase 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GLGGPPRPFV 10
LGG P P +
Sbjct: 422 ALGGSPAPLI 431


>sp|DNLI_IGNH4|DNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 4 GPPRPF 9
G PRPF
Sbjct: 318 GEPRPF 323


>sp|KDPB_THEVO|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Thermoplasma volcanium (strain ATCC

Query: 1 GLGGPPRPFV 10
G+GG PF+
Sbjct: 643 GIGGVITPFI 652


>sp|APGM_PYRFU|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 GGPPRPF 9
G PP PF
Sbjct: 171 GKPPHPF 177


>sp|SEPS_METLZ|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 LGGPPRPFV 10
+GG PRP V
Sbjct: 97 VGGLPRPNV 105


>sp|SEPS_METB6|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanoregula boonei (strain DSM 21154

Query: 2 LGGPPRPFV 10
+GG PRP V
Sbjct: 97 IGGLPRPNV 105


>sp|DP2L_METBF|DNA polymerase II large subunit|Methanosarcina barkeri (strain Fusaro

Query: 3 GGPPRPFV 10
GG P+P V
Sbjct: 35 GGDPKPVV 42


>sp|RL44E_THEAC|LARGE ribosomal subunit protein eL42|Thermoplasma acidophilum (strain

Query: 1 GLGGPPRP 8
G GG PRP
Sbjct: 46 GYGGFPRP 53


>sp|RL44E_METJA|LARGE ribosomal subunit protein eL42|Methanocaldococcus jannaschii

Query: 1 GLGGPPRPF 9
G GG PRP
Sbjct: 46 GYGGFPRPL 54




21|Sequence|101|110|PRPFVVLLLP

>sp|TRI_THEAC|TRICORN protease|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 RPFVVLLLP 10
+PFV+ L+P
Sbjct: 538 KPFVIPLIP 546


>sp|FTSY_THEAC|SIGNAL recognition particle receptor FtsY|Thermoplasma acidophilum

Query: 2 RPFVVLLL 9
+PFVVL L
Sbjct: 85 KPFVVLFL 92


>sp|APGM_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina barkeri (strain Fusaro /

Query: 3 PFVVLLLP 10
PF +L+LP
Sbjct: 331 PFTILVLP 338


>sp|THIE_METHJ|THIAMINE-PHOSPHATE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 PRPFVV 6
PRPF++
Sbjct: 98 PRPFII 103


>sp|APGM_METMA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 PFVVLLLP 10
PF +L+LP
Sbjct: 331 PFTILVLP 338


>sp|G1PDH_SULAC|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Sulfolobus acidocaldarius (strain ATCC

Query: 1 PRPFVVLLLP 10
P+PF+V+ P
Sbjct: 34 PQPFLVITGP 43


>sp|SRP54_PYRCJ|SIGNAL recognition particle 54 kDa|Pyrobaculum calidifontis (strain DSM

Query: 2 RPFVVLLL 9
+P+VVLLL
Sbjct: 97 KPYVVLLL 104


>sp|AGLB1_PYRHO|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase 1|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PRPFVVLLLP 10
P P+VV L P
Sbjct: 669 PFPYVVYLTP 678


>sp|SRP54_PYRAE|SIGNAL recognition particle 54 kDa|Pyrobaculum aerophilum (strain ATCC

Query: 2 RPFVVLLL 9
+P++VLLL
Sbjct: 98 KPYIVLLL 105


>sp|SRP54_PYRNV|SIGNAL recognition particle 54 kDa|Pyrobaculum neutrophilum (strain DSM

Query: 2 RPFVVLLL 9
+P+VVLLL
Sbjct: 98 KPYVVLLL 105


>sp|SRP54_PYRAR|SIGNAL recognition particle 54 kDa|Pyrobaculum arsenaticum (strain DSM

Query: 2 RPFVVLLL 9
+P++VLLL
Sbjct: 98 KPYIVLLL 105




22|Sequence|106|115|VLLLPLASPG

>sp|RRP42_PYRFU|EXOSOME complex component Rrp42|Pyrococcus furiosus (strain ATCC 43587

Query: 1 VLLLPLASP 9
V L+PLASP
Sbjct: 84 VELVPLASP 92


>sp|RRP42_PYRAB|EXOSOME complex component Rrp42|Pyrococcus abyssi (strain GE5 /

Query: 1 VLLLPLASP 9
V L+PLASP
Sbjct: 84 VELVPLASP 92


>sp|RRP42_METTH|EXOSOME complex component Rrp42|Methanothermobacter thermautotrophicus

Query: 3 LLPLASP 9
LLP+ASP
Sbjct: 87 LLPMASP 93


>sp|RRP42_THEGJ|EXOSOME complex component Rrp42|Thermococcus gammatolerans (strain DSM

Query: 1 VLLLPLASP 9
V L+PLASP
Sbjct: 84 VELVPLASP 92


>sp|RRP42_ARCFU|EXOSOME complex component Rrp42|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 LLPLASP 9
L+PLASP
Sbjct: 85 LVPLASP 91


>sp|RRP42_THEKO|EXOSOME complex component Rrp42|Thermococcus kodakarensis (strain ATCC

Query: 1 VLLLPLASP 9
V L+PLASP
Sbjct: 84 VELVPLASP 92


>sp|RRP42_PYRHO|EXOSOME complex component Rrp42|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 VLLLPLASP 9
V L+PLASP
Sbjct: 84 VELVPLASP 92


>sp|RRP42_THEON|EXOSOME complex component Rrp42|Thermococcus onnurineus (strain NA1)

Query: 1 VLLLPLASP 9
V L+PLASP
Sbjct: 84 VELVPLASP 92


>sp|RRP42_METAR|EXOSOME complex component Rrp42|Methanocella arvoryzae (strain DSM 22066

Query: 3 LLPLASP 9
L+PLASP
Sbjct: 85 LVPLASP 91


>sp|COFG_HALSA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Halobacterium salinarum (strain ATCC 700922

Query: 3 LLPLASPG 10
LLP A+PG
Sbjct: 135 LLPHANPG 142


>sp|COFG_HALS3|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Halobacterium salinarum (strain ATCC 29341

Query: 3 LLPLASPG 10
LLP A+PG
Sbjct: 135 LLPHANPG 142


>sp|COFG_HALMA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Haloarcula marismortui (strain ATCC 43049

Query: 3 LLPLASPG 10
LLP A+PG
Sbjct: 132 LLPHANPG 139


>sp|BASB_HALS3|CHEMOTACTIC signal transduction system substrate-binding|Halobacterium

Query: 3 LLPLASPG 10
LLPL+ PG
Sbjct: 39 LLPLSGPG 46




23|Sequence|111|120|LASPGAPPAA

>sp|RPO1N_METJA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanocaldococcus jannaschii (strain

Query: 3 SPGAPPA 9
+PG PPA
Sbjct: 284 APGIPPA 290


>sp|FRHG_METVO|COENZYME F420 hydrogenase subunit gamma|Methanococcus voltae

Query: 1 LASPGAPPA 9
LA PG PP+
Sbjct: 136 LALPGCPPS 144


>sp|RPO1N_THEAC|DNA-DIRECTED RNA polymerase subunit Rpo1N|Thermoplasma acidophilum (strain ATCC

Query: 3 SPGAPPA 9
+PG PPA
Sbjct: 283 TPGIPPA 289


>sp|RPO1N_METVS|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanococcus vannielii (strain ATCC

Query: 3 SPGAPPA 9
+PG PPA
Sbjct: 284 APGIPPA 290


>sp|GLYA_PYRNV|SERINE hydroxymethyltransferase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 LASPGAPPAA 10
LAS G PP A
Sbjct: 297 LASEGVPPVA 306


>sp|FRHG_METTH|COENZYME F420 hydrogenase subunit gamma|Methanothermobacter

Query: 1 LASPGAPPA 9
LA PG PP+
Sbjct: 127 LAIPGCPPS 135


>sp|DNAJ_METTE|CHAPERONE protein DnaJ|Methanosarcina thermophila

Query: 4 PGAPPA 9
PGAPP
Sbjct: 240 PGAPPG 245


>sp|RPO1N_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo1N|Sulfolobus acidocaldarius (strain ATCC

Query: 4 PGAPPA 9
PG PPA
Sbjct: 282 PGLPPA 287


>sp|FRHG_METJA|COENZYME F420 hydrogenase subunit gamma|Methanocaldococcus jannaschii

Query: 1 LASPGAPPA 9
LA PG PP+
Sbjct: 123 LAIPGCPPS 131


>sp|Y1096_ARCFU|UNCHARACTERIZED protein AF_1096|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 SPGAPPAA 10
+P APP+A
Sbjct: 42 APAAPPSA 49


>sp|PRIS_HALLT|DNA primase small subunit PriS|Halorubrum lacusprofundi (strain ATCC

Query: 2 ASPGAPPAA 10
ASP PP A
Sbjct: 20 ASPALPPDA 28


>sp|G6PI_HALSA|PROBABLE glucose-6-phosphate isomerase|Halobacterium salinarum (strain

Query: 2 ASPGAPPAA 10
A+PG PP A
Sbjct: 13 ATPGVPPDA 21




24|Sequence|116|125|APPAAPTRAS

>sp|IF1A_METM7|TRANSLATION initiation factor 1A|Methanococcus maripaludis (strain C7 /

Query: 1 APPAAPTR 8
APP PTR
Sbjct: 6 APPQQPTR 13


>sp|IF1A_METM6|TRANSLATION initiation factor 1A|Methanococcus maripaludis (strain C6 /

Query: 1 APPAAPTR 8
APP PTR
Sbjct: 6 APPQQPTR 13


>sp|SYM_PYRIL|METHIONINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 PPAAPTR 8
PP APTR
Sbjct: 408 PPGAPTR 414




25|Sequence|121|130|PTRASPLGAR

>sp|RL14_PYRHO|LARGE ribosomal subunit protein uL14|Pyrococcus horikoshii (strain ATCC

Query: 1 PTRASPLGA 9
PTRA P+GA
Sbjct: 17 PTRAIPIGA 25


>sp|RL14_PYRAB|LARGE ribosomal subunit protein uL14|Pyrococcus abyssi (strain GE5 /

Query: 1 PTRASPLGA 9
PTRA P+GA
Sbjct: 17 PTRAIPVGA 25


>sp|RL14_THEKO|LARGE ribosomal subunit protein uL14|Thermococcus kodakarensis (strain

Query: 1 PTRASPLGA 9
PTRA P+GA
Sbjct: 17 PTRALPIGA 25


>sp|PYRG_HALHT|CTP synthase|Haloarcula hispanica (strain ATCC 33960

Query: 1 PTRASP 6
PTRASP
Sbjct: 524 PTRASP 529


>sp|RL14_PYRFU|LARGE ribosomal subunit protein uL14|Pyrococcus furiosus (strain ATCC

Query: 1 PTRASPLGA 9
PTRA P+GA
Sbjct: 17 PTRALPVGA 25


>sp|PYRG_HALMA|CTP synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 PTRASP 6
PTRASP
Sbjct: 524 PTRASP 529


>sp|PYRG_HALSA|CTP synthase|Halobacterium salinarum (strain ATCC 700922

Query: 1 PTRASP 6
PTRASP
Sbjct: 520 PTRASP 525


>sp|PYRG_HALS3|CTP synthase|Halobacterium salinarum (strain ATCC 29341

Query: 1 PTRASP 6
PTRASP
Sbjct: 520 PTRASP 525


>sp|RL14_METTH|LARGE ribosomal subunit protein uL14|Methanothermobacter

Query: 2 TRASPLGAR 10
TRA P+GAR
Sbjct: 9 TRALPVGAR 17


>sp|RL14_CENSY|LARGE ribosomal subunit protein uL14|Cenarchaeum symbiosum (strain A)

Query: 2 TRASPLGAR 10
TRA P+GAR
Sbjct: 21 TRALPVGAR 29


>sp|GCH3_PYRNV|GTP cyclohydrolase III|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 RASPLGA 9
RASP+GA
Sbjct: 78 RASPVGA 84




26|Sequence|126|135|PLGARASPPR

>sp|TATCT_HALVD|SEC-INDEPENDENT protein translocase protein TatCt|Haloferax volcanii (strain ATCC

Query: 3 GARASPP 9
G RA+PP
Sbjct: 374 GVRAAPP 380




27|Sequence|131|140|ASPPRSGVSL

>sp|DHYS_PYRHO|PROBABLE deoxyhypusine synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 ASPPRSGVS 9
+PPR GVS
Sbjct: 296 GAPPREGVS 304


>sp|CDC62_METMA|ORC1-TYPE DNA replication protein 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 SPPRSGVSL 10
SPP SG++
Sbjct: 111 SPPNSGIAF 119


>sp|CDC62_METAC|ORC1-TYPE DNA replication protein 2|Methanosarcina acetivorans (strain ATCC

Query: 2 SPPRSGVSL 10
SPP SG++
Sbjct: 111 SPPNSGIAF 119


>sp|ACD_METJA|ACETATE--COA ligase [ADP-forming]|Methanocaldococcus jannaschii (strain ATCC

Query: 3 PPRSGVSL 10
PP+ GVS+
Sbjct: 151 PPKGGVSI 158


>sp|CDC6C_HALMA|ORC1-TYPE DNA replication protein 3|Haloarcula marismortui (strain ATCC 43049

Query: 3 PPRSGVSL 10
PP SG+S
Sbjct: 114 PPSSGISF 121


>sp|PSLS_METTH|PHOSPHOSULFOLACTATE synthase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 SPPRSG 7
+PPRSG
Sbjct: 8 TPPRSG 13


>sp|CDC66_HALSA|ORC1-TYPE DNA replication protein 6|Halobacterium salinarum (strain ATCC

Query: 3 PPRSGVSL 10
PP SG+S
Sbjct: 114 PPSSGISF 121


>sp|IF2B_AERPE|TRANSLATION initiation factor 2 subunit|Aeropyrum pernix (strain ATCC 700893

Query: 3 PPRSGVS 9
PP+SG S
Sbjct: 28 PPKSGTS 34




28|Sequence|136|145|SGVSLARPAP

>sp|ASSY_METHJ|ARGININOSUCCINATE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 GVSLARP 8
G SLARP
Sbjct: 90 GTSLARP 96


>sp|RS10_METPE|SMALL ribosomal subunit protein uS10|Methanosphaerula palustris (strain

Query: 1 SGVSLARPAP 10
+GV+LA P P
Sbjct: 30 TGVNLAGPIP 39


>sp|RS10_METHJ|SMALL ribosomal subunit protein uS10|Methanospirillum hungatei JF-1

Query: 1 SGVSLARPAP 10
+GV+LA P P
Sbjct: 30 TGVNLAGPIP 39


>sp|RS10_METMJ|SMALL ribosomal subunit protein uS10|Methanoculleus marisnigri (strain

Query: 1 SGVSLARPAP 10
+GV+LA P P
Sbjct: 30 TGVNLAGPIP 39


>sp|RL10_IGNH4|LARGE ribosomal subunit protein uL10|Ignicoccus hospitalis (strain KIN4/I

Query: 2 GVSLARPAP 10
GVS+A P P
Sbjct: 238 GVSIAYPVP 246


>sp|RS10_METB6|SMALL ribosomal subunit protein uS10|Methanoregula boonei (strain DSM

Query: 1 SGVSLARPAP 10
+GV+LA P P
Sbjct: 30 TGVNLAGPIP 39


>sp|KHSE_HALMA|HOMOSERINE kinase|Haloarcula marismortui (strain ATCC 43049

Query: 2 GVSLARPA 9
GV+L RPA
Sbjct: 21 GVALERPA 28




29|Sequence|141|150|ARPAPGCPRP

>sp|UPPS_METMA|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Methanosarcina mazei

Query: 3 PAPGCPRP 10
PAPG P P
Sbjct: 194 PAPGVPVP 201


>sp|SYV_PYRAE|VALINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 RPAPGCPR 9
RP P CPR
Sbjct: 170 RPTPWCPR 177


>sp|ACDD_METTH|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanothermobacter

Query: 3 PAPGCPRP 10
P PG PRP
Sbjct: 114 PMPGLPRP 121


>sp|Y860_PYRFU|UNCHARACTERIZED protein PF0860|Pyrococcus furiosus (strain ATCC 43587

Query: 2 RPAPGCPR 9
+P PG PR
Sbjct: 18 KPLPGSPR 25


>sp|Y993_METJA|PUTATIVE hydrogenase expression/formation protein

Query: 3 PAPGCP 8
P PGCP
Sbjct: 57 PGPGCP 62


>sp|DP2L_THEVO|DNA polymerase II large subunit|Thermoplasma volcanium (strain ATCC

Query: 3 PAPGCPR 9
P+P CP+
Sbjct: 631 PSPTCPK 637


>sp|DP2L_THEAC|DNA polymerase II large subunit|Thermoplasma acidophilum (strain ATCC

Query: 3 PAPGCPR 9
P P CPR
Sbjct: 626 PTPVCPR 632


>sp|CBIA_METBF|COBYRINATE a,c-diamide synthase|Methanosarcina barkeri (strain Fusaro /

Query: 5 PGCPRP 10
PG PRP
Sbjct: 264 PGAPRP 269


>sp|THPR_ARCFU|RNA 2',3'-cyclic phosphodiesterase|Archaeoglobus fulgidus (strain

Query: 1 ARPAPGCPR 9
A P PG PR
Sbjct: 77 AFPNPGSPR 85


>sp|DNLI_IGNH4|DNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 RPAPGCP-RP 10
RP PG P RP
Sbjct: 224 RPKPGVPVRP 233


>sp|PYRD_NATPD|DIHYDROOROTATE dehydrogenase (quinone)|Natronomonas pharaonis (strain ATCC 35678

Query: 1 ARPAPGCPRP 10
A P G PRP
Sbjct: 94 AEPQAGNPRP 103


>sp|ACDD_METJA|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanocaldococcus

Query: 3 PAPGCPRP 10
P PG P+P
Sbjct: 134 PMPGLPKP 141


>sp|Y1137_METTH|UNCHARACTERIZED protein MTH_1137|Methanothermobacter thermautotrophicus (strain

Query: 3 PAPGCPR 9
P GCPR
Sbjct: 150 PFEGCPR 156


>sp|SYM_PYRAR|METHIONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 ARPAPGCPRP 10
A P PG P P
Sbjct: 407 AVPPPGKPSP 416


>sp|MRE11_METKA|DNA double-strand break repair protein|Methanopyrus kandleri (strain

Query: 3 PAPGCPRP 10
P PG P P
Sbjct: 214 PYPGSPEP 221




30|Sequence|146|155|GCPRPACEPV

>sp|GLNA1_METMA|GLUTAMINE synthetase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 CPRPACEP 9
CP PAC P
Sbjct: 339 CPDPACNP 346


>sp|KVAP_AERPE|VOLTAGE-GATED potassium channel|Aeropyrum pernix (strain ATCC 700893

Query: 1 GCPRPACEP 9
G P P+C P
Sbjct: 254 GEPEPSCSP 262


>sp|PYRB_META3|ASPARTATE carbamoyltransferase catalytic subunit|Methanococcus aeolicus

Query: 1 GCPRPACE 8
G PR ACE
Sbjct: 108 GAPRLACE 115


>sp|GLNA_METVO|GLUTAMINE synthetase|Methanococcus voltae

Query: 3 PRPACEP 9
P PAC P
Sbjct: 340 PDPACNP 346


>sp|GLNA_METMP|GLUTAMINE synthetase|Methanococcus maripaludis (strain DSM 14266

Query: 3 PRPACEP 9
P PAC P
Sbjct: 340 PDPACNP 346


>sp|AMZA_PYRHO|ARCHAEMETZINCIN horikoshii (strain ATCC 700860

Query: 2 CPRPAC 7
CP P C
Sbjct: 148 CPNPKC 153


>sp|AMZA_PYRAB|ARCHAEMETZINCIN abyssi (strain GE5 /

Query: 2 CPRPAC 7
CP P C
Sbjct: 148 CPNPKC 153


>sp|AMZA_PYRFU|ARCHAEMETZINCIN furiosus (strain ATCC 43587

Query: 2 CPRPAC 7
CP P C
Sbjct: 148 CPNPKC 153


>sp|PYRI_SACS2|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus solfataricus

Query: 2 CPRPAC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|IDH_CALNO|ISOCITRATE dehydrogenase [NADP]|Caldococcus noboribetus

Query: 1 GCPRPACEP 9
G P P C P
Sbjct: 139 GQPTPHCHP 147


>sp|PYRI_SACI7|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPAC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI6|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPAC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI4|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPAC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI3|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPAC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI2|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPAC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_SACI1|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 2 CPRPAC 7
CP P C
Sbjct: 113 CPNPQC 118


>sp|PYRI_METPE|ASPARTATE carbamoyltransferase regulatory chain|Methanosphaerula palustris

Query: 2 CPRPAC-----EPV 10
CP P C EPV
Sbjct: 113 CPNPGCITNTNEPV 126


>sp|PYRI_METB6|ASPARTATE carbamoyltransferase regulatory chain|Methanoregula boonei (strain

Query: 2 CPRPAC 7
CP P C
Sbjct: 121 CPNPGC 126


>sp|IF2G_METMA|TRANSLATION initiation factor 2 subunit|Methanosarcina mazei (strain ATCC

Query: 2 CPRPACEPV 10
CP P C V
Sbjct: 81 CPEPQCYTV 89


>sp|PYRI_SULAC|ASPARTATE carbamoyltransferase regulatory chain|Sulfolobus acidocaldarius

Query: 2 CPRPAC 7
CP P C
Sbjct: 113 CPNPYC 118


>sp|PYRI_METMJ|ASPARTATE carbamoyltransferase regulatory chain|Methanoculleus marisnigri

Query: 2 CPRPAC 7
CP P C
Sbjct: 113 CPNPGC 118


>sp|PYRI_STAMF|ASPARTATE carbamoyltransferase regulatory chain|Staphylothermus marinus

Query: 2 CPRPAC 7
CP P C
Sbjct: 116 CPNPTC 121


>sp|PYRI_METTH|ASPARTATE carbamoyltransferase regulatory chain|Methanothermobacter

Query: 2 CPRPAC 7
CP P C
Sbjct: 111 CPNPNC 116


>sp|PYRI_HALSA|ASPARTATE carbamoyltransferase regulatory chain|Halobacterium salinarum

Query: 2 CPRPAC 7
CP P C
Sbjct: 110 CPNPNC 115


>sp|IF2G_METAC|TRANSLATION initiation factor 2 subunit|Methanosarcina acetivorans (strain ATCC

Query: 2 CPRPACEPV 10
CP P C V
Sbjct: 93 CPAPQCYTV 101




31|Sequence|151|160|ACEPVYGPLT

>sp|GCSH_THEVO|PROBABLE glycine cleavage system H|Thermoplasma volcanium (strain ATCC

Query: 1 ACEPVYGPLT 10
+ E VY PLT
Sbjct: 65 SAEDVYSPLT 74


>sp|IF2P_PYRHO|PROBABLE translation initiation factor IF-2|Pyrococcus horikoshii (strain

Query: 4 PVYGPLT 10
P YGP+T
Sbjct: 33 PDYGPIT 39


>sp|Y213_METKA|UPF0282 protein MK0213|Methanopyrus kandleri (strain AV19 /

Query: 4 PVYGP 8
PVYGP
Sbjct: 189 PVYGP 193


>sp|SYT_NANEQ|THREONINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 4 PVYGPL 9
P+YGP+
Sbjct: 619 PLYGPM 624


>sp|PDXS_THEON|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermococcus onnurineus (strain

Query: 3 EPVYGPLT 10
EPVYG T
Sbjct: 220 EPVYGHYT 227


>sp|PDXS_THEGJ|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermococcus gammatolerans

Query: 3 EPVYGPLT 10
EPVYG T
Sbjct: 220 EPVYGHYT 227


>sp|G1PDH_PYRHO|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 VYGPLT 10
VYGP+T
Sbjct: 36 VYGPIT 41


>sp|TRM1_THEKO|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermococcus kodakarensis

Query: 3 EPVYGPL 9
EP+ GPL
Sbjct: 185 EPIRGPL 191


>sp|G1PDH_PYRAB|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrococcus abyssi (strain GE5 /

Query: 5 VYGPLT 10
VYGP+T
Sbjct: 36 VYGPVT 41


>sp|F16PA_METLZ|FRUCTOSE-1,6-BISPHOSPHATASE class 1|Methanocorpusculum labreanum (strain ATCC 43576

Query: 5 VYGPLT 10
+YGPLT
Sbjct: 163 LYGPLT 168


>sp|PDXS_THEKO|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermococcus kodakarensis

Query: 3 EPVYGPLT 10
EP+YG T
Sbjct: 220 EPIYGHYT 227


>sp|SPSS2_ARCFU|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ACEPVYG 7
C PVYG
Sbjct: 258 GCSPVYG 264


>sp|F16PA_METB6|FRUCTOSE-1,6-BISPHOSPHATASE class 1|Methanoregula boonei (strain DSM 21154

Query: 5 VYGPLT 10
+YGPLT
Sbjct: 140 LYGPLT 145


>sp|F16A1_HALMA|FRUCTOSE-1,6-BISPHOSPHATASE class 1 1|Haloarcula marismortui (strain ATCC 43049

Query: 5 VYGPLT 10
+YGP+T
Sbjct: 134 IYGPIT 139


>sp|PURQ_NATPD|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Natronomonas pharaonis (strain ATCC 35678

Query: 2 CEPVY 6
CEPVY
Sbjct: 111 CEPVY 115


>sp|GCSH_THEAC|PROBABLE glycine cleavage system H|Thermoplasma acidophilum (strain ATCC

Query: 1 ACEPVYGPLT 10
+ E VY P+T
Sbjct: 67 SAEDVYSPIT 76


>sp|AROC_HALLT|CHORISMATE synthase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 EPVYGPLT 10
EP+YG T
Sbjct: 304 EPIYGEAT 311




32|Sequence|156|165|YGPLTMSLKP

>sp|SYT_NANEQ|THREONINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 YGPLTMSLKP 10
YGP+ +SLKP
Sbjct: 621 YGPMKLSLKP 630


>sp|Y1154_METJA|UNCHARACTERIZED protein MJ1154|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PLTMSLKP 10
PL SLKP
Sbjct: 338 PLAQSLKP 345


>sp|CSG_METFV|CELL surface glycoprotein|Methanothermus fervidus (strain ATCC 43054

Query: 1 YGPLTMSLKP 10
Y LT++LKP
Sbjct: 506 YRELTITLKP 515


>sp|CSG_METSC|CELL surface glycoprotein|Methanothermus sociabilis

Query: 1 YGPLTMSLKP 10
Y LT++LKP
Sbjct: 506 YRELTITLKP 515


>sp|TRPD_PICTO|ANTHRANILATE phosphoribosyltransferase|Picrophilus torridus (strain ATCC 700027

Query: 2 GPLTMSLKP 10
GPLT L P
Sbjct: 173 GPLTNPLNP 181


>sp|F16PA_METB6|FRUCTOSE-1,6-BISPHOSPHATASE class 1|Methanoregula boonei (strain DSM 21154

Query: 1 YGPLTM 6
YGPLT+
Sbjct: 141 YGPLTL 146


>sp|SYT_METHJ|THREONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 YGPLTMSLKP 10
Y P +SLKP
Sbjct: 598 YTPRMLSLKP 607




33|Sequence|161|170|MSLKPQQQQQ

>sp|SYE_METTH|GLUTAMATE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 SLKPQQQQQ 10
SL P++QQQ
Sbjct: 59 SLSPEEQQQ 67


>sp|SYE_METTM|GLUTAMATE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 2 SLKPQQQQ 9
SLKP++QQ
Sbjct: 58 SLKPEEQQ 65




34|Sequence|166|175|QQQQQQQQQQ

***** No hits found ******


35|Sequence|171|180|QQQQQQQQQQ

***** No hits found ******


36|Sequence|176|185|QQQQQQQQQQ

***** No hits found ******


37|Sequence|181|190|QQQQQQQQPP

***** No hits found ******


38|Sequence|186|195|QQQPPPAAAN

>sp|TDXH1_PICTO|PEROXIREDOXIN 1|Picrophilus torridus (strain ATCC 700027

Query: 4 PPPAAAN 10
PPPA N
Sbjct: 186 PPPATQN 192




39|Sequence|191|200|PAAANVRKPG

>sp|PURP_METAR|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanocella arvoryzae (strain DSM

Query: 3 AANVRKP 9
AAN+RKP
Sbjct: 138 AANIRKP 144


>sp|SYM_PYRFU|METHIONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PAAANVRKP 9
PA VRKP
Sbjct: 533 PAGHKVRKP 541


>sp|SYM_PYRAB|METHIONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 PAAANVRKP 9
PA VRKP
Sbjct: 533 PAGHKVRKP 541


>sp|GYAR_THEON|GLYOXYLATE reductase|Thermococcus onnurineus (strain NA1)

Query: 5 NVRKPG 10
NVRKPG
Sbjct: 327 NVRKPG 332




40|Sequence|196|205|VRKPGGSGLL

>sp|TOP6B_HALSA|TYPE 2 DNA topoisomerase 6|Halobacterium salinarum (strain ATCC 700922

Query: 1 VRKPGGSGL 9
+ +PGGSGL
Sbjct: 598 LSQPGGSGL 606


>sp|TOP6B_HALS3|TYPE 2 DNA topoisomerase 6|Halobacterium salinarum (strain ATCC 29341

Query: 1 VRKPGGSGL 9
+ +PGGSGL
Sbjct: 598 LSQPGGSGL 606


>sp|TOP6B_NATPD|TYPE 2 DNA topoisomerase 6|Natronomonas pharaonis (strain ATCC 35678

Query: 3 KPGGSGL 9
+PGGSG+
Sbjct: 600 QPGGSGM 606


>sp|TOP6B_HALMA|TYPE 2 DNA topoisomerase 6|Haloarcula marismortui (strain ATCC 43049

Query: 3 KPGGSGL 9
+PGGSG+
Sbjct: 598 QPGGSGI 604


>sp|RS11_METJA|SMALL ribosomal subunit protein uS11|Methanocaldococcus jannaschii

Query: 1 VRKPGGSG 8
VR PGGSG
Sbjct: 78 VRAPGGSG 85


>sp|AROC_METS3|CHORISMATE synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 RKPGGSGL 9
RKPG SG+
Sbjct: 47 RKPGTSGV 54


>sp|PYCA_METJA|PYRUVATE carboxylase subunit A|Methanocaldococcus jannaschii (strain ATCC

Query: 2 RKPGGSGL 9
R PGG G+
Sbjct: 358 RSPGGPGV 365


>sp|RS11_METS3|SMALL ribosomal subunit protein uS11|Methanobrevibacter smithii (strain

Query: 1 VRKPGGSG 8
VR PGG+G
Sbjct: 76 VRAPGGNG 83


>sp|PRIS_HALWD|DNA primase small subunit PriS|Haloquadratum walsbyi (strain DSM 16790

Query: 5 GGSGLL 10
GGSGLL
Sbjct: 307 GGSGLL 312


>sp|RS11_METS5|SMALL ribosomal subunit protein uS11|Metallosphaera sedula (strain ATCC

Query: 1 VRKPGGSG 8
VR PGG+G
Sbjct: 78 VRAPGGAG 85


>sp|IF2G_AERPE|TRANSLATION initiation factor 2 subunit|Aeropyrum pernix (strain ATCC 700893

Query: 1 VRKPGG 6
VRKPGG
Sbjct: 261 VRKPGG 266


>sp|RS11_HYPBU|SMALL ribosomal subunit protein uS11|Hyperthermus butylicus (strain DSM

Query: 1 VRKPGGSG 8
VR PGG G
Sbjct: 79 VRAPGGHG 86


>sp|RS11_PICTO|SMALL ribosomal subunit protein uS11|Picrophilus torridus (strain ATCC

Query: 1 VRKPGGS 7
VR PGGS
Sbjct: 73 VRAPGGS 79


>sp|RS11_HALWD|SMALL ribosomal subunit protein uS11|Haloquadratum walsbyi (strain DSM

Query: 1 VRKPGGSG 8
VR PGG+G
Sbjct: 80 VRGPGGNG 87


>sp|RS11_AERPE|SMALL ribosomal subunit protein uS11|Aeropyrum pernix (strain ATCC

Query: 1 VRKPGGSG 8
VR PGG G
Sbjct: 79 VRAPGGHG 86


>sp|RS11_METKA|SMALL ribosomal subunit protein uS11|Methanopyrus kandleri (strain AV19

Query: 1 VRKPGGSG 8
VR PGG G
Sbjct: 83 VRAPGGHG 90


>sp|GLMA_THEKO|EXO-BETA-D-GLUCOSAMINIDASE kodakarensis (strain ATCC BAA-918

Query: 1 VRKPGGSGLL 10
VRK GGS ++
Sbjct: 609 VRKGGGSAVV 618




41|Sequence|201|210|GSGLLASPAA

>sp|RAMA_METBA|[CO(II) methylated amine-specific corrinoid protein]|Methanosarcina barkeri

Query: 2 SGLLASPAA 10
SG+LASP A
Sbjct: 207 SGMLASPGA 215


>sp|URE1_SULTO|UREASE subunit alpha|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 GSGLLASPA 9
G GL+A+P
Sbjct: 122 GEGLIATPG 130




42|Sequence|206|215|ASPAAAPSPS

>sp|PYLS_METBA|PYRROLYSINE--TRNA ligase|Methanosarcina barkeri

Query: 3 PAAAPSPS 10
PA+AP+PS
Sbjct: 147 PASAPAPS 154


>sp|PYLS_METAC|PYRROLYSINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 ASPAAAPSP 9
++PA AP+P
Sbjct: 138 SAPAQAPAP 146


>sp|PYLS_METBF|PYRROLYSINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 3 PAAAPSPS 10
P +AP+PS
Sbjct: 147 PTSAPAPS 154




43|Sequence|211|220|APSPSSSSVS

>sp|PYLS_METBU|PYRROLYSINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 PSPSSSSVS 10
PSP +SVS
Sbjct: 121 PSPKEASVS 129




44|Sequence|216|225|SSSVSSSSAT

***** No hits found ******


45|Sequence|221|230|SSSATAPSSV

>sp|Y397_ARCFU|UNCHARACTERIZED protein AF_0397|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SSSATAPSSV 10
+SSA+AP+SV
Sbjct: 155 ASSASAPTSV 164


>sp|NCPP_SACI4|PROBABLE inosine/xanthosine triphosphatase|Saccharolobus islandicus (strain

Query: 1 SSSATAPSSV 10
SSS T PSS+
Sbjct: 102 SSSFTLPSSM 111




46|Sequence|226|235|APSSVVAATS

>sp|CFBD_METAC|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanosarcina acetivorans

Query: 2 PSSVVAA 8
PSS+VAA
Sbjct: 13 PSSIVAA 19


>sp|SPSS1_METLZ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 1|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 APSSVVAAT 9
APS ++AAT
Sbjct: 222 APSGILAAT 230


>sp|CFBD_METBF|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanosarcina barkeri

Query: 2 PSSVVAA 8
PSS+VAA
Sbjct: 13 PSSIVAA 19




47|Sequence|231|240|VAATSGGGRP

>sp|CDPAS_NATPD|CDP-ARCHAEOL synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 VAATSGGGRP 10
VA +GGGRP
Sbjct: 22 VAVLAGGGRP 31


>sp|ACDE1_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Archaeoglobus

Query: 1 VAATSGGGRP 10
+AAT+G +P
Sbjct: 75 IAATAGSSKP 84


>sp|CDPAS_METB6|CDP-ARCHAEOL synthase|Methanoregula boonei (strain DSM 21154

Query: 1 VAATSGGGRP 10
VAA GGG P
Sbjct: 10 VAALCGGGTP 19


>sp|HIS6_METS3|IMIDAZOLE glycerol phosphate synthase subunit|Methanobrevibacter smithii

Query: 1 VAATSGGGRP 10
V A+ GGG P
Sbjct: 221 VIASGGGGNP 230


>sp|CDPAS_HALSA|CDP-ARCHAEOL synthase|Halobacterium salinarum (strain ATCC 700922

Query: 2 AATSGGGRP 10
A +GGGRP
Sbjct: 24 AVLAGGGRP 32


>sp|CDPAS_HALS3|CDP-ARCHAEOL synthase|Halobacterium salinarum (strain ATCC 29341

Query: 2 AATSGGGRP 10
A +GGGRP
Sbjct: 24 AVLAGGGRP 32


>sp|CDPAS_HALLT|CDP-ARCHAEOL synthase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 AATSGGGRP 10
A +GGGRP
Sbjct: 23 AVLAGGGRP 31


>sp|CDPAS_HALMA|CDP-ARCHAEOL synthase|Haloarcula marismortui (strain ATCC 43049

Query: 2 AATSGGGRP 10
A +GGGRP
Sbjct: 24 AVLAGGGRP 32


>sp|CDPAS_METHJ|CDP-ARCHAEOL synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 AATSGGGRP 10
AA +GGG P
Sbjct: 11 AALTGGGMP 19




48|Sequence|236|245|GGGRPGLGRG

>sp|SYA_METBF|ALANINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 GGGRPGLGRG 10
GGG+P L G
Sbjct: 890 GGGKPALAMG 899


>sp|NTPTH_STAMF|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Staphylothermus marinus (strain ATCC 43588

Query: 3 GRPGLGR 9
GRPG+G+
Sbjct: 8 GRPGIGK 14


>sp|DNLI_METTH|DNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 GRPGLGR 9
G PGLGR
Sbjct: 210 GEPGLGR 216


>sp|DNLI_METTF|DNA ligase|Methanothermobacter thermautotrophicus (Methanobacterium

Query: 3 GRPGLGR 9
G PGLGR
Sbjct: 210 GEPGLGR 216


>sp|MTMB2_METBA|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina barkeri

Query: 2 GGRPGLG 8
GRPG+G
Sbjct: 194 AGRPGMG 200


>sp|MTMB2_METBF|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina barkeri (strain Fusaro /

Query: 2 GGRPGLG 8
GRPG+G
Sbjct: 194 AGRPGMG 200


>sp|MTMB1_METBF|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina barkeri (strain Fusaro /

Query: 2 GGRPGLG 8
GRPG+G
Sbjct: 194 AGRPGMG 200


>sp|MTMB1_METBA|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina barkeri

Query: 2 GGRPGLG 8
GRPG+G
Sbjct: 194 AGRPGMG 200


>sp|ALAXL_PYRHO|ALANYL-TRNA editing protein AlaX-L|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GGGRPG 6
GGG+PG
Sbjct: 42 GGGQPG 47


Query: 1 GGGRPGLGRG 10
GGG L RG
Sbjct: 372 GGGTDNLARG 381


>sp|MTMB3_METBF|MONOMETHYLAMINE methyltransferase MtmB3|Methanosarcina barkeri (strain Fusaro /

Query: 2 GGRPGLG 8
GRPG+G
Sbjct: 194 AGRPGMG 200


>sp|MTMB1_METAC|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina acetivorans (strain ATCC

Query: 2 GGRPGLG 8
GRPG+G
Sbjct: 194 AGRPGMG 200


>sp|MTMB_METMA|MONOMETHYLAMINE methyltransferase MtmB|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GGRPGLG 8
GRPG+G
Sbjct: 194 AGRPGMG 200


>sp|GAD_PICTO|D-GLUCONATE/D-GALACTONATE dehydratase|Picrophilus torridus (strain ATCC 700027

Query: 3 GRPGLG 8
G+PGLG
Sbjct: 353 GKPGLG 358


>sp|RFCL_METHJ|REPLICATION factor C large subunit|Methanospirillum hungatei JF-1 (strain

Query: 3 GRPGLGR 9
G+PG+G+
Sbjct: 43 GKPGIGK 49


>sp|RFCL_METB6|REPLICATION factor C large subunit|Methanoregula boonei (strain DSM 21154

Query: 3 GRPGLGR 9
G+PG+G+
Sbjct: 43 GKPGIGK 49


>sp|NTPTH_SULAC|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 GRPGLGR 9
G+PG+G+
Sbjct: 11 GKPGIGK 17


>sp|ENGB_HALLT|PROBABLE GTP-binding protein EngB|Halorubrum lacusprofundi (strain ATCC

Query: 2 GGRPGLGR 9
GG+PG+ R
Sbjct: 37 GGKPGVTR 44


>sp|PYRH_METST|URIDYLATE kinase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 GGGRPG 6
GGGRP
Sbjct: 42 GGGRPA 47


>sp|SYV_HALSA|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 GGRPG 6
GGRPG
Sbjct: 558 GGRPG 562


>sp|SYV_HALS3|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 2 GGRPG 6
GGRPG
Sbjct: 558 GGRPG 562


>sp|HTPX_METTH|PROTEASE HtpX homolog|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 GRPGLGRG 10
GRP GRG
Sbjct: 244 GRPETGRG 251


>sp|SYC_METMP|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 GGGRPG 6
G GRPG
Sbjct: 198 GSGRPG 203


>sp|RFCL_METLZ|REPLICATION factor C large subunit|Methanocorpusculum labreanum (strain ATCC

Query: 3 GRPGLGR 9
G+PG+G+
Sbjct: 43 GKPGIGK 49


>sp|PUR7_ARCFU|PUTATIVE phosphoribosylaminoimidazole-succinocarboxamide

Query: 4 RPGLGR 9
+PGLGR
Sbjct: 16 KPGLGR 21


>sp|KAD_NATPD|ADENYLATE kinase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 GRPGLGRG 10
G PG G+G
Sbjct: 10 GAPGAGKG 17


>sp|HDRD_METBF|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina barkeri

Query: 2 GGRPGLG 8
GG+PGL
Sbjct: 41 GGKPGLA 47


>sp|PPSA_PYRHO|PROBABLE phosphoenolpyruvate synthase|Pyrococcus horikoshii (strain ATCC

Query: 2 GGRPGLGRG 10
G PG+G G
Sbjct: 387 GASPGIGAG 395


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 GGGRPG 6
GGG+PG
Sbjct: 550 GGGQPG 555


>sp|NTPTH_ARCFU|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 GRPGLGR 9
GRPG+G+
Sbjct: 7 GRPGVGK 13


>sp|CAS6_HALMT|CRISPR-ASSOCIATED endoribonuclease Cas6|Haloferax mediterranei (strain ATCC 33500

Query: 2 GGRPGLGRG 10
GGR GLG G
Sbjct: 240 GGRNGLGFG 248


>sp|AROA_AERPE|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 2 GGRPGLGRG 10
GG+P LGRG
Sbjct: 66 GGKPRLGRG 74


>sp|PPSA_PYRAB|PROBABLE phosphoenolpyruvate synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 GGRPGLGRG 10
G PG+G G
Sbjct: 384 GASPGIGAG 392


>sp|PPSA_PYRFU|PHOSPHOENOLPYRUVATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 GGRPGLGRG 10
G PG+G G
Sbjct: 385 GASPGIGAG 393


>sp|COFH_METKA|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanopyrus kandleri (strain AV19 /

Query: 1 GGGRPGL 7
GG RPG+
Sbjct: 267 GGARPGV 273


>sp|SYA_PYRAR|ALANINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 GGGRPG 6
GGG+PG
Sbjct: 534 GGGQPG 539


>sp|KAD_HALSA|ADENYLATE kinase|Halobacterium salinarum (strain ATCC 700922

Query: 3 GRPGLGRG 10
G PG G+G
Sbjct: 10 GAPGAGKG 17


>sp|KAD_HALS3|ADENYLATE kinase|Halobacterium salinarum (strain ATCC 29341

Query: 3 GRPGLGRG 10
G PG G+G
Sbjct: 10 GAPGAGKG 17


>sp|ASSY_ARCFU|ARGININOSUCCINATE synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GGRPGLGR 9
GG+ G+GR
Sbjct: 242 GGKHGVGR 249


>sp|KAD_HALMA|ADENYLATE kinase|Haloarcula marismortui (strain ATCC 43049

Query: 3 GRPGLGRG 10
G PG G+G
Sbjct: 10 GPPGAGKG 17


>sp|FOR_THELN|TUNGSTEN-CONTAINING formaldehyde ferredoxin oxidoreductase|Thermococcus litoralis

Query: 1 GGGRPGLG 8
GRPG+G
Sbjct: 181 AAGRPGMG 188


>sp|KAD_METMA|ADENYLATE kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 GRPGLGRG 10
G PG G+G
Sbjct: 7 GPPGAGKG 14


>sp|KAD_METBF|ADENYLATE kinase|Methanosarcina barkeri (strain Fusaro /

Query: 3 GRPGLGRG 10
G PG G+G
Sbjct: 7 GPPGAGKG 14




49|Sequence|241|250|GLGRGRNSNK

>sp|ARLY_SULAC|ARGININOSUCCINATE lyase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 GLGRGRNSN 9
GLGR RN +
Sbjct: 93 GLGRSRNDH 101


>sp|ARLY_SACS2|ARGININOSUCCINATE lyase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 GLGRGRNSN 9
GLGR RN +
Sbjct: 92 GLGRSRNDH 100


>sp|ARLY_PYRNV|ARGININOSUCCINATE lyase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 GLGRGRNSN 9
GLGR RN +
Sbjct: 98 GLGRSRNDH 106


>sp|ARLY_PYRIL|ARGININOSUCCINATE lyase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 GLGRGRNSN 9
GLGR RN +
Sbjct: 98 GLGRSRNDH 106


>sp|ARLY_PYRAE|ARGININOSUCCINATE lyase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GLGRGRNSN 9
GLGR RN +
Sbjct: 98 GLGRSRNDH 106


>sp|ARLY_PYRCJ|ARGININOSUCCINATE lyase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 GLGRGRNSN 9
GLGR RN +
Sbjct: 98 GLGRSRNDH 106


>sp|SYR_HALWD|ARGININE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 LGRGRNS 8
+GRGRN+
Sbjct: 135 VGRGRNT 141


>sp|WTPB_PYRFU|MOLYBDATE/TUNGSTATE transport system permease protein|Pyrococcus furiosus (strain ATCC

Query: 2 LGRGRNS 8
+GRGRN+
Sbjct: 243 VGRGRNA 249


>sp|GLMS_METMA|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Methanosarcina mazei (strain ATCC

Query: 1 GLGRGRN 7
GLG+G N
Sbjct: 190 GLGKGEN 196


>sp|PDAD_PICTO|PYRUVOYL-DEPENDENT arginine decarboxylase|Picrophilus torridus (strain ATCC 700027

Query: 1 GLGRGR 6
G+GRGR
Sbjct: 14 GIGRGR 19


>sp|SRP54_METKA|SIGNAL recognition particle 54 kDa|Methanopyrus kandleri (strain AV19 /

Query: 1 GLGRGRNSNK 10
G+G GRN K
Sbjct: 350 GMGGGRNVRK 359


>sp|GLMS_METAC|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Methanosarcina acetivorans (strain

Query: 1 GLGRGRN 7
GLG+G N
Sbjct: 190 GLGKGEN 196




50|Sequence|246|255|RNSNKGLPQS

>sp|PUR2_METAR|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 RNSNKGLPQ 9
RN+ KGLP+
Sbjct: 115 RNNIKGLPK 123


>sp|HTPX2_SULAC|PROTEASE HtpX homolog 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 RNSNKGL 7
RNSN GL
Sbjct: 178 RNSNSGL 184


>sp|SYV_METMP|VALINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 3 SNKGLP 8
SNKG+P
Sbjct: 748 SNKGMP 753


>sp|GSA_HALLT|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 SNKGLPQS 10
S KG+P+S
Sbjct: 161 STKGIPES 168


>sp|Y1200_PYRAB|UNCHARACTERIZED ATP-binding protein PYRAB12000|Pyrococcus abyssi (strain GE5 /

Query: 1 RNSNKGLP 8
+NS KG+P
Sbjct: 82 KNSYKGIP 89


>sp|PRIL_PYRHO|DNA primase large subunit PriL|Pyrococcus horikoshii (strain ATCC

Query: 1 RNSNKGLPQ 9
+N+ KG+PQ
Sbjct: 233 KNALKGVPQ 241


>sp|PRIL_PYRAB|DNA primase large subunit PriL|Pyrococcus abyssi (strain GE5 /

Query: 1 RNSNKGLPQ 9
+N+ KG+PQ
Sbjct: 232 KNALKGVPQ 240




51|Sequence|251|260|GLPQSTISFD

>sp|DNAK_METBU|CHAPERONE protein DnaK|Methanococcoides burtonii (strain DSM 6242

Query: 1 GLPQSTISFD 10
GLPQ ++FD
Sbjct: 442 GLPQIEVTFD 451


>sp|DNAK_METTP|CHAPERONE protein DnaK|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 443 GIPQIEVTFD 452


>sp|DNAK_METAR|CHAPERONE protein DnaK|Methanocella arvoryzae (strain DSM 22066

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 439 GIPQIEVTFD 448


>sp|DNAK_METMZ|CHAPERONE protein DnaK|Methanosarcina mazei (Methanosarcina frisia)

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 442 GIPQIEVTFD 451


>sp|DNAK_METMA|CHAPERONE protein DnaK|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 442 GIPQIEVTFD 451


>sp|DNAK_METAC|CHAPERONE protein DnaK|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 442 GIPQIEVAFD 451


>sp|DNAK_METBF|CHAPERONE protein DnaK|Methanosarcina barkeri (strain Fusaro /

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 442 GIPQIEVTFD 451


>sp|SYA_PYRIL|ALANINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 GLPQSTISF 9
G+PQ I+F
Sbjct: 174 GIPQDEITF 182


>sp|DNAK_THEVO|CHAPERONE protein DnaK|Thermoplasma volcanium (strain ATCC 51530

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 445 GIPQIEVTFD 454


>sp|DNAK_METTE|CHAPERONE protein DnaK|Methanosarcina thermophila

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 442 GVPQIEVTFD 451


>sp|DNAK_THEAC|CHAPERONE protein DnaK|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 444 GVPQIEVTFD 453


>sp|DNAK_METTH|CHAPERONE protein DnaK|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 447 GVPQIEVTFD 456


>sp|DNAK_PICTO|CHAPERONE protein DnaK|Picrophilus torridus (strain ATCC 700027

Query: 1 GLPQSTISFD 10
G+PQ ++FD
Sbjct: 444 GVPQIEVTFD 453


>sp|Y1542_METJA|UNCHARACTERIZED protein MJ1542|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PQSTISF 9
PQ+T+SF
Sbjct: 623 PQNTLSF 629


>sp|SLAB_ACIAM|S-LAYER protein B|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 2 LPQSTISFD 10
LP ST+ +D
Sbjct: 320 LPNSTVPYD 328


>sp|DNAK_NITMS|CHAPERONE protein DnaK|Nitrosopumilus maritimus (strain SCM1)

Query: 1 GLPQSTISFD 10
G+PQ + FD
Sbjct: 446 GVPQIEVKFD 455


>sp|DNAK_CENSY|CHAPERONE protein DnaK|Cenarchaeum symbiosum (strain A)

Query: 1 GLPQSTISFD 10
G+PQ + FD
Sbjct: 445 GIPQIEVKFD 454




52|Sequence|256|265|TISFDGIYAN

>sp|SYR_PYRIL|ARGININE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 TISFDGIYAN 10
+IS DG+Y N
Sbjct: 70 SISVDGLYLN 79


>sp|ADH_SULSR|NAD-DEPENDENT alcohol dehydrogenase|Sulfolobus sp. (strain RC3)

Query: 2 ISFDGIYA 9
I+FDG YA
Sbjct: 120 INFDGAYA 127


>sp|ADH_SACS2|NAD-DEPENDENT alcohol dehydrogenase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 ISFDGIYA 9
I+FDG YA
Sbjct: 120 INFDGAYA 127


>sp|SYI_PICTO|ISOLEUCINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 ISFDGIY 8
I+FDGIY
Sbjct: 898 INFDGIY 904


>sp|Y1356_METJA|UNCHARACTERIZED protein MJ1356|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 ISFDGIY 8
++FDGIY
Sbjct: 3 VTFDGIY 9


>sp|FTRL_ARCFU|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase-like protein|Archaeoglobus fulgidus (strain

Query: 3 SFDGIYA 9
+FDGIY+
Sbjct: 16 AFDGIYS 22


>sp|SFSA_THEAC|SUGAR fermentation stimulation protein homolog|Thermoplasma acidophilum

Query: 1 TISFDGIY 8
T FDG+Y
Sbjct: 194 TFGFDGLY 201


>sp|SYR_PYRAE|ARGININE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 TISFDGIYAN 10
++S DG+Y N
Sbjct: 70 SLSVDGLYLN 79


>sp|FURH_ARCFU|FERRIC uptake regulation protein homolog|Archaeoglobus fulgidus (strain

Query: 1 TISFDGIYAN 10
T+SF +Y+N
Sbjct: 51 TMSFSTLYSN 60


>sp|SURE_THEKO|5'-NUCLEOTIDASE SurE|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 5 DGIYAN 10
DGIY+N
Sbjct: 9 DGIYSN 14


>sp|RL2_PICTO|LARGE ribosomal subunit protein uL2|Picrophilus torridus (strain ATCC

Query: 2 ISFDGIYAN 10
I+F+G Y N
Sbjct: 65 IAFNGAYVN 73


>sp|ADH_SULTO|NAD-DEPENDENT alcohol dehydrogenase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 ISFDGIYA 9
I++DG YA
Sbjct: 120 INYDGAYA 127


>sp|SURE_THEGJ|5'-NUCLEOTIDASE SurE|Thermococcus gammatolerans (strain DSM 15229

Query: 5 DGIYAN 10
DGIY+N
Sbjct: 9 DGIYSN 14


>sp|SURE_METM7|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain C7 /

Query: 5 DGIYAN 10
DGIY+N
Sbjct: 11 DGIYSN 16


>sp|SURE_METM6|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain C6 /

Query: 5 DGIYAN 10
DGIY+N
Sbjct: 11 DGIYSN 16


>sp|SURE_METMP|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain DSM 14266

Query: 5 DGIYAN 10
DGIY+N
Sbjct: 9 DGIYSN 14


>sp|SURE_METVS|5'-NUCLEOTIDASE SurE|Methanococcus vannielii (strain ATCC 35089

Query: 5 DGIYAN 10
DGIY+N
Sbjct: 11 DGIYSN 16


>sp|SURE_METM5|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain C5 /

Query: 5 DGIYAN 10
DGIY+N
Sbjct: 11 DGIYSN 16




53|Sequence|261|270|GIYANMRMVH

>sp|AGOG_PYRFU|N-GLYCOSYLASE/DNA lyase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GIYANMRMV 9
G Y NM+M+
Sbjct: 121 GYYKNMKML 129


>sp|HICDH_PYRHO|ISOCITRATE/HOMOISOCITRATE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 IYANMRMV 9
+YAN+R++
Sbjct: 91 LYANLRII 98


>sp|Y427_METAR|UPF0173 metal-dependent hydrolase UNCMA_04270|Methanocella arvoryzae

Query: 1 GIYANMRMVH 10
G++++M +VH
Sbjct: 144 GLFSDMALVH 153




54|Sequence|266|275|MRMVHILTSV

>sp|Y053_NANEQ|UNCHARACTERIZED RNA methyltransferase NEQ053|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 RMVHILT 8
RM+HI+T
Sbjct: 211 RMIHIIT 217




55|Sequence|271|280|ILTSVVGSKC

>sp|ENO_METTH|ENOLASE thermautotrophicus (strain ATCC 29096

Query: 2 LTSVVGSKC 10
LTS+VG +C
Sbjct: 295 LTSLVGDRC 303


>sp|ENO_METAR|ENOLASE arvoryzae (strain DSM 22066

Query: 2 LTSVVGSKC 10
LT +VG +C
Sbjct: 283 LTEMVGDRC 291


>sp|RGYR1_SULAC|REVERSE gyrase 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 ILTSVVGSK 9
ILTS+VG K
Sbjct: 298 ILTSLVGFK 306




56|Sequence|276|285|VGSKCEVQVK

>sp|Y932_METKA|UNCHARACTERIZED protein MK0932|Methanopyrus kandleri (strain AV19 /

Query: 1 VGSKCEVQV 9
VG++CEV++
Sbjct: 483 VGTECEVEI 491


>sp|KHSE_PYRAE|HOMOSERINE kinase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 VGSKCEVQVK 10
VGS C V VK
Sbjct: 32 VGSGCGVHVK 41


>sp|Y586_ARCFU|UNCHARACTERIZED protein AF_0586|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GSKCEVQVK 10
G KC V+VK
Sbjct: 125 GEKCRVEVK 133


>sp|AROD_IGNH4|3-DEHYDROQUINATE dehydratase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 GSKCEVQVK 10
G+ C+V+VK
Sbjct: 88 GAVCDVEVK 96


>sp|IF2G_NATPD|TRANSLATION initiation factor 2 subunit|Natronomonas pharaonis (strain ATCC

Query: 4 KCEVQVK 10
+CEVQ+K
Sbjct: 373 ECEVQLK 379




57|Sequence|281|290|EVQVKNGGIY

>sp|RL1_PYRNV|LARGE ribosomal subunit protein uL1|Pyrobaculum neutrophilum (strain

Query: 1 EVQVKNGGI 9
EVQ KN G+
Sbjct: 72 EVQAKNAGV 80


>sp|SERK_DESM0|ATP-DEPENDENT L-serine kinase|Desulfurococcus mucosus (strain ATCC 35584

Query: 4 VKNGGIY 10
V+NGG+Y
Sbjct: 225 VRNGGVY 231


>sp|HUTI_PYRAR|IMIDAZOLONEPROPIONASE arsenaticum (strain DSM 13514

Query: 1 EVQVKNGGIY 10
E+ K GGIY
Sbjct: 96 EITRKGGGIY 105


>sp|MUTL_METTP|DNA mismatch repair protein MutL|Methanothrix thermoacetophila

Query: 2 VQVKNGGI 9
++V+NGGI
Sbjct: 45 IEVENGGI 52


>sp|HISX_PICTO|HISTIDINOL dehydrogenase|Picrophilus torridus (strain ATCC 700027

Query: 1 EVQVKNGGIY 10
++ +KNG IY
Sbjct: 77 KINIKNGSIY 86


>sp|HIS7_CALMQ|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 VQVKNGGI 9
+QVK GG+
Sbjct: 178 IQVKGGGV 185


>sp|EF2_METKA|ELONGATION factor 2|Methanopyrus kandleri (strain AV19 /

Query: 1 EVQVKNG 7
EV+VKNG
Sbjct: 111 EVEVKNG 117


>sp|WTPA_THEKO|MOLYBDATE/TUNGSTATE-BINDING protein WtpA|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 EVQVKNGGI 9
E+QVKN I
Sbjct: 207 EIQVKNNRI 215


>sp|GLPK1_SULAC|GLYCEROL kinase 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 VKNGGIY 10
V NGG+Y
Sbjct: 330 VDNGGVY 336


>sp|Y2269_METMJ|UPF0210 protein Memar_2269|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 QVKNGGI 9
QVK GGI
Sbjct: 315 QVKKGGI 321


>sp|RRP4_METBU|EXOSOME complex component Rrp4|Methanococcoides burtonii (strain DSM 6242

Query: 4 VKNGGIY 10
VKNG IY
Sbjct: 25 VKNGNIY 31


>sp|TLDD_SACS2|ZINC metalloprotease TldD homolog|Saccharolobus solfataricus (strain

Query: 2 VQVKNGG 8
VQV NGG
Sbjct: 423 VQVSNGG 429


>sp|Y2001_METTM|UNCHARACTERIZED protein MTBMA_p00010|Methanothermobacter marburgensis (strain ATCC

Query: 2 VQVKNGG 8
+Q+KNGG
Sbjct: 541 LQLKNGG 547




58|Sequence|286|295|NGGIYEGVFK

>sp|GATE_THEAC|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Thermoplasma acidophilum (strain ATCC

Query: 1 NGGIYEGVFK 10
+GG+Y G+ K
Sbjct: 292 SGGVYAGILK 301


>sp|PSA_METS3|PROTEASOME subunit alpha|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 GGIYEGVFK 10
GG+Y+G+ K
Sbjct: 140 GGVYDGICK 148


>sp|CDC62_ARCFU|ORC1-TYPE DNA replication protein 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 GIYEGVF 9
G YEGVF
Sbjct: 225 GFYEGVF 231


>sp|SYI_METKA|ISOLEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 NGGIYEGVF 9
+GG YEG++
Sbjct: 374 DGGKYEGLY 382


>sp|DUT_METJA|DEOXYURIDINE 5'-triphosphate nucleotidohydrolase|Methanocaldococcus jannaschii

Query: 3 GIYEGVFK 10
G+YEG++K
Sbjct: 147 GVYEGIYK 154


>sp|RACD_PYRHO|ASPARTATE racemase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 GIYEGV 8
GIYEGV
Sbjct: 158 GIYEGV 163


>sp|SYI_METHJ|ISOLEUCINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 GGIYEGVF 9
GGIY G F
Sbjct: 357 GGIYAGQF 364


>sp|ASSY_PYRAE|ARGININOSUCCINATE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 GIYEGVF 9
G+YEGV+
Sbjct: 81 GMYEGVY 87


>sp|MTRB_METVS|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit B|Methanococcus vannielii (strain

Query: 2 GGIYEGVF 9
GG+++G+F
Sbjct: 74 GGLFQGMF 81


>sp|GATD_PYRAE|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrobaculum aerophilum (strain ATCC

Query: 1 NGGIYEGV 8
NG ++EGV
Sbjct: 11 NGDVFEGV 18


>sp|FAEHP_METMJ|BIFUNCTIONAL enzyme Fae/Hps|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 GGIYEGVFK 10
GGI +GV K
Sbjct: 338 GGIRQGVVK 346


>sp|SURE_CALMQ|5'-NUCLEOTIDASE SurE|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 NGGIYEG 7
NGG+Y G
Sbjct: 57 NGGLYNG 63


>sp|RFCL_HALMA|REPLICATION factor C large subunit|Haloarcula marismortui (strain ATCC 43049

Query: 1 NGGIYEG 7
+GG++EG
Sbjct: 429 SGGVFEG 435


>sp|ASSY_SACS2|ARGININOSUCCINATE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 GIYEGVF 9
G+YEGV+
Sbjct: 78 GLYEGVY 84


>sp|PDXT_STAMF|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Staphylothermus marinus

Query: 1 NGGIYEGVF 9
GG+YE V+
Sbjct: 9 QGGVYEHVY 17


>sp|DUT_ARCFU|PROBABLE deoxyuridine 5'-triphosphate nucleotidohydrolase|Archaeoglobus

Query: 5 YEGVFK 10
YEGV+K
Sbjct: 157 YEGVYK 162


>sp|PDXT_AERPE|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Aeropyrum pernix (strain ATCC

Query: 2 GGIYEGVF 9
GG+YE V+
Sbjct: 10 GGVYEHVY 17


>sp|FAU1_SULAC|PROBABLE ribonuclease FAU-1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 NGGIYEGV 8
+GGIY+G+
Sbjct: 306 SGGIYDGL 313




59|Sequence|291|300|EGVFKTYSPK

>sp|AMTAB_PYRAB|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 2 GVFKTYSPK 10
GV K+YSP+
Sbjct: 162 GVLKSYSPE 170


>sp|AMTAB_PYRHO|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 2 GVFKTYSPK 10
GV K+YSP+
Sbjct: 162 GVLKSYSPE 170


>sp|NPD_SULAC|NAD-DEPENDENT protein deacetylase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 EGVFKTYSPK 10
+G++K YSP+
Sbjct: 41 QGLWKKYSPE 50


>sp|NPD_SACS2|NAD-DEPENDENT protein deacetylase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 EGVFKTYSPK 10
+G++K YSP+
Sbjct: 37 QGLWKKYSPE 46


>sp|CISY_THEAC|CITRATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 VFKTYSPK 10
V+KTY P+
Sbjct: 265 VYKTYDPR 272


>sp|PURA_PICTO|ADENYLOSUCCINATE synthetase|Picrophilus torridus (strain ATCC 700027

Query: 2 GVFKTYSPK 10
GVFK Y+ K
Sbjct: 254 GVFKAYTTK 262


>sp|CISY_PYRFU|CITRATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 VFKTYSPK 10
V+KTY P+
Sbjct: 265 VYKTYDPR 272


>sp|NPD_SULTO|NAD-DEPENDENT protein deacetylase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GVFKTYSPK 10
G++K YSP+
Sbjct: 38 GLWKKYSPE 46


>sp|SYP_METKA|PROLINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 GVFKTYSPK 10
G+F+T SP+
Sbjct: 412 GIFRTDSPE 420


>sp|CISY_SACS2|CITRATE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 VFKTYSPK 10
V+KTY P+
Sbjct: 260 VYKTYDPR 267


>sp|HDRA_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit A|Methanococcus

Query: 1 EGVFKTYSPK 10
EG FK PK
Sbjct: 515 EGFFKELHPK 524


>sp|Y1416_METJA|UNCHARACTERIZED protein MJ1416|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EGVFKTYSPK 10
E V+KT +PK
Sbjct: 326 EKVYKTINPK 335


>sp|Y1335_ARCFU|UNCHARACTERIZED protein AF_1335|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GVFKTYSPK 10
GV+KT++ K
Sbjct: 17 GVYKTFANK 25


>sp|SYV_SACS2|VALINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 FKTYSPK 10
+KTY PK
Sbjct: 181 YKTYEPK 187


>sp|RTCB_METJA|TRNA-SPLICING ligase RtcB|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GVFKTYSP 9
VFK Y+P
Sbjct: 374 AVFKNYTP 381


>sp|GATE_SULTO|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Sulfurisphaera tokodaii (strain DSM

Query: 1 EGVFKTYSPK 10
E + K YSPK
Sbjct: 489 EELVKKYSPK 498


>sp|Y3544_METJA|UNCHARACTERIZED protein MJECL44|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EGVFKTY 7
+G+FKTY
Sbjct: 144 DGLFKTY 150




60|Sequence|296|305|TYSPKCDLVL

>sp|GATD_METBU|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanococcoides burtonii (strain DSM

Query: 1 TYSPKCDLV 9
T PKC LV
Sbjct: 284 TLEPKCSLV 292


>sp|NADM_SULTO|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 YSPKCDLVL 10
YSPK D+V+
Sbjct: 91 YSPKFDVVV 99


>sp|PDXT_NATPD|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Natronomonas pharaonis (strain

Query: 4 PKCDLVL 10
P+CDL+L
Sbjct: 43 PECDLLL 49


>sp|ACDA2_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus

Query: 2 YSPKCDL 8
Y+P CD+
Sbjct: 61 YAPACDM 67


>sp|Y1307_METLZ|UPF0179 protein Mlab_1307|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 TYSPKCDLVL 10
TY+P CD V
Sbjct: 96 TYTPVCDDVF 105


>sp|RL44E_AERPE|LARGE ribosomal subunit protein eL42|Aeropyrum pernix (strain ATCC

Query: 1 TYSPKCD 7
TY P+C+
Sbjct: 9 TYCPRCN 15


>sp|SYL_METJA|LEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YSPKCD 7
Y P+CD
Sbjct: 181 YCPRCD 186


>sp|RL44E_DESA1|LARGE ribosomal subunit protein eL42|Desulfurococcus amylolyticus

Query: 1 TYSPKC 6
TY PKC
Sbjct: 16 TYCPKC 21


>sp|DP2L_THEKO|DNA polymerase II large subunit|Thermococcus kodakarensis (strain ATCC

Query: 4 PKCDLVL 10
PKCD+ L
Sbjct: 760 PKCDVEL 766


>sp|TRMJ_SULAC|TRNA (cytidine-2'-O-)-methyltransferase TrmJ|Sulfolobus acidocaldarius

Query: 3 SPKCDL 8
+PKCD+
Sbjct: 35 NPKCDI 40


>sp|MSRA_SACS2|PEPTIDE methionine sulfoxide reductase MsrA|Saccharolobus solfataricus

Query: 2 YSPKCDLVL 10
Y+P C LV+
Sbjct: 149 YNPYCRLVI 157




61|Sequence|301|310|CDLVLDAAHE

>sp|TRUA_METJA|TRNA pseudouridine synthase A|Methanocaldococcus jannaschii (strain

Query: 1 CDLVLDAAHE 10
CD++LDA E
Sbjct: 24 CDILLDALEE 33


>sp|LONB_ARCFU|ARCHAEAL Lon protease|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 DLVLDAAHE 10
D++LDA HE
Sbjct: 573 DVLLDAEHE 581


>sp|RL10E_METST|LARGE ribosomal subunit protein uL16|Methanosphaera stadtmanae (strain

Query: 1 CDLVLDAAHE 10
C LV+D H+
Sbjct: 148 CKLVIDKGHD 157


>sp|6PGD_HALVD|6-PHOSPHOGLUCONATE dehydrogenase, NAD(+)-dependent, decarboxylating|Haloferax

Query: 1 CDLVLDAAHE 10
D VLDA HE
Sbjct: 16 VDRVLDAGHE 25


>sp|LONB_THEVO|ARCHAEAL Lon protease|Thermoplasma volcanium (strain ATCC 51530

Query: 2 DLVLDAAH 9
D++LDA H
Sbjct: 589 DIILDAEH 596


>sp|VORB_METTM|KETOISOVALERATE oxidoreductase subunit VorB|Methanothermobacter marburgensis

Query: 1 CDLVLDA 7
CDL +DA
Sbjct: 147 CDLTMDA 153


>sp|Y535_METJA|UNCHARACTERIZED protein MJ0535|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CDLVLDAA 8
CD LDAA
Sbjct: 86 CDRTLDAA 93


>sp|DTDA_HALSA|D-AMINOACYL-TRNA deacylase|Halobacterium salinarum (strain ATCC 700922

Query: 2 DLVLDAAH 9
D VLDAAH
Sbjct: 307 DAVLDAAH 314


>sp|DTDA_HALS3|D-AMINOACYL-TRNA deacylase|Halobacterium salinarum (strain ATCC 29341

Query: 2 DLVLDAAH 9
D VLDAAH
Sbjct: 307 DAVLDAAH 314


>sp|DYRB_HALVO|DIHYDROFOLATE reductase HdrB|Haloferax volcanii (Halobacterium volcanii)

Query: 5 LDAAHE 10
LDAAHE
Sbjct: 143 LDAAHE 148


>sp|HEM12_PYRAR|GLUTAMYL-TRNA reductase 2|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 CDLVLDAAH 9
CD+V A H
Sbjct: 233 CDVVFSAVH 241


>sp|LONB_THEAC|ARCHAEAL Lon protease|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 DLVLDAAH 9
D++LDA H
Sbjct: 589 DIILDADH 596


>sp|PTH_METJA|PEPTIDYL-TRNA hydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CDLVLDAAH 9
C ++ DA H
Sbjct: 76 CSIIRDAGH 84


>sp|ARLY_METMA|ARGININOSUCCINATE lyase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 DLVLDAAH 9
D+V+D AH
Sbjct: 35 DIVVDLAH 42


>sp|DMSA_HALSA|PUTATIVE dimethyl sulfoxide reductase catalytic|Halobacterium salinarum

Query: 2 DLVLDAAH 9
D++L AAH
Sbjct: 545 DIILPAAH 552




62|Sequence|306|315|DAAHEKSTES

>sp|AATD_METAC|A-TYPE ATP synthase subunit D|Methanosarcina acetivorans (strain ATCC

Query: 1 DAAHEKSTE 9
DAA+EKSTE
Sbjct: 56 DAAYEKSTE 64


>sp|PAN2_HALVD|PROTEASOME-ACTIVATING nucleotidase 2|Haloferax volcanii (strain ATCC 29605

Query: 1 DAAHEK 6
DAAHEK
Sbjct: 387 DAAHEK 392


>sp|AATD_METMA|A-TYPE ATP synthase subunit D|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 DAAHEKSTE 9
DAA KSTE
Sbjct: 56 DAAFAKSTE 64




63|Sequence|311|320|KSTESSSGPK

>sp|TRM1_PYRNV|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrobaculum neutrophilum

Query: 4 ESSSGP 9
ESSSGP
Sbjct: 254 ESSSGP 259




64|Sequence|316|325|SSGPKREEIM

>sp|GCH3_PYRIL|GTP cyclohydrolase III|Pyrobaculum islandicum (strain DSM 4184

Query: 1 SSGPKREEIM 10
S GP+RE I+
Sbjct: 18 SLGPRREHII 27


>sp|GCH3_PYRCJ|GTP cyclohydrolase III|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 SSGPKREEIM 10
S GP+RE I+
Sbjct: 18 SLGPRREHII 27


>sp|UVRB_METTH|UVRABC system protein B|Methanothermobacter thermautotrophicus (strain

Query: 2 SGPKREEIM 10
SGP REE++
Sbjct: 164 SGPGREEVL 172


>sp|HLY_HALMT|HALOLYSIN mediterranei (strain ATCC 33500

Query: 1 SSGPKREEIM 10
S GPK++EI+
Sbjct: 35 SPGPKKDEIL 44


>sp|GCH3_PYRNV|GTP cyclohydrolase III|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 SSGPKREEIM 10
S GP+RE I+
Sbjct: 18 SLGPRREHII 27


>sp|GCH3_PYRAE|GTP cyclohydrolase III|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 SSGPKREEIM 10
S GP+RE I+
Sbjct: 18 SLGPRREHII 27


>sp|GCH3_PYRAR|GTP cyclohydrolase III|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 SSGPKREEIM 10
S GP+RE I+
Sbjct: 18 SLGPRREHII 27


>sp|PPAC_METTP|MANGANESE-DEPENDENT inorganic pyrophosphatase|Methanothrix thermoacetophila (strain DSM

Query: 3 GPKREEIM 10
PKREEI+
Sbjct: 228 APKREEIL 235


>sp|Y672_METJA|UNCHARACTERIZED transporter MJ0672|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SSGPKREEIM 10
S G K+EE+M
Sbjct: 401 SEGVKKEEMM 410


>sp|NTPPA_PYRFU|DTTP/UTP pyrophosphatase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 SSGPKREEIM 10
SS P+R EI+
Sbjct: 8 SSSPRRREIL 17


>sp|PURL_THEAC|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 PKREEIM 10
P+REEIM
Sbjct: 527 PEREEIM 533


>sp|NTPPA_PYRHO|DTTP/UTP pyrophosphatase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 SSGPKREEIM 10
SS P+R EI+
Sbjct: 7 SSSPRRREIL 16


>sp|NTPPA_PYRAB|DTTP/UTP pyrophosphatase|Pyrococcus abyssi (strain GE5 /

Query: 1 SSGPKREEIM 10
SS P+R EI+
Sbjct: 6 SSSPRRREIL 15


>sp|NEP_NATMA|HALOLYSIN-LIKE extracellular serine protease Nep|Natrialba magadii

Query: 3 GPKREEIM 10
GPK++EI+
Sbjct: 40 GPKKDEII 47


>sp|VAT_THEAC|VCP-LIKE ATPase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 SSGPKREEI 9
S PKREE+
Sbjct: 294 SIAPKREEV 302


>sp|Y1297_ARCFU|CELL division cycle protein 48|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SSGPKREEI 9
S PKREE+
Sbjct: 286 SIAPKREEV 294


>sp|SYFA_METLZ|PHENYLALANINE--TRNA ligase alpha subunit|Methanocorpusculum labreanum (strain ATCC

Query: 2 SGPKREEIM 10
SGPK EI+
Sbjct: 17 SGPKAAEIL 25


>sp|ABLA_METMP|L-LYSINE 2,3-aminomutase|Methanococcus maripaludis (strain DSM 14266

Query: 1 SSGPKREEI 9
SS P +EEI
Sbjct: 153 SSNPSKEEI 161


>sp|NTPPA_THEGJ|DTTP/UTP pyrophosphatase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 SSGPKREEIM 10
S+ P+R EI+
Sbjct: 6 SASPRRREIL 15


>sp|NTPPA_THEON|DTTP/UTP pyrophosphatase|Thermococcus onnurineus (strain NA1)

Query: 1 SSGPKREEIM 10
S+ P+R EI+
Sbjct: 6 SASPRRREIL 15


>sp|NTPPA_THEKO|DTTP/UTP pyrophosphatase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 SSGPKREEIM 10
S+ P+R EI+
Sbjct: 6 SASPRRREIL 15


>sp|TRPD_HALWD|ANTHRANILATE phosphoribosyltransferase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 SSGPKREEIM 10
++GPKR+ I+
Sbjct: 282 TTGPKRDIIL 291


>sp|CBIHC_ARCFU|COBALAMIN biosynthesis protein CbiHC|Archaeoglobus fulgidus (strain ATCC

Query: 3 GPKREEIM 10
GP +EE+M
Sbjct: 16 GPGKEELM 23




65|Sequence|321|330|REEIMESILF

>sp|MRE11_METMA|DNA double-strand break repair protein|Methanosarcina mazei (strain

Query: 2 EEIMESILF 10
EEI ES++F
Sbjct: 270 EEIPESVVF 278




66|Sequence|326|335|ESILFKCSDF

>sp|Y2291_ARCFU|UNCHARACTERIZED protein AF_2291|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 ILFKCSDF 10
I FKC DF
Sbjct: 79 IYFKCKDF 86


>sp|Y1051_METJA|UNCHARACTERIZED protein MJ1051|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 SILFKCSDF 10
S LFK SDF
Sbjct: 95 SYLFKLSDF 103


>sp|Y1620_METJA|UNCHARACTERIZED protein MJ1620|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ESILFKCSDF 10
ES+L KC D
Sbjct: 281 ESLLSKCKDL 290


>sp|ARAD_SACS2|ARABINONATE dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 ESILFKCSD 9
ES+ + CSD
Sbjct: 50 ESLAYGCSD 58




67|Sequence|331|340|KCSDFVVVQF

>sp|Y1392_METM6|UPF0200 protein MmarC6_1392|Methanococcus maripaludis (strain C6 /

Query: 1 KCSDFVVVQ 9
KC DFV+++
Sbjct: 80 KCEDFVIIE 88


>sp|KPYK_PYRAE|PYRUVATE kinase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 KCSDFVVV 8
+CSD+VVV
Sbjct: 245 QCSDYVVV 252


>sp|SPEB_METJA|AGMATINASE jannaschii (strain ATCC 43067

Query: 4 DFVVVQF 10
DF+V+QF
Sbjct: 126 DFIVIQF 132


>sp|Y527_METM7|UPF0200 protein MmarC7_0527|Methanococcus maripaludis (strain C7 /

Query: 2 CSDFVVVQ 9
C DFV+++
Sbjct: 81 CEDFVIIE 88


>sp|RPO2C_METJA|DNA-DIRECTED RNA polymerase subunit Rpo2C|Methanocaldococcus jannaschii (strain

Query: 1 KCSDFVVVQF 10
KC DF ++ +
Sbjct: 553 KCGDFAILDY 562


>sp|FDHD_SACS2|SULFUR carrier protein FdhD|Saccharolobus solfataricus (strain ATCC

Query: 1 KCSDFVVV 8
KC DF ++
Sbjct: 39 KCEDFAII 46




68|Sequence|336|345|VVVQFKDMDS

>sp|TRPD_METJA|ANTHRANILATE phosphoribosyltransferase|Methanocaldococcus jannaschii (strain

Query: 2 VVQFKDMD 9
V++FKD+D
Sbjct: 9 VIEFKDLD 16


>sp|PURQ_SACS2|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Saccharolobus solfataricus (strain ATCC

Query: 1 VVVQFKDMD 9
V+V++KD D
Sbjct: 28 VIVKYKDFD 36


>sp|METE_PYRAB|METHIONINE synthase|Pyrococcus abyssi (strain GE5 /

Query: 4 QFKDMD 9
QF+DMD
Sbjct: 239 QFRDMD 244


>sp|METE_PYRHO|METHIONINE synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 QFKDMD 9
QF+DMD
Sbjct: 239 QFRDMD 244




69|Sequence|341|350|KDMDSSYAKR

>sp|AROC_PYRAB|CHORISMATE synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 KDMDSSY 7
KD+DSSY
Sbjct: 83 KDVDSSY 89


>sp|AOCD_METMP|ORNITHINE cyclodeaminase|Methanococcus maripaludis (strain DSM 14266

Query: 1 KDMDSSYAK 9
K +D+SYAK
Sbjct: 42 KKIDTSYAK 50


>sp|AROC_THEKO|CHORISMATE synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 KDMDSSY 7
+D+DSSY
Sbjct: 83 RDVDSSY 89




70|Sequence|346|355|SYAKRDAFTD

>sp|BACS1_HALSS|SENSORY rhodopsin-1|Halobacterium sp. (strain SG1)

Query: 2 YAKRDAFTD 10
YA+R AFTD
Sbjct: 214 YARRQAFTD 222


>sp|BACS_HALSD|SENSORY rhodopsin|Halorubrum sodomense

Query: 2 YAKRDAFTD 10
YA+R AF D
Sbjct: 214 YARRQAFID 222


>sp|NTPTH_CALMQ|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 SYAKRDAFTD 10
SY RDA D
Sbjct: 151 SYVNRDAAVD 160


>sp|DDH_HALMT|D-2-HYDROXYACID dehydrogenase|Haloferax mediterranei (strain ATCC 33500

Query: 1 SYAKRDAFTD 10
S+ RDAF D
Sbjct: 49 SFGHRDAFLD 58


>sp|OTC_META3|ORNITHINE carbamoyltransferase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 SYAKRDA 7
SYAK+DA
Sbjct: 251 SYAKKDA 257


>sp|CH60_METAC|CHAPERONIN GroEL|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 AKRDAFTD 10
AKRD F D
Sbjct: 479 AKRDVFED 486


>sp|RS4_METJA|SMALL ribosomal subunit protein uS4|Methanocaldococcus jannaschii (strain

Query: 1 SYAKRDAFTD 10
SYAK F D
Sbjct: 155 SYAKNSPFND 164




71|Sequence|351|360|DAFTDSAISA

>sp|Y1807_METBF|PROTEIN Mbar_A1807|Methanosarcina barkeri (strain Fusaro /

Query: 1 DAFTDSAISA 10
DA DSAISA
Sbjct: 72 DAIMDSAISA 81


>sp|SRP54_PYRCJ|SIGNAL recognition particle 54 kDa|Pyrobaculum calidifontis (strain DSM

Query: 2 AFTDSAI 8
AFTDSA+
Sbjct: 48 AFTDSAV 54


>sp|Y484_METMA|PROTEIN MM_0484|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 DAFTDSAISA 10
+A DSAISA
Sbjct: 72 EAILDSAISA 81


>sp|Y1344_METBU|PROTEIN Mbur_1344|Methanococcoides burtonii (strain DSM 6242

Query: 2 AFTDSAISA 10
A DSAISA
Sbjct: 69 AIVDSAISA 77




72|Sequence|356|365|SAISAKVNGE

>sp|CMR3_SACS2|CRISPR system CMR subunit Cmr3|Saccharolobus solfataricus (strain ATCC

Query: 2 AISAKVNGE 10
AIS K+NG+
Sbjct: 177 AISDKINGK 185


>sp|MRE11_METMA|DNA double-strand break repair protein|Methanosarcina mazei (strain

Query: 3 ISAKVNGE 10
I+AKV+GE
Sbjct: 247 ITAKVDGE 254


>sp|AATC_THEGJ|A-TYPE ATP synthase subunit C|Thermococcus gammatolerans (strain DSM 15229

Query: 1 SAISAKVNGE 10
S + AKV GE
Sbjct: 131 SVVKAKVRGE 140


>sp|HIS8_METM6|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C6 /

Query: 2 AISAKVNG 9
AISAK++G
Sbjct: 126 AISAKIHG 133


>sp|HIS8_METMP|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain DSM 14266

Query: 2 AISAKVNG 9
AISAK++G
Sbjct: 126 AISAKIHG 133


>sp|HIS8_METM7|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C7 /

Query: 2 AISAKVNG 9
AISAK++G
Sbjct: 126 AISAKIHG 133


>sp|HIS8_METM5|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C5 /

Query: 2 AISAKVNG 9
AISAK++G
Sbjct: 126 AISAKIHG 133


>sp|RHAD_THEAC|L-RHAMNOSE 1-dehydrogenase (NADP(+))|Thermoplasma acidophilum (strain ATCC

Query: 1 SAISAKVNGE 10
S+ISA V GE
Sbjct: 143 SSISAHVGGE 152


>sp|HIS8_METVS|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus vannielii (strain ATCC 35089

Query: 2 AISAKVNG 9
AISAK++G
Sbjct: 126 AISAKIHG 133


>sp|KAD6_METMA|PUTATIVE adenylate kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 AISAKVNGE 10
A AKVNGE
Sbjct: 74 AEKAKVNGE 82




73|Sequence|361|370|KVNGEHKEKD

>sp|FAU1_CALMQ|PROBABLE ribonuclease FAU-1|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 KVNGEH 6
KVNGEH
Sbjct: 314 KVNGEH 319


>sp|KAD6_METMA|PUTATIVE adenylate kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 KVNGEHKE 8
KVNGE KE
Sbjct: 78 KVNGEEKE 85


>sp|TRPA_METVO|TRYPTOPHAN synthase alpha chain|Methanococcus voltae

Query: 3 NGEHKEK 9
NGEH EK
Sbjct: 222 NGEHAEK 228


>sp|PURL_PYRAB|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrococcus abyssi (strain GE5 /

Query: 1 KVNGEHKEKD 10
+VNGE EKD
Sbjct: 678 EVNGEKVEKD 687


>sp|COXX_THEPD|PROTOHEME IX farnesyltransferase|Thermofilum pendens (strain DSM 2475

Query: 2 VNGEHKEK 9
V+GE++EK
Sbjct: 253 VSGEYREK 260


>sp|Y1656_METJA|UNCHARACTERIZED protein MJ1656|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KVNGEHKEK 9
+VNGE K+K
Sbjct: 165 RVNGEIKQK 173


>sp|GCSH_PICTO|PROBABLE glycine cleavage system H|Picrophilus torridus (strain ATCC

Query: 3 NGEHKEK 9
NGEHK K
Sbjct: 47 NGEHKNK 53


>sp|TMG10_METJA|TRNA (guanine(10)-N2)-dimethyltransferase|Methanocaldococcus

Query: 2 VNGEHKE 8
+NGEH+E
Sbjct: 6 LNGEHEE 12




74|Sequence|366|375|HKEKDLEPWD

>sp|RGYR1_AERPE|REVERSE gyrase 1|Aeropyrum pernix (strain ATCC 700893

Query: 1 HKEKDLEPW 9
HK+ +EPW
Sbjct: 964 HKKTGIEPW 972


>sp|LEUC1_PYRFU|3-ISOPROPYLMALATE dehydratase large subunit 1|Pyrococcus furiosus (strain ATCC 43587

Query: 3 EKDLEPW 9
E DL+PW
Sbjct: 167 EGDLQPW 173


>sp|AATA_METTP|A-TYPE ATP synthase subunit A|Methanothrix thermoacetophila (strain DSM

Query: 3 EKDLEPW 9
EKDLE W
Sbjct: 432 EKDLESW 438


>sp|Y1314_ARCFU|UNCHARACTERIZED protein AF_1314|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 DLEPWD 10
DL+PW+
Sbjct: 94 DLKPWN 99


>sp|RS8_METLZ|SMALL ribosomal subunit protein uS8|Methanocorpusculum labreanum

Query: 2 KEKDLEPWD 10
K +DLE W+
Sbjct: 82 KVEDLESWE 90


>sp|SYT_META3|THREONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 KEKDLEP 8
KEKD+EP
Sbjct: 200 KEKDIEP 206


>sp|HMGCS_HALVD|HYDROXYMETHYLGLUTARYL-COA synthase|Haloferax volcanii (strain ATCC 29605

Query: 2 KEKDLEPWD 10
+E+D E WD
Sbjct: 281 REEDFETWD 289


>sp|SYE_METS3|GLUTAMATE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 EKDLEPWD 10
EK+LE WD
Sbjct: 216 EKNLELWD 223


>sp|KAE1B_METAC|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 KEKDLEPWD 10
KEK +EP D
Sbjct: 66 KEKGVEPSD 74


>sp|SRP54_THEGJ|SIGNAL recognition particle 54 kDa|Thermococcus gammatolerans (strain DSM

Query: 2 KEKDLEPWD 10
K DLEP+D
Sbjct: 277 KIDDLEPFD 285


>sp|PURL_ARCFU|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 KEKDLEPWD 10
KE+ + PW+
Sbjct: 332 KEEGMAPWE 340


>sp|SRP54_PYRHO|SIGNAL recognition particle 54 kDa|Pyrococcus horikoshii (strain ATCC

Query: 2 KEKDLEPWD 10
K DLEP+D
Sbjct: 277 KIDDLEPFD 285


>sp|SRP54_PYRAB|SIGNAL recognition particle 54 kDa|Pyrococcus abyssi (strain GE5 /

Query: 2 KEKDLEPWD 10
K DLEP+D
Sbjct: 277 KIDDLEPFD 285


>sp|SYFA_METKA|PHENYLALANINE--TRNA ligase alpha subunit|Methanopyrus kandleri (strain AV19 /

Query: 2 KEKDLEPWD 10
KEK+ +P+D
Sbjct: 236 KEKEFKPYD 244


>sp|SUI1_THEVO|PROTEIN translation factor SUI1 homolog|Thermoplasma volcanium (strain

Query: 4 KDLEPWD 10
K+L+PW+
Sbjct: 11 KELQPWE 17


>sp|SRP54_META3|SIGNAL recognition particle 54 kDa|Methanococcus aeolicus (strain ATCC

Query: 2 KEKDLEPWD 10
K DLEP+D
Sbjct: 277 KVDDLEPFD 285




75|Sequence|371|380|LEPWDAGELT

>sp|FTHS_HALWD|FORMATE--TETRAHYDROFOLATE ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 LEPWDAGE 8
LEPWD G
Sbjct: 35 LEPWDLGN 42


>sp|HEM3_SULTO|PROBABLE porphobilinogen deaminase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LEPWDAGEL 9
+ P++AGEL
Sbjct: 270 MTPYEAGEL 278


>sp|SYW_METAC|TRYPTOPHAN--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 LEPWDAGELT 10
L+PW + ++T
Sbjct: 5 LDPWSSSDIT 14


>sp|Y1059_METJA|UNCHARACTERIZED glycosyltransferase MJ1059|Methanocaldococcus jannaschii (strain

Query: 2 EPWDAGEL 9
EPW GE+
Sbjct: 37 EPWLKGEI 44


>sp|SYA_THEAC|ALANINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 EPWDAG 7
+PWD G
Sbjct: 534 QPWDLG 539


>sp|CUTA_SULAC|GLYCERALDEHYDE dehydrogenase large chain|Sulfolobus acidocaldarius (strain ATCC

Query: 3 PWDAGEL 9
PW+ GE+
Sbjct: 458 PWEYGEI 464


>sp|PCCB_HALMT|PROPIONYL-COA carboxylase, carboxyltransferase subunit|Haloferax mediterranei

Query: 1 LEPWDAGE 8
+EPWD E
Sbjct: 258 VEPWDDPE 265


>sp|CBIA_HALMA|COBYRINATE a,c-diamide synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 LEPWDAGE 8
L+PW AGE
Sbjct: 59 LDPWLAGE 66


>sp|SYW_METMA|TRYPTOPHAN--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LEPWDAGELT 10
L+PW + +T
Sbjct: 5 LDPWSSSNIT 14


>sp|SYC_METS5|CYSTEINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 2 EPWDAGE 8
E WD GE
Sbjct: 158 EEWDQGE 164


>sp|SYW_AERPE|TRYPTOPHAN--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 LEPWDAGEL 9
L+PW A E+
Sbjct: 6 LDPWGAVEI 14


>sp|Y1468_METJA|UNCHARACTERIZED protein MJ1468|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 WDAGELT 10
WD G+LT
Sbjct: 77 WDFGDLT 83


>sp|CBID_METHJ|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 LEPWD 5
+EPWD
Sbjct: 206 VEPWD 210


>sp|LIPA_METAR|LIPOYL synthase|Methanocella arvoryzae (strain DSM 22066

Query: 1 LEPWDAGELT 10
E WD G LT
Sbjct: 47 FECWDGGCLT 56


>sp|ASSY_THEVO|ARGININOSUCCINATE synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 PWDAG 7
PW+AG
Sbjct: 202 PWEAG 206


>sp|Y1944_ARCFU|UNCHARACTERIZED protein AF_1944|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LEPWD 5
+EPWD
Sbjct: 42 IEPWD 46




76|Sequence|376|385|AGELTANEEL

>sp|HYPA_META3|HYDROGENASE maturation factor HypA|Methanococcus aeolicus (strain ATCC

Query: 2 GELTANEEL 10
GELTAN+E
Sbjct: 84 GELTANDEF 92


>sp|RS2_CALMQ|SMALL ribosomal subunit protein uS2|Caldivirga maquilingensis (strain

Query: 2 GELTANEEL 10
GEL NE+L
Sbjct: 191 GELKPNEDL 199


>sp|THYX_THEON|FLAVIN-DEPENDENT thymidylate synthase|Thermococcus onnurineus (strain NA1)

Query: 2 GELTANEEL 10
GE+ NEEL
Sbjct: 194 GEIAKNEEL 202


>sp|Y1370_METJA|UPF0285 protein MJ1370|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AGELTANE 8
AG++TANE
Sbjct: 197 AGKITANE 204


>sp|GLNB4_METBA|NITROGEN fixation nifHD2 region GlnB-like|Methanosarcina barkeri

Query: 1 AGELTANEEL 10
+GE T N+EL
Sbjct: 115 SGEATVNKEL 124


>sp|Y078_METKA|UPF0285 protein MK0078|Methanopyrus kandleri (strain AV19 /

Query: 1 AGELTAN 7
AGEL+AN
Sbjct: 206 AGELSAN 212




77|Sequence|381|390|ANEELEALEN

>sp|APGM_PYRIL|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrobaculum islandicum (strain DSM 4184

Query: 3 EELEALEN 10
EE+EA+EN
Sbjct: 117 EEVEAVEN 124


>sp|ADH_SULTO|NAD-DEPENDENT alcohol dehydrogenase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 ANEELEALEN 10
ANE ++ LEN
Sbjct: 327 ANEAIDNLEN 336


>sp|ADH_SULSR|NAD-DEPENDENT alcohol dehydrogenase|Sulfolobus sp. (strain RC3)

Query: 1 ANEELEALEN 10
ANE ++ LEN
Sbjct: 327 ANEAIDNLEN 336


>sp|RAD50_METMA|DNA double-strand break repair Rad50|Methanosarcina mazei (strain ATCC

Query: 2 NEELEALEN 10
EEL+ALEN
Sbjct: 885 KEELKALEN 893


>sp|ADH_SACS2|NAD-DEPENDENT alcohol dehydrogenase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 ANEELEALEN 10
ANE ++ LEN
Sbjct: 327 ANEAIDNLEN 336




78|Sequence|386|395|EALENDVSNG

>sp|MCRC_METJA|METHYL-COENZYME M reductase I operon|Methanocaldococcus jannaschii (strain ATCC

Query: 1 EALENDV 7
EAL+NDV
Sbjct: 32 EALKNDV 38


>sp|GATD_METS3|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanobrevibacter smithii (strain ATCC

Query: 1 EALENDVSNG 10
E++ ND+S+G
Sbjct: 158 ESIANDISDG 167


>sp|SYY_METS3|TYROSINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 EALENDVSNG 10
E L ND SNG
Sbjct: 282 EQLINDFSNG 291


>sp|COFD_METBF|2-PHOSPHO-L-LACTATE transferase|Methanosarcina barkeri (strain Fusaro /

Query: 1 EALEND 6
EALEND
Sbjct: 179 EALEND 184




79|Sequence|391|400|DVSNGWDPND

>sp|DNLI_METKA|DNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 5 GWDPND 10
GWDP D
Sbjct: 52 GWDPRD 57


>sp|HMEC_ARCPA|HDR-LIKE menaquinol oxidoreductase cytochrome b-like|Archaeoglobus profundus

Query: 4 NGWDPN 9
N WDPN
Sbjct: 280 NPWDPN 285


>sp|CDC6O_HALMA|ORC1-TYPE DNA replication protein 15|Haloarcula marismortui (strain ATCC

Query: 2 VSNGWDPND 10
V +GW+PN+
Sbjct: 43 VIDGWEPNN 51


>sp|SYFB_AERPE|PHENYLALANINE--TRNA ligase beta subunit|Aeropyrum pernix (strain ATCC 700893

Query: 2 VSNGWDP 8
V GWDP
Sbjct: 68 VEEGWDP 74


>sp|Y748_THEPD|PROTEIN Tpen_0748|Thermofilum pendens (strain DSM 2475

Query: 2 VSNGWDPND 10
V GWDP +
Sbjct: 157 VDEGWDPEE 165


>sp|IF2P_HALLT|PROBABLE translation initiation factor IF-2|Halorubrum lacusprofundi (strain

Query: 1 DVSNGWDPND 10
D + GW+P D
Sbjct: 138 DTTPGWNPQD 147


>sp|GATA_METTH|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanothermobacter thermautotrophicus

Query: 1 DVSNGWDPND 10
DV +G+DP D
Sbjct: 226 DVISGYDPAD 235


>sp|RS5_NATPD|SMALL ribosomal subunit protein uS5|Natronomonas pharaonis (strain

Query: 2 VSNGWDP 8
+SNGW+P
Sbjct: 1 MSNGWEP 7


>sp|CDC6A_HALSA|ORC1-TYPE DNA replication protein 10|Halobacterium salinarum (strain ATCC

Query: 2 VSNGWDPND 10
V +GW+PN+
Sbjct: 46 VIDGWEPNN 54


>sp|ASSY_PYRAE|ARGININOSUCCINATE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 DVSNGWDPND 10
D S GW P+D
Sbjct: 366 DYSAGWYPSD 375


>sp|HMEC_ARCFU|HDR-LIKE menaquinol oxidoreductase cytochrome b-like|Archaeoglobus fulgidus

Query: 4 NGWDPND 10
N WDP D
Sbjct: 278 NPWDPAD 284


>sp|ASSY_HYPBU|ARGININOSUCCINATE synthase|Hyperthermus butylicus (strain DSM 5456

Query: 1 DVSNGWDPND 10
D ++GW P+D
Sbjct: 362 DYNHGWYPSD 371


>sp|IF2P_HALMA|PROBABLE translation initiation factor IF-2|Haloarcula marismortui (strain

Query: 1 DVSNGWDPND 10
D GW+PN+
Sbjct: 142 DTVPGWNPNE 151


>sp|CARA_THEVO|CARBAMOYL phosphate synthase small chain|Thermoplasma volcanium (strain ATCC

Query: 5 GWDPND 10
GWD ND
Sbjct: 299 GWDAND 304


>sp|Y964_METJA|UNCHARACTERIZED protein MJ0964|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VSNGWDPND 10
V G+DP D
Sbjct: 445 VERGYDPRD 453


>sp|IF2P_PYRCJ|PROBABLE translation initiation factor IF-2|Pyrobaculum calidifontis (strain

Query: 6 WDPND 10
WDP D
Sbjct: 332 WDPKD 336


>sp|SYT_PYRAR|THREONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 6 WDPND 10
WDP D
Sbjct: 13 WDPRD 17


>sp|RPO10_SULTO|DNA-DIRECTED RNA polymerase subunit Rpo10|Sulfurisphaera tokodaii (strain DSM

Query: 2 VSNGWDP 8
VSNG DP
Sbjct: 25 VSNGEDP 31


>sp|EF2_METPE|ELONGATION factor 2|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 VSNGWDPND 10
V+NGW+ ++
Sbjct: 523 VANGWEKDE 531


>sp|IF2P_HALWD|PROBABLE translation initiation factor IF-2|Haloquadratum walsbyi (strain

Query: 1 DVSNGWDPND 10
D + GW P D
Sbjct: 161 DTTPGWTPTD 170


>sp|IF2P_HALSA|PROBABLE translation initiation factor IF-2|Halobacterium salinarum (strain

Query: 1 DVSNGWDPN 9
D + GW+PN
Sbjct: 141 DTTPGWNPN 149


>sp|IF2P_HALS3|PROBABLE translation initiation factor IF-2|Halobacterium salinarum (strain

Query: 1 DVSNGWDPN 9
D + GW+PN
Sbjct: 141 DTTPGWNPN 149


>sp|RS5_HALMA|SMALL ribosomal subunit protein uS5|Haloarcula marismortui (strain

Query: 3 SNGWDP 8
+NGW+P
Sbjct: 4 NNGWEP 9


>sp|IF2P_NATPD|PROBABLE translation initiation factor IF-2|Natronomonas pharaonis (strain

Query: 1 DVSNGWDPN 9
D GW+PN
Sbjct: 143 DTVPGWNPN 151


>sp|SYR_METS3|ARGININE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 VSNGWDPND 10
VS+ W PN+
Sbjct: 484 VSDDWVPNE 492




80|Sequence|396|405|WDPNDMFRYN

>sp|CDC6O_HALMA|ORC1-TYPE DNA replication protein 15|Haloarcula marismortui (strain ATCC

Query: 1 WDPNDMFRY 9
W+PN++F Y
Sbjct: 47 WEPNNIFLY 55


>sp|SRP54_HALMA|SIGNAL recognition particle 54 kDa|Haloarcula marismortui (strain ATCC

Query: 1 WDPNDMF 7
WDP DM
Sbjct: 316 WDPEDML 322


>sp|ACDA_METBU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanococcoides

Query: 1 WDPNDMFRYN 10
WD N + RYN
Sbjct: 53 WDHNILDRYN 62


>sp|UPPP_SULTO|UNDECAPRENYL-DIPHOSPHATASE tokodaii (strain DSM 16993

Query: 3 PNDMFRYN 10
P+D FRY+
Sbjct: 174 PDDAFRYS 181


>sp|SYC_PYRHO|CYSTEINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 WDPNDMFRYN 10
WD ND YN
Sbjct: 339 WDENDFKAYN 348


>sp|FAEHP_METAR|BIFUNCTIONAL enzyme Fae/Hps|Methanocella arvoryzae (strain DSM 22066

Query: 2 DPNDMFRYN 10
DP +++YN
Sbjct: 121 DPTKIYKYN 129


>sp|IF2P_METKA|PROBABLE translation initiation factor IF-2|Methanopyrus kandleri (strain

Query: 2 DPNDMFR 8
DP+D FR
Sbjct: 296 DPSDRFR 302


>sp|FTTA_LOKSG|TRANSCRIPTION termination factor FttA|Lokiarchaeum sp. (strain GC14_75)

Query: 2 DPNDMFRY 9
+PND F Y
Sbjct: 217 NPNDRFPY 224


>sp|Y817_ARCFU|UNCHARACTERIZED protein AF_0817|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 WDPNDMF 7
WD ND++
Sbjct: 421 WDENDLY 427


>sp|VHUB_METVO|POLYFERREDOXIN protein VhuB|Methanococcus voltae

Query: 3 PNDMFRYN 10
P DM YN
Sbjct: 210 PGDMITYN 217


>sp|SYV_THEAC|VALINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 WDPNDMFRYN 10
WD D++R+
Sbjct: 16 WDEKDVYRFE 25


>sp|HIS5_SULAC|IMIDAZOLE glycerol phosphate synthase subunit|Sulfolobus acidocaldarius

Query: 1 WDPNDMFRYN 10
WD ++ +YN
Sbjct: 117 WDKVNVIKYN 126


>sp|SYV_PYRFU|VALINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 WDPNDMF 7
W P DMF
Sbjct: 376 WYPEDMF 382


>sp|SYV_PYRHO|VALINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 WDPNDMF 7
W P DMF
Sbjct: 376 WYPEDMF 382


>sp|TRUD_HALSA|PROBABLE tRNA pseudouridine synthase D|Halobacterium salinarum (strain

Query: 1 WDPNDMFR 8
WD ND R
Sbjct: 66 WDTNDFAR 73


>sp|TRUD_HALS3|PROBABLE tRNA pseudouridine synthase D|Halobacterium salinarum (strain

Query: 1 WDPNDMFR 8
WD ND R
Sbjct: 66 WDTNDFAR 73


>sp|SYI_ARCFU|ISOLEUCINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 WDPNDMFR 8
W+ ND++R
Sbjct: 19 WEDNDIYR 26


>sp|SYV_PYRAB|VALINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 WDPNDMF 7
W P DMF
Sbjct: 376 WYPEDMF 382




81|Sequence|401|410|MFRYNEENYG

>sp|PDAD2_METMA|PYRUVOYL-DEPENDENT arginine decarboxylase 2|Methanosarcina mazei (strain ATCC

Query: 5 NEENYG 10
NEENYG
Sbjct: 92 NEENYG 97


>sp|Y779_METS3|UPF0173 metal-dependent hydrolase Msm_0779|Methanobrevibacter smithii

Query: 2 FRYNEENY 9
F YN ENY
Sbjct: 230 FEYNPENY 237


>sp|FLPA_AERPE|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Aeropyrum pernix (strain ATCC

Query: 1 MFRYNEENY 9
+FRYN E Y
Sbjct: 44 IFRYNGEEY 52


>sp|FLAB2_METVO|FLAGELLIN B2|Methanococcus voltae

Query: 1 MFRYNEENY 9
+++YNE +Y
Sbjct: 109 VYKYNESSY 117


>sp|SYH_SACS2|HISTIDINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 MFRYNEENYG 10
++RY+E YG
Sbjct: 107 VYRYDEPQYG 116


>sp|PDAD2_METAC|PYRUVOYL-DEPENDENT arginine decarboxylase 2|Methanosarcina acetivorans (strain ATCC

Query: 5 NEENYG 10
NE+NYG
Sbjct: 92 NEDNYG 97


>sp|SYH_SACI7|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 MFRYNEENYG 10
++RY+E YG
Sbjct: 107 VYRYDEPQYG 116


>sp|SYH_PYRAB|HISTIDINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 MFRYNEENYG 10
MFRY E G
Sbjct: 105 MFRYEEPQSG 114


>sp|SYH_SACI1|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 MFRYNEENYG 10
++RY+E YG
Sbjct: 107 VYRYDEPQYG 116


>sp|SYH_PYRIL|HISTIDINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 MFRYNEENYG 10
+FRY+E +G
Sbjct: 111 VFRYDEPQHG 120


>sp|SYH_SACSH|HISTIDINE--TRNA ligase|Saccharolobus shibatae (strain ATCC 51178

Query: 1 MFRYNEENYG 10
++RY+E YG
Sbjct: 107 VYRYDEPQYG 116


>sp|SYH_SACI6|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 MFRYNEENYG 10
++RY+E YG
Sbjct: 107 VYRYDEPQYG 116


>sp|SYH_SACI4|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 MFRYNEENYG 10
++RY+E YG
Sbjct: 107 VYRYDEPQYG 116


>sp|SYH_SACI2|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 MFRYNEENYG 10
++RY+E YG
Sbjct: 107 VYRYDEPQYG 116


>sp|SYH_SACI3|HISTIDINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 MFRYNEENYG 10
++RY+E YG
Sbjct: 107 VYRYDEPQYG 116


>sp|SYH_THEKO|HISTIDINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 MFRYNEENYG 10
MFRY E G
Sbjct: 107 MFRYEEPQSG 116


>sp|SYH_PYRHO|HISTIDINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 MFRYNEENYG 10
MFRY E G
Sbjct: 105 MFRYEEPQSG 114


>sp|SYH_PYRFU|HISTIDINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 MFRYNEENYG 10
MFRY E G
Sbjct: 105 MFRYEEPQSG 114


>sp|RS12_METB6|SMALL ribosomal subunit protein uS12|Methanoregula boonei (strain DSM

Query: 2 FRYNEENYG 10
FR++++NY
Sbjct: 18 FRWSDKNYA 26


>sp|NADK_SACS2|NAD kinase|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 YNEENY 9
YNEE Y
Sbjct: 89 YNEEEY 94


>sp|GPMA_METPE|2,3-BISPHOSPHOGLYCERATE-DEPENDENT phosphoglycerate mutase|Methanosphaerula palustris (strain ATCC

Query: 2 FRYNEENYG 10
+R NE +YG
Sbjct: 83 WRLNERHYG 91


>sp|SYH_PYRAR|HISTIDINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 MFRYNEENYG 10
+FRY+E +G
Sbjct: 111 VFRYDEPQHG 120


>sp|GPMA_METB6|2,3-BISPHOSPHOGLYCERATE-DEPENDENT phosphoglycerate mutase|Methanoregula boonei (strain DSM 21154

Query: 2 FRYNEENYG 10
+R NE +YG
Sbjct: 83 WRLNERHYG 91


>sp|Y1283_METJA|UNCHARACTERIZED protein MJ1283|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 FRYNEENYG 10
F YN NYG
Sbjct: 112 FSYNISNYG 120


>sp|T1M1_METJA|TYPE I restriction enzyme MjaVII|Methanocaldococcus jannaschii (strain

Query: 2 FRYNEENYG 10
+RY ++NYG
Sbjct: 289 YRYVKDNYG 297


>sp|COBD_PYRAB|PROBABLE cobalamin biosynthesis protein CobD|Pyrococcus abyssi (strain GE5 /

Query: 1 MFRYNEENY 9
MF Y +E Y
Sbjct: 173 MFGYRDERY 181


>sp|SYH_PYRNV|HISTIDINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 MFRYNEENYG 10
+FRY+E +G
Sbjct: 111 VFRYDEPQHG 120


>sp|SYH_PYRAE|HISTIDINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 MFRYNEENYG 10
+FRY+E +G
Sbjct: 111 VFRYDEPQHG 120


>sp|CRYD_NATPD|CRYPTOCHROME DASH|Natronomonas pharaonis (strain ATCC 35678

Query: 3 RYNEENYG 10
RY E YG
Sbjct: 40 RYTESEYG 47


>sp|SYH_PYRCJ|HISTIDINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 MFRYNEENYG 10
+FRY+E +G
Sbjct: 111 VFRYDEPQHG 120


>sp|GPMA_METHJ|2,3-BISPHOSPHOGLYCERATE-DEPENDENT phosphoglycerate mutase|Methanospirillum hungatei JF-1 (strain

Query: 2 FRYNEENYG 10
+R NE +YG
Sbjct: 83 WRLNERHYG 91




82|Sequence|406|415|EENYGVVSTY

>sp|PDAD2_METMA|PYRUVOYL-DEPENDENT arginine decarboxylase 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 EENYGVVSTY 10
EENYG +S +
Sbjct: 93 EENYGYISEH 102


>sp|Y360_CALMQ|PROTEIN Cmaq_0360|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 EENYGVVST 9
E+NYGV +T
Sbjct: 43 EDNYGVFTT 51


>sp|PELO_HYPBU|PROTEIN pelota homolog|Hyperthermus butylicus (strain DSM 5456

Query: 2 ENYGVVSTY 10
E YGVV Y
Sbjct: 88 EKYGVVGKY 96


>sp|Y002_METMP|UPF0425 pyridoxal phosphate-dependent protein MMP0002|Methanococcus

Query: 2 ENYGVVS 8
ENYG+V+
Sbjct: 309 ENYGIVT 315


>sp|RNP3_PYRAB|RIBONUCLEASE P protein component 3|Pyrococcus abyssi (strain GE5 /

Query: 1 EENYGVVS 8
E NYG+V+
Sbjct: 49 ERNYGLVA 56


>sp|SYM_NANEQ|METHIONINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 EENYGVVS 8
EE YG+VS
Sbjct: 666 EEEYGLVS 673


>sp|PDAD2_METAC|PYRUVOYL-DEPENDENT arginine decarboxylase 2|Methanosarcina acetivorans (strain ATCC

Query: 1 EENYGVVSTY 10
E+NYG +S +
Sbjct: 93 EDNYGYISEH 102


>sp|GATA_METJA|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanocaldococcus jannaschii (strain

Query: 3 NYGVVSTY 10
+YGVVS Y
Sbjct: 172 SYGVVSRY 179




83|Sequence|411|420|VVSTYDSSLS

>sp|XPB_ARCFU|DNA 3'-5' translocase XPB|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 VSTYDSS 8
VSTYDS+
Sbjct: 156 VSTYDSA 162


>sp|Y731_ARCFU|PUTATIVE ABC transporter ATP-binding protein|Archaeoglobus fulgidus (strain

Query: 1 VVSTYDSSLS 10
VVST+D+ L+
Sbjct: 190 VVSTHDADLA 199


>sp|ARLY_NATPD|ARGININOSUCCINATE lyase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 VVSTYDSS 8
VVS+YDS+
Sbjct: 480 VVSSYDST 487


>sp|UREG_METS5|UREASE accessory protein UreG|Metallosphaera sedula (strain ATCC 51363

Query: 1 VVSTYDSSLS 10
V+ST+ SSL+
Sbjct: 109 VMSTFSSSLA 118




84|Sequence|416|425|DSSLSSYTVP

>sp|Y1137_METTH|UNCHARACTERIZED protein MTH_1137|Methanothermobacter thermautotrophicus (strain

Query: 1 DSSLSSYTVP 10
DSS+ S T+P
Sbjct: 479 DSSIVSTTIP 488




85|Sequence|421|430|SYTVPLERDN

>sp|MSMJS_METJA|SMALL-CONDUCTANCE mechanosensitive channel MscMJ|Methanocaldococcus jannaschii

Query: 1 SYTVPLERDN 10
+YTV LE+DN
Sbjct: 341 TYTVYLEKDN 350


>sp|DHE2_HALSI|NAD-SPECIFIC glutamate dehydrogenase A|Halobacterium salinarum (Halobacterium

Query: 3 TVPLERDN 10
T+P+ERD+
Sbjct: 62 TIPIERDD 69


>sp|ARLY_META3|ARGININOSUCCINATE lyase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 SYTVPLERD 9
SY P+ERD
Sbjct: 176 SYASPMERD 184


>sp|RS4_HALSA|SMALL ribosomal subunit protein uS4|Halobacterium salinarum (strain ATCC

Query: 1 SYTVPLERDN 10
SYTVP+ +N
Sbjct: 138 SYTVPVSEEN 147


>sp|RS4_HALS3|SMALL ribosomal subunit protein uS4|Halobacterium salinarum (strain ATCC

Query: 1 SYTVPLERDN 10
SYTVP+ +N
Sbjct: 138 SYTVPVSEEN 147


>sp|PPSA_PYRFU|PHOSPHOENOLPYRUVATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 YTVPLERDN 10
YT+ ++RDN
Sbjct: 713 YTLAIDRDN 721


>sp|SYDND_METM7|ASPARTATE--TRNA(ASP/ASN) ligase|Methanococcus maripaludis (strain C7 /

Query: 2 YTVPLERDN 10
YT+P E DN
Sbjct: 339 YTLPHENDN 347


>sp|PPSA_PYRAB|PROBABLE phosphoenolpyruvate synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 YTVPLERDN 10
YT+ ++RDN
Sbjct: 713 YTLAIDRDN 721


>sp|PPSA_PYRHO|PROBABLE phosphoenolpyruvate synthase|Pyrococcus horikoshii (strain ATCC

Query: 2 YTVPLERDN 10
YT+ ++RDN
Sbjct: 716 YTLAIDRDN 724


>sp|DP2L_METMA|DNA polymerase II large subunit|Methanosarcina mazei (strain ATCC

Query: 2 YTVPLERDN 10
Y PLERD+
Sbjct: 798 YGKPLERDD 806


>sp|SYDND_METVS|ASPARTATE--TRNA(ASP/ASN) ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 YTVPLERDN 10
YT+P E DN
Sbjct: 339 YTLPDENDN 347


>sp|FWDB_METJA|TUNGSTEN-CONTAINING formylmethanofuran dehydrogenase 2 subunit|Methanocaldococcus

Query: 2 YTVPLERDN 10
YT PL R+N
Sbjct: 52 YTEPLMREN 60


>sp|TMG10_PYRAB|TRNA (guanine(10)-N2)-dimethyltransferase|Pyrococcus abyssi (strain GE5

Query: 1 SYTVPLERD 9
S T+P++RD
Sbjct: 260 STTLPMDRD 268


>sp|DP2L_METBF|DNA polymerase II large subunit|Methanosarcina barkeri (strain Fusaro /

Query: 2 YTVPLERDN 10
Y PLERD+
Sbjct: 792 YGNPLERDD 800


>sp|DHEB_HALSI|GLUTAMATE dehydrogenase B|Halobacterium salinarum (Halobacterium halobium)

Query: 3 TVPLERDN 10
+VP+ERD+
Sbjct: 55 SVPVERDD 62


>sp|DHEB_HALSA|GLUTAMATE dehydrogenase B|Halobacterium salinarum (strain ATCC 700922

Query: 3 TVPLERDN 10
+VP+ERD+
Sbjct: 55 SVPVERDD 62


>sp|DP2L_METAC|DNA polymerase II large subunit|Methanosarcina acetivorans (strain ATCC

Query: 2 YTVPLERDN 10
Y PLERD+
Sbjct: 791 YGNPLERDD 799


>sp|NRPR2_METMA|GLOBAL nitrogen regulator NrpRII|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 VPLERDN 10
VP+ERD+
Sbjct: 203 VPIERDH 209


>sp|RL18_NATPD|LARGE ribosomal subunit protein uL18|Natronomonas pharaonis (strain

Query: 2 YTVPLER 8
YTVP+ R
Sbjct: 7 YTVPMRR 13


>sp|RL31_HYPBU|LARGE ribosomal subunit protein eL31|Hyperthermus butylicus (strain DSM

Query: 2 YTVPLER 8
YT+PL R
Sbjct: 10 YTIPLSR 16


>sp|SYDND_METM6|ASPARTATE--TRNA(ASP/ASN) ligase|Methanococcus maripaludis (strain C6 /

Query: 2 YTVPLERD 9
YT+P E+D
Sbjct: 339 YTLPHEKD 346


>sp|PPSA_METJA|PROBABLE phosphoenolpyruvate synthase|Methanocaldococcus jannaschii (strain

Query: 2 YTVPLERDN 10
YT+ ++R+N
Sbjct: 1090 YTIAIDRNN 1098


>sp|SYDND_METM5|ASPARTATE--TRNA(ASP/ASN) ligase|Methanococcus maripaludis (strain C5 /

Query: 2 YTVPLERDN 10
YT+P + DN
Sbjct: 339 YTLPHKHDN 347


>sp|PDAD_PICTO|PYRUVOYL-DEPENDENT arginine decarboxylase|Picrophilus torridus (strain ATCC 700027

Query: 2 YTVPLERDN 10
Y VP +RD+
Sbjct: 90 YAVPSDRDH 98


>sp|SYDND_METMP|ASPARTATE--TRNA(ASP/ASN) ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 YTVPLERDN 10
YT+P + DN
Sbjct: 339 YTLPHKHDN 347




86|Sequence|426|435|LERDNSEEFL

>sp|QUEC_METTH|7-CYANO-7-DEAZAGUANINE synthase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 DNSEEFL 10
DNSEEFL
Sbjct: 136 DNSEEFL 142


>sp|RS15_METBU|SMALL ribosomal subunit protein uS15|Methanococcoides burtonii (strain

Query: 3 RDNSEE 8
RDNSEE
Sbjct: 76 RDNSEE 81


>sp|RL5_METMJ|LARGE ribosomal subunit protein uL5|Methanoculleus marisnigri (strain

Query: 1 LERDNSEEFL 10
L R+N+E+F+
Sbjct: 66 LRRENAEKFI 75


>sp|PUR8_METTH|ADENYLOSUCCINATE lyase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 LERDNSEEFL 10
++RDN EF+
Sbjct: 226 VQRDNHAEFI 235


>sp|COFD_METBF|2-PHOSPHO-L-LACTATE transferase|Methanosarcina barkeri (strain Fusaro /

Query: 2 ERDNSEEF 9
ERD ++EF
Sbjct: 263 ERDQADEF 270


>sp|NADK_METLZ|NAD kinase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 LERDNSEE 8
+ERD +EE
Sbjct: 94 IERDKAEE 101


>sp|QUEC_META3|7-CYANO-7-DEAZAGUANINE synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 DNSEEFL 10
DN+EEFL
Sbjct: 140 DNTEEFL 146


>sp|SYS_THEVO|SERINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 RDNSEEFL 10
RD+ EEFL
Sbjct: 134 RDDEEEFL 141


>sp|GPMA_METVS|2,3-BISPHOSPHOGLYCERATE-DEPENDENT phosphoglycerate mutase|Methanococcus vannielii (strain ATCC 35089

Query: 1 LERDNSEEFL 10
LE+ NSEE L
Sbjct: 191 LEKLNSEEVL 200




87|Sequence|431|440|SEEFLKREAR

>sp|ACDA1_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 SEEFLKR 7
+EEFLKR
Sbjct: 537 AEEFLKR 543


>sp|ACDA1_METBF|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina barkeri

Query: 1 SEEFLKR 7
+EEFLKR
Sbjct: 537 AEEFLKR 543


>sp|ACDA2_METMA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina mazei

Query: 1 SEEFLKR 7
+EEFLKR
Sbjct: 537 AEEFLKR 543


>sp|ACDA1_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 SEEFLKR 7
+EEFLKR
Sbjct: 537 AEEFLKR 543


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 SEEFLKR 7
+EEFLKR
Sbjct: 536 AEEFLKR 542


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 SEEFLKR 7
+EEFLKR
Sbjct: 536 AEEFLKR 542


>sp|ACDA1_METMA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina mazei

Query: 1 SEEFLKR 7
+EEFLKR
Sbjct: 537 AEEFLKR 543


>sp|SYT_PYRCJ|THREONINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 SEEFLKREAR 10
EEFL+R AR
Sbjct: 48 DEEFLRRVAR 57


>sp|Y2170_ARCFU|KELCH domain-containing protein AF_2170|Archaeoglobus fulgidus (strain

Query: 1 SEEFLKREA 9
SE+F +REA
Sbjct: 76 SEDFSQREA 84


>sp|Y1665_METJA|UPF0210 protein MJ1665|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SEEFLKREAR 10
SE+F+KR R
Sbjct: 439 SEKFIKRGGR 448


>sp|Y963_METJA|UNCHARACTERIZED protein MJ0963|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SEEFLKREAR 10
SEE+LK + R
Sbjct: 220 SEEYLKSKIR 229


>sp|CBIZ_METMA|ADENOSYLCOBINAMIDE amidohydrolase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 EEFLKREAR 10
EEF++ EAR
Sbjct: 48 EEFIREEAR 56


>sp|ACDA1_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus fulgidus

Query: 2 EEFLKR 7
EEFLKR
Sbjct: 527 EEFLKR 532


>sp|CUTA_SULAC|GLYCERALDEHYDE dehydrogenase large chain|Sulfolobus acidocaldarius (strain ATCC

Query: 1 SEEFLKREAR 10
SEE L EAR
Sbjct: 278 SEEMLASEAR 287


>sp|RSMA_PYRIL|PROBABLE ribosomal RNA small subunit|Pyrobaculum islandicum (strain DSM

Query: 3 EFLKREA 9
EFLKR+A
Sbjct: 62 EFLKRQA 68


>sp|CBIT_METJA|PROBABLE cobalt-precorrin-6B C(15)-methyltransferase

Query: 2 EEFLKREA 9
EEF++RE
Sbjct: 8 EEFIRREG 15


>sp|GCSPA_SACS2|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 2 EEFLKRE 8
E+F+KRE
Sbjct: 323 EQFIKRE 329


>sp|RSMA_THEKO|PROBABLE ribosomal RNA small subunit|Thermococcus kodakarensis (strain ATCC

Query: 2 EEFLKREA 9
EEFLK+E
Sbjct: 263 EEFLKKEG 270




88|Sequence|436|445|KREARANQLA

***** No hits found ******


89|Sequence|441|450|ANQLAEEIES

>sp|RL1_METTP|LARGE ribosomal subunit protein uL1|Methanothrix thermoacetophila (strain

Query: 1 ANQLAEEIES 10
A QLAE IES
Sbjct: 171 ARQLAENIES 180


>sp|CAS1B_PYRAE|CRISPR-ASSOCIATED endonuclease Cas1 2|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 QLAEEIES 10
QLAEE+E+
Sbjct: 242 QLAEELEA 249


>sp|MCRA_METFE|METHYL-COENZYME M reductase subunit alpha|Methanothermus fervidus

Query: 2 NQLAEEIES 10
++LA+EIES
Sbjct: 173 DELADEIES 181




90|Sequence|446|455|EEIESSAQYK

>sp|GGR_METPE|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 EIESSAQY 9
EIE+ AQY
Sbjct: 176 EIETCAQY 183




91|Sequence|451|460|SAQYKARVAL

>sp|RS10_THEVO|SMALL ribosomal subunit protein uS10|Thermoplasma volcanium (strain

Query: 2 AQYKARVAL 10
A YKAR++L
Sbjct: 2 ASYKARISL 10


>sp|GLMA_PYRHO|EXO-BETA-D-GLUCOSAMINIDASE horikoshii (strain ATCC 700860

Query: 2 AQYKARVAL 10
+Q+KARVA
Sbjct: 435 SQFKARVAF 443




92|Sequence|456|465|ARVALENDDR

>sp|MFNA_METLZ|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanocorpusculum labreanum

Query: 1 ARVALEND 8
A++ALEND
Sbjct: 179 AKIALEND 186


>sp|RL2_HALSA|LARGE ribosomal subunit protein uL2|Halobacterium salinarum (strain

Query: 1 ARVALENDDR 10
ARVA E+DD+
Sbjct: 57 ARVAFEDDDQ 66


>sp|RL2_HALS3|LARGE ribosomal subunit protein uL2|Halobacterium salinarum (strain

Query: 1 ARVALENDDR 10
ARVA E+DD+
Sbjct: 57 ARVAFEDDDQ 66


>sp|ATGT_AERPE|TRNA-GUANINE(15) transglycosylase|Aeropyrum pernix (strain ATCC 700893

Query: 1 ARVALENDDR 10
ARV +E D+R
Sbjct: 145 ARVMIEGDER 154


>sp|COFD_METBF|2-PHOSPHO-L-LACTATE transferase|Methanosarcina barkeri (strain Fusaro /

Query: 4 ALENDD 9
ALENDD
Sbjct: 180 ALENDD 185


>sp|NFI_HALSA|ENDONUCLEASE V|Halobacterium salinarum (strain ATCC 700922

Query: 2 RVALENDD 9
RVA+E DD
Sbjct: 186 RVAIEADD 193


>sp|G1PDH_METMA|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 ARVALENDD 9
ARV +EN D
Sbjct: 211 ARVVIENAD 219




93|Sequence|461|470|ENDDRSEEEK

***** No hits found ******


94|Sequence|466|475|SEEEKYTAVQ

>sp|APGM_METST|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosphaera stadtmanae (strain ATCC

Query: 1 SEEEKYTA 8
SEE K+TA
Sbjct: 181 SEEAKFTA 188


>sp|CSM4_THEON|CRISPR system Cms protein Csm4|Thermococcus onnurineus (strain NA1)

Query: 2 EEEKYTAVQ 10
EEE+YT +
Sbjct: 86 EEERYTTAK 94


>sp|PSB1_IGNH4|PROTEASOME subunit beta 1|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 EEKYTAV 9
EEKY+AV
Sbjct: 126 EEKYSAV 132




95|Sequence|471|480|YTAVQRNSSE

>sp|ILVC_METPE|KETOL-ACID reductoisomerase (NADP(+))|Methanosphaerula palustris (strain ATCC

Query: 1 YTAVQRNSSE 10
+TA++RN E
Sbjct: 301 FTALKRNDEE 310




96|Sequence|476|485|RNSSEREGHS

>sp|PIMT_METBU|PROTEIN-L-ISOASPARTATE O-methyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 1 RNSSEREGHS 10
RN+ ER G+S
Sbjct: 108 RNNLERAGYS 117




97|Sequence|481|490|REGHSINTRE

>sp|APEH_AERPE|ACYLAMINO-ACID-RELEASING enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 3 GHSINTRE 10
GH+INT E
Sbjct: 555 GHAINTME 562


>sp|TRM1_METAC|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosarcina acetivorans

Query: 2 EGHSINTRE 10
E H +NT+E
Sbjct: 303 EAHPLNTKE 311


>sp|TRM1_METMA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosarcina mazei (strain

Query: 2 EGHSINTRE 10
E H +NT+E
Sbjct: 303 EAHPLNTKE 311


>sp|RPO2N_METVS|DNA-DIRECTED RNA polymerase subunit Rpo2N|Methanococcus vannielii (strain ATCC

Query: 1 REGHSINTRE 10
RE H INT E
Sbjct: 258 REEHGINTTE 267


>sp|SYR_SULTO|ARGININE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 GHSINTR 9
GH +NTR
Sbjct: 144 GHEVNTR 150


>sp|FLPA_HALWD|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Haloquadratum walsbyi (strain DSM

Query: 1 REGHSINTRE 10
REG+ I TR+
Sbjct: 188 REGYIIQTRQ 197


>sp|RIFK_METM7|RIBOFLAVIN kinase|Methanococcus maripaludis (strain C7 /

Query: 1 REGHSIN 7
+ GHSIN
Sbjct: 81 KSGHSIN 87


>sp|SYV_PICTO|VALINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 1 REGHSINTRE 10
R HS+NT E
Sbjct: 318 RIKHSVNTHE 327


>sp|SYR_SACS2|ARGININE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 GHSINTR 9
GHS+N R
Sbjct: 145 GHSVNVR 151


>sp|DAPF_METAR|DIAMINOPIMELATE epimerase|Methanocella arvoryzae (strain DSM 22066

Query: 1 REGHSINTR 9
REGH++ R
Sbjct: 199 REGHNLRVR 207


>sp|FLPA_STAMF|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Staphylothermus marinus (strain

Query: 1 REGHSI 6
REGHSI
Sbjct: 76 REGHSI 81


>sp|SYV_THEVO|VALINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 4 HSINTRE 10
HS+NT E
Sbjct: 330 HSVNTHE 336


>sp|SYV_THEAC|VALINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 HSINTRE 10
HS+NT E
Sbjct: 330 HSVNTHE 336


>sp|KPTA_METMA|PROBABLE RNA 2'-phosphotransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 REGHSIN 7
R GHS+N
Sbjct: 103 RYGHSVN 109


>sp|AROC_METBU|CHORISMATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 4 HSINTRE 10
H++NT+E
Sbjct: 310 HTVNTKE 316




98|Sequence|486|495|INTRENKYIP

>sp|PSB2_SACI9|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain L.D.8.5 /

Query: 5 ENKYIP 10
ENK+IP
Sbjct: 190 ENKFIP 195


>sp|PSB2_SACI7|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 5 ENKYIP 10
ENK+IP
Sbjct: 190 ENKFIP 195


>sp|PSB2_SACI6|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain M.16.4 /

Query: 5 ENKYIP 10
ENK+IP
Sbjct: 190 ENKFIP 195


>sp|PSB2_SACI4|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain M.14.25 /

Query: 5 ENKYIP 10
ENK+IP
Sbjct: 190 ENKFIP 195


>sp|PSB2_SACI3|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain M.16.27)

Query: 5 ENKYIP 10
ENK+IP
Sbjct: 190 ENKFIP 195


>sp|PSB2_SACI2|PROTEASOME subunit beta 2|Saccharolobus islandicus (strain L.S.2.15 /

Query: 5 ENKYIP 10
ENK+IP
Sbjct: 190 ENKFIP 195


>sp|PSB1_SACI1|PROTEASOME subunit beta 1|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 5 ENKYIP 10
ENK+IP
Sbjct: 190 ENKFIP 195


>sp|PSB1_SACS9|PROTEASOME subunit beta 1|Saccharolobus solfataricus (strain 98/2) (Sulfolobus

Query: 5 ENKYIP 10
ENK+IP
Sbjct: 190 ENKFIP 195


>sp|PSB1_SACS2|PROTEASOME subunit beta 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 ENKYIP 10
ENK+IP
Sbjct: 190 ENKFIP 195


>sp|CS3HD_PYRFU|CRISPR-ASSOCIATED endonuclease Cas3-HD|Pyrococcus furiosus (strain ATCC 43587

Query: 5 ENKYIP 10
+NKYIP
Sbjct: 26 KNKYIP 31


>sp|EF1A_NATPD|ELONGATION factor 1-alpha|Natronomonas pharaonis (strain ATCC 35678

Query: 2 NTRENKYIP 10
NT + K+IP
Sbjct: 175 NTEDAKFIP 183


>sp|LEU3_SACS2|3-ISOPROPYLMALATE dehydrogenase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 TRENKYI 9
++ENKYI
Sbjct: 289 SKENKYI 295


>sp|SPSS2_METAR|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanocella arvoryzae (strain DSM 22066

Query: 1 INTRENKYI 9
+ TRE +YI
Sbjct: 78 VRTREEEYI 86


>sp|SYE_METKA|GLUTAMATE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 NTRENKYI 9
NTR KY+
Sbjct: 303 NTRRQKYV 310




99|Sequence|491|500|NKYIPPGQRN

>sp|HEM11_PYRCJ|GLUTAMYL-TRNA reductase 1|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 YIPPGQR 9
Y+PPG R
Sbjct: 240 YVPPGSR 246


>sp|RF1_AERPE|PEPTIDE chain release factor subunit|Aeropyrum pernix (strain ATCC 700893

Query: 3 YIPPGQ 8
YIPPG+
Sbjct: 38 YIPPGR 43


>sp|NOB1_METTH|ENDORIBONUCLEASE Nob1|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 NKYIPPGQRN 10
N Y+P G+ N
Sbjct: 20 NGYVPEGREN 29


>sp|RF1_SACS2|PEPTIDE chain release factor subunit|Saccharolobus solfataricus (strain

Query: 3 YIPPGQ 8
YIPPG+
Sbjct: 34 YIPPGR 39


>sp|KAE1_PYRNV|TRNA N6-adenosine threonylcarbamoyltransferase|Pyrobaculum

Query: 3 YIPPG 7
YIPPG
Sbjct: 31 YIPPG 35


>sp|SYM_THEPD|METHIONINE--TRNA ligase|Thermofilum pendens (strain DSM 2475

Query: 1 NKYIPPGQ 8
N+ +PPGQ
Sbjct: 525 NEAVPPGQ 532


>sp|CETZ_PYRFU|TUBULIN-LIKE protein CetZ|Pyrococcus furiosus (strain ATCC 43587

Query: 2 KYIPPGQR 9
K+IPP +R
Sbjct: 40 KHIPPDRR 47


>sp|MPGP_AERPE|MANNOSYL-3-PHOSPHOGLYCERATE phosphatase|Aeropyrum pernix (strain ATCC 700893

Query: 4 IPPGQR 9
+PPG+R
Sbjct: 62 VPPGER 67


>sp|CMR1A_PYRFU|CRISPR system Cmr subunit Cmr1-1|Pyrococcus furiosus (strain ATCC 43587

Query: 3 YIPPGQR 9
Y PPG R
Sbjct: 114 YYPPGSR 120


>sp|IF2G_SULTO|TRANSLATION initiation factor 2 subunit|Sulfurisphaera tokodaii (strain DSM

Query: 2 KYIPPGQRN 10
KYIP QR+
Sbjct: 200 KYIPTPQRD 208


>sp|RNP2_THEKO|RIBONUCLEASE P protein component 2|Thermococcus kodakarensis (strain ATCC

Query: 2 KYIPPGQRN 10
KY+PP R+
Sbjct: 6 KYLPPTLRD 14


>sp|GSA_PICTO|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Picrophilus torridus (strain ATCC 700027

Query: 1 NKYIPPGQ 8
N Y+PP Q
Sbjct: 384 NVYLPPSQ 391


>sp|FTR_METJA|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 KYIPPGQ 8
KY+PP +
Sbjct: 58 KYVPPSK 64


>sp|COBQ_METMJ|PROBABLE cobyric acid synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 YIPPG 7
Y+PPG
Sbjct: 276 YVPPG 280


>sp|Y646_METJA|UPF0305 protein MJ0646|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KYIPPGQRN 10
KY+PP +N
Sbjct: 34 KYLPPQYKN 42


>sp|Y1555_ARCFU|UNCHARACTERIZED protein AF_1555|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 YIPPGQRN 10
+ PP QRN
Sbjct: 43 FAPPDQRN 50




100|Sequence|496|505|PGQRNREVIS

>sp|Y2149_ARCFU|UPF0111 protein AF_2149|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GQRNREVI 9
G+R REV+
Sbjct: 12 GEREREVV 19


>sp|ILVC_PYRFU|KETOL-ACID reductoisomerase (NADP(+))|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PGQRNREV 8
PG+R REV
Sbjct: 136 PGRRVREV 143


>sp|LYSJ_SULTO|[LYSW]-AMINOADIPATE semialdehyde/glutamate semialdehyde transaminase|Sulfurisphaera

Query: 2 GQRNREVI 9
G RNR VI
Sbjct: 43 GHRNRRVI 50


>sp|TRUD_METBU|PROBABLE tRNA pseudouridine synthase D|Methanococcoides burtonii (strain DSM

Query: 1 PGQRNREVI 9
PG+ REVI
Sbjct: 354 PGEIEREVI 362




101|Sequence|501|510|REVISWGSGR

>sp|MVHA_METTM|F420-NON-REDUCING hydrogenase subunit A|Methanothermobacter marburgensis (strain ATCC

Query: 1 REVISWGS 8
RE+++WGS
Sbjct: 95 REIMNWGS 102


>sp|MVHA_METTH|F420-NON-REDUCING hydrogenase subunit A|Methanothermobacter thermautotrophicus

Query: 1 REVISWGS 8
RE+++WGS
Sbjct: 95 REIMNWGS 102


>sp|ABLA_METMP|L-LYSINE 2,3-aminomutase|Methanococcus maripaludis (strain DSM 14266

Query: 3 VISWGSGR 10
V+SWGS R
Sbjct: 356 VVSWGSDR 363


>sp|RL4_METBU|LARGE ribosomal subunit protein uL4|Methanococcoides burtonii (strain

Query: 5 SWGSGR 10
SWGSGR
Sbjct: 61 SWGSGR 66


>sp|SPSS2_METLZ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 REVISWGSG 9
+ VI+WG G
Sbjct: 34 KAVIAWGDG 42


>sp|SPSS1_METLZ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 1|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 REVISWGSG 9
+ +ISWG G
Sbjct: 34 KAMISWGDG 42


>sp|AGLB3_ARCFU|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase 3|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 VISWGSG 9
V+SWG+G
Sbjct: 212 VLSWGAG 218


>sp|CCA_THEKO|CCA-ADDING enzyme|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 EVISWGSGR 10
EV+ W +GR
Sbjct: 334 EVLGWNTGR 342


>sp|RL4_METMJ|LARGE ribosomal subunit protein uL4|Methanoculleus marisnigri (strain

Query: 5 SWGSGR 10
SWGSGR
Sbjct: 60 SWGSGR 65


>sp|PRIS_METAC|DNA primase small subunit PriS|Methanosarcina acetivorans (strain ATCC

Query: 1 REVISWGSGR 10
RE++++ SGR
Sbjct: 168 REIVNYVSGR 177


>sp|PRIS_METMA|DNA primase small subunit PriS|Methanosarcina mazei (strain ATCC

Query: 1 REVISWGSGR 10
RE++++ SGR
Sbjct: 168 REIVNYLSGR 177


>sp|PRIS_METBF|DNA primase small subunit PriS|Methanosarcina barkeri (strain Fusaro /

Query: 1 REVISWGSGR 10
RE++++ SGR
Sbjct: 168 REIVNYLSGR 177


>sp|PURP_METBU|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanococcoides burtonii (strain DSM

Query: 1 REVISWGSGR 10
REV+ W S R
Sbjct: 115 REVLEWESDR 124


>sp|MVHA_METFE|F420-NON-REDUCING hydrogenase subunit A|Methanothermus fervidus

Query: 1 REVISWGS 8
RE+++W S
Sbjct: 95 REIMNWAS 102


>sp|SPSS2_METBU|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanococcoides burtonii (strain DSM 6242

Query: 1 REVISWGSG 9
R ++ WG G
Sbjct: 39 RALVEWGDG 47


>sp|TRPC_PYRNV|INDOLE-3-GLYCEROL phosphate synthase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 REVISWG 7
REV +WG
Sbjct: 158 REVATWG 164


>sp|RL4_METHJ|LARGE ribosomal subunit protein uL4|Methanospirillum hungatei JF-1

Query: 4 ISWGSGR 10
+ WGSGR
Sbjct: 59 VGWGSGR 65


>sp|RL4_METB6|LARGE ribosomal subunit protein uL4|Methanoregula boonei (strain DSM

Query: 4 ISWGSGR 10
+ WGSGR
Sbjct: 59 VGWGSGR 65


>sp|RL4_METMA|LARGE ribosomal subunit protein uL4|Methanosarcina mazei (strain ATCC

Query: 6 WGSGR 10
WGSGR
Sbjct: 62 WGSGR 66


>sp|RL4_METBF|LARGE ribosomal subunit protein uL4|Methanosarcina barkeri (strain

Query: 6 WGSGR 10
WGSGR
Sbjct: 62 WGSGR 66


>sp|PDAD_HALSA|PYRUVOYL-DEPENDENT arginine decarboxylase|Halobacterium salinarum (strain ATCC

Query: 4 ISWGSG 9
I+WGSG
Sbjct: 6 IAWGSG 11


>sp|PDAD_HALS3|PYRUVOYL-DEPENDENT arginine decarboxylase|Halobacterium salinarum (strain ATCC 29341

Query: 4 ISWGSG 9
I+WGSG
Sbjct: 6 IAWGSG 11


>sp|RL4_METAC|LARGE ribosomal subunit protein uL4|Methanosarcina acetivorans (strain

Query: 6 WGSGR 10
WGSGR
Sbjct: 62 WGSGR 66


>sp|RL2_METMJ|LARGE ribosomal subunit protein uL2|Methanoculleus marisnigri (strain

Query: 2 EVISWGSG 9
+ +SWG+G
Sbjct: 78 DTVSWGTG 85


>sp|PURP_PYRHO|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrococcus horikoshii (strain ATCC

Query: 1 REVISWGSGR 10
+EV+ W S R
Sbjct: 91 KEVLKWESDR 100




102|Sequence|506|515|WGSGRQNSPR

>sp|RL31_HALLT|LARGE ribosomal subunit protein eL31|Halorubrum lacusprofundi (strain

Query: 1 WGSGRQNSP 9
W +GRQN P
Sbjct: 60 WANGRQNPP 68


>sp|DNAK_THEVO|CHAPERONE protein DnaK|Thermoplasma volcanium (strain ATCC 51530

Query: 2 GSGRQNSPR 10
GSG QNS +
Sbjct: 590 GSGNQNSSK 598


>sp|RL31_DESA1|LARGE ribosomal subunit protein eL31|Desulfurococcus amylolyticus

Query: 1 WGSGRQNSPR 10
W GR+ PR
Sbjct: 60 WSCGREKPPR 69


>sp|DNLI_HALSA|DNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 WGSGRQNS 8
WG GR+ S
Sbjct: 444 WGEGRRAS 451


>sp|DNLI_HALS3|DNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 1 WGSGRQNS 8
WG GR+ S
Sbjct: 444 WGEGRRAS 451


>sp|RL31_HALSA|LARGE ribosomal subunit protein eL31|Halobacterium salinarum (strain

Query: 1 WGSGRQNSPR 10
W G N PR
Sbjct: 60 WSEGNNNPPR 69


>sp|RL31_HALS3|LARGE ribosomal subunit protein eL31|Halobacterium salinarum (strain

Query: 1 WGSGRQNSPR 10
W G N PR
Sbjct: 60 WSEGNNNPPR 69


>sp|AROC_PYRAR|CHORISMATE synthase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 WGSGRQ 6
WG+GRQ
Sbjct: 247 WGAGRQ 252


>sp|DPOL_THEHY|DNA polymerase|Thermococcus hydrothermalis

Query: 1 WGSGRQNSPR 10
W SG + PR
Sbjct: 632 WISGEEKRPR 641


>sp|APGM2_ARCFU|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 WGSGRQNS 8
WG GR S
Sbjct: 205 WGGGRMPS 212


>sp|RS11_METLZ|SMALL ribosomal subunit protein uS11|Methanocorpusculum labreanum

Query: 2 GSGRQNSP 9
G+GRQ SP
Sbjct: 81 GNGRQRSP 88




103|Sequence|511|520|QNSPRMGQPG

>sp|Y1404_METJA|UNCHARACTERIZED protein MJ1404|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 QNSPRMGQP 9
+ PRMGQP
Sbjct: 204 EKVPRMGQP 212


>sp|Y3581_PYRAE|UPF0210 protein PAE3581|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 PRMGQPG 10
PR+G PG
Sbjct: 291 PRVGSPG 297


>sp|UPP_PYRIL|URACIL phosphoribosyltransferase|Pyrobaculum islandicum (strain DSM 4184

Query: 5 RMGQPG 10
R+GQPG
Sbjct: 151 RVGQPG 156


>sp|PYRDB_METKA|DIHYDROOROTATE dehydrogenase B (NAD(+)), catalytic|Methanopyrus kandleri (strain

Query: 3 SPRMGQPG 10
SPR G PG
Sbjct: 48 SPREGHPG 55


>sp|Y1033_PYRAR|UPF0210 protein Pars_1033|Pyrobaculum arsenaticum (strain DSM 13514

Query: 4 PRMGQPG 10
PR+G PG
Sbjct: 291 PRVGAPG 297


>sp|Y759_PYRIL|UPF0210 protein Pisl_0759|Pyrobaculum islandicum (strain DSM 4184

Query: 4 PRMGQPG 10
PR+G PG
Sbjct: 291 PRVGAPG 297


>sp|Y284_PYRHO|UPF0273 protein PH0284|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 NSPRMGQPG 10
N +MG+PG
Sbjct: 46 NGLKMGEPG 54


>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1 (strain

Query: 5 RMGQPG 10
RMG+PG
Sbjct: 572 RMGRPG 577


>sp|Y1590_THEKO|UPF0273 protein TK1590|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 NSPRMGQPG 10
N +MG+PG
Sbjct: 46 NGLQMGEPG 54


>sp|DP2L_METMJ|DNA polymerase II large subunit|Methanoculleus marisnigri (strain ATCC

Query: 5 RMGQPG 10
RMG+PG
Sbjct: 570 RMGRPG 575


>sp|DP2L_METLZ|DNA polymerase II large subunit|Methanocorpusculum labreanum (strain

Query: 5 RMGQPG 10
RMG+PG
Sbjct: 574 RMGRPG 579


>sp|Y1931_PYRFU|UPF0273 protein PF1931|Pyrococcus furiosus (strain ATCC 43587

Query: 2 NSPRMGQPG 10
N +MG+PG
Sbjct: 46 NGLQMGEPG 54


>sp|Y258_PYRAB|UPF0273 protein PYRAB02580|Pyrococcus abyssi (strain GE5 /

Query: 2 NSPRMGQPG 10
N +MG+PG
Sbjct: 46 NGLQMGEPG 54




104|Sequence|516|525|MGQPGSGSMP

>sp|HCGB_METJA|PYRIDINOL guanylyltransferase HcgB|Methanocaldococcus jannaschii (strain ATCC

Query: 1 MGQPGSGSM 9
+G PGSGSM
Sbjct: 105 LGAPGSGSM 113


>sp|SYR_METB6|ARGININE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 3 QPGSGSMP 10
QPG GS P
Sbjct: 98 QPGYGSFP 105


>sp|KCY_PYRNV|CYTIDYLATE kinase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 GQPGSG 7
GQPGSG
Sbjct: 8 GQPGSG 13


>sp|KCY_PYRIL|CYTIDYLATE kinase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 GQPGSG 7
GQPGSG
Sbjct: 8 GQPGSG 13


>sp|KCY_PYRCJ|CYTIDYLATE kinase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 GQPGSG 7
GQPGSG
Sbjct: 8 GQPGSG 13


>sp|KCY_PYRAR|CYTIDYLATE kinase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 GQPGSG 7
GQPGSG
Sbjct: 8 GQPGSG 13


>sp|KCY_PYRAE|CYTIDYLATE kinase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 GQPGSG 7
GQPGSG
Sbjct: 8 GQPGSG 13


>sp|KCY_METAR|CYTIDYLATE kinase|Methanocella arvoryzae (strain DSM 22066

Query: 2 GQPGSG 7
GQPGSG
Sbjct: 7 GQPGSG 12


>sp|HCGB_METMP|PYRIDINOL guanylyltransferase HcgB|Methanococcus maripaludis (strain DSM

Query: 1 MGQPGSGSM 9
+G PGSGS+
Sbjct: 104 LGIPGSGSL 112


>sp|FDHA2_METMP|F420-DEPENDENT formate dehydrogenase 2 subunit|Methanococcus maripaludis (strain

Query: 1 MGQPGSGSMP 10
+G+PG+G P
Sbjct: 315 LGRPGTGVNP 324


>sp|GATB_METVS|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanococcus vannielii (strain ATCC

Query: 1 MGQPGSGSMP 10
+G PG+ MP
Sbjct: 45 IGHPGAKPMP 54


>sp|GATB_METM5|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanococcus maripaludis (strain C5 /

Query: 1 MGQPGSGSMP 10
+G PG+ MP
Sbjct: 45 IGHPGAKPMP 54


>sp|GATB_METM6|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanococcus maripaludis (strain C6 /

Query: 1 MGQPGSGSMP 10
+G PG+ MP
Sbjct: 45 IGHPGAKPMP 54


>sp|GATB_METMP|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanococcus maripaludis (strain DSM

Query: 1 MGQPGSGSMP 10
+G PG+ MP
Sbjct: 45 IGHPGAKPMP 54


>sp|GATB_METM7|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanococcus maripaludis (strain C7 /

Query: 1 MGQPGSGSMP 10
+G PG+ MP
Sbjct: 45 IGHPGAKPMP 54


>sp|DAPAT_METS3|LL-DIAMINOPIMELATE aminotransferase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 MGQPGSGSMP 10
+G PGSG P
Sbjct: 373 VGTPGSGFGP 382


>sp|TOP6B_NATPD|TYPE 2 DNA topoisomerase 6|Natronomonas pharaonis (strain ATCC 35678

Query: 1 MGQPGSGSMP 10
+ QPG MP
Sbjct: 598 LDQPGGSGMP 607


>sp|FDHA1_METMP|F420-DEPENDENT formate dehydrogenase 1 subunit|Methanococcus maripaludis (strain

Query: 1 MGQPGSGSMP 10
+G+PG+G P
Sbjct: 314 IGKPGTGVNP 323


>sp|NTPTH_KORCO|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Korarchaeum cryptofilum (strain OPF8)

Query: 1 MGQPGSG 7
+G+PGSG
Sbjct: 10 IGRPGSG 16


>sp|KCY_METLZ|CYTIDYLATE kinase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 GQPGSGS 8
G PGSG+
Sbjct: 7 GSPGSGT 13


>sp|DAPAT_METTH|LL-DIAMINOPIMELATE aminotransferase|Methanothermobacter thermautotrophicus (strain

Query: 1 MGQPGSGSMP 10
+G PGSG P
Sbjct: 372 VGTPGSGFGP 381


>sp|DPCKG_ARCFU|GTP-DEPENDENT dephospho-CoA kinase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GQPGSG 7
GQPG G
Sbjct: 144 GQPGEG 149


>sp|Y920_THESM|UPF0200 protein TSIB_0920|Thermococcus sibiricus (strain DSM 12597

Query: 1 MGQPGSG 7
+G PGSG
Sbjct: 6 VGMPGSG 12


>sp|DPCKG_NATPD|GTP-DEPENDENT dephospho-CoA kinase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 GQPGSG 7
GQPG G
Sbjct: 140 GQPGEG 145


>sp|Y1012_METTP|UPF0200 protein Mthe_1012|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 MGQPGSG 7
+G PGSG
Sbjct: 7 VGMPGSG 13


>sp|BGAL_HALLT|BETA-GALACTOSIDASE Bga|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 QPGSGSM 9
QPG G+M
Sbjct: 326 QPGEGAM 332


>sp|NTPTH_METTH|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 GQPGSG 7
G+PGSG
Sbjct: 7 GRPGSG 12




105|Sequence|521|530|SGSMPSRSTS

***** No hits found ******


106|Sequence|526|535|SRSTSHTSDF

>sp|APGM_PYRCJ|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 STSHTSDF 10
STSH DF
Sbjct: 307 STSHDGDF 314


>sp|APGM_PYRAR|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 STSHTSDF 10
STSH DF
Sbjct: 307 STSHDGDF 314


>sp|APGM_PYRAE|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 STSHTSDF 10
STSH DF
Sbjct: 307 STSHDGDF 314


>sp|Y1782_THEKO|UNCHARACTERIZED serpin-like protein TK1782|Thermococcus kodakarensis (strain ATCC

Query: 3 STSHTSD 9
STSH SD
Sbjct: 32 STSHPSD 38




107|Sequence|531|540|HTSDFNPNSG

>sp|FDHA_METJA|F420-DEPENDENT formate dehydrogenase subunit alpha|Methanocaldococcus jannaschii

Query: 3 SDFNPNSG 10
+D NPNSG
Sbjct: 361 TDLNPNSG 368


>sp|PYRG_CALMQ|CTP synthase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 HTSDFNPNS 9
HT++ NPN+
Sbjct: 400 HTTEVNPNT 408


>sp|FEN_NITMS|FLAP endonuclease 1|Nitrosopumilus maritimus (strain SCM1)

Query: 3 SDFNPN 8
+DFNPN
Sbjct: 235 TDFNPN 240


>sp|PUR2_METBU|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcoides burtonii (strain DSM 6242

Query: 3 SDFNPNSG 10
+DF PN+G
Sbjct: 219 NDFGPNTG 226


>sp|HUTI_PYRAR|IMIDAZOLONEPROPIONASE arsenaticum (strain DSM 13514

Query: 3 SDFNPNS 9
+DF+PNS
Sbjct: 305 TDFSPNS 311


>sp|BSUHB_METJA|FRUCTOSE-1,6-BISPHOSPHATASE/INOSITOL-1-MONOPHOSPHATASE jannaschii (strain ATCC 43067

Query: 4 DFNPNS 9
DFNPN+
Sbjct: 141 DFNPNN 146


>sp|PYRG_SULTO|CTP synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 HTSDFNPNS 9
HT++ +PN+
Sbjct: 403 HTTEVDPNT 411


>sp|HUTI_HALMA|IMIDAZOLONEPROPIONASE marismortui (strain ATCC 43049

Query: 3 SDFNPN 8
+DFNPN
Sbjct: 318 TDFNPN 323


>sp|DNAJ_PICTO|CHAPERONE protein DnaJ|Picrophilus torridus (strain ATCC 700027

Query: 2 TSDFNPNSG 10
T+DFN SG
Sbjct: 70 TTDFNAGSG 78


>sp|GATD_METS3|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanobrevibacter smithii (strain ATCC

Query: 1 HTSDFNPN 8
H+ D NPN
Sbjct: 277 HSVDINPN 284


>sp|HEM3_NITMS|PROBABLE porphobilinogen deaminase|Nitrosopumilus maritimus (strain SCM1)

Query: 2 TSDFNPNSG 10
T DF+P+ G
Sbjct: 184 TDDFSPSPG 192


>sp|PSB_HALSA|PROTEASOME subunit beta|Halobacterium salinarum (strain ATCC 700922

Query: 5 FNPNSG 10
FNPN+G
Sbjct: 2 FNPNNG 7


>sp|PSB_HALS3|PROTEASOME subunit beta|Halobacterium salinarum (strain ATCC 29341

Query: 5 FNPNSG 10
FNPN+G
Sbjct: 2 FNPNNG 7




108|Sequence|536|545|NPNSGSDQRV

>sp|Y132_PYRHO|PUTATIVE ABC transporter ATP-binding protein|Pyrococcus horikoshii (strain

Query: 2 PNSGSDQR 9
PN+G D+R
Sbjct: 161 PNTGLDER 168


>sp|Y130_PYRAB|PUTATIVE ABC transporter ATP-binding protein|Pyrococcus abyssi (strain GE5 /

Query: 2 PNSGSDQR 9
PN+G D+R
Sbjct: 161 PNTGLDER 168




109|Sequence|541|550|SDQRVVNGGV

>sp|TRPCD_ARCFU|TRYPTOPHAN biosynthesis protein TrpCD|Archaeoglobus fulgidus (strain ATCC

Query: 1 SDQRVVNGGV 10
+D VVNGGV
Sbjct: 445 TDIAVVNGGV 454


>sp|RGYR1_SACS2|REVERSE gyrase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 SDQRVVNGGV 10
S QR+ NG V
Sbjct: 24 SSQRLFNGSV 33


>sp|TTRA_ARCFU|TETRATHIONATE reductase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 VVNGGV 10
VVNGGV
Sbjct: 162 VVNGGV 167


>sp|LYSZ_PYRNV|PUTATIVE [LysW]-aminoadipate/[LysW]-glutamate kinase|Pyrobaculum

Query: 3 QRVVNGG 9
QRVV+GG
Sbjct: 122 QRVVDGG 128


>sp|LYSZ_PYRIL|PUTATIVE [LysW]-aminoadipate/[LysW]-glutamate kinase|Pyrobaculum islandicum

Query: 3 QRVVNGG 9
QRVV+GG
Sbjct: 122 QRVVDGG 128


>sp|AGLI_HALVD|GLYCOSYLTRANSFERASE AglI|Haloferax volcanii (strain ATCC 29605

Query: 2 DQRVVNGG 9
D+R+V+GG
Sbjct: 175 DERLVSGG 182


>sp|LYSZ_PYRCJ|PUTATIVE [LysW]-aminoadipate/[LysW]-glutamate kinase|Pyrobaculum

Query: 3 QRVVNGG 9
QRVV+GG
Sbjct: 122 QRVVDGG 128




110|Sequence|546|555|VNGGVPWPSP

>sp|BTUCA_HALSA|COBALAMIN import system permease protein|Halobacterium salinarum (strain

Query: 1 VNGGVPWPS 9
V+GG+PWP+
Sbjct: 65 VSGGLPWPA 73


>sp|BTUCA_HALS3|COBALAMIN import system permease protein|Halobacterium salinarum (strain

Query: 1 VNGGVPWPS 9
V+GG+PWP+
Sbjct: 65 VSGGLPWPA 73


>sp|COBD_AERPE|PROBABLE cobalamin biosynthesis protein CobD|Aeropyrum pernix (strain ATCC

Query: 1 VNGGVPWP 8
VNGG P+P
Sbjct: 279 VNGGAPYP 286


>sp|PDXS_PYRAE|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Pyrobaculum aerophilum (strain

Query: 4 GVPWPSP 10
GV WP P
Sbjct: 31 GVAWPKP 37


>sp|RTCB_PYRFU|TRNA-SPLICING ligase RtcB|Pyrococcus furiosus (strain ATCC 43587

Query: 4 GVPWP 8
G+PWP
Sbjct: 749 GIPWP 753


>sp|PUS10_THEPD|TRNA pseudouridine synthase Pus10|Thermofilum pendens (strain DSM 2475

Query: 6 PWPSP 10
PWP P
Sbjct: 225 PWPQP 229


>sp|RTCB_THEKO|TRNA-SPLICING ligase RtcB|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 GVPWP 8
GVPWP
Sbjct: 262 GVPWP 266


>sp|DYR1_HALMA|DIHYDROFOLATE reductase 1|Haloarcula marismortui (strain ATCC 43049

Query: 1 VNGGVPWPSP 10
++GGVPW P
Sbjct: 23 LDGGVPWHYP 32


>sp|FLAH_SULAC|ARCHAEAL flagellar ATP-binding protein FlaH|Sulfolobus acidocaldarius

Query: 3 GGVPWPS 9
GG+P+P+
Sbjct: 15 GGIPYPA 21


>sp|XPD_SULAC|ATP-DEPENDENT DNA helicase XPD|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 GVPWPSP 10
G+P+P P
Sbjct: 470 GIPYPPP 476


>sp|RL10E_THEVO|LARGE ribosomal subunit protein uL16|Thermoplasma volcanium (strain

Query: 3 GGVPWP 8
GGVP+P
Sbjct: 24 GGVPYP 29


>sp|SYL_THEKO|LEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 6 PWPSP 10
PWP P
Sbjct: 819 PWPEP 823


>sp|RL10E_PICTO|LARGE ribosomal subunit protein uL16|Picrophilus torridus (strain ATCC

Query: 3 GGVPWP 8
GGVP+P
Sbjct: 24 GGVPYP 29


>sp|IF6_CENSY|TRANSLATION initiation factor 6|Cenarchaeum symbiosum (strain A)

Query: 1 VNGGVPWPS 9
+NGG+P+ S
Sbjct: 183 INGGIPFVS 191


>sp|PYRE_SULAC|OROTATE phosphoribosyltransferase|Sulfolobus acidocaldarius (strain ATCC

Query: 1 VNGGVPWPS 9
V GGVP+ S
Sbjct: 65 VTGGVPFAS 73


>sp|T1SH_METJA|TYPE I restriction enzyme MjaIX|Methanocaldococcus jannaschii (strain

Query: 5 VPWPSP 10
+P+PSP
Sbjct: 168 IPYPSP 173


>sp|DABA_NATPD|PROBABLE inorganic carbon transporter subunit|Natronomonas pharaonis (strain

Query: 3 GGVPWPSP 10
G PWP P
Sbjct: 135 GQAPWPMP 142


>sp|RL10E_THEAC|LARGE ribosomal subunit protein uL16|Thermoplasma acidophilum (strain

Query: 3 GGVPWP 8
GGVP+P
Sbjct: 24 GGVPYP 29


>sp|PYLS_METTE|PYRROLYSINE--TRNA ligase|Methanosarcina thermophila

Query: 1 VNGGVPWPSP 10
++GG P P P
Sbjct: 197 ISGGFPRPIP 206


>sp|PYRE_AERPE|OROTATE phosphoribosyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 3 GGVPWPS 9
GG+PW +
Sbjct: 76 GGLPWAA 82


>sp|TIAS_STAMF|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Staphylothermus marinus

Query: 1 VNGGVPWPS 9
+N GVPW +
Sbjct: 49 LNPGVPWKT 57


>sp|SYL_METTP|LEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 6 PWPSP 10
PWP P
Sbjct: 791 PWPVP 795


>sp|CAS3_METTH|CRISPR-ASSOCIATED nuclease/helicase Cas3|Methanothermobacter thermautotrophicus

Query: 3 GGVPW 7
GG PW
Sbjct: 277 GGAPW 281


>sp|RL10_METKA|LARGE ribosomal subunit protein uL10|Methanopyrus kandleri (strain AV19 /

Query: 1 VNGGVPWP 8
VN GVP P
Sbjct: 266 VNAGVPVP 273


>sp|MALG_THELN|TREHALOSE/MALTOSE transport system permease protein|Thermococcus litoralis (strain

Query: 1 VNGGVPWPS 9
V+G +PW S
Sbjct: 235 VHGEIPWGS 243


>sp|SYP_AERPE|PROLINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 VNG---GVPWP 8
VNG G PWP
Sbjct: 448 VNGKVLGTPWP 458




111|Sequence|551|560|PWPSPCPSPS

>sp|SYL_THEKO|LEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PWPSPCP 7
PWP P P
Sbjct: 819 PWPEPVP 825


>sp|SYL_PYRCJ|LEUCINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 PWPSPCPSPS 10
PWP P P+
Sbjct: 800 PWPKLSPDPA 809


>sp|LYSY_CALMQ|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 WPSPCPSP 9
WP P P P
Sbjct: 117 WPQPHPYP 124


>sp|LYSY_PYRCJ|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 WPSPCPSP 9
WP P P P
Sbjct: 115 WPQPHPYP 122


>sp|LYSY_PYRAE|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 WPSPCPSP 9
WP P P P
Sbjct: 114 WPQPHPYP 121


>sp|LYSY_PYRIL|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 WPSPCPSP 9
WP P P P
Sbjct: 115 WPQPHPYP 122


>sp|LYSY_PYRNV|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 WPSPCPSP 9
WP P P P
Sbjct: 115 WPQPHPYP 122


>sp|PDXS_PYRAR|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Pyrobaculum arsenaticum

Query: 2 WPSPCPS 8
WP P P+
Sbjct: 34 WPRPYPA 40


>sp|PURP_NITMS|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 PWPSPCPSPS 10
P P P +PS
Sbjct: 120 PMPKPVTNPS 129


>sp|TRPD_META3|ANTHRANILATE phosphoribosyltransferase|Methanococcus aeolicus (strain ATCC

Query: 3 PSPCPSP 9
P PC SP
Sbjct: 252 PIPCNSP 258


>sp|TRPD_THEKO|ANTHRANILATE phosphoribosyltransferase|Thermococcus kodakarensis (strain ATCC

Query: 3 PSPCPSP 9
P PC SP
Sbjct: 251 PLPCSSP 257


>sp|ILVD_PYRFU|DIHYDROXY-ACID dehydratase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PWPSPCPSP 9
PW P+P
Sbjct: 212 PWNGTAPAP 220


>sp|COXX_HALMA|PROTOHEME IX farnesyltransferase|Haloarcula marismortui (strain ATCC 43049

Query: 3 PSPCPSPS 10
P+P P P+
Sbjct: 154 PTPAPEPA 161


>sp|NADA_METBF|QUINOLINATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 PWPSPCPS 8
PW CP+
Sbjct: 166 PWEGHCPT 173


>sp|SYM_METHJ|METHIONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 PSPCPSPS 10
P P P+PS
Sbjct: 519 PGPLPAPS 526


>sp|SYL_THEON|LEUCINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 2 WPSPCPS 8
WP P P+
Sbjct: 820 WPEPNPA 826


>sp|Y189_METAR|UPF0313 protein UNCMA_01890|Methanocella arvoryzae (strain DSM 22066

Query: 2 WPSPCPS 8
+P PCP+
Sbjct: 372 YPEPCPN 378


>sp|NADA_METMA|QUINOLINATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PWPSPCPS 8
PW CP+
Sbjct: 166 PWEGHCPT 173


>sp|NADA1_METAC|QUINOLINATE synthase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PWPSPCPS 8
PW CP+
Sbjct: 166 PWEGHCPT 173


>sp|R15PI_HALVD|RIBOSE 1,5-bisphosphate isomerase|Haloferax volcanii (strain ATCC 29605

Query: 1 PWPSPCP 7
PW P P
Sbjct: 313 PWAEPSP 319


>sp|BGAL_HALLT|BETA-GALACTOSIDASE Bga|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 WPSPCPSP 9
WP CP P
Sbjct: 320 WPPHCPQP 327


>sp|NADM_THEAC|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PWPSPCPSP 9
PW + P P
Sbjct: 145 PWENDVPDP 153


>sp|Y1684_METTH|UNCHARACTERIZED protein MTH_1684|Methanothermobacter thermautotrophicus (strain

Query: 2 WPSPCPS 8
+P PCP+
Sbjct: 103 YPGPCPN 109


>sp|IF2G_METTH|TRANSLATION initiation factor 2 subunit|Methanothermobacter thermautotrophicus

Query: 5 PCPSP 9
PCP P
Sbjct: 118 PCPQP 122


>sp|ACDA1_METKA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanopyrus

Query: 3 PSPCPSPS 10
P PCP+ S
Sbjct: 28 PLPCPTVS 35


>sp|FAU1_HALSA|PROBABLE ribonuclease FAU-1|Halobacterium salinarum (strain ATCC 700922

Query: 2 WPSPCP 7
WP P P
Sbjct: 86 WPDPVP 91


>sp|FAU1_HALS3|PROBABLE ribonuclease FAU-1|Halobacterium salinarum (strain ATCC 29341

Query: 2 WPSPCP 7
WP P P
Sbjct: 86 WPDPVP 91


>sp|IF2G_METJA|TRANSLATION initiation factor 2 subunit|Methanocaldococcus jannaschii (strain

Query: 5 PCPSP 9
PCP P
Sbjct: 120 PCPQP 124


>sp|SYL_PYRAE|LEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PWPSPCPSP 9
PWP P P
Sbjct: 800 PWPQLRPDP 808


>sp|Y3242_HALS3|UPF0284 protein OE_3242F|Halobacterium salinarum (strain ATCC 29341

Query: 3 PSPCPSPS 10
PS CP+P+
Sbjct: 60 PSGCPTPA 67


>sp|Y1572_HALSA|UPF0284 protein VNG_1572C|Halobacterium salinarum (strain ATCC 700922

Query: 3 PSPCPSPS 10
PS CP+P+
Sbjct: 60 PSGCPTPA 67


>sp|Y085_METJA|UNCHARACTERIZED lipoprotein MJ0085|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 PCPSPS 10
PCP P+
Sbjct: 114 PCPKPN 119


>sp|SYV_ARCFU|VALINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PSPCP 7
P PCP
Sbjct: 429 PEPCP 433


>sp|PYLS_METBF|PYRROLYSINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 PWPSPCPSPS 10
P P+ P+PS
Sbjct: 145 PVPTSAPAPS 154


>sp|TRPB2_METTH|TRYPTOPHAN synthase beta chain 2|Methanothermobacter thermautotrophicus

Query: 3 PSPCPSP 9
PSP P P
Sbjct: 24 PSPLPEP 30


>sp|IF2G_METKA|TRANSLATION initiation factor 2 subunit|Methanopyrus kandleri (strain AV19 /

Query: 5 PCPSP 9
PCP P
Sbjct: 119 PCPQP 123




112|Sequence|556|565|CPSPSSRPPS

>sp|GLNA_PYRWO|GLUTAMINE synthetase|Pyrococcus woesei

Query: 1 CPSPSSRP 8
CP PS+ P
Sbjct: 321 CPDPSANP 328


>sp|GLNA_PYRFU|GLUTAMINE synthetase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 CPSPSSRP 8
CP PS+ P
Sbjct: 321 CPDPSANP 328


>sp|GLNA_THEKO|GLUTAMINE synthetase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 CPSPSSRP 8
CP PS+ P
Sbjct: 325 CPDPSANP 332


>sp|GLNA_PYRAB|GLUTAMINE synthetase|Pyrococcus abyssi (strain GE5 /

Query: 1 CPSPSSRP 8
CP PS+ P
Sbjct: 321 CPDPSANP 328


>sp|HYD2G_PYRFU|SULFHYDROGENASE 2 subunit gamma|Pyrococcus furiosus (strain ATCC 43587

Query: 1 CPSPSSRP 8
C SP+ RP
Sbjct: 60 CSSPTRRP 67


>sp|Y856_METTH|METALLOPROTEASE MTH_856|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 5 SSRPPS 10
SSRPPS
Sbjct: 107 SSRPPS 112


>sp|SYM_METBF|METHIONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 PSPSSRP 8
P PSS+P
Sbjct: 2 PEPSSKP 8


>sp|QUEE_METTH|7-CARBOXY-7-DEAZAGUANINE synthase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 CPSPSSRPPS 10
C +P SR PS
Sbjct: 41 CDTPESRDPS 50


>sp|FLAA_METVO|FLAGELLIN A|Methanococcus voltae

Query: 2 PSPSSRP 8
PSP S+P
Sbjct: 85 PSPGSKP 91




113|Sequence|561|570|SRPPSRYQSG

>sp|HCP_METMA|HYDROXYLAMINE reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SRPPSRYQSG 10
S+PP + +SG
Sbjct: 350 SKPPEQLESG 359


>sp|TOP1_PYRFU|DNA topoisomerase 1|Pyrococcus furiosus (strain ATCC 43587

Query: 1 SRPPSRY 7
++PP+RY
Sbjct: 844 TKPPARY 850


>sp|RPO1N_METVS|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanococcus vannielii (strain ATCC

Query: 3 PPSRYQSG 10
PP+R++SG
Sbjct: 288 PPARHRSG 295


>sp|RPO1N_METTH|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanothermobacter thermautotrophicus

Query: 3 PPSRYQSG 10
PP+R++SG
Sbjct: 281 PPARHRSG 288


>sp|ILVD_SULTO|DIHYDROXY-ACID dehydratase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 PPSRYQSG 10
PP +Y+SG
Sbjct: 533 PPPKYKSG 540


>sp|ACDA_METBU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanococcoides

Query: 4 PSRYQSG 10
PSR++SG
Sbjct: 569 PSRFKSG 575


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 3 PPSRYQSG 10
PP+R++SG
Sbjct: 357 PPARHRSG 364


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 3 PPSRYQSG 10
PP+R++SG
Sbjct: 357 PPARHRSG 364


>sp|RPO1N_METJA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanocaldococcus jannaschii (strain

Query: 3 PPSRYQSG 10
PP++++SG
Sbjct: 288 PPAKHRSG 295


>sp|RPO1N_METTW|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanothermobacter thermautotrophicus

Query: 3 PPSRYQSG 10
PP+R++SG
Sbjct: 281 PPARHRSG 288


>sp|RPO1N_THEAC|DNA-DIRECTED RNA polymerase subunit Rpo1N|Thermoplasma acidophilum (strain ATCC

Query: 3 PPSRYQSG 10
PP+R++SG
Sbjct: 287 PPARHRSG 294


>sp|TOP1_PYRAB|DNA topoisomerase 1|Pyrococcus abyssi (strain GE5 /

Query: 1 SRPPSRY 7
++PP+RY
Sbjct: 471 TKPPARY 477


>sp|TOP1_PYRHO|DNA topoisomerase 1|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 SRPPSRY 7
++PP+RY
Sbjct: 471 TKPPARY 477


>sp|TOP1_ARCFU|DNA topoisomerase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SRPPSRYQS 9
++PP RY +
Sbjct: 456 TKPPGRYSA 464


>sp|RPO1N_SACS2|DNA-DIRECTED RNA polymerase subunit Rpo1N|Saccharolobus solfataricus (strain

Query: 3 PPSRYQSG 10
PPS+++SG
Sbjct: 285 PPSKHRSG 292


>sp|RPO1N_SACSH|DNA-DIRECTED RNA polymerase subunit Rpo1N|Saccharolobus shibatae (strain ATCC

Query: 3 PPSRYQSG 10
PPS+++SG
Sbjct: 285 PPSKHRSG 292


>sp|ILVD_SULAC|DIHYDROXY-ACID dehydratase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 SRPPSRYQSG 10
S P RY+SG
Sbjct: 529 SPPEPRYKSG 538


>sp|RFCL_METMJ|REPLICATION factor C large subunit|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 PPSRYQ 8
PPSR+Q
Sbjct: 324 PPSRWQ 329


>sp|RPO1N_THECE|DNA-DIRECTED RNA polymerase subunit Rpo1N|Thermococcus celer

Query: 3 PPSRYQSG 10
PP++++SG
Sbjct: 291 PPAKHKSG 298


>sp|TOP1_METTH|DNA topoisomerase 1|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 SRPPSRYQSG 10
++PP+RY
Sbjct: 469 TKPPARYNEA 478


>sp|ILVD_SACS2|DIHYDROXY-ACID dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 SRPPSRYQSG 10
S P RY+SG
Sbjct: 528 SPPSPRYKSG 537


>sp|ILVD_SACI7|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 SRPPSRYQSG 10
S P RY+SG
Sbjct: 528 SPPSPRYKSG 537


>sp|ILVD_SACI1|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 SRPPSRYQSG 10
S P RY+SG
Sbjct: 528 SPPSPRYKSG 537


>sp|ILVD_SACI6|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 SRPPSRYQSG 10
S P RY+SG
Sbjct: 528 SPPSPRYKSG 537


>sp|ILVD_SACI4|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 SRPPSRYQSG 10
S P RY+SG
Sbjct: 528 SPPSPRYKSG 537


>sp|ILVD_SACI3|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 SRPPSRYQSG 10
S P RY+SG
Sbjct: 528 SPPSPRYKSG 537


>sp|ILVD_SACI2|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 SRPPSRYQSG 10
S P RY+SG
Sbjct: 528 SPPSPRYKSG 537


>sp|RNH2_PYRAE|RIBONUCLEASE HII|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 PSRYQSG 10
P RY+SG
Sbjct: 107 PKRYESG 113




114|Sequence|566|575|RYQSGPNSLP

>sp|ACDA_METBU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanococcoides

Query: 1 RYQSGPNSLP 10
RY++G +LP
Sbjct: 281 RYKTGDRTLP 290


>sp|XACI_HALVD|XYLOSE/ARABINOSE import permease protein XacI|Haloferax volcanii (strain ATCC 29605

Query: 2 YQSGPNSL 9
YQS PNSL
Sbjct: 194 YQSLPNSL 201


>sp|CHEF2_HALS3|TAXIS protein CheF2|Halobacterium salinarum (strain ATCC 29341

Query: 2 YQSGPNS 8
Y SGPN+
Sbjct: 230 YSSGPNA 236


>sp|Y963_METKA|MEMO1 family protein MK0963|Methanopyrus kandleri (strain AV19 /

Query: 1 RYQSGPNSLP 10
R++ GP LP
Sbjct: 28 RHELGPGDLP 37




115|Sequence|571|580|PNSLPPRAAT

>sp|RS3A_METKA|SMALL ribosomal subunit protein eS1|Methanopyrus kandleri (strain AV19 /

Query: 1 PNSLPPRAA 9
PN LPP A
Sbjct: 191 PNGLPPYEA 199


>sp|TMG10_PYRAB|TRNA (guanine(10)-N2)-dimethyltransferase|Pyrococcus abyssi (strain GE5

Query: 1 PNSLPPRAA 9
P +LPPR A
Sbjct: 162 PIALPPRIA 170


>sp|Y1105_THEAC|UNCHARACTERIZED protein Ta1105|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PNSLPPRAA 9
PN LPP A
Sbjct: 65 PNGLPPGEA 73


>sp|TDH_PYRHO|L-THREONINE 3-dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PNSLPPRAAT 10
P S+PP AT
Sbjct: 140 PKSIPPEYAT 149


>sp|TDH_PYRAB|L-THREONINE 3-dehydrogenase|Pyrococcus abyssi (strain GE5 /

Query: 1 PNSLPPRAAT 10
P S+PP AT
Sbjct: 140 PKSIPPEYAT 149


>sp|UBIX_AERPE|FLAVIN prenyltransferase UbiX|Aeropyrum pernix (strain ATCC 700893

Query: 1 PNSLPPRAA 9
P+SLP RAA
Sbjct: 106 PSSLPARAA 114


>sp|MTRB_META3|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit B|Methanococcus aeolicus (strain ATCC

Query: 2 NSLPPRAA 9
NSL PR+A
Sbjct: 52 NSLDPRSA 59


>sp|TRUA_PYRAE|TRNA pseudouridine synthase A|Pyrobaculum aerophilum (strain ATCC

Query: 1 PNSLPPR 7
PNSL PR
Sbjct: 21 PNSLEPR 27


>sp|PYRC_SULTO|DIHYDROOROTASE tokodaii (strain DSM 16993

Query: 1 PNSLPP 6
PN+LPP
Sbjct: 84 PNTLPP 89


>sp|PYRC_METMA|DIHYDROOROTASE mazei (strain ATCC BAA-159

Query: 1 PNSLPP 6
PN++PP
Sbjct: 93 PNTIPP 98


>sp|PYRC_METAC|DIHYDROOROTASE acetivorans (strain ATCC 35395

Query: 1 PNSLPP 6
PN++PP
Sbjct: 93 PNTIPP 98


>sp|SLAA_ACIAM|S-LAYER protein A|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 1 PNSLPP 6
PN+LPP
Sbjct: 135 PNTLPP 140


>sp|AMID_SACS2|AMIDASE solfataricus (strain ATCC 35092

Query: 1 PNSLPP 6
P+SLPP
Sbjct: 258 PDSLPP 263




116|Sequence|576|585|PRAATPTRPP

>sp|Y1312_METJA|UPF0026 protein MJ1312|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 TPTRPP 10
TP RPP
Sbjct: 204 TPIRPP 209




117|Sequence|581|590|PTRPPSRPPS

>sp|DAPAL_PYRFU|UNCHARACTERIZED DapA-like lyase PF0657|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PTRPPSRPP 9
P RP RPP
Sbjct: 263 PIRPVLRPP 271


>sp|Y1625_ARCFU|UNCHARACTERIZED protein AF_1625|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PTRPPSRPP 9
PT+PP+ P
Sbjct: 408 PTKPPAESP 416


>sp|IF2G_THEKO|TRANSLATION initiation factor 2 subunit|Thermococcus kodakarensis (strain ATCC

Query: 1 PTRPPSRPP 9
P R P++PP
Sbjct: 201 PKRDPNKPP 209


>sp|SYK_AERPE|LYSINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 PTRPPSRPPS 10
P+ PP++PPS
Sbjct: 369 PSNPPAKPPS 378


>sp|IORA_PYRHO|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus horikoshii (strain ATCC

Query: 1 PTRPPSRPPS 10
P RPPS P+
Sbjct: 378 PPRPPSLCPA 387


>sp|IF2G_PYRAB|TRANSLATION initiation factor 2 subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 PTRPPSRPP 9
P R P++PP
Sbjct: 202 PKRDPNKPP 210


>sp|IORA_PYRAB|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus abyssi (strain GE5 /

Query: 1 PTRPPSRPPS 10
P RPPS P+
Sbjct: 378 PPRPPSLCPA 387


>sp|IF2G_PYRHO|TRANSLATION initiation factor 2 subunit|Pyrococcus horikoshii (strain ATCC

Query: 1 PTRPPSRPP 9
P R P++PP
Sbjct: 202 PKRDPNKPP 210




118|Sequence|586|595|SRPPSRPSRP

>sp|PAN2_HALVD|PROTEASOME-ACTIVATING nucleotidase 2|Haloferax volcanii (strain ATCC 29605

Query: 1 SRPPSRPSRP 10
SR PS P RP
Sbjct: 2 SRSPSLPERP 11


>sp|PAN2_HALSA|PROTEASOME-ACTIVATING nucleotidase 2|Halobacterium salinarum (strain ATCC 700922

Query: 1 SRPPSRPSRP 10
SR PS P RP
Sbjct: 2 SRSPSLPDRP 11


>sp|PYLC_METBF|3-METHYL-D-ORNITHINE--L-LYSINE ligase|Methanosarcina barkeri (strain Fusaro /

Query: 3 PPSRPSRP 10
P RPS+P
Sbjct: 119 PQDRPSKP 126




119|Sequence|591|600|RPSRPPSHPS

>sp|DP2S_METJA|DNA polymerase II small subunit|Methanocaldococcus jannaschii (strain

Query: 1 RPSRPPSHP 9
RP+ PP P
Sbjct: 308 RPALPPKEP 316


>sp|LEU1_ARCFU|PROBABLE 2-isopropylmalate synthase|Archaeoglobus fulgidus (strain ATCC

Query: 5 PPSHP 9
PP+HP
Sbjct: 274 PPNHP 278


>sp|Y2262_NATPD|PUTATIVE heme-binding protein NP_2262A|Natronomonas pharaonis (strain ATCC

Query: 1 RPSRPPSH 8
RPS PSH
Sbjct: 281 RPSTDPSH 288


>sp|PYLC_METBF|3-METHYL-D-ORNITHINE--L-LYSINE ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 RPSRPP 6
RPS+PP
Sbjct: 122 RPSKPP 127


>sp|PURL_PYRAE|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrobaculum aerophilum (strain ATCC 51768

Query: 5 PPSHP 9
PPSHP
Sbjct: 121 PPSHP 125


>sp|GVPH_HALMT|GAS vesicle protein H|Haloferax mediterranei (strain ATCC 33500

Query: 2 PSRPPSHPS 10
P RP HPS
Sbjct: 46 PDRPSDHPS 54


>sp|Y300_METJA|UNCHARACTERIZED HTH-type transcriptional regulator MJ0300|Methanocaldococcus

Query: 5 PPSHP 9
PP+HP
Sbjct: 171 PPNHP 175


>sp|MPTA_AERPE|GTP cyclohydrolase MptA|Aeropyrum pernix (strain ATCC 700893

Query: 2 PSRPPSH 8
PSR PSH
Sbjct: 163 PSRAPSH 169


>sp|CBIA_HALSA|COBYRINATE a,c-diamide synthase|Halobacterium salinarum (strain ATCC 700922

Query: 2 PSRPPSH 8
P RPP+H
Sbjct: 228 PPRPPAH 234


>sp|DP2L_CENSY|DNA polymerase II large subunit|Cenarchaeum symbiosum (strain A)

Query: 1 RPSRPPSH 8
R RPP+H
Sbjct: 584 RQMRPPTH 591


>sp|RFCL_METHJ|REPLICATION factor C large subunit|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 PSRPPSHPS 10
P PP PS
Sbjct: 457 PGNPPEQPS 465




120|Sequence|596|605|PSHPSAHGSP

>sp|GVPK1_HALSA|GAS vesicle protein K1|Halobacterium salinarum (strain ATCC 700922

Query: 4 PSAHGSP 10
PS HGSP
Sbjct: 100 PSGHGSP 106


>sp|NUOCD_HALVD|NADH-QUINONE oxidoreductase subunit C/D|Haloferax volcanii (strain ATCC 29605

Query: 1 PSHPSAHG 8
P HP+ HG
Sbjct: 192 PHHPATHG 199


>sp|Y1914_METTH|UPF0425 pyridoxal phosphate-dependent protein MTH_1914|Methanothermobacter

Query: 1 PSHPSAHGS 9
PSHPS GS
Sbjct: 109 PSHPSVPGS 117


>sp|MOAC_METKA|PROBABLE cyclic pyranopterin monophosphate synthase|Methanopyrus kandleri

Query: 2 SHPSAHGSP 10
SHP G P
Sbjct: 44 SHPQGKGDP 52


>sp|Y694_METJA|UNCHARACTERIZED NOP5 family protein MJ0694|Methanocaldococcus jannaschii (strain

Query: 2 SHPSAHGSP 10
+HP GSP
Sbjct: 307 NHPLIQGSP 315


>sp|THII_METTH|PROBABLE tRNA sulfurtransferase|Methanothermobacter thermautotrophicus

Query: 1 PSHPSAHGSP 10
P+HPS P
Sbjct: 350 PAHPSTASPP 359


>sp|Y329_METJA|UNCHARACTERIZED protein MJ0329|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PSHPSAHG 8
PSH HG
Sbjct: 581 PSHRKLHG 588


>sp|Y1073_CALMQ|UPF0173 metal-dependent hydrolase Cmaq_1073|Caldivirga maquilingensis

Query: 3 HPSAHGSP 10
H S HGSP
Sbjct: 112 HSSTHGSP 119


>sp|ATGT_PYRAE|TRNA-GUANINE(15) transglycosylase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 SHPSAHG 8
+HP HG
Sbjct: 356 THPETHG 362


>sp|LEUC_HALMA|3-ISOPROPYLMALATE dehydratase large subunit|Haloarcula marismortui (strain ATCC 43049

Query: 2 SHPSAHGS 9
SH S HG+
Sbjct: 130 SHTSTHGA 137


>sp|Y584_METS5|UPF0282 protein Msed_0584|Metallosphaera sedula (strain ATCC 51363

Query: 2 SHPSAHGS 9
SHP HG+
Sbjct: 145 SHPVPHGA 152




121|Sequence|601|610|AHGSPAPVST

>sp|PSA_PYRFU|PROTEASOME subunit alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 2 HGSPAPVS 9
+G PAPVS
Sbjct: 105 YGEPAPVS 112


>sp|UPP_METTH|URACIL phosphoribosyltransferase|Methanothermobacter thermautotrophicus

Query: 1 AHGSPA 6
AHGSPA
Sbjct: 154 AHGSPA 159


>sp|MRE11_METKA|DNA double-strand break repair protein|Methanopyrus kandleri (strain

Query: 2 HGSPAP 7
HGSPAP
Sbjct: 209 HGSPAP 214


>sp|CDPAS_META3|CDP-ARCHAEOL synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 AHGSPAPV 8
A G PAP+
Sbjct: 118 AQGRPAPI 125


>sp|DNAG_METBF|DNA primase DnaG|Methanosarcina barkeri (strain Fusaro /

Query: 4 SPAPVST 10
SPAPV T
Sbjct: 411 SPAPVKT 417


>sp|SYW_PYRCJ|TRYPTOPHAN--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 HGSPAPV 8
HG P PV
Sbjct: 209 HGRPTPV 215


>sp|ASSY_METHJ|ARGININOSUCCINATE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 HGSPAPV 8
HG P PV
Sbjct: 160 HGIPVPV 166


>sp|Y1422_METBF|MEMO1 family protein Mbar_A1422|Methanosarcina barkeri (strain Fusaro /

Query: 1 AHGSPAPVST 10
+GSP VST
Sbjct: 75 GYGSPVSVST 84


>sp|RNH2_THEPD|RIBONUCLEASE HII|Thermofilum pendens (strain DSM 2475

Query: 2 HGSPAPVS 9
HG P P++
Sbjct: 195 HGEPPPIA 202




122|Sequence|606|615|APVSTMPKRM

>sp|RS25_SACS2|SMALL ribosomal subunit protein eS25|Saccharolobus solfataricus (strain

Query: 2 PVSTMPKRM 10
P+STM KR+
Sbjct: 8 PISTMEKRL 16


>sp|GGR_METS3|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 PVSTMPKRM 10
PV MPK+M
Sbjct: 262 PVGGMPKKM 270


>sp|RS25_SULTO|SMALL ribosomal subunit protein eS25|Sulfurisphaera tokodaii (strain

Query: 2 PVSTMPKRM 10
P+ST+ KRM
Sbjct: 8 PISTVEKRM 16


>sp|GGR1_METTH|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 1|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 PVSTMPKRM 10
PV MPK++
Sbjct: 266 PVGGMPKKL 274




123|Sequence|611|620|MPKRMSSEGP

>sp|MRE11_METJA|DNA double-strand break repair protein|Methanocaldococcus jannaschii

Query: 1 MPKRMSSEGP 10
MP+R+ E P
Sbjct: 87 MPRRLGEESP 96


>sp|ARLMC_PYRAB|23S rRNA (uracil(747)-C(5))-methyltransferase|Pyrococcus abyssi (strain

Query: 1 MPKRMSSEGP 10
KR++ EGP
Sbjct: 350 FSKRIAKEGP 359




124|Sequence|616|625|SSEGPPRMSP

>sp|DP2L_HALMA|DNA polymerase II large subunit|Haloarcula marismortui (strain ATCC

Query: 4 GPPRMSP 10
GPPR+ P
Sbjct: 315 GPPRVEP 321


>sp|PCCB_HALMT|PROPIONYL-COA carboxylase, carboxyltransferase subunit|Haloferax mediterranei

Query: 3 EGPPRMSP 10
E PPR+ P
Sbjct: 253 EDPPRVEP 260




125|Sequence|621|630|PRMSPKAQRH

>sp|PYRH_PYRNV|URIDYLATE kinase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 PRMSPKAQR 9
PR +PKA+R
Sbjct: 143 PRKNPKAER 151


>sp|PYRH_PYRAE|URIDYLATE kinase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PRMSPKAQR 9
PR +P AQR
Sbjct: 143 PRRNPNAQR 151


>sp|MVHA_METTH|F420-NON-REDUCING hydrogenase subunit A|Methanothermobacter thermautotrophicus

Query: 1 PRMSPKAQRH 10
P +PKAQ H
Sbjct: 302 PDAAPKAQEH 311


>sp|NCPP_METAR|PROBABLE inosine/xanthosine triphosphatase|Methanocella arvoryzae (strain

Query: 1 PRMSPKAQRH 10
PR++PK R
Sbjct: 163 PRLNPKLYRQ 172


>sp|IF2B_PYRCJ|TRANSLATION initiation factor 2 subunit|Pyrobaculum calidifontis (strain DSM

Query: 3 MSPKAQR 9
+SPKAQR
Sbjct: 16 VSPKAQR 22




126|Sequence|626|635|KAQRHPRNHR

>sp|LYSY_HALWD|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 3 QRHPRNHR 10
+R P NHR
Sbjct: 294 ERDPENHR 301


>sp|RL6_METTH|LARGE ribosomal subunit protein uL6|Methanothermobacter

Query: 2 AQRHPRNHR 10
+RHPR R
Sbjct: 114 GERHPRTAR 122


>sp|Y2119_ARCFU|UNCHARACTERIZED protein AF_2119|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KAQRHPRNH 9
KA+ +PRN+
Sbjct: 191 KAEGNPRNY 199


>sp|WECB_METMP|UDP-N-ACETYLGLUCOSAMINE 2-epimerase|Methanococcus maripaludis (strain DSM 14266

Query: 5 HPRNHR 10
HPR H+
Sbjct: 240 HPRTHK 245


>sp|SYE_METAR|GLUTAMATE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 KAQRHPRNHR 10
KA HP++H+
Sbjct: 438 KAPLHPQDHK 447


>sp|URED_HALWD|UREASE accessory protein UreD|Haloquadratum walsbyi (strain DSM 16790

Query: 2 AQRHPRN 8
AQR PRN
Sbjct: 210 AQRDPRN 216




127|Sequence|631|640|PRNHRVSAGR

>sp|RL5_NATPD|LARGE ribosomal subunit protein uL5|Natronomonas pharaonis (strain ATCC

Query: 1 PRNHRVSA 8
P NHR++A
Sbjct: 152 PSNHRLTA 159


>sp|DHQS_KORCO|3-DEHYDROQUINATE synthase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 PRNHRVSAG 9
PR RV+AG
Sbjct: 211 PREFRVNAG 219


>sp|NFI_HALSA|ENDONUCLEASE V|Halobacterium salinarum (strain ATCC 700922

Query: 3 NHRVSAG 9
HRVSAG
Sbjct: 228 GHRVSAG 234


>sp|RL5_METBF|LARGE ribosomal subunit protein uL5|Methanosarcina barkeri (strain Fusaro

Query: 1 PRNHRVS 7
P NHRV+
Sbjct: 146 PTNHRVT 152




128|Sequence|636|645|VSAGRGSISS

>sp|Y1314_ARCFU|UNCHARACTERIZED protein AF_1314|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VSAGRGSI 8
VSAGRGS+
Sbjct: 115 VSAGRGSV 122




129|Sequence|641|650|GSISSGLEFV

>sp|METXA_METBU|HOMOSERINE O-acetyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 1 GSISSGLEFV 10
GS++ GL++V
Sbjct: 295 GSLAEGLKYV 304


>sp|IF6_AERPE|TRANSLATION initiation factor 6|Aeropyrum pernix (strain ATCC 700893

Query: 1 GSISSGLEFV 10
G+I+ G+EFV
Sbjct: 190 GTINFGVEFV 199


>sp|CSA2B_SACS2|CRISPR-ASSOCIATED aCascade subunit Cas7/Csa2 2|Saccharolobus solfataricus (strain

Query: 1 GSISSGLEFV 10
GS+SS EF+
Sbjct: 73 GSLSSQYEFI 82




130|Sequence|646|655|GLEFVSHNPP

>sp|YR33_THEPE|UNCHARACTERIZED 33.4 kDa protein in|Thermofilum pendens

Query: 1 GLEFVSHNPP 10
G+EF+ ++PP
Sbjct: 85 GVEFLKYDPP 94


>sp|MANB_METJA|PHOSPHOMANNOMUTASE jannaschii (strain ATCC 43067

Query: 6 SHNPP 10
SHNPP
Sbjct: 97 SHNPP 101


>sp|GLMM_METMP|PHOSPHOGLUCOSAMINE mutase|Methanococcus maripaludis (strain DSM 14266

Query: 6 SHNPP 10
SHNPP
Sbjct: 88 SHNPP 92


>sp|GLMM_METM7|PHOSPHOGLUCOSAMINE mutase|Methanococcus maripaludis (strain C7 /

Query: 6 SHNPP 10
SHNPP
Sbjct: 88 SHNPP 92


>sp|GLMM_METM5|PHOSPHOGLUCOSAMINE mutase|Methanococcus maripaludis (strain C5 /

Query: 6 SHNPP 10
SHNPP
Sbjct: 88 SHNPP 92


>sp|GLMM_METAR|PROBABLE phosphoglucosamine mutase|Methanocella arvoryzae (strain DSM

Query: 6 SHNPP 10
SHNPP
Sbjct: 91 SHNPP 95


>sp|PGMMM_THEKO|PHOSPHOGLUCOMUTASE/PHOSPHOMANNOMUTASE kodakarensis (strain ATCC BAA-918

Query: 6 SHNPP 10
SHNPP
Sbjct: 101 SHNPP 105


>sp|GLMM_METJA|PHOSPHOGLUCOSAMINE mutase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 6 SHNPP 10
SHNPP
Sbjct: 89 SHNPP 93


>sp|RS17_METVA|SMALL ribosomal subunit protein uS17|Methanococcus vannielii

Query: 4 FVSHNPP 10
V+HNPP
Sbjct: 69 LVAHNPP 75


>sp|GLMM_THEKO|PROBABLE phosphoglucosamine mutase|Thermococcus kodakarensis (strain ATCC

Query: 6 SHNPP 10
SHNPP
Sbjct: 96 SHNPP 100


>sp|GLMM_THEGJ|PROBABLE phosphoglucosamine mutase|Thermococcus gammatolerans (strain DSM

Query: 6 SHNPP 10
SHNPP
Sbjct: 96 SHNPP 100


>sp|GLMM_PYRHO|PROBABLE phosphoglucosamine mutase|Pyrococcus horikoshii (strain ATCC 700860

Query: 6 SHNPP 10
SHNPP
Sbjct: 96 SHNPP 100


>sp|GLMM_METVS|PHOSPHOGLUCOSAMINE mutase|Methanococcus vannielii (strain ATCC 35089

Query: 6 SHNPP 10
SHNPP
Sbjct: 88 SHNPP 92


>sp|CETZ_PYRHO|TUBULIN-LIKE protein CetZ|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 LEFVSHNPP 10
LE++ H PP
Sbjct: 36 LEYLKHIPP 44


>sp|CETZ_PYRFU|TUBULIN-LIKE protein CetZ|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LEFVSHNPP 10
LE++ H PP
Sbjct: 36 LEYLKHIPP 44


>sp|GLMM_PYRFU|PROBABLE phosphoglucosamine mutase|Pyrococcus furiosus (strain ATCC 43587

Query: 6 SHNPP 10
SHNPP
Sbjct: 96 SHNPP 100


>sp|GLMM_PYRAB|PROBABLE phosphoglucosamine mutase|Pyrococcus abyssi (strain GE5 /

Query: 6 SHNPP 10
SHNPP
Sbjct: 96 SHNPP 100


>sp|SYM_HALSA|METHIONINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 GLEFVSHNPP 10
G E++ HN P
Sbjct: 457 GNEYIQHNEP 466


>sp|PPM_THEKO|PHOSPHOPENTOMUTASE kodakarensis (strain ATCC BAA-918

Query: 6 SHNPP 10
SHNPP
Sbjct: 93 SHNPP 97


>sp|DADD_METVS|5'-DEOXYADENOSINE deaminase|Methanococcus vannielii (strain ATCC 35089

Query: 4 FVSHNP 9
FV+HNP
Sbjct: 261 FVAHNP 266


>sp|DADD_METM6|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain C6 /

Query: 4 FVSHNP 9
FV+HNP
Sbjct: 261 FVAHNP 266


>sp|GLMM_METKA|PROBABLE phosphoglucosamine mutase|Methanopyrus kandleri (strain AV19 /

Query: 6 SHNPP 10
SHNPP
Sbjct: 96 SHNPP 100


>sp|BE_THEKO|1,4-ALPHA-GLUCAN branching enzyme TK1436|Thermococcus kodakarensis (strain ATCC

Query: 4 FVSHNPP 10
+VS NPP
Sbjct: 531 YVSENPP 537


>sp|RL10E_THEPD|LARGE ribosomal subunit protein uL16|Thermofilum pendens (strain DSM

Query: 2 LEFVSHNPP 10
LE++ NPP
Sbjct: 20 LEYIKSNPP 28


>sp|PYCA_METJA|PYRUVATE carboxylase subunit A|Methanocaldococcus jannaschii (strain ATCC

Query: 1 GLEFVSHNP 9
G EF+ NP
Sbjct: 99 GFEFIGPNP 107


>sp|RFCL_METTH|REPLICATION factor C large subunit|Methanothermobacter thermautotrophicus

Query: 2 LEFVSHNPP 10
LEF++ N P
Sbjct: 257 LEFIAENVP 265


>sp|DP2L_PICTO|DNA polymerase II large subunit|Picrophilus torridus (strain ATCC

Query: 1 GLEFVSHN 8
G+EF HN
Sbjct: 500 GIEFKKHN 507


>sp|LIPA_AERPE|LIPOYL synthase|Aeropyrum pernix (strain ATCC 700893

Query: 1 GLEFVSHN 8
GLE ++HN
Sbjct: 150 GLEVLAHN 157


>sp|CISY_PYRFU|CITRATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 EFVSHN 8
E+VSHN
Sbjct: 348 EYVSHN 353


>sp|RFHPS_METTH|BETA-RIBOFURANOSYLPHENOL 5'-phosphate synthase|Methanothermobacter thermautotrophicus

Query: 1 GLEFVSH 7
G+EF SH
Sbjct: 51 GVEFTSH 57


>sp|MRE11_METMP|DNA double-strand break repair protein|Methanococcus maripaludis

Query: 1 GLEFVSHN 8
G+E+VS N
Sbjct: 127 GIEYVSQN 134


>sp|RNP3_METMA|RIBONUCLEASE P protein component 3|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GLEFVSHNP 9
G+E V NP
Sbjct: 63 GIELVEENP 71


>sp|RNP3_METBF|RIBONUCLEASE P protein component 3|Methanosarcina barkeri (strain Fusaro /

Query: 1 GLEFVSHNP 9
G+E V NP
Sbjct: 63 GIELVEENP 71


>sp|RNP3_METAC|RIBONUCLEASE P protein component 3|Methanosarcina acetivorans (strain ATCC

Query: 1 GLEFVSHNP 9
G+E V NP
Sbjct: 63 GIELVEENP 71




131|Sequence|651|660|SHNPPSEAAT

>sp|PPM_THEKO|PHOSPHOPENTOMUTASE kodakarensis (strain ATCC BAA-918

Query: 1 SHNPPSE 7
SHNPP++
Sbjct: 93 SHNPPTD 99


>sp|GLMM_PYRFU|PROBABLE phosphoglucosamine mutase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 SHNPPS 6
SHNPP+
Sbjct: 96 SHNPPN 101


>sp|PGMMM_THEKO|PHOSPHOGLUCOMUTASE/PHOSPHOMANNOMUTASE kodakarensis (strain ATCC BAA-918

Query: 1 SHNPP 5
SHNPP
Sbjct: 101 SHNPP 105


>sp|MANB_METJA|PHOSPHOMANNOMUTASE jannaschii (strain ATCC 43067

Query: 1 SHNPP 5
SHNPP
Sbjct: 97 SHNPP 101


>sp|GLMM_METMP|PHOSPHOGLUCOSAMINE mutase|Methanococcus maripaludis (strain DSM 14266

Query: 1 SHNPP 5
SHNPP
Sbjct: 88 SHNPP 92


>sp|GLMM_METM7|PHOSPHOGLUCOSAMINE mutase|Methanococcus maripaludis (strain C7 /

Query: 1 SHNPP 5
SHNPP
Sbjct: 88 SHNPP 92


>sp|GLMM_METM5|PHOSPHOGLUCOSAMINE mutase|Methanococcus maripaludis (strain C5 /

Query: 1 SHNPP 5
SHNPP
Sbjct: 88 SHNPP 92


>sp|GLMM_METJA|PHOSPHOGLUCOSAMINE mutase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SHNPP 5
SHNPP
Sbjct: 89 SHNPP 93


>sp|GLMM_PYRHO|PROBABLE phosphoglucosamine mutase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 SHNPP 5
SHNPP
Sbjct: 96 SHNPP 100


>sp|GLMM_METVS|PHOSPHOGLUCOSAMINE mutase|Methanococcus vannielii (strain ATCC 35089

Query: 1 SHNPP 5
SHNPP
Sbjct: 88 SHNPP 92


>sp|GLMM_THEKO|PROBABLE phosphoglucosamine mutase|Thermococcus kodakarensis (strain ATCC

Query: 1 SHNPP 5
SHNPP
Sbjct: 96 SHNPP 100


>sp|GLMM_PYRAB|PROBABLE phosphoglucosamine mutase|Pyrococcus abyssi (strain GE5 /

Query: 1 SHNPP 5
SHNPP
Sbjct: 96 SHNPP 100


>sp|GLMM_THEGJ|PROBABLE phosphoglucosamine mutase|Thermococcus gammatolerans (strain DSM

Query: 1 SHNPP 5
SHNPP
Sbjct: 96 SHNPP 100


>sp|GLMM_METKA|PROBABLE phosphoglucosamine mutase|Methanopyrus kandleri (strain AV19 /

Query: 1 SHNPP 5
SHNPP
Sbjct: 96 SHNPP 100


>sp|GLMM_METAR|PROBABLE phosphoglucosamine mutase|Methanocella arvoryzae (strain DSM

Query: 1 SHNPP 5
SHNPP
Sbjct: 91 SHNPP 95




132|Sequence|656|665|SEAATPPVAR

>sp|SUFS_HALVD|CYSTEINE desulfurase|Haloferax volcanii (strain ATCC 29605

Query: 2 EAATPPVAR 10
EA TPP+A+
Sbjct: 293 EAGTPPIAQ 301




133|Sequence|661|670|PPVARTSPSG

>sp|Y031_METPE|PUTATIVE HTH-type transcriptional regulatory protein|Methanosphaerula

Query: 1 PPVARTSPSG 10
PP+ SP G
Sbjct: 113 PPLVYASPGG 122


>sp|SYT_METPE|THREONINE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 PPVARTSPSG 10
PP+ SP+G
Sbjct: 454 PPILHCSPTG 463


>sp|SYT_METB6|THREONINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 PPVARTSPSG 10
PP+ SP+G
Sbjct: 459 PPILHCSPTG 468


>sp|SYT_METHJ|THREONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 PPVARTSPSG 10
PP+ SP+G
Sbjct: 455 PPILHCSPTG 464


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 PPVARTSPSG 10
PP+ SP+G
Sbjct: 456 PPILHCSPTG 465


>sp|GLYA_METS5|SERINE hydroxymethyltransferase|Metallosphaera sedula (strain ATCC 51363

Query: 1 PPVARTSPSG 10
PP A PSG
Sbjct: 350 PPEAVNDPSG 359


>sp|RL10_NATPD|LARGE ribosomal subunit protein uL10|Natronomonas pharaonis (strain ATCC

Query: 2 PVARTSPS 9
P ART+PS
Sbjct: 235 PTARTAPS 242




134|Sequence|666|675|TSPSGGTWSS

>sp|MDH_PYRHO|MALATE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 SGGTWS 9
SGGTWS
Sbjct: 260 SGGTWS 265


>sp|MDH_PYRAB|MALATE dehydrogenase|Pyrococcus abyssi (strain GE5 /

Query: 4 SGGTWS 9
SGGTWS
Sbjct: 260 SGGTWS 265


>sp|Y1181_METJA|UNCHARACTERIZED protein MJ1181|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 SPSGGTWSS 10
S +GGTW++
Sbjct: 74 SATGGTWAN 82


>sp|DSRB_ARCFU|SULFITE reductase, dissimilatory-type subunit beta|Archaeoglobus fulgidus

Query: 3 PSGGTWSS 10
P GGTW +
Sbjct: 114 PCGGTWDA 121


>sp|GLYA_PYRHO|SERINE hydroxymethyltransferase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 PSGGTWSS 10
P+GG W++
Sbjct: 328 PAGGGWAA 335


>sp|GLYA_PYRFU|SERINE hydroxymethyltransferase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 PSGGTWSS 10
P+GG W++
Sbjct: 328 PAGGGWAA 335


>sp|GLYA_PYRAB|SERINE hydroxymethyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 3 PSGGTWSS 10
P+GG W++
Sbjct: 328 PAGGGWAA 335


>sp|KUP_METAC|PROBABLE potassium transport system protein|Methanosarcina acetivorans

Query: 3 PSGGTWS 9
P GG WS
Sbjct: 416 PHGGYWS 422


>sp|KUP_METBF|PROBABLE potassium transport system protein|Methanosarcina barkeri (strain

Query: 3 PSGGTWS 9
P GG WS
Sbjct: 416 PHGGYWS 422


>sp|Y544_THEVO|UNCHARACTERIZED solute-binding protein TV0544|Thermoplasma volcanium (strain ATCC

Query: 2 SPSGGTWSS 10
+PSGG W S
Sbjct: 6 TPSGGKWLS 14


>sp|SYFA_METMJ|PHENYLALANINE--TRNA ligase alpha subunit|Methanoculleus marisnigri (strain ATCC 35101

Query: 5 GGTWSS 10
GGTWS+
Sbjct: 304 GGTWSA 309


>sp|PYRI_THEKO|ASPARTATE carbamoyltransferase regulatory chain|Thermococcus kodakarensis

Query: 1 TSPSGGT 7
T P+GGT
Sbjct: 34 TKPNGGT 40


>sp|PYRI_THEGJ|ASPARTATE carbamoyltransferase regulatory chain|Thermococcus gammatolerans

Query: 1 TSPSGGT 7
T P+GGT
Sbjct: 33 TKPNGGT 39


>sp|Y706_METBF|UPF0288 protein Mbar_A0706|Methanosarcina barkeri (strain Fusaro /

Query: 2 SPSGGTWS 9
SPSG W+
Sbjct: 77 SPSGKLWA 84




135|Sequence|671|680|GTWSSVVSGV

>sp|NTPPA_STAMF|DTTP/UTP pyrophosphatase|Staphylothermus marinus (strain ATCC 43588

Query: 1 GTWSSVVSGV 10
G W SV +GV
Sbjct: 97 GKWHSVYTGV 106


>sp|CBID_SULAC|COBALT-PRECORRIN-5B C(1)-methyltransferase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 TWSSVVSGV 10
T+SSVV+G+
Sbjct: 280 TFSSVVAGI 288


>sp|PDAD_METAR|PYRUVOYL-DEPENDENT arginine decarboxylase|Methanocella arvoryzae (strain DSM 22066

Query: 1 GTWSSVVSG 9
G W++V+S
Sbjct: 153 GNWTTVISA 161




136|Sequence|676|685|VVSGVPRLSP

>sp|SYS_METS5|SERINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 1 VVSGVPRLSP 10
V S +PRLSP
Sbjct: 57 VSSQIPRLSP 66


>sp|THI4_PYRFU|THIAMINE thiazole synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 VSGVPRLSP 10
VSG PR+ P
Sbjct: 222 VSGAPRMGP 230


>sp|CFBD_METJA|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanocaldococcus

Query: 1 VVSGVPRLSP 10
VVSGVP P
Sbjct: 283 VVSGVPHALP 292


>sp|SYM_METMJ|METHIONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 SGVPRLSP 10
SGVP L+P
Sbjct: 401 SGVPDLAP 408


>sp|RL34_HYPBU|LARGE ribosomal subunit protein eL34|Hyperthermus butylicus (strain DSM

Query: 2 VSGVPRLSP 10
++GVPRL P
Sbjct: 44 LNGVPRLRP 52


>sp|THI4_METBU|THIAMINE thiazole synthase|Methanococcoides burtonii (strain DSM 6242

Query: 2 VSGVPRLSP 10
V+G PR+ P
Sbjct: 229 VAGAPRMGP 237


>sp|DP2L_METKA|DNA polymerase II large subunit|Methanopyrus kandleri (strain AV19 /

Query: 2 VSGVPRLSP 10
V+G+PR +P
Sbjct: 198 VAGLPRFNP 206


>sp|CFBD_METBF|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanosarcina barkeri

Query: 1 VVSGVPRLSP 10
V+SGVP P
Sbjct: 299 VISGVPHAIP 308


>sp|HPRL1_HALTV|HGPRTASE-LIKE protein 1|Haloterrigena turkmenica (strain ATCC 51198

Query: 1 VVSGVPRLSP 10
+ GVP+L P
Sbjct: 26 ISDGVPKLDP 35


>sp|RL18_CALMQ|LARGE ribosomal subunit protein uL18|Caldivirga maquilingensis (strain

Query: 1 VVSGVPRL 8
V+SG PRL
Sbjct: 28 VISGKPRL 35


>sp|CFBD_METTH|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanothermobacter

Query: 1 VVSGVPRLSP 10
VVSGVP P
Sbjct: 288 VVSGVPHALP 297


>sp|SELD_METKA|SELENIDE, water dikinase|Methanopyrus kandleri (strain AV19 /

Query: 1 VVSGVPRLSP 10
VVSG PR P
Sbjct: 101 VVSGFPRELP 110


>sp|RL18_THEPD|LARGE ribosomal subunit protein uL18|Thermofilum pendens (strain DSM

Query: 1 VVSGVPRL 8
++SG PRL
Sbjct: 28 IISGKPRL 35


>sp|NNR_METTH|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Methanothermobacter

Query: 4 GVPRLS 9
GVPRLS
Sbjct: 36 GVPRLS 41




137|Sequence|681|690|PRLSPKTHRP

>sp|NCPP_METAR|PROBABLE inosine/xanthosine triphosphatase|Methanocella arvoryzae (strain

Query: 1 PRLSPKTHR 9
PRL+PK +R
Sbjct: 163 PRLNPKLYR 171


>sp|AMTAB_PYRAB|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 1 PRLSPKT 7
PRLSP+T
Sbjct: 131 PRLSPRT 137


>sp|DCDA_METJA|DIAMINOPIMELATE decarboxylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PRLSPKTH 8
P ++PKTH
Sbjct: 165 PNVNPKTH 172


>sp|DCDA_ARCFU|DIAMINOPIMELATE decarboxylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PRLSPKTH 8
P + PKTH
Sbjct: 147 PDVDPKTH 154


>sp|KORA_METJA|2-OXOGLUTARATE synthase subunit KorA|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PRLSPKTH 8
P +SP+TH
Sbjct: 233 PDVSPETH 240


>sp|FOLCP_HALVD|PROBABLE bifunctional folylpolyglutamate synthase/dihydropteroate

Query: 5 PKTHR 9
PKTHR
Sbjct: 430 PKTHR 434


>sp|HDLA_ARCPA|HETERODISULFIDE reductase subunit A-like protein|Archaeoglobus profundus (strain

Query: 4 SPKTHRP 10
+P+TH P
Sbjct: 74 TPRTHEP 80


>sp|DAPA_METVS|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 PRLSPKTH 8
P L+PK H
Sbjct: 47 PTLTPKEH 54


>sp|QUEE_METAC|7-CARBOXY-7-DEAZAGUANINE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 RLSPKTHR 9
R+ P+THR
Sbjct: 243 RIIPQTHR 250




138|Sequence|686|695|KTHRPRSPRQ

>sp|CS2H_ACIS1|CARBON disulfide hydrolase|Acidianus sp. (strain A1-3)

Query: 1 KTHRPRSPRQ 10
+THR R P Q
Sbjct: 178 ETHRLRKPNQ 187


>sp|ARSM_HALSA|ARSENITE methyltransferase|Halobacterium salinarum (strain ATCC 700922

Query: 2 THRPRSPR 9
T+RPR P+
Sbjct: 91 TNRPRRPK 98




139|Sequence|691|700|RSPRQNSIGN

>sp|RL3_AERPE|LARGE ribosomal subunit protein uL3|Aeropyrum pernix (strain ATCC

Query: 1 RSPRQNSIG 9
R+PR+ S+G
Sbjct: 7 RAPRRGSLG 15




140|Sequence|696|705|NSIGNTPSGP

>sp|RAD50_METKA|DNA double-strand break repair Rad50|Methanopyrus kandleri (strain AV19

Query: 3 IGNTPSG 9
IG TPSG
Sbjct: 570 IGRTPSG 576


>sp|SYK_CENSY|LYSINE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 3 IGNTPSGP 10
I +TPSGP
Sbjct: 496 ILDTPSGP 503


>sp|COFD_HALMA|2-PHOSPHO-L-LACTATE transferase|Haloarcula marismortui (strain ATCC 43049

Query: 2 SIGNTPSGP 10
SI +TPSGP
Sbjct: 168 SIIHTPSGP 176


>sp|MTAD_HALSA|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase|Halobacterium salinarum (strain ATCC 700922

Query: 2 SIGNTPSG 9
++G+TP+G
Sbjct: 35 AVGDTPAG 42


>sp|CBID_METKA|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 3 IGNTPSG 9
+G TPSG
Sbjct: 139 VGETPSG 145


>sp|IORA_PYRAB|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus abyssi (strain GE5 /

Query: 4 GNTPSGP 10
G TP GP
Sbjct: 512 GETPHGP 518




141|Sequence|701|710|TPSGPVLASP

>sp|TREH2_SULAC|TREHALASE 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 PSGPVLASP 10
PSG ++ASP
Sbjct: 224 PSGGIIASP 232


>sp|MCM_SACI5|MINICHROMOSOME maintenance protein MCM|Saccharolobus islandicus (strain REY15A)

Query: 1 TPSGPVLASP 10
TP P+L +P
Sbjct: 550 TPDSPILITP 559


>sp|MCM_SACS2|MINICHROMOSOME maintenance protein MCM|Saccharolobus solfataricus (strain ATCC

Query: 1 TPSGPVLASP 10
TP P+L +P
Sbjct: 550 TPDSPILITP 559


>sp|AROD_METST|3-DEHYDROQUINATE dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 GPVLASP 10
GP+L SP
Sbjct: 199 GPILGSP 205


>sp|PURE_ARCFU|PHOSPHORIBOSYLAMINOIMIDAZOLE carboxylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 SGPVLASP 10
S PV+ASP
Sbjct: 103 SKPVIASP 110


>sp|CBPX2_SACS2|THERMOSTABLE carboxypeptidase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 TPSGPVLASP 10
T GP++A+P
Sbjct: 180 TRKGPIMATP 189


>sp|CBPX1_SACS2|THERMOSTABLE carboxypeptidase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 TPSGPVLASP 10
T GP++A+P
Sbjct: 180 TRKGPIMATP 189


>sp|GSA_IGNH4|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 TPSGPVL 7
TPSGPV
Sbjct: 285 TPSGPVF 291


>sp|PYRE_METKA|OROTATE phosphoribosyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 2 PSGPVLASP 10
P G VLA P
Sbjct: 59 PDGDVLAGP 67


>sp|Y1156_METJA|CELL division cycle protein 48|Methanocaldococcus jannaschii (strain

Query: 1 TPSGPV 6
TP+GPV
Sbjct: 145 TPAGPV 150


>sp|Y803_PYRIL|UPF0173 metal-dependent hydrolase Pisl_0803|Pyrobaculum islandicum (strain

Query: 2 PSGPVLASP 10
PSG V+A+P
Sbjct: 121 PSGFVIATP 129


>sp|Y1348_PYRNV|UPF0173 metal-dependent hydrolase Tneu_1348|Pyrobaculum neutrophilum

Query: 2 PSGPVLASP 10
PSG V+A+P
Sbjct: 121 PSGFVIATP 129




142|Sequence|706|715|VLASPQAGII

***** No hits found ******


143|Sequence|711|720|QAGIIPTEAV

>sp|SPSS_METM7|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain C7 /

Query: 1 QAGIIPTEA 9
+ GIIPTEA
Sbjct: 27 RGGIIPTEA 35


>sp|SPSS_METVS|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 QAGIIPTEA 9
+ GI+PTEA
Sbjct: 27 RGGILPTEA 35


>sp|SPSS_METM6|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain C6 /

Query: 1 QAGIIPTEA 9
+ GIIPTE+
Sbjct: 27 RGGIIPTES 35


>sp|SPSS_METMP|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 QAGIIPTEA 9
+ GI+PTE+
Sbjct: 27 RGGILPTES 35


>sp|SPSS_METM5|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain C5 /

Query: 1 QAGIIPTEA 9
+ GI+PTE+
Sbjct: 27 RGGILPTES 35


>sp|SYA_NITMS|ALANINE--TRNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 QAGIIPTEAV 10
Q G++P ++V
Sbjct: 669 QGGVVPVKSV 678


>sp|SYL_AERPE|LEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 AGIIPTEAV 10
AGI P EAV
Sbjct: 198 AGISPQEAV 206


>sp|PDXT_METTP|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Methanothrix thermoacetophila

Query: 1 QAGIIPT 7
+AGIIPT
Sbjct: 32 RAGIIPT 38


>sp|AOX2_AERPE|HEME-COPPER oxidase subunit 2|Aeropyrum pernix (strain ATCC 700893

Query: 4 IIPTEAV 10
+IPTEA+
Sbjct: 3 VIPTEAI 9


>sp|PUR8_METTH|ADENYLOSUCCINATE lyase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 QAGIIPTEA 9
+ GIIP EA
Sbjct: 41 ELGIIPAEA 49


>sp|VHCG_METVO|F420-NON-REDUCING hydrogenase vhc subunit G|Methanococcus voltae

Query: 3 GIIPTEAV 10
GIIP+E V
Sbjct: 119 GIIPSEEV 126


>sp|ILVC_SACI1|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain

Query: 1 QAGIIPT 7
+AG+IPT
Sbjct: 179 RAGVIPT 185


>sp|ILVC_SACI7|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain

Query: 1 QAGIIPT 7
+AG+IPT
Sbjct: 179 RAGVIPT 185


>sp|ILVC_SACI6|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain M.16.4

Query: 1 QAGIIPT 7
+AG+IPT
Sbjct: 179 RAGVIPT 185


>sp|ILVC_SACI4|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain M.14.25

Query: 1 QAGIIPT 7
+AG+IPT
Sbjct: 179 RAGVIPT 185


>sp|ILVC_SACI3|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain

Query: 1 QAGIIPT 7
+AG+IPT
Sbjct: 179 RAGVIPT 185


>sp|ILVC_SACI2|KETOL-ACID reductoisomerase (NADP(+))|Saccharolobus islandicus (strain

Query: 1 QAGIIPT 7
+AG+IPT
Sbjct: 179 RAGVIPT 185


>sp|SYA_PYRIL|ALANINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 QAGIIPTEAV 10
Q G++PT +
Sbjct: 676 QGGVVPTREI 685


>sp|VHUB_METJA|POLYFERREDOXIN protein VhuB|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 AGIIPTEAV 10
A + PTEA+
Sbjct: 286 ASVCPTEAI 294


>sp|GATD_METTH|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanothermobacter thermautotrophicus

Query: 1 QAGIIPTE 8
QAG+IP +
Sbjct: 381 QAGVIPCD 388




144|Sequence|716|725|PTEAVAMPIP

>sp|SYP_METS5|PROLINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 1 PTEAVAMPIP 10
P E V +PIP
Sbjct: 288 PIEGVIIPIP 297


>sp|Y374_METJA|UNCHARACTERIZED protein MJ0374|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 TEAVAMPIP 10
TEA PIP
Sbjct: 31 TEAFIQPIP 39


>sp|KAE1B_NATPD|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 3 EAVAMPIP 10
EAVA P+P
Sbjct: 333 EAVARPVP 340


>sp|TRUB_PYRCJ|PROBABLE tRNA pseudouridine synthase B|Pyrobaculum calidifontis (strain DSM

Query: 1 PTEAVAMPIP 10
P E +A P+P
Sbjct: 230 PIEEIARPLP 239


>sp|ARLY_HALMA|ARGININOSUCCINATE lyase|Haloarcula marismortui (strain ATCC 43049

Query: 1 PTEAVAM 7
PTE+VAM
Sbjct: 441 PTESVAM 447




145|Sequence|721|730|AMPIPAASPT

>sp|NARG_HALMT|RESPIRATORY nitrate reductase subunit alpha|Haloferax mediterranei (strain ATCC

Query: 3 PIPAASP 9
PIPA SP
Sbjct: 217 PIPAMSP 223


>sp|DNAJ_METTE|CHAPERONE protein DnaJ|Methanosarcina thermophila

Query: 2 MPIPAASPT 10
M IPA +PT
Sbjct: 294 MNIPAGTPT 302


>sp|IF2P_THEVO|PROBABLE translation initiation factor IF-2|Thermoplasma volcanium (strain

Query: 1 AMPIPA 6
AMP+PA
Sbjct: 459 AMPVPA 464


>sp|Y1033_SACS2|KELCH domain-containing protein SSO1033|Saccharolobus solfataricus

Query: 2 MPIPAASP 9
MP+PA SP
Sbjct: 131 MPLPAYSP 138




146|Sequence|726|735|AASPTPASPA

>sp|SYA_HALSA|ALANINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 AASPTPASP 9
ASP PA+P
Sbjct: 112 GASPPPANP 120


>sp|SYA_HALS3|ALANINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 1 AASPTPASP 9
ASP PA+P
Sbjct: 112 GASPPPANP 120


>sp|SYS2_METBF|TYPE-2 serine--tRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 AASPTPASPA 10
+A PTPA A
Sbjct: 14 SADPTPAKDA 23




147|Sequence|731|740|PASPASNRAV

>sp|LONB_THEAC|ARCHAEAL Lon protease|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PASPASNRA 9
PA+PA+ RA
Sbjct: 644 PATPATTRA 652




148|Sequence|736|745|SNRAVTPSSE

>sp|TRI_THEVO|TRICORN protease|Thermoplasma volcanium (strain ATCC 51530

Query: 1 SNRAVTPSSE 10
SNR++ PS++
Sbjct: 476 SNRSLDPSTD 485


>sp|FOLD_METMA|BIFUNCTIONAL protein FolD|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SNRAVTP 7
SNR +TP
Sbjct: 33 SNRGITP 39


>sp|SYDND_METMJ|ASPARTATE--TRNA(ASP/ASN) ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 RAVTPSSE 10
RAVTP +E
Sbjct: 6 RAVTPETE 13




149|Sequence|741|750|TPSSEAKDSR

>sp|AATD_METB6|A-TYPE ATP synthase subunit D|Methanoregula boonei (strain DSM 21154

Query: 4 SEAKDSR 10
SEAKDSR
Sbjct: 46 SEAKDSR 52




150|Sequence|746|755|AKDSRLQDQR

>sp|RAD50_AERPE|DNA double-strand break repair Rad50|Aeropyrum pernix (strain ATCC

Query: 4 SRLQDQR 10
SRLQD+R
Sbjct: 509 SRLQDKR 515




151|Sequence|751|760|LQDQRQNSPA

>sp|ARDF_PYRFU|ARCHAEAL ribosome dimerization factor|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LQDQRQNS 8
L DQR NS
Sbjct: 164 LSDQRSNS 171




152|Sequence|756|765|QNSPAGNKEN

>sp|HIS81_ARCFU|HISTIDINOL-PHOSPHATE aminotransferase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 NSPAGNKEN 10
N+P GN E+
Sbjct: 130 NNPTGNAED 138


>sp|Y2172_ARCFU|UNCHARACTERIZED protein AF_2172|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 NSPAGN 7
NSPAGN
Sbjct: 174 NSPAGN 179




153|Sequence|761|770|GNKENIKPNE

>sp|SRP54_STAMF|SIGNAL recognition particle 54 kDa|Staphylothermus marinus (strain ATCC

Query: 4 ENIKPNE 10
ENIKP+E
Sbjct: 206 ENIKPDE 212


>sp|Y1156_METJA|CELL division cycle protein 48|Methanocaldococcus jannaschii (strain

Query: 2 NKENIKPNE 10
NKE +KP+E
Sbjct: 761 NKEELKPSE 769


>sp|AATC_METJA|A-TYPE ATP synthase subunit C|Methanocaldococcus jannaschii (strain ATCC

Query: 1 GNKENIKPNE 10
G EN+KP E
Sbjct: 382 GKIENLKPEE 391


>sp|WECC_PYRHO|UDP-N-ACETYL-D-MANNOSAMINE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 KENIKPNE 10
K NIKP+E
Sbjct: 301 KANIKPSE 308


>sp|Y1112_PYRHO|UPF0127 protein PH1112|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GNKENIKP 8
G KE+IKP
Sbjct: 98 GLKESIKP 105


>sp|Y4618_METAC|UPF0313 protein MA_4618|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GNKENIKPN 9
GNK ++PN
Sbjct: 227 GNKTGLRPN 235


>sp|UVRC_METST|UVRABC system protein C|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 KENIKPNE 10
K+NI+PN+
Sbjct: 233 KQNIQPNQ 240


>sp|AMPPA_THEKO|AMP phosphorylase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 GNKENIKPNE 10
G NIKP E
Sbjct: 398 GGDPNIKPEE 407


>sp|CBPX2_SACS2|THERMOSTABLE carboxypeptidase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 GNKENIKPNE 10
G K+NI P++
Sbjct: 247 GTKDNIIPDD 256


>sp|CBPX1_SACS2|THERMOSTABLE carboxypeptidase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 GNKENIKPNE 10
G K+NI P++
Sbjct: 247 GTKDNIIPDD 256


>sp|NNRE_NITMS|NAD(P)H-HYDRATE epimerase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 GNKENIKPNE 10
GN ENIK E
Sbjct: 82 GNPENIKTEE 91




154|Sequence|766|775|IKPNETSPSF

>sp|Y1533_ARCFU|UNCHARACTERIZED transporter AF_1533|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 IKPNETSPSF 10
++P+ TSP F
Sbjct: 232 VQPSSTSPVF 241


>sp|RL10_ARCFU|LARGE ribosomal subunit protein uL10|Archaeoglobus fulgidus (strain ATCC

Query: 1 IKPNETSP 8
+KPN+ SP
Sbjct: 110 LKPNQVSP 117


>sp|AGL5_HALVD|LOW-SALT glycan biosynthesis hexosyltransferase Agl5|Haloferax volcanii

Query: 1 IKPNETS 7
+KPNETS
Sbjct: 34 LKPNETS 40


>sp|HMU_HALWD|HALOMUCIN walsbyi (strain DSM 16790

Query: 2 KPNETSPS 9
KPN T+P+
Sbjct: 8188 KPNATNPT 8195


>sp|AROA_THEKO|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Thermococcus kodakarensis (strain ATCC

Query: 1 IKPNETSPSF 10
+ P E SP F
Sbjct: 67 VPPEEPSPGF 76


>sp|Y360_CALMQ|PROTEIN Cmaq_0360|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 IKPNETSPS 9
IKP E +PS
Sbjct: 31 IKPPEDTPS 39




155|Sequence|771|780|TSPSFSKAEN

>sp|RS4_IGNH4|SMALL ribosomal subunit protein uS4|Ignicoccus hospitalis (strain KIN4/I

Query: 1 TSPSFSKAE 9
TSP F KA+
Sbjct: 157 TSPYFKKAQ 165


>sp|SPEE_SACI7|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 TSPSFS 6
TSPSFS
Sbjct: 196 TSPSFS 201


>sp|SPEE_SACI6|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 TSPSFS 6
TSPSFS
Sbjct: 196 TSPSFS 201


>sp|SPEE_SACI4|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 TSPSFS 6
TSPSFS
Sbjct: 196 TSPSFS 201


>sp|SPEE_SACI3|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain M.16.27)

Query: 1 TSPSFS 6
TSPSFS
Sbjct: 196 TSPSFS 201


>sp|SPEE_SACI2|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 TSPSFS 6
TSPSFS
Sbjct: 196 TSPSFS 201


>sp|SPEE_SACI1|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 TSPSFS 6
TSPSFS
Sbjct: 196 TSPSFS 201


>sp|URIC_HALJB|URICASE jeotgali (strain DSM 18796

Query: 3 PSFSKAEN 10
PSFS+A+N
Sbjct: 52 PSFSEADN 59


>sp|SPEE_SACS2|POLYAMINE aminopropyltransferase|Saccharolobus solfataricus (strain ATCC

Query: 1 TSPSFS 6
TSPSFS
Sbjct: 196 TSPSFS 201


>sp|SPEE_SULAC|POLYAMINE aminopropyltransferase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 TSPSFS 6
TSPSFS
Sbjct: 195 TSPSFS 200


>sp|SPEE_SULTO|POLYAMINE aminopropyltransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 TSPSFS 6
TSPSFS
Sbjct: 193 TSPSFS 198




156|Sequence|776|785|SKAENKGISP

>sp|SYM_METVS|METHIONINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 KAENKGISP 10
KAE +G++P
Sbjct: 58 KAEKEGVTP 66


>sp|Y1318_METJA|UNCHARACTERIZED protein MJ1318|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 AENKGISP 10
AEN GI+P
Sbjct: 498 AENLGITP 505


>sp|THSA_THEAC|THERMOSOME subunit alpha|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 AENKGISP 10
AEN GI P
Sbjct: 449 AENAGIDP 456


>sp|RL3_STAMF|LARGE ribosomal subunit protein uL3|Staphylothermus marinus (strain

Query: 2 KAENKGISP 10
+A NKGI+P
Sbjct: 48 EAVNKGIAP 56


>sp|COOS1_METMA|CARBON monoxide dehydrogenase 1|Methanosarcina mazei (strain ATCC

Query: 2 KAENKGI 8
KAEN+GI
Sbjct: 24 KAENEGI 30


>sp|APBC_SACS2|IRON-SULFUR cluster carrier protein|Saccharolobus solfataricus (strain ATCC

Query: 3 AENKGISP 10
A++KGI+P
Sbjct: 101 ADDKGINP 108




157|Sequence|781|790|KGISPVVSEH

>sp|COFG_HALSA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Halobacterium salinarum (strain ATCC 700922

Query: 2 GISPVVSEH 10
G+SPV +H
Sbjct: 292 GVSPVTKDH 300


>sp|COFG_HALS3|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Halobacterium salinarum (strain ATCC 29341

Query: 2 GISPVVSEH 10
G+SPV +H
Sbjct: 292 GVSPVTKDH 300


>sp|COFG_HALMA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Haloarcula marismortui (strain ATCC 43049

Query: 2 GISPVVSEH 10
G+SPV +H
Sbjct: 289 GVSPVTVDH 297


>sp|TRF3_THEVO|TRICORN protease-interacting factor F3|Thermoplasma volcanium (strain ATCC

Query: 1 KGISPVVSEH 10
KGIS + EH
Sbjct: 373 KGISKYLKEH 382


>sp|TRF2_THEVO|TRICORN protease-interacting factor F2|Thermoplasma volcanium (strain ATCC

Query: 1 KGISPVVSEH 10
KGIS + EH
Sbjct: 378 KGISKYLKEH 387


>sp|MTAD_HALMA|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase|Haloarcula marismortui (strain ATCC 43049

Query: 3 ISPVVSEH 10
++P+V EH
Sbjct: 219 VTPIVDEH 226


>sp|LYSZ_CENSY|PUTATIVE [LysW]-aminoadipate/[LysW]-glutamate kinase|Cenarchaeum symbiosum

Query: 1 KGISPVVS 8
KGI PVVS
Sbjct: 149 KGIVPVVS 156


>sp|MRAY_METTH|PUTATIVE phospho-N-acetylmuramoyl-pentapeptide-

Query: 2 GISPVVSEH 10
G P+V+EH
Sbjct: 32 GDKPIVTEH 40


>sp|METAA_METII|HOMOSERINE O-acetyltransferase|Methanomassiliicoccus intestinalis (strain

Query: 1 KGISPVVSEH 10
KG+ PV+ E+
Sbjct: 251 KGLHPVIPEN 260


>sp|RL21_METTP|LARGE ribosomal subunit protein eL21|Methanothrix thermoacetophila

Query: 1 KGISPVV 7
+GISPVV
Sbjct: 22 RGISPVV 28


>sp|HYD2D_PYRFU|SULFHYDROGENASE 2 subunit delta|Pyrococcus furiosus (strain ATCC 43587

Query: 1 KGISPVVSEH 10
KGI PV ++
Sbjct: 148 KGIEPVAKDY 157


>sp|Y1096_ARCFU|UNCHARACTERIZED protein AF_1096|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KGISPVV 7
KG+SPV+
Sbjct: 9 KGVSPVI 15


>sp|Y1213_METKA|UPF0237 protein MK1213|Methanopyrus kandleri (strain AV19 /

Query: 2 GISPVVSEH 10
GIS V++EH
Sbjct: 19 GISSVLAEH 27


>sp|TRM56_METST|TRNA (cytidine(56)-2'-O)-methyltransferase|Methanosphaera stadtmanae

Query: 1 KGISPVVSEH 10
K PV+ EH
Sbjct: 64 KAYRPVIKEH 73


>sp|MTAD_HALSA|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase|Halobacterium salinarum (strain ATCC 700922

Query: 3 ISPVVSEH 10
+ P+V EH
Sbjct: 218 VEPIVDEH 225


>sp|SUCC_METJA|SUCCINATE--COA ligase [ADP-forming] subunit beta|Methanocaldococcus jannaschii

Query: 1 KGISPVVSEH 10
KGI V+ EH
Sbjct: 312 KGIVEVLKEH 321




158|Sequence|786|795|VVSEHRKQID

>sp|TRM1_METST|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosphaera stadtmanae

Query: 1 VVSEHRKQID 10
V++++RK++D
Sbjct: 43 VINQYRKEVD 52


>sp|AMPPA_METTP|AMP phosphorylase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 VSEHRKQI 9
+ EH+KQI
Sbjct: 408 IGEHQKQI 415




159|Sequence|791|800|RKQIDDLKKF

>sp|EPPA_METMP|PREPILIN peptidase EppA|Methanococcus maripaludis (strain DSM 14266

Query: 1 RKQIDDLKK 9
+KQI DLK+
Sbjct: 235 KKQISDLKE 243


>sp|RF1_PYRFU|PEPTIDE chain release factor subunit|Pyrococcus furiosus (strain ATCC

Query: 1 RKQIDDLKK 9
+K+ID+LKK
Sbjct: 15 KKKIDELKK 23


>sp|TRUD1_METMP|PROBABLE tRNA pseudouridine synthase D|Methanococcus maripaludis (strain DSM

Query: 1 RKQIDDLKKF 10
+KQ+ DLK+F
Sbjct: 179 KKQLKDLKRF 188


>sp|PELO_PYRNV|PROTEIN pelota homolog|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 RKQIDDLKK 9
RKQ+D+L +
Sbjct: 177 RKQVDELSR 185


>sp|ACDB1_METJA|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanocaldococcus

Query: 1 RKQIDDLKK 9
+K IDD+KK
Sbjct: 151 KKLIDDIKK 159


>sp|Y3533_METJA|UNCHARACTERIZED protein MJECL33|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RKQIDDLKKF 10
K+I+DLK F
Sbjct: 312 EKEIEDLKNF 321


>sp|SYA_PYRHO|ALANINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 RKQIDDLKK 9
RK++D LKK
Sbjct: 794 RKEVDKLKK 802


>sp|PURA_METS3|ADENYLOSUCCINATE synthetase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 KQIDDLKKF 10
K+ +DLKK+
Sbjct: 83 KEFEDLKKY 91


>sp|TFE_METAR|TRANSCRIPTION factor E|Methanocella arvoryzae (strain DSM 22066

Query: 1 RKQIDDLKK 9
R +IDDLKK
Sbjct: 159 RNRIDDLKK 167


>sp|RQCH_METJA|ARCHAEAL Rqc2 homolog aRqcH|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RKQIDDLKKF 10
R+Q++ LKK+
Sbjct: 313 RRQLETLKKY 322


>sp|ADEC_METAC|ADENINE deaminase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 IDDLKKF 10
+DDLK F
Sbjct: 304 VDDLKSF 310




160|Sequence|796|805|DLKKFKNDFR

>sp|SURE_METBU|5'-NUCLEOTIDASE SurE|Methanococcoides burtonii (strain DSM 6242

Query: 1 DLKKFKNDF 9
DL+ F++DF
Sbjct: 141 DLRDFQHDF 149


>sp|KDPB_THEVO|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Thermoplasma volcanium (strain ATCC

Query: 2 LKKFKND 8
LKKFK D
Sbjct: 95 LKKFKTD 101


>sp|PAN_METPE|PROTEASOME-ACTIVATING nucleotidase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 LKKFKNDF 9
++KF NDF
Sbjct: 391 IEKFSNDF 398


>sp|DNLI2_THEPD|DNA ligase 2|Thermofilum pendens (strain DSM 2475

Query: 4 KFKNDFR 10
KFK D+R
Sbjct: 438 KFKRDYR 444


>sp|GAPN_SACS2|NAD(P)-DEPENDENT glyceraldehyde-3-phosphate dehydrogenase|Saccharolobus solfataricus

Query: 2 LKKFKNDF 9
L KFK DF
Sbjct: 97 LDKFKEDF 104


>sp|RAD50_PYRFU|DNA double-strand break repair Rad50|Pyrococcus furiosus (strain ATCC

Query: 2 LKKFKNDF 9
LK+FKN++
Sbjct: 304 LKEFKNEY 311


>sp|IF2P_SACS2|PROBABLE translation initiation factor IF-2|Saccharolobus solfataricus

Query: 1 DLKKFKNDFR 10
D+KK ND R
Sbjct: 445 DIKKHINDVR 454


>sp|FTTA_METMP|TRANSCRIPTION termination factor FttA|Methanococcus maripaludis (strain DSM

Query: 2 LKKFKNDFR 10
+K+F DFR
Sbjct: 49 IKEFARDFR 57




161|Sequence|801|810|KNDFRLQPSS

>sp|REG8_PYRHO|UNCHARACTERIZED HTH-type transcriptional regulator PH1692|Pyrococcus horikoshii

Query: 1 KNDFRLQP 8
K DFRL+P
Sbjct: 141 KEDFRLEP 148


>sp|REG8_PYRFU|UNCHARACTERIZED HTH-type transcriptional regulator PF1734|Pyrococcus furiosus

Query: 1 KNDFRLQP 8
K DFRL+P
Sbjct: 141 KEDFRLEP 148


>sp|REG8_PYRAB|UNCHARACTERIZED HTH-type transcriptional regulator PYRAB04820|Pyrococcus abyssi

Query: 1 KNDFRLQP 8
K DFRL+P
Sbjct: 140 KEDFRLEP 147


>sp|SYM_THEVO|METHIONINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 NDFRLQPS 9
NDF ++PS
Sbjct: 522 NDFSVKPS 529




162|Sequence|806|815|LQPSSTSESM

>sp|Y1533_ARCFU|UNCHARACTERIZED transporter AF_1533|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LQPSSTS 7
+QPSSTS
Sbjct: 232 VQPSSTS 238




163|Sequence|811|820|TSESMDQLLN

***** No hits found ******


164|Sequence|816|825|DQLLNKNREG

>sp|HELS_THEKO|ATP-DEPENDENT DNA helicase Hel308|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 LLNKNRE 9
LLNKNRE
Sbjct: 585 LLNKNRE 591


>sp|NAH3_METJA|PROBABLE Na(+)/H(+) antiporter 3|Methanocaldococcus jannaschii (strain ATCC

Query: 1 DQLLNKN 7
D+LLNKN
Sbjct: 254 DELLNKN 260


>sp|Y1303_METJA|UNCHARACTERIZED polyferredoxin-like protein MJ1303|Methanocaldococcus jannaschii

Query: 2 QLLNKNREG 10
+LLN REG
Sbjct: 130 ELLNTKREG 138


>sp|SYK_THEVO|LYSINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 DQLLNKNREG 10
++ LNK REG
Sbjct: 319 ERYLNKYREG 328


>sp|SYT_STAMF|THREONINE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 1 DQLLNKNREG 10
++L N+N+EG
Sbjct: 24 EELTNENKEG 33


>sp|APE2_SULTO|PROBABLE aminopeptidase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 DQLLNKNR 8
D+LLNK R
Sbjct: 647 DELLNKYR 654


>sp|SYI_METKA|ISOLEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 QLLNKNREG 10
++L KNR+G
Sbjct: 30 KVLEKNRDG 38




165|Sequence|821|830|KNREGEKSRD

>sp|DPCKG_THEPD|GTP-DEPENDENT dephospho-CoA kinase|Thermofilum pendens (strain DSM 2475

Query: 1 KNREGEKSRD 10
KNR GE SR+
Sbjct: 88 KNRPGEISRE 97


>sp|Y021_AERPE|PUTATIVE antitoxin APE_0472b.1|Aeropyrum pernix (strain ATCC 700893

Query: 3 REGEKSRD 10
REGE +RD
Sbjct: 50 REGEDARD 57




166|Sequence|826|835|EKSRDLIKDK

>sp|Y049_PYRAE|UNCHARACTERIZED serpin-like protein PAE0049|Pyrobaculum aerophilum (strain ATCC

Query: 1 EKSRDLIKD 9
EK+R LIKD
Sbjct: 134 EKTRGLIKD 142


>sp|GLYA_METTM|SERINE hydroxymethyltransferase|Methanothermobacter marburgensis (strain

Query: 1 EKSRDLIKD 9
E+ RDL+KD
Sbjct: 9 ERIRDLMKD 17


>sp|Y686_METJA|UNCHARACTERIZED protein MJ0686|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KSRDLIK 8
KSRDLIK
Sbjct: 295 KSRDLIK 301


>sp|CMR2_PYRFU|CRISPR system Cmr subunit Cmr2|Pyrococcus furiosus (strain ATCC 43587

Query: 1 EKSRDLIKDK 10
EK+RDL+ +K
Sbjct: 728 EKARDLLNNK 737


>sp|SYR_PYRIL|ARGININE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 EKSRDLIKDK 10
E+S DL+K+K
Sbjct: 460 ERSADLVKEK 469


>sp|MUTS2_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 1 EKSRDLIKD 9
E+SRDL+ D
Sbjct: 832 ERSRDLLAD 840


>sp|HELS_METTH|ATP-DEPENDENT DNA helicase Hel308|Methanothermobacter thermautotrophicus (strain

Query: 2 KSRDLIKDK 10
KSRD ++DK
Sbjct: 538 KSRDPVRDK 546


>sp|DPOL3_SACSH|DNA polymerase 3|Saccharolobus shibatae (strain ATCC 51178

Query: 1 EKSRDLIK 8
EK+RDL+K
Sbjct: 325 EKNRDLVK 332


>sp|YPV8_METTF|UNCHARACTERIZED protein ORF8|Methanothermobacter thermautotrophicus

Query: 1 EKSRDLIK 8
EKSR L+K
Sbjct: 336 EKSRSLLK 343


>sp|GVPN1_HALSA|GAS vesicle ATPase GvpN1|Halobacterium salinarum (strain ATCC 700922

Query: 2 KSRDLIKDK 10
KS+D+I+D+
Sbjct: 148 KSKDIIRDR 156


>sp|ENGB_METMA|PROBABLE GTP-binding protein EngB|Methanosarcina mazei (strain ATCC

Query: 1 EKSRDLIKDK 10
E+ +D++KDK
Sbjct: 74 ERKQDIVKDK 83




167|Sequence|831|840|LIKDKIEPSA

>sp|IF5A_NANEQ|TRANSLATION initiation factor 5A|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 IKDKIEPSA 10
+KDK+EP A
Sbjct: 118 LKDKVEPGA 126


>sp|Y179_ARCFU|UNCHARACTERIZED protein AF_0179|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LIKDKIEPS 9
+++D+IEPS
Sbjct: 20 VLRDEIEPS 28


>sp|XPB2_SULTO|DNA 3'-5' translocase XPB2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LIKDKIE 7
LIKDKIE
Sbjct: 62 LIKDKIE 68


>sp|THIM2_METST|HYDROXYETHYLTHIAZOLE kinase 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 LIKDKIEP 8
L++D+IEP
Sbjct: 68 LLEDQIEP 75


>sp|PURL_SACS2|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 KDKIEPS 9
KDKI+PS
Sbjct: 180 KDKIKPS 186


>sp|PURL_SACI7|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 3 KDKIEPS 9
KDKI+PS
Sbjct: 180 KDKIKPS 186


>sp|PURL_SACI2|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain L.S.2.15 /

Query: 3 KDKIEPS 9
KDKI+PS
Sbjct: 180 KDKIKPS 186


>sp|PURL_SACI1|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 3 KDKIEPS 9
KDKI+PS
Sbjct: 180 KDKIKPS 186


>sp|PURL_SACI6|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain M.16.4 /

Query: 3 KDKIEPS 9
KDKI+PS
Sbjct: 180 KDKIKPS 186


>sp|PURL_SACI4|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain M.14.25 /

Query: 3 KDKIEPS 9
KDKI+PS
Sbjct: 180 KDKIKPS 186


>sp|PURL_SACI3|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Saccharolobus islandicus (strain M.16.27)

Query: 3 KDKIEPS 9
KDKI+PS
Sbjct: 180 KDKIKPS 186


>sp|CBIT_METTH|PROBABLE cobalt-precorrin-6B C(15)-methyltransferase

Query: 1 LIKDKIEP 8
+IKDK++P
Sbjct: 119 IIKDKLKP 126


>sp|RS3_CENSY|SMALL ribosomal subunit protein uS3|Cenarchaeum symbiosum (strain A)

Query: 2 IKDKIEPSA 10
+KD+ +PSA
Sbjct: 212 VKDETDPSA 220


>sp|FTR_METBU|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 2 IKDKIEPS 9
IKDK+E S
Sbjct: 228 IKDKVEGS 235




168|Sequence|836|845|IEPSAKDSFI

>sp|DHYS_PYRAE|PROBABLE deoxyhypusine synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 IEPSAKDSFI 10
++PSAK FI
Sbjct: 268 VKPSAKSVFI 277


>sp|RS4E_METS3|SMALL ribosomal subunit protein eS4|Methanobrevibacter smithii (strain

Query: 1 IEPSAKDSFI 10
IE SAKD F+
Sbjct: 210 IENSAKDEFL 219


>sp|END4_METLZ|PROBABLE endonuclease 4|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 IEPSAKDSFI 10
IEPS ++FI
Sbjct: 44 IEPSIAEAFI 53


>sp|FAEHP_METST|BIFUNCTIONAL enzyme Fae/Hps|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 IEPSAKD 7
I+PSAKD
Sbjct: 118 IDPSAKD 124


>sp|RPO3_AERPE|DNA-DIRECTED RNA polymerase subunit Rpo3|Aeropyrum pernix (strain ATCC 700893

Query: 2 EPSAKDSFI 10
EPS +D F+
Sbjct: 92 EPSEEDCFV 100




169|Sequence|841|850|KDSFIENSSS

>sp|SYV_THEAC|VALINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 KDSFIEN 7
KD+FIEN
Sbjct: 358 KDAFIEN 364


>sp|PGK2_METJA|2-PHOSPHOGLYCERATE kinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KDSFIENS 8
KD ++ENS
Sbjct: 204 KDKYLENS 211


>sp|NADE_PYRHO|NH(3)-DEPENDENT NAD(+) synthetase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 DSFIEN 7
DSF+EN
Sbjct: 88 DSFVEN 93


>sp|K6PF_METJA|BIFUNCTIONAL ADP-specific glucokinase/phosphofructokinase|Methanocaldococcus

Query: 1 KDSFIEN 7
KDSFIE+
Sbjct: 321 KDSFIED 327


>sp|PINA_SULAC|HOLLIDAY junction branch migration ATPase|Sulfolobus acidocaldarius (strain

Query: 1 KDSFIE 6
KDSFIE
Sbjct: 188 KDSFIE 193


>sp|GGGPS_SACS2|GERANYLGERANYLGLYCERYL phosphate synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 SFIENSSS 10
SFI+N+SS
Sbjct: 199 SFIKNASS 206




170|Sequence|846|855|ENSSSNCTSG

>sp|PYRG_METHJ|CTP synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 NSSSNCTSG 10
NSS N T+G
Sbjct: 83 NSSHNITTG 91




171|Sequence|851|860|NCTSGSSKPN

>sp|G1PDH_STAMF|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Staphylothermus marinus (strain ATCC 43588

Query: 2 CTSGSSKP 9
C +GSS+P
Sbjct: 242 CIAGSSRP 249


>sp|G1PDH_IGNH4|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 CTSGSSKP 9
C +GSS+P
Sbjct: 238 CIAGSSRP 245


>sp|ACDE1_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Archaeoglobus

Query: 3 TSGSSKP 9
T+GSSKP
Sbjct: 78 TAGSSKP 84


>sp|G1PDH_NITMS|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Nitrosopumilus maritimus (strain SCM1)

Query: 1 NCTSGSSKP 9
+C +GSS+P
Sbjct: 241 SCIAGSSRP 249


>sp|PYRI_METAC|ASPARTATE carbamoyltransferase regulatory chain|Methanosarcina acetivorans

Query: 1 NCTSGSSKP 9
NC S SS+P
Sbjct: 113 NCISNSSEP 121


>sp|G1PDH_CENSY|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Cenarchaeum symbiosum (strain A)

Query: 1 NCTSGSSKP 9
+C +GSS+P
Sbjct: 241 SCIAGSSRP 249


>sp|IF2P_METAR|PROBABLE translation initiation factor IF-2|Methanocella arvoryzae (strain

Query: 1 NCTSGSSKP 9
NCT SKP
Sbjct: 475 NCTFRQSKP 483


>sp|PYRI_METBF|ASPARTATE carbamoyltransferase regulatory chain|Methanosarcina barkeri

Query: 1 NCTSGSSKP 9
NC S SS+P
Sbjct: 113 NCISNSSEP 121


>sp|EF2_METMT|ELONGATION factor 2|Methanococcoides methylutens

Query: 4 SGSSKPN 10
SG++KPN
Sbjct: 327 SGAAKPN 333


>sp|MEND_HALLT|2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE synthase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 CTSGSSKPN 10
CTSG++ N
Sbjct: 77 CTSGTAAAN 85


>sp|MEND_HALMA|2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE synthase|Haloarcula marismortui (strain ATCC 43049

Query: 2 CTSGSSKPN 10
CTSG++ N
Sbjct: 77 CTSGTAAAN 85




172|Sequence|856|865|SSKPNSPSIS

>sp|SYFB_METAR|PHENYLALANINE--TRNA ligase beta subunit|Methanocella arvoryzae (strain DSM 22066

Query: 2 SKPNSPSI 9
S PN+PS+
Sbjct: 350 SYPNTPSV 357


>sp|NADE_STAMF|NH(3)-DEPENDENT NAD(+) synthetase|Staphylothermus marinus (strain ATCC 43588

Query: 1 SSKPNSPSI 9
+SKP+SP++
Sbjct: 190 TSKPSSPAL 198


>sp|PCNA_METB6|DNA polymerase sliding clamp|Methanoregula boonei (strain DSM 21154

Query: 4 PNSPSIS 10
PNSP+I+
Sbjct: 120 PNSPTIN 126


>sp|Y1507_ARCFU|UNCHARACTERIZED protein AF_1507|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 SKPNSPSI 9
SKP SP I
Sbjct: 49 SKPESPKI 56




173|Sequence|861|870|SPSISPSILS

>sp|SYFB_METPE|PHENYLALANINE--TRNA ligase beta subunit|Methanosphaerula palustris (strain ATCC

Query: 1 SPSISPSI 8
SP +SPS+
Sbjct: 263 SPDLSPSV 270




174|Sequence|866|875|PSILSNTEHK

>sp|DNLI2_KORCO|DNA ligase 2|Korarchaeum cryptofilum (strain OPF8)

Query: 1 PSILSNTE 8
PS++SN E
Sbjct: 503 PSVISNIE 510


>sp|MTAB_METBF|METHANOL--CORRINOID protein co-methyltransferase|Methanosarcina barkeri (strain

Query: 1 PSILSNTEH 9
P+I+ TEH
Sbjct: 79 PAIILETEH 87


>sp|METE_SACI7|METHIONINE synthase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 PSILSNTEHK 10
PS++S E+K
Sbjct: 99 PSVVSKIEYK 108


>sp|METE_SACI6|METHIONINE synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 PSILSNTEHK 10
PS++S E+K
Sbjct: 99 PSVVSKIEYK 108


>sp|METE_SACI4|METHIONINE synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 PSILSNTEHK 10
PS++S E+K
Sbjct: 99 PSVVSKIEYK 108


>sp|METE_SACI3|METHIONINE synthase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 PSILSNTEHK 10
PS++S E+K
Sbjct: 99 PSVVSKIEYK 108


>sp|METE_SACI2|METHIONINE synthase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 PSILSNTEHK 10
PS++S E+K
Sbjct: 99 PSVVSKIEYK 108


>sp|METE_SACI1|METHIONINE synthase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 PSILSNTEHK 10
PS++S E+K
Sbjct: 99 PSVVSKIEYK 108




175|Sequence|871|880|NTEHKRGPEV

>sp|NADE_PYRFU|NH(3)-DEPENDENT NAD(+) synthetase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 NTEHKR----GPEV 10
N+EHKR GP+V
Sbjct: 237 NSEHKRRLPIGPKV 250


>sp|G3P_PYRIL|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Pyrobaculum islandicum (strain DSM 4184

Query: 3 EHKRGP 8
EHK+GP
Sbjct: 175 EHKKGP 180


>sp|G3P_PYRCJ|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 EHKRGP 8
EHK+GP
Sbjct: 175 EHKKGP 180


>sp|G3P_PYRAE|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 EHKRGP 8
EHK+GP
Sbjct: 175 EHKKGP 180


>sp|KGSDH_HALVD|ALPHA-KETOGLUTARATE semialdehyde dehydrogenase|Haloferax volcanii (strain ATCC 29605

Query: 2 TEHKRGPEV 10
T+H+ GP+V
Sbjct: 317 TDHEMGPQV 325


>sp|G3P_PYRNV|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 EHKRGP 8
EHK+GP
Sbjct: 175 EHKKGP 180


>sp|RIFK_CENSY|RIBOFLAVIN kinase|Cenarchaeum symbiosum (strain A)

Query: 1 NTEHKRGPEV 10
+T+ K GPE+
Sbjct: 102 DTDRKHGPEI 111


>sp|TRPE_SACS2|ANTHRANILATE synthase component 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 EHKRGP 8
E+KRGP
Sbjct: 351 EYKRGP 356


>sp|SRP19_METST|SIGNAL recognition particle 19 kDa|Methanosphaera stadtmanae (strain

Query: 1 NTEHKRG 7
N+EH RG
Sbjct: 11 NSEHSRG 17


>sp|Y1227_METJA|PUTATIVE glycyl-radical enzyme activating enzyme|Methanocaldococcus

Query: 3 EHKRGPEV 10
EHKRG V
Sbjct: 44 EHKRGMTV 51




176|Sequence|876|885|RGPEVTSQGV

>sp|Y227_METJA|UNCHARACTERIZED protein MJ0227|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RGPEVTSQ 8
+GP+VTS+
Sbjct: 156 KGPDVTSE 163


>sp|Y994_METTH|PUTATIVE aminohydrolase MTH_994|Methanothermobacter thermautotrophicus

Query: 1 RGPEVTSQ 8
RGPE+T Q
Sbjct: 13 RGPELTPQ 20




177|Sequence|881|890|TSQGVQTSSP

***** No hits found ******


178|Sequence|886|895|QTSSPACKQE

>sp|RS19_HYPBU|SMALL ribosomal subunit protein uS19|Hyperthermus butylicus (strain DSM

Query: 4 SPACKQ 9
SP CKQ
Sbjct: 119 SPTCKQ 124




179|Sequence|891|900|ACKQEKDDKE

>sp|Y1137_METJA|UNCHARACTERIZED protein MJ1137|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CKQEKDD 8
CK+EK+D
Sbjct: 61 CKREKED 67


>sp|SAT_NITMS|SULFATE adenylyltransferase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 ACKQEKDDKE 10
AC + DDKE
Sbjct: 332 ACPHDNDDKE 341




180|Sequence|896|905|KDDKEEKKDA

>sp|HUTH_THEVO|PROBABLE histidine ammonia-lyase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 KDDKEEKKDA 10
K DKE+ +DA
Sbjct: 267 KSDKEKVQDA 276




181|Sequence|901|910|EKKDAAEQVR

>sp|SYA_THEKO|ALANINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 EKKDAAEQV 9
EKK+AAE V
Sbjct: 498 EKKEAAEYV 506




182|Sequence|906|915|AEQVRKSTLN

>sp|TRF2_THEAC|TRICORN protease-interacting factor F2|Thermoplasma acidophilum (strain

Query: 1 AEQVRKSTLN 10
AEQ+RK + N
Sbjct: 754 AEQIRKPSYN 763


>sp|SYL_METAC|LEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 AEQVRKSTLN 10
AE+ KSTLN
Sbjct: 812 AEEAVKSTLN 821


>sp|SYM_METHJ|METHIONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 AEQVRKST 8
AEQV KST
Sbjct: 580 AEQVPKST 587


>sp|MRE11_METAC|DNA double-strand break repair protein|Methanosarcina acetivorans

Query: 1 AEQVRKSTLN 10
AE++R+ +LN
Sbjct: 336 AEEIRRMSLN 345




183|Sequence|911|920|KSTLNPNAKE

>sp|APE2_SULTO|PROBABLE aminopeptidase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 TLNPNAKE 10
TL+PN KE
Sbjct: 624 TLDPNVKE 631


>sp|AATB3_METHJ|A-TYPE ATP synthase subunit B|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 STLNPNAKE 10
S +NP+A+E
Sbjct: 118 SPINPSARE 126


>sp|RSAMH_PYRHO|(R)-S-ADENOSYL-L-METHIONINE hydrolase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 LNPNAK 9
+NPNAK
Sbjct: 25 INPNAK 30


>sp|Y988_METJA|UNCHARACTERIZED protein MJ0988|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 STLNPNAK 9
S LNPN K
Sbjct: 36 SQLNPNGK 43


>sp|SYFB_METJA|PHENYLALANINE--TRNA ligase beta subunit|Methanocaldococcus jannaschii (strain ATCC

Query: 1 KSTLNPNAKE 10
+ST+ PN KE
Sbjct: 268 QSTIYPNLKE 277


>sp|AATB_METST|A-TYPE ATP synthase subunit B|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 STLNPNAKE 10
S +NP+A+E
Sbjct: 120 SPMNPSARE 128


>sp|PYRH_PYRIL|URIDYLATE kinase|Pyrobaculum islandicum (strain DSM 4184

Query: 4 LNPNAK 9
+NPNAK
Sbjct: 145 INPNAK 150


>sp|NIFK_METTL|NITROGENASE molybdenum-iron protein beta chain|Methanothermococcus

Query: 1 KSTLNPN 7
K T+NPN
Sbjct: 17 KGTINPN 23




184|Sequence|916|925|PNAKEFNPRS

>sp|SRP54_METKA|SIGNAL recognition particle 54 kDa|Methanopyrus kandleri (strain AV19 /

Query: 4 KEFNPRS 10
+EFNPRS
Sbjct: 281 EEFNPRS 287


>sp|PYRH_METBU|URIDYLATE kinase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PNAKEFN 7
PNAK+F+
Sbjct: 153 PNAKKFD 159


>sp|MPTE_METJA|6-HYDROXYMETHYL-7,8-DIHYDROPTERIN pyrophosphokinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PNAKEFNPRS 10
PN KE N R+
Sbjct: 153 PNYKELNLRN 162


>sp|NAC_METM5|NASCENT polypeptide-associated complex protein|Methanococcus maripaludis

Query: 1 PNAKEFNPR 9
P +FNPR
Sbjct: 3 PGGGKFNPR 11


>sp|FLPA_THEAC|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Thermoplasma acidophilum (strain

Query: 2 NAKEFNPRS 10
N EF PRS
Sbjct: 165 NMDEFQPRS 173


>sp|RL2_METST|LARGE ribosomal subunit protein uL2|Methanosphaera stadtmanae (strain

Query: 4 KEFNPRS 10
K FNPRS
Sbjct: 150 KAFNPRS 156


>sp|NAC_METM7|NASCENT polypeptide-associated complex protein|Methanococcus maripaludis

Query: 1 PNAKEFNPR 9
P +FNPR
Sbjct: 3 PGGGKFNPR 11


>sp|NAC_METMP|NASCENT polypeptide-associated complex protein|Methanococcus maripaludis

Query: 1 PNAKEFNPR 9
P +FNPR
Sbjct: 3 PGGGKFNPR 11


>sp|NAC_METM6|NASCENT polypeptide-associated complex protein|Methanococcus maripaludis

Query: 1 PNAKEFNPR 9
P +FNPR
Sbjct: 3 PGGGKFNPR 11


>sp|PCNA1_SACS2|DNA polymerase sliding clamp 1|Saccharolobus solfataricus (strain

Query: 1 PNAKEF 6
PNAK+F
Sbjct: 7 PNAKDF 12


>sp|GLYA_PICTO|SERINE hydroxymethyltransferase|Picrophilus torridus (strain ATCC 700027

Query: 2 NAKEFNPR 9
N+K F+PR
Sbjct: 87 NSKTFDPR 94




185|Sequence|921|930|FNPRSFSQPK

>sp|SRP54_METKA|SIGNAL recognition particle 54 kDa|Methanopyrus kandleri (strain AV19 /

Query: 1 FNPRSF 6
FNPRSF
Sbjct: 283 FNPRSF 288


>sp|DCUP_THEAC|UROPORPHYRINOGEN decarboxylase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 FNPRSFSQP 9
F+P SFS P
Sbjct: 108 FDPSSFSHP 116


>sp|GLMA_PYRHO|EXO-BETA-D-GLUCOSAMINIDASE horikoshii (strain ATCC 700860

Query: 3 PRSFSQP 9
P+SFS+P
Sbjct: 237 PKSFSEP 243


>sp|Y160_METLZ|PUTATIVE HTH-type transcriptional regulatory protein|Methanocorpusculum

Query: 2 NPRSFSQPK 10
NP S +QPK
Sbjct: 208 NPESDAQPK 216


>sp|Y870_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 3 PRSFSQPK 10
PR+FS P+
Sbjct: 289 PRNFSNPE 296


>sp|SRP54_PYRIL|SIGNAL recognition particle 54 kDa|Pyrobaculum islandicum (strain DSM 4184

Query: 1 FNPRSF 6
FNPR F
Sbjct: 281 FNPRKF 286


>sp|SRP54_PYRAR|SIGNAL recognition particle 54 kDa|Pyrobaculum arsenaticum (strain DSM

Query: 1 FNPRSF 6
FNPR F
Sbjct: 281 FNPRKF 286


>sp|SRP54_PYRCJ|SIGNAL recognition particle 54 kDa|Pyrobaculum calidifontis (strain DSM

Query: 1 FNPRSF 6
FNPR F
Sbjct: 280 FNPRKF 285




186|Sequence|926|935|FSQPKPSTTP

>sp|KPYK_AERPE|PYRUVATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 3 QPKPSTTP 10
+P+P++TP
Sbjct: 338 RPRPTSTP 345




187|Sequence|931|940|PSTTPTSPRP

>sp|DNAG_CALMQ|DNA primase DnaG|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 PSTTPTSPRP 10
PS PTSP+P
Sbjct: 299 PSAAPTSPQP 308


>sp|DPOL_THELI|DNA polymerase|Thermococcus litoralis

Query: 1 PSTTPTSPRP 10
PS TSP P
Sbjct: 856 PSVILTSPEP 865


>sp|FWDF_METJA|POLYFERREDOXIN protein FwdF|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 TPTSPRP 10
TP++P+P
Sbjct: 179 TPSNPKP 185


>sp|COXX_HALWD|PROTOHEME IX farnesyltransferase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 TTPTSPRP 10
TTP+ P P
Sbjct: 163 TTPSKPEP 170


>sp|ATGT_THEAC|TRNA-GUANINE(15) transglycosylase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 TTPTSPRP 10
TTP +P+P
Sbjct: 124 TTPGTPKP 131


>sp|PYRG_PYRCJ|CTP synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 TTPTSPRP 10
+ PT PRP
Sbjct: 509 SRPTRPRP 516




188|Sequence|936|945|TSPRPQAQPS

>sp|GFCR_HALVD|TRANSCRIPTIONAL regulator GfcR|Haloferax volcanii (strain ATCC 29605

Query: 1 TSPRPQAQP 9
T P P+A+P
Sbjct: 46 TEPEPRAEP 54


>sp|CSG_HALJT|CELL surface glycoprotein|Haloarcula japonica (strain ATCC 49778

Query: 2 SPRPQAQPS 10
SP PQ QP+
Sbjct: 105 SPIPQDQPT 113




189|Sequence|941|950|QAQPSPSMVG

>sp|RNP1_IGNH4|RIBONUCLEASE P protein component 1|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 AQPSPSMVG 10
A P PSM G
Sbjct: 22 AHPDPSMKG 30


>sp|RNP3_METBU|RIBONUCLEASE P protein component 3|Methanococcoides burtonii (strain DSM 6242

Query: 3 QPSPSMVG 10
+PSPS++G
Sbjct: 232 EPSPSVLG 239


>sp|DP2S_ARCFU|DNA polymerase II small subunit|Archaeoglobus fulgidus (strain ATCC

Query: 1 QAQPSPSMVG 10
QA+P P+ G
Sbjct: 330 QAEPQPAFEG 339


>sp|RNP1_DESA1|RIBONUCLEASE P protein component 1|Desulfurococcus amylolyticus (strain DSM

Query: 4 PSPSMVG 10
P PS+VG
Sbjct: 24 PDPSLVG 30




190|Sequence|946|955|PSMVGHQQPT

>sp|AKSA_METTH|HOMOCITRATE synthase AksA|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 PSMVGHQQ 8
P M+GHQ+
Sbjct: 320 PEMIGHQR 327


>sp|GSA_CALMQ|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 PSMVGHQQPT 10
P ++GH+ PT
Sbjct: 61 PLILGHRHPT 70


>sp|Y1435_PYRAB|UNCHARACTERIZED protein PYRAB14350|Pyrococcus abyssi (strain GE5 /

Query: 1 PSMVGHQQPT 10
P +VG+ +PT
Sbjct: 290 PKIVGYSRPT 299


>sp|LEU1_METTH|PROBABLE 2-isopropylmalate synthase|Methanothermobacter thermautotrophicus

Query: 1 PSMVGHQQ 8
P MVGH++
Sbjct: 316 PEMVGHKR 323


>sp|LEU1_ARCFU|PROBABLE 2-isopropylmalate synthase|Archaeoglobus fulgidus (strain ATCC

Query: 1 PSMVGHQQ 8
P MVGH++
Sbjct: 310 PEMVGHKR 317


>sp|GSA_THEAC|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PSMVGHQQP 9
PS++GH P
Sbjct: 57 PSILGHADP 65


>sp|Y614_PYRHO|UNCHARACTERIZED protein PH0614|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PSMVGHQQPT 10
P +VG+ +PT
Sbjct: 289 PRIVGYSRPT 298


>sp|HELS_NATPD|ATP-DEPENDENT DNA helicase Hel308|Natronomonas pharaonis (strain ATCC 35678

Query: 5 GHQQP 9
GHQQP
Sbjct: 713 GHQQP 717


>sp|FAU1_METKA|PROBABLE ribonuclease FAU-1|Methanopyrus kandleri (strain AV19 /

Query: 1 PSMVGHQ 7
P+MVGH
Sbjct: 266 PTMVGHH 272


>sp|GUAAB_METMP|GMP synthase [glutamine-hydrolyzing] subunit B|Methanococcus

Query: 1 PSMVGHQQP 9
P + H+QP
Sbjct: 179 PDQIAHRQP 187


>sp|GUAAB_METM7|GMP synthase [glutamine-hydrolyzing] subunit B|Methanococcus

Query: 1 PSMVGHQQP 9
P + H+QP
Sbjct: 179 PDQIAHRQP 187


>sp|LEU1_METAC|PROBABLE 2-isopropylmalate synthase|Methanosarcina acetivorans (strain ATCC

Query: 1 PSMVGHQQ 8
P MVGH++
Sbjct: 322 PEMVGHRR 329


>sp|LEU1_METMA|PROBABLE 2-isopropylmalate synthase|Methanosarcina mazei (strain ATCC

Query: 1 PSMVGHQQ 8
P MVGH++
Sbjct: 322 PEMVGHRR 329


>sp|GUAAB_METVS|GMP synthase [glutamine-hydrolyzing] subunit B|Methanococcus vannielii

Query: 1 PSMVGHQQP 9
P + H+QP
Sbjct: 179 PEKIAHRQP 187


>sp|CIMA_METTH|PUTATIVE (R)-citramalate synthase CimA|Methanothermobacter

Query: 1 PSMVGH 6
P MVGH
Sbjct: 302 PEMVGH 307


>sp|DGGGP_HALSA|DIGERANYLGERANYLGLYCERYL phosphate synthase|Halobacterium salinarum (strain ATCC 700922

Query: 1 PSMVGHQQ 8
P +VGHQ+
Sbjct: 192 PVVVGHQR 199


>sp|DGGGP_HALS3|DIGERANYLGERANYLGLYCERYL phosphate synthase|Halobacterium salinarum (strain ATCC 29341

Query: 1 PSMVGHQQ 8
P +VGHQ+
Sbjct: 192 PVVVGHQR 199


>sp|RS19_ARCFU|SMALL ribosomal subunit protein uS19|Archaeoglobus fulgidus (strain ATCC

Query: 1 PSMVGHQ 7
P M+GH+
Sbjct: 97 PEMIGHR 103


>sp|MCRG_METVO|METHYL-COENZYME M reductase subunit gamma|Methanococcus voltae

Query: 3 MVGHQQPT 10
++GH+QP+
Sbjct: 42 IMGHRQPS 49


>sp|GPMI_HALSA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Halobacterium salinarum (strain ATCC 700922

Query: 1 PSMVGH 6
P MVGH
Sbjct: 397 PDMVGH 402




191|Sequence|951|960|HQQPTPVYTQ

>sp|THIC_META3|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 HQQPTPVYTQ 10
HQ+ P+Y+Q
Sbjct: 197 HQKENPLYSQ 206


>sp|F16PA_METHJ|FRUCTOSE-1,6-BISPHOSPHATASE class 1|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 HQQPTPVY 8
H Q TPVY
Sbjct: 287 HHQKTPVY 294


>sp|HELS_METJA|ATP-DEPENDENT DNA helicase Hel308|Methanocaldococcus jannaschii (strain ATCC

Query: 2 QQPTPVYTQ 10
Q+P P+Y++
Sbjct: 907 QKPEPIYSK 915


>sp|PSB1_CALMQ|PROTEASOME subunit beta 1|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 HQQPTPVYT 9
HQ P P+ T
Sbjct: 84 HQAPVPIKT 92


>sp|Y148_PYRAR|UPF0215 protein Pars_0148|Pyrobaculum arsenaticum (strain DSM 13514

Query: 4 PTPVYTQ 10
PTP YT+
Sbjct: 123 PTPYYTK 129


>sp|Y119_PYRCJ|UPF0215 protein Pcal_0119|Pyrobaculum calidifontis (strain DSM 21063

Query: 4 PTPVYTQ 10
PTP YT+
Sbjct: 123 PTPYYTK 129


>sp|CHEB2_METAC|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase 2|Methanosarcina

Query: 2 QQPTPV 7
+QPTPV
Sbjct: 73 EQPTPV 78


>sp|Y074_METJA|UNCHARACTERIZED ATP-binding protein MJ0074|Methanocaldococcus jannaschii (strain

Query: 4 PTPVY 8
PTPVY
Sbjct: 321 PTPVY 325


>sp|Y801_METJA|UNCHARACTERIZED ATP-binding protein MJ0801|Methanocaldococcus jannaschii (strain

Query: 4 PTPVYT 9
P PVYT
Sbjct: 342 PVPVYT 347


>sp|CAPPA_PYRAR|PHOSPHOENOLPYRUVATE carboxylase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 QPTPVYT 9
+PTP YT
Sbjct: 431 RPTPTYT 437


>sp|MES_EURX9|METALLOPTERIN-DEPENDENT ergothioneine synthase|Euryarchaeota archaeon (strain ADurb.Bin009)

Query: 4 PTPVYTQ 10
P PVYT+
Sbjct: 574 PLPVYTE 580




192|Sequence|956|965|PVYTQPVCFA

>sp|BSUHB_ARCFU|FRUCTOSE-1,6-BISPHOSPHATASE/INOSITOL-1-MONOPHOSPHATASE fulgidus (strain ATCC 49558

Query: 1 PVYTQPVCFA 10
PVY+ +CF+
Sbjct: 95 PVYSVSLCFS 104


>sp|TFE_CALMQ|TRANSCRIPTION factor E|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 PVYTQPVCF 9
P+Y P CF
Sbjct: 122 PIYICPKCF 130


>sp|MES_EURX9|METALLOPTERIN-DEPENDENT ergothioneine synthase|Euryarchaeota archaeon (strain ADurb.Bin009)

Query: 1 PVYTQP 6
PVYT+P
Sbjct: 576 PVYTEP 581


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 PVYTQPVC 8
PV+ PVC
Sbjct: 464 PVWVCPVC 471


>sp|TRM1_HALLT|TRNA (guanine(26)-N(2))-dimethyltransferase|Halorubrum lacusprofundi

Query: 1 PVYTQPVC 8
PV T PVC
Sbjct: 253 PVDTCPVC 260


>sp|CDPAS_METM7|CDP-ARCHAEOL synthase|Methanococcus maripaludis (strain C7 /

Query: 1 PVYTQPV 7
P+Y QPV
Sbjct: 141 PLYQQPV 147


>sp|SOR_PYRFU|SUPEROXIDE reductase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 VYTQPVCF 9
VYT+P+ +
Sbjct: 87 VYTEPIAY 94


>sp|Y1287_METMA|UPF0313 protein MM_1287|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PVYTQPV 7
P YT+PV
Sbjct: 312 PSYTEPV 318


>sp|Y1635_METJA|TNPB-LIKE protein MJ1635|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PVYTQPVC 8
P YT +C
Sbjct: 322 PAYTSTIC 329




193|Sequence|961|970|PVCFAPNMMY

>sp|PURL_METST|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 VCFAPNMMY 10
+C APN+++
Sbjct: 347 ICHAPNILF 355


>sp|SFSA_SULTO|SUGAR fermentation stimulation protein homolog|Sulfurisphaera tokodaii

Query: 2 VCFAPN 7
VCF+PN
Sbjct: 165 VCFSPN 170


>sp|SFSA_SULAC|SUGAR fermentation stimulation protein homolog|Sulfolobus acidocaldarius

Query: 2 VCFAPN 7
+CF+PN
Sbjct: 170 ICFSPN 175


>sp|CARB_METLZ|CARBAMOYL phosphate synthase large chain|Methanocorpusculum labreanum (strain

Query: 1 PVCFAPNMMY 10
P CF P + Y
Sbjct: 339 PACFEPAVDY 348


>sp|RL4_PYRAE|LARGE ribosomal subunit protein uL4|Pyrobaculum aerophilum (strain ATCC

Query: 3 CFAPN 7
CFAPN
Sbjct: 108 CFAPN 112


>sp|DNLI_METLZ|DNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 4 FAPNMMY 10
F PN++Y
Sbjct: 60 FGPNLLY 66


>sp|CDPAS_PYRIL|CDP-ARCHAEOL synthase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 VCFAPNMMY 10
+ +APN++Y
Sbjct: 64 IGYAPNLLY 72




194|Sequence|966|975|PNMMYPVPVS

>sp|K6PF_THEZI|ADP-SPECIFIC phosphofructokinase|Thermococcus zilligii

Query: 1 PNMMYPV 7
PN+ YPV
Sbjct: 138 PNLFYPV 144


>sp|K6PF_THEKO|ADP-SPECIFIC phosphofructokinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PNMMYPV 7
PN+ YPV
Sbjct: 138 PNLFYPV 144


>sp|DPOL_THELI|DNA polymerase|Thermococcus litoralis

Query: 1 PNMMYPVPVS 10
P MY +PV+
Sbjct: 1312 PEFMYELPVT 1321


>sp|COFG_METTP|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 PNMMYPVPV 9
PN+M PVP+
Sbjct: 246 PNLMDPVPL 254


>sp|RPIA_HALMA|RIBOSE-5-PHOSPHATE isomerase A|Haloarcula marismortui (strain ATCC 43049

Query: 3 MMYPVPV 9
+ YPVPV
Sbjct: 129 LSYPVPV 135


>sp|Y771_ARCFU|UNCHARACTERIZED protein AF_0771|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 NMMYPVPV 9
N YP+P+
Sbjct: 14 NFAYPIPL 21


>sp|MTRE_METBU|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit E|Methanococcoides burtonii (strain

Query: 1 PNMMYP 6
P MMYP
Sbjct: 44 PQMMYP 49


>sp|Y900_METJA|UNCHARACTERIZED protein MJ0900|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PNMMYPV 7
PN++YPV
Sbjct: 51 PNIIYPV 57


>sp|SYY_METMJ|TYROSINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 PNMMYPVPV 9
P++ YP PV
Sbjct: 186 PSIGYPAPV 194




195|Sequence|971|980|PVPVSPGVQP

>sp|APGM_SULAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Sulfolobus acidocaldarius (strain ATCC

Query: 3 PVSPGVQP 10
P+SPG+ P
Sbjct: 50 PISPGIVP 57


>sp|APGM_SACI7|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Saccharolobus islandicus (strain

Query: 3 PVSPGVQP 10
P+SPGV P
Sbjct: 50 PISPGVIP 57


>sp|APGM_SACI2|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Saccharolobus islandicus (strain L.S.2.15

Query: 3 PVSPGVQP 10
P+SPGV P
Sbjct: 50 PISPGVIP 57


>sp|APGM_SACI1|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Saccharolobus islandicus (strain

Query: 3 PVSPGVQP 10
P+SPGV P
Sbjct: 50 PISPGVIP 57


>sp|APGM_SACI6|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Saccharolobus islandicus (strain M.16.4 /

Query: 3 PVSPGVQP 10
P+SPGV P
Sbjct: 50 PISPGVIP 57


>sp|APGM_SACI4|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Saccharolobus islandicus (strain M.14.25

Query: 3 PVSPGVQP 10
P+SPGV P
Sbjct: 50 PISPGVIP 57


>sp|APGM_SACI3|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Saccharolobus islandicus (strain M.16.27)

Query: 3 PVSPGVQP 10
P+SPGV P
Sbjct: 50 PISPGVIP 57


>sp|APGM_PYRIL|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrobaculum islandicum (strain DSM 4184

Query: 3 PVSPGVQP 10
P++PGV+P
Sbjct: 45 PIAPGVRP 52


>sp|APGM_SACS2|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Saccharolobus solfataricus (strain ATCC

Query: 3 PVSPGVQP 10
P+SPG+ P
Sbjct: 50 PISPGIIP 57


>sp|APGM_PYRNV|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 PVSPGVQP 10
P+SPGV+P
Sbjct: 45 PISPGVRP 52


>sp|APGM_PYRAE|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 PVSPGVQP 10
P+SPG++P
Sbjct: 45 PISPGIRP 52


>sp|APGM_PYRCJ|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrobaculum calidifontis (strain DSM

Query: 3 PVSPGVQP 10
P+SPGV+P
Sbjct: 45 PISPGVRP 52


>sp|APGM_PYRAR|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 PVSPGVQP 10
P++PGV+P
Sbjct: 45 PIAPGVRP 52


>sp|PRIS_HYPBU|DNA primase small subunit PriS|Hyperthermus butylicus (strain DSM 5456

Query: 1 PVPVSPGVQ 9
P+P+ P VQ
Sbjct: 219 PIPIPPNVQ 227


>sp|PFDA1_METJA|PREFOLDIN subunit alpha 1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VPVSPGV 8
+PV PGV
Sbjct: 57 IPVGPGV 63


>sp|SYV_THEVO|VALINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 VPVSPGVQP 10
+PV P +QP
Sbjct: 421 LPVDPRLQP 429


>sp|LPLAC_THEAC|LIPOATE-PROTEIN ligase A subunit 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 VSPGVQP 10
++PGV+P
Sbjct: 78 ITPGVEP 84


>sp|RL1_PICTO|LARGE ribosomal subunit protein uL1|Picrophilus torridus (strain ATCC

Query: 1 PVPVSPGVQP 10
P PV PG P
Sbjct: 125 PRPVPPGQDP 134


>sp|APGM_SULTO|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 PVSPGV 8
P+SPGV
Sbjct: 50 PISPGV 55


>sp|PYRH_AERPE|URIDYLATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 2 VPVSPGVQP 10
+PVS G QP
Sbjct: 108 IPVSGGFQP 116


>sp|RL1_THEAC|LARGE ribosomal subunit protein uL1|Thermoplasma acidophilum (strain ATCC

Query: 1 PVPVSPGVQP 10
P P+ PG P
Sbjct: 130 PRPIPPGQDP 139


>sp|APGM_METKA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanopyrus kandleri (strain AV19 /

Query: 3 PVSPGVQP 10
P+ PGV+P
Sbjct: 54 PIRPGVRP 61


>sp|PPSA_AERPE|PHOSPHOENOLPYRUVATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 2 VPVSPGV 8
VP SPGV
Sbjct: 379 VPASPGV 385




196|Sequence|976|985|PGVQPLYPIP

>sp|PYRC_ARCFU|DIHYDROOROTASE fulgidus (strain ATCC 49558

Query: 1 PGVQPLYPI 9
PGV+ +YP+
Sbjct: 294 PGVETMYPL 302


>sp|RPO3_METTH|DNA-DIRECTED RNA polymerase subunit Rpo3|Methanothermobacter thermautotrophicus

Query: 1 PGVQPLYP 8
P V+P+YP
Sbjct: 116 PAVKPVYP 123


>sp|SYT_THEKO|THREONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 GVQPLYPI 9
G++P+YP+
Sbjct: 500 GIKPMYPL 507


>sp|RPO3_AERPE|DNA-DIRECTED RNA polymerase subunit Rpo3|Aeropyrum pernix (strain ATCC 700893

Query: 1 PGVQPLYP 8
P V+P+YP
Sbjct: 128 PQVKPVYP 135


>sp|GLPA1_HALVD|ANAEROBIC glycerol-3-phosphate dehydrogenase subunit A1|Haloferax volcanii

Query: 2 GVQPLYPIP 10
GV+PLY P
Sbjct: 316 GVRPLYEPP 324


>sp|TRPD_THEKO|ANTHRANILATE phosphoribosyltransferase|Thermococcus kodakarensis (strain ATCC

Query: 2 GVQPLYPIP 10
G++P+ P+P
Sbjct: 245 GIEPVKPLP 253


>sp|SYY2_PYRAE|TYROSINE--TRNA ligase 2|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 GVQPLYPI 9
G +PL+PI
Sbjct: 28 GFEPLWPI 35


>sp|IF2P_THEKO|PROBABLE translation initiation factor IF-2|Thermococcus kodakarensis (strain

Query: 1 PGVQPLYP 8
PGV LYP
Sbjct: 1014 PGVIRLYP 1021


>sp|LEU3_METTH|3-ISOPROPYLMALATE dehydrogenase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 PGVQPLYP 8
PGV LYP
Sbjct: 99 PGVPCLYP 106


>sp|SYW_PYRAE|TRYPTOPHAN--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 VQPLYPI 9
++PLYPI
Sbjct: 158 IKPLYPI 164


>sp|IF2P_PYRAB|PROBABLE translation initiation factor IF-2|Pyrococcus abyssi (strain GE5 /

Query: 1 PGVQPLYP 8
PGV LYP
Sbjct: 862 PGVIRLYP 869


>sp|IF2P_PYRHO|PROBABLE translation initiation factor IF-2|Pyrococcus horikoshii (strain

Query: 1 PGVQPLYP 8
PGV LYP
Sbjct: 914 PGVIKLYP 921


>sp|IF2P_PYRFU|PROBABLE translation initiation factor IF-2|Pyrococcus furiosus (strain ATCC

Query: 1 PGVQPLYP 8
PGV LYP
Sbjct: 854 PGVIRLYP 861


>sp|Y1136_SULTO|PUTATIVE ABC transporter ATP-binding protein|Sulfurisphaera tokodaii (strain

Query: 2 GVQPLYPIP 10
G++PL P P
Sbjct: 237 GLEPLRPSP 245


>sp|SYW_PYRCJ|TRYPTOPHAN--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 VQPLYPI 9
++PLYPI
Sbjct: 158 IKPLYPI 164


>sp|IF2P_THEON|PROBABLE translation initiation factor IF-2|Thermococcus onnurineus (strain

Query: 1 PGVQPLYP 8
PGV LYP
Sbjct: 467 PGVIRLYP 474


>sp|PYRB_METLZ|ASPARTATE carbamoyltransferase catalytic subunit|Methanocorpusculum labreanum

Query: 1 PGVQPLYPIP 10
PG+ L+P+P
Sbjct: 257 PGMIVLHPLP 266


>sp|THIL_PYRCJ|THIAMINE-MONOPHOSPHATE kinase|Pyrobaculum calidifontis (strain DSM 21063

Query: 4 QPLYPIP 10
+PL+P+P
Sbjct: 178 KPLWPLP 184


>sp|SYT_THEON|THREONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 2 GVQPLYPI 9
G++P++P+
Sbjct: 501 GIKPMFPL 508


>sp|SYK_ARCFU|LYSINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 QPLYPIP 10
+P YP+P
Sbjct: 253 EPPYPVP 259




197|Sequence|981|990|LYPIPMTPMP

>sp|UPPS_METMA|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Methanosarcina mazei

Query: 1 LYPIPMTPMP 10
LYP P P+P
Sbjct: 192 LYPAPGVPVP 201


>sp|TRUA_METMJ|TRNA pseudouridine synthase A|Methanoculleus marisnigri (strain ATCC

Query: 2 YPIPMTPMP 10
Y IP TP+P
Sbjct: 224 YGIPFTPLP 232


>sp|RL1_METBU|LARGE ribosomal subunit protein uL1|Methanococcoides burtonii (strain DSM

Query: 3 PIPMTP 8
P+P+TP
Sbjct: 131 PVPLTP 136


>sp|BIOB_NITMS|BIOTIN synthase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 LYPIPMTPM 9
L P+P TP+
Sbjct: 238 LVPVPGTPL 246


>sp|RPIA_HALMA|RIBOSE-5-PHOSPHATE isomerase A|Haloarcula marismortui (strain ATCC 43049

Query: 2 YPIPMTPMP 10
YP+P+ +P
Sbjct: 131 YPVPVEVLP 139


>sp|KDGK_SACS2|2-DEHYDRO-3-DEOXYGLUCONOKINASE/2-DEHYDRO-3-DEOXYGALACTONOKINASE solfataricus (strain ATCC 35092

Query: 2 YPIPM 6
YPIPM
Sbjct: 96 YPIPM 100


>sp|TRF2_THEAC|TRICORN protease-interacting factor F2|Thermoplasma acidophilum (strain

Query: 2 YPIPMTPM 9
+PIP+T M
Sbjct: 452 WPIPLTVM 459


>sp|FWDF_METJA|POLYFERREDOXIN protein FwdF|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YPIPMTPMP 10
YP P P P
Sbjct: 177 YPTPSNPKP 185


>sp|ACSA_METTP|ACETYL-COENZYME A synthetase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 PIPMTP 8
P+PMTP
Sbjct: 438 PLPMTP 443


>sp|Y088_METJA|UNCHARACTERIZED protein MJ0088|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 IPMTPMP 10
+P TP+P
Sbjct: 92 LPFTPLP 98


>sp|SYK_SACS2|LYSINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 YPIPMTPM 9
YPI TP+
Sbjct: 377 YPIETTPL 384




198|Sequence|986|995|MTPMPVNQAK

>sp|RTCB_METKA|TRNA-SPLICING ligase RtcB|Methanopyrus kandleri (strain AV19 /

Query: 2 TPMPVN--QAK 10
TP+P+N QAK
Sbjct: 381 TPLPINLTQAK 391


>sp|Y1137_METTH|UNCHARACTERIZED protein MTH_1137|Methanothermobacter thermautotrophicus (strain

Query: 1 MTPMPVNQAK 10
+TP+P+ +A+
Sbjct: 342 LTPVPIQKAQ 351


>sp|KCY_HALMA|CYTIDYLATE kinase|Haloarcula marismortui (strain ATCC 43049

Query: 1 MTPMPVNQA 9
MTP+ +N+A
Sbjct: 44 MTPLELNKA 52


>sp|RTCB_PYRAB|TRNA-SPLICING ligase RtcB|Pyrococcus abyssi (strain GE5 /

Query: 2 TPMPVN 7
TP+P+N
Sbjct: 375 TPLPIN 380


>sp|RTCB_METJA|TRNA-SPLICING ligase RtcB|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 TPMPVN 7
TP+P+N
Sbjct: 380 TPLPIN 385


>sp|EPDA_METMP|MINOR structural pilin EpdA|Methanococcus maripaludis (strain DSM 14266

Query: 2 TPMPVN 7
TP+PVN
Sbjct: 96 TPVPVN 101


>sp|DAPA_NATPD|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 PMPVNQA 9
P+P+N+A
Sbjct: 253 PIPINEA 259


>sp|RRP42_METTH|EXOSOME complex component Rrp42|Methanothermobacter thermautotrophicus

Query: 1 MTPMPVNQ 8
M P+PVN+
Sbjct: 184 MQPLPVNR 191




199|Sequence|991|1000|VNQAKTYRAV

>sp|NIFH1_METTL|NITROGENASE iron protein 1|Methanothermococcus thermolithotrophicus

Query: 2 NQAKTYRAV 10
NQAK YR +
Sbjct: 243 NQAKEYRTL 251


>sp|RECJ2_METJA|EXONUCLEASE RecJ2|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VNQAKTYRAV 10
VN+A+ YR V
Sbjct: 179 VNEAREYRYV 188


>sp|ILVC_METMJ|KETOL-ACID reductoisomerase (NADP(+))|Methanoculleus marisnigri (strain ATCC

Query: 2 NQAKTYRA 9
NQA YRA
Sbjct: 84 NQAAVYRA 91


>sp|HTPX_METJA|PROTEASE HtpX homolog|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VNQAKTY 7
+NQ KTY
Sbjct: 2 INQIKTY 8


>sp|CG121_METJA|REGULATORY protein Cgi121|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VNQAKTYRAV 10
+NQAKT + +
Sbjct: 40 INQAKTKKPI 49


>sp|AATC_METTP|A-TYPE ATP synthase subunit C|Methanothrix thermoacetophila (strain DSM

Query: 2 NQAKTYRAV 10
N AKTYR +
Sbjct: 79 NLAKTYRKL 87




200|Sequence|996|1005|TYRAVPNMPQ

>sp|UPPS_PYRHO|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Pyrococcus

Query: 2 YRAVPNMP 9
Y VPNMP
Sbjct: 199 YLYVPNMP 206


>sp|UPPS_PYRAB|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Pyrococcus abyssi

Query: 2 YRAVPNMP 9
Y VPNMP
Sbjct: 199 YLYVPNMP 206


>sp|UPPS_PYRFU|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Pyrococcus furiosus

Query: 2 YRAVPNMP 9
Y VPNMP
Sbjct: 199 YLYVPNMP 206


>sp|Y886_METJA|PUTATIVE molybdopterin biosynthesis protein MJ0886|Methanocaldococcus

Query: 2 YRAVPNM 8
YRAVP M
Sbjct: 133 YRAVPPM 139


>sp|TKTC_METJA|PUTATIVE transketolase C-terminal section|Methanocaldococcus jannaschii

Query: 3 RAVPNM 8
RA+PNM
Sbjct: 133 RAIPNM 138


>sp|TRM5B_PYRAB|TRNA (guanine(37)-N(1))-methyltransferase Trm5b|Pyrococcus abyssi

Query: 1 TYRAVPNMPQ 10
+YR + N+PQ
Sbjct: 65 SYREIVNVPQ 74




201|Sequence|1001|1010|PNMPQQRQDQ

>sp|KPRS_PYRAE|RIBOSE-PHOSPHATE pyrophosphokinase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PNMPQQRQDQ 10
P MP RQD+
Sbjct: 82 PYMPYARQDR 91


>sp|SERA_METJA|D-3-PHOSPHOGLYCERATE dehydrogenase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PNMPQQR 7
PN+PQ++
Sbjct: 314 PNIPQEK 320


>sp|SLAA_METS5|S-LAYER protein A|Metallosphaera sedula (strain ATCC 51363

Query: 1 PNMPQQRQ 8
PN+PQ Q
Sbjct: 60 PNVPQSAQ 67




202|Sequence|1006|1015|QRQDQHHQSA

***** No hits found ******


203|Sequence|1011|1020|HHQSAMMHPA

>sp|RFCL_HALWD|REPLICATION factor C large subunit|Haloquadratum walsbyi (strain DSM 16790

Query: 1 HHQSAMMHPA 10
HH+S ++H A
Sbjct: 36 HHESVVLHGA 45


>sp|FPRA_METTH|COENZYME F420H(2) oxidase|Methanothermobacter thermautotrophicus (strain

Query: 1 HHQSAMMHPA 10
HH +AMM A
Sbjct: 267 HHSTAMMAHA 276


>sp|RFCL_HALLT|REPLICATION factor C large subunit|Halorubrum lacusprofundi (strain ATCC

Query: 1 HHQSAMMH 8
HH++ ++H
Sbjct: 36 HHEAVVLH 43




204|Sequence|1016|1025|MMHPASAAGP

>sp|AMTAB_METTH|PROBABLE threonylcarbamoyladenosine tRNA

Query: 1 MMHPAS 6
MMHPAS
Sbjct: 227 MMHPAS 232


>sp|ACDD2_METAC|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 1 MMHPASAA 8
MMHP S A
Sbjct: 401 MMHPTSVA 408


>sp|ACDD_METMA|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina mazei

Query: 1 MMHPASAA 8
MMHP S A
Sbjct: 401 MMHPTSVA 408


>sp|ACDD1_METAC|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 1 MMHPASAA 8
MMHP S A
Sbjct: 401 MMHPTSVA 408


>sp|ACDD2_METTE|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 1 MMHPASAA 8
MMHP S A
Sbjct: 402 MMHPTSVA 409


>sp|ACDD1_METTE|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 1 MMHPASAA 8
MMHP S A
Sbjct: 401 MMHPTSVA 408


>sp|CARA_METAC|CARBAMOYL phosphate synthase small chain|Methanosarcina acetivorans (strain

Query: 3 HPASAAGP 10
HP + AGP
Sbjct: 342 HPEAQAGP 349


>sp|CARA_METMA|CARBAMOYL phosphate synthase small chain|Methanosarcina mazei (strain ATCC

Query: 3 HPASAAGP 10
HP + AGP
Sbjct: 342 HPEAQAGP 349


>sp|DNAG_HALSA|DNA primase DnaG|Halobacterium salinarum (strain ATCC 700922

Query: 4 PASAAGP 10
PASAA P
Sbjct: 262 PASAAAP 268


>sp|DNAG_HALS3|DNA primase DnaG|Halobacterium salinarum (strain ATCC 29341

Query: 4 PASAAGP 10
PASAA P
Sbjct: 262 PASAAAP 268




205|Sequence|1021|1030|SAAGPPIAAT

***** No hits found ******


206|Sequence|1026|1035|PIAATPPAYS

>sp|TFE_NATPD|TRANSCRIPTION factor E|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PIAATPP 7
P+AA PP
Sbjct: 26 PVAAAPP 32


>sp|TFE_HALSA|TRANSCRIPTION factor E|Halobacterium salinarum (strain ATCC 700922

Query: 1 PIAATPP 7
P+AA PP
Sbjct: 26 PVAAAPP 32


>sp|TFE_HALMA|TRANSCRIPTION factor E|Haloarcula marismortui (strain ATCC 43049

Query: 1 PIAATPP 7
P+AA PP
Sbjct: 26 PVAAAPP 32


>sp|MRE11_NANEQ|DNA double-strand break repair protein|Nanoarchaeum equitans (strain

Query: 2 IAATPPAYS 10
I TPP YS
Sbjct: 214 IIVTPPPYS 222


>sp|RS15_METAR|SMALL ribosomal subunit protein uS15|Methanocella arvoryzae (strain DSM

Query: 1 PIAATPPAY 9
P+ TPPA+
Sbjct: 17 PVRKTPPAW 25


>sp|KAE1_STAMF|TRNA N6-adenosine threonylcarbamoyltransferase|Staphylothermus marinus

Query: 3 AATPPAYS 10
A TPP YS
Sbjct: 287 AGTPPEYS 294


>sp|RS15_HALWD|SMALL ribosomal subunit protein uS15|Haloquadratum walsbyi (strain DSM

Query: 1 PIAATPPAYS 10
P+A PP +S
Sbjct: 17 PVADDPPEWS 26


>sp|TFE_HALWD|TRANSCRIPTION factor E|Haloquadratum walsbyi (strain DSM 16790

Query: 1 PIAATPP 7
P+AA PP
Sbjct: 26 PVAAAPP 32


>sp|COOS_ARCFU|CARBON monoxide dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PIAATPPAY 9
P+A T P Y
Sbjct: 539 PVAVTAPEY 547


>sp|COOS2_METAC|CARBON monoxide dehydrogenase 2|Methanosarcina acetivorans (strain ATCC

Query: 1 PIAATPPAY 9
PIAA P Y
Sbjct: 550 PIAAAAPEY 558




207|Sequence|1031|1040|PPAYSTQYVA

>sp|CCA_METTH|CCA-ADDING enzyme|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 PPAYST 6
PP+YST
Sbjct: 267 PPSYST 272


>sp|RNP4_METB6|RIBONUCLEASE P protein component 4|Methanoregula boonei (strain DSM 21154

Query: 2 PAYSTQYVA 10
P YS +YVA
Sbjct: 33 PGYSDRYVA 41


>sp|Y646_METJA|UPF0305 protein MJ0646|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PPAYSTQYV 9
PP Y YV
Sbjct: 37 PPQYKNHYV 45


>sp|RL24E_PYRCJ|LARGE ribosomal subunit protein eL24|Pyrobaculum calidifontis (strain

Query: 1 PPAYSTQYV 9
PP Y YV
Sbjct: 14 PPGYGIMYV 22


>sp|RL24E_PYRNV|LARGE ribosomal subunit protein eL24|Pyrobaculum neutrophilum (strain

Query: 1 PPAYSTQYV 9
PP Y YV
Sbjct: 14 PPGYGIMYV 22


>sp|RL24E_CALMQ|LARGE ribosomal subunit protein eL24|Caldivirga maquilingensis (strain

Query: 1 PPAYSTQYV 9
PP Y YV
Sbjct: 14 PPGYGIMYV 22


>sp|Y584_METJA|UPF0718 protein MJ0584|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PPAYSTQYVA 10
PP+Y YV
Sbjct: 265 PPSYIATYVG 274




208|Sequence|1036|1045|TQYVAYSPQQ

>sp|GATE_PYRCJ|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Pyrobaculum calidifontis (strain DSM

Query: 1 TQYVAYSPQQ 10
T+ ++YSPQQ
Sbjct: 187 TEPMSYSPQQ 196


>sp|GATE_PYRAE|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Pyrobaculum aerophilum (strain ATCC

Query: 1 TQYVAYSPQQ 10
T+ +AY+PQ+
Sbjct: 187 TEPMAYTPQE 196


>sp|DNAG_METPE|DNA primase DnaG|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 3 YVAYSPQ 9
YVA+SP+
Sbjct: 239 YVAFSPR 245


>sp|DNAG_METMJ|DNA primase DnaG|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 YVAYSPQ 9
+VAYSP+
Sbjct: 239 FVAYSPR 245


>sp|Y1893_SACS2|PUTATIVE ABC transporter ATP-binding protein|Saccharolobus solfataricus

Query: 2 QYVAYSPQ 9
+Y+AY PQ
Sbjct: 360 KYLAYLPQ 367


>sp|GCSPA_METS5|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Metallosphaera

Query: 3 YVAYSPQQ 10
Y AY+P Q
Sbjct: 98 YTAYTPYQ 105


>sp|VORA_METTM|KETOISOVALERATE oxidoreductase subunit VorA|Methanothermobacter marburgensis

Query: 3 YVAYSPQQ 10
Y AY P+Q
Sbjct: 330 YPAYGPEQ 337


>sp|VORA_METTH|KETOISOVALERATE oxidoreductase subunit VorA|Methanothermobacter thermautotrophicus

Query: 3 YVAYSPQQ 10
Y AY P+Q
Sbjct: 330 YPAYGPEQ 337


>sp|Y1071_METJA|UNCHARACTERIZED protein MJ1071|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 QYVAYSPQ 9
+Y++Y PQ
Sbjct: 120 EYISYIPQ 127


>sp|GCSPA_SULTO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Sulfurisphaera

Query: 3 YVAYSPQQ 10
Y AY+P Q
Sbjct: 98 YTAYTPYQ 105


>sp|TRMBR_THELN|HTH-TYPE sugar sensing transcriptional regulator|Thermococcus litoralis

Query: 3 YVAYSPQ 9
Y AYSP+
Sbjct: 72 YAAYSPR 78


>sp|TRMBR_PYRFU|HTH-TYPE sugar sensing transcriptional regulator|Pyrococcus furiosus

Query: 3 YVAYSPQ 9
Y AYSP+
Sbjct: 72 YAAYSPR 78




209|Sequence|1041|1050|YSPQQFPNQP

>sp|TBP_THEVO|TATA-BOX-BINDING protein|Thermoplasma volcanium (strain ATCC 51530

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 36 YEPEQFP 42


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 129 YEPEQFP 135


>sp|TBP_THEAC|TATA-BOX-BINDING protein|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 36 YEPEQFP 42


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 129 YEPEQFP 135


>sp|TBP_PYRAB|TATA-BOX-BINDING protein|Pyrococcus abyssi (strain GE5 /

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 129 YEPEQFP 135


Query: 1 YSPQQFP 7
Y+P++FP
Sbjct: 38 YNPEEFP 44


>sp|TBP_PICTO|TATA-BOX-BINDING protein|Picrophilus torridus (strain ATCC 700027

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 36 YEPEQFP 42


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 129 YEPEQFP 135


>sp|TBP_METTP|TATA-BOX-BINDING protein|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


>sp|TBP_METTH|TATA-BOX-BINDING protein|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 126 YEPEQFP 132


>sp|TBP_METST|TATA-BOX-BINDING protein|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 126 YEPEQFP 132


>sp|TBP_METS3|TATA-BOX-BINDING protein|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 126 YEPEQFP 132


>sp|TBP_METJA|TATA-BOX-BINDING protein|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 37 YEPEQFP 43


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


>sp|TBP_HALMA|TATA-BOX-BINDING protein|Haloarcula marismortui (strain ATCC 43049

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 130 YEPEQFP 136


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 37 YDPEQFP 43


>sp|TBP_ARCFU|TATA-BOX-BINDING protein|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 35 YKPKQFP 41


>sp|TBPC_HALSA|TATA-BOX-BINDING protein C|Halobacterium salinarum (strain ATCC 700922

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


>sp|TBP2_HALVD|TATA-BOX-BINDING protein 2|Haloferax volcanii (strain ATCC 29605

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 130 YEPEQFP 136


>sp|TBP1_METMA|TATA-BOX-BINDING protein 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


>sp|TBP1_METAC|TATA-BOX-BINDING protein 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


>sp|TBP_METKA|TATA-BOX-BINDING protein|Methanopyrus kandleri (strain AV19 /

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 29 YEPEQFP 35


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 127 YEPEQFP 133


>sp|TBP_META3|TATA-BOX-BINDING protein|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 34 YEPEQFP 40


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 124 YEPEQFP 130


>sp|TBPF_HALSA|TATA-BOX-BINDING protein F|Halobacterium salinarum (strain ATCC 700922

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 130 YEPEQFP 136


Query: 1 YSPQQFP 7
Y+P+ FP
Sbjct: 37 YNPEDFP 43


>sp|TBP2_METMA|TATA-BOX-BINDING protein 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


>sp|TBP_THESM|TATA-BOX-BINDING protein|Thermococcus sibiricus (strain DSM 12597

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 126 YEPEQFP 132


Query: 1 YSPQQFP 7
Y+P++FP
Sbjct: 35 YNPEEFP 41


>sp|TBP_METMP|TATA-BOX-BINDING protein|Methanococcus maripaludis (strain DSM 14266

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 34 YEPEQFP 40


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 124 YEPEQFP 130


>sp|TBP_PYRHO|TATA-BOX-BINDING protein|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 129 YEPEQFP 135


Query: 1 YSPQQFP 7
Y+P++FP
Sbjct: 38 YNPEEFP 44


>sp|TBP_THEKO|TATA-BOX-BINDING protein|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 129 YEPEQFP 135


Query: 1 YSPQQFP 7
Y+P++FP
Sbjct: 38 YNPEEFP 44


>sp|TBP_METTL|TATA-BOX-BINDING protein|Methanothermococcus thermolithotrophicus

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 34 YEPEQFP 40


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 124 YEPEQFP 130


>sp|TBP_METM6|TATA-BOX-BINDING protein|Methanococcus maripaludis (strain C6 /

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 34 YEPEQFP 40


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 124 YEPEQFP 130


>sp|TBP_METVS|TATA-BOX-BINDING protein|Methanococcus vannielii (strain ATCC 35089

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 34 YEPEQFP 40


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 124 YEPEQFP 130


>sp|TBPE_HALSA|TATA-BOX-BINDING protein E|Halobacterium salinarum (strain ATCC 700922

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 130 YEPEQFP 136


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 37 YDPEQFP 43


>sp|TBP_NATPD|TATA-BOX-BINDING protein|Natronomonas pharaonis (strain ATCC 35678

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 130 YEPEQFP 136


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 37 YDPEQFP 43


>sp|TBP_METM7|TATA-BOX-BINDING protein|Methanococcus maripaludis (strain C7 /

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 34 YEPEQFP 40


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 124 YEPEQFP 130


>sp|TBP_PYRWO|TATA-BOX-BINDING protein|Pyrococcus woesei

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 129 YEPEQFP 135


Query: 1 YSPQQFP 7
Y+P++FP
Sbjct: 38 YNPEEFP 44


>sp|TBP_PYRFU|TATA-BOX-BINDING protein|Pyrococcus furiosus (strain ATCC 43587

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 129 YEPEQFP 135


Query: 1 YSPQQFP 7
Y+P++FP
Sbjct: 38 YNPEEFP 44


>sp|TBP_THECE|TATA-BOX-BINDING protein|Thermococcus celer

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 126 YEPEQFP 132


Query: 1 YSPQQFP 7
Y+P++FP
Sbjct: 35 YNPEEFP 41


>sp|TBP_PYRNV|TATA-BOX-BINDING protein|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


Query: 1 YSPQQFP 7
Y+P QFP
Sbjct: 37 YNPDQFP 43


>sp|TBP_PYRIL|TATA-BOX-BINDING protein|Pyrobaculum islandicum (strain DSM 4184

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


Query: 1 YSPQQFP 7
Y+P QFP
Sbjct: 37 YNPDQFP 43


>sp|DNAG_STAMF|DNA primase DnaG|Staphylothermus marinus (strain ATCC 43588

Query: 1 YSPQQFPNQP 10
Y P+Q P P
Sbjct: 151 YGPEQLPAGP 160


>sp|TBP_THEON|TATA-BOX-BINDING protein|Thermococcus onnurineus (strain NA1)

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 129 YEPEQFP 135


Query: 1 YSPQQFP 7
Y+P++FP
Sbjct: 38 YNPEEFP 44


>sp|EF2_THEON|ELONGATION factor 2|Thermococcus onnurineus (strain NA1)

Query: 1 YSPQQFPNQ 9
Y+P++F NQ
Sbjct: 182 YAPEEFKNQ 190


>sp|TBP_PYRAE|TATA-BOX-BINDING protein|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


Query: 1 YSPQQFP 7
Y+P QFP
Sbjct: 37 YNPDQFP 43


>sp|TBP1_HALVD|TATA-BOX-BINDING protein 1|Haloferax volcanii (strain ATCC 29605

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 130 YEPEQFP 136


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 37 YDPEQFP 43


>sp|TBP_AERPE|TATA-BOX-BINDING protein|Aeropyrum pernix (strain ATCC 700893

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 143 YEPEQFP 149


Query: 1 YSPQQFP 7
Y+P QFP
Sbjct: 52 YNPDQFP 58


>sp|EF2_THEAC|ELONGATION factor 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 YSPQQFPNQ 9
Y+PQQF +
Sbjct: 182 YAPQQFTKE 190


>sp|TBP_SACS2|TATA-BOX-BINDING protein|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 132 YEPEQFP 138


Query: 1 YSPQQFP 7
Y P QFP
Sbjct: 41 YDPDQFP 47


>sp|TBP_SACSH|TATA-BOX-BINDING protein|Saccharolobus shibatae (strain ATCC 51178

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 132 YEPEQFP 138


Query: 1 YSPQQFP 7
Y P QFP
Sbjct: 41 YDPDQFP 47


>sp|TBPD_HALSA|TATA-BOX-BINDING protein D|Halobacterium salinarum (strain ATCC 700922

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 130 YEPEQFP 136


>sp|TBP_SULAC|TATA-BOX-BINDING protein|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 132 YEPEQFP 138


Query: 1 YSPQQFP 7
Y P QFP
Sbjct: 41 YDPDQFP 47


>sp|TBPB_HALSA|TATA-BOX-BINDING protein B|Halobacterium salinarum (strain ATCC 700922

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 130 YEPEQFP 136


Query: 1 YSPQQFP 7
Y+P+ FP
Sbjct: 37 YNPEDFP 43


>sp|DGGGP_METBF|DIGERANYLGERANYLGLYCERYL phosphate synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 YSPQQFP 7
YSP +FP
Sbjct: 43 YSPGEFP 49


>sp|TBP_SULTO|TATA-BOX-BINDING protein|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 133 YEPEQFP 139


Query: 1 YSPQQFP 7
Y P QFP
Sbjct: 42 YDPDQFP 48


>sp|TBP_PYRCJ|TATA-BOX-BINDING protein|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 128 YEPEQFP 134


Query: 1 YSPQQFP 7
Y+P QFP
Sbjct: 37 YNPDQFP 43


>sp|TBP_PYROC|TATA-BOX-BINDING protein|Pyrodictium occultum

Query: 1 YSPQQFP 7
Y+P+QFP
Sbjct: 50 YNPEQFP 56


Query: 1 YSPQQFP 7
Y P+QFP
Sbjct: 141 YEPEQFP 147


>sp|ASSY_METBF|ARGININOSUCCINATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 2 SPQQFPNQP 10
SP++ P QP
Sbjct: 204 SPEKTPEQP 212


>sp|NNRD_NATMM|ADP-DEPENDENT (S)-NAD(P)H-hydrate dehydratase|Natrialba magadii (strain ATCC

Query: 5 QFPNQP 10
++PNQP
Sbjct: 30 EYPNQP 35


>sp|NNRD_HALTV|ADP-DEPENDENT (S)-NAD(P)H-hydrate dehydratase|Haloterrigena turkmenica (strain

Query: 5 QFPNQP 10
++PNQP
Sbjct: 29 EYPNQP 34


>sp|AAT_METJA|PROBABLE aspartate aminotransferase|Methanocaldococcus jannaschii (strain

Query: 1 YSPQQFPNQ 9
YSP QF ++
Sbjct: 206 YSPMQFTDR 214


>sp|AATC_THEON|A-TYPE ATP synthase subunit C|Thermococcus onnurineus (strain NA1)

Query: 1 YSPQQFPN 8
Y+P +PN
Sbjct: 32 YTPYSYPN 39


>sp|AATC_THEKO|A-TYPE ATP synthase subunit C|Thermococcus kodakarensis (strain ATCC

Query: 1 YSPQQFPN 8
Y+P +PN
Sbjct: 31 YTPYSYPN 38


>sp|AATC_THEGJ|A-TYPE ATP synthase subunit C|Thermococcus gammatolerans (strain DSM

Query: 1 YSPQQFPN 8
Y+P +PN
Sbjct: 32 YTPYSYPN 39


>sp|AATC_PYRHO|A-TYPE ATP synthase subunit C|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 YSPQQFPN 8
Y+P +PN
Sbjct: 32 YTPYSYPN 39


>sp|AATC_PYRFU|A-TYPE ATP synthase subunit C|Pyrococcus furiosus (strain ATCC 43587

Query: 1 YSPQQFPN 8
Y+P +PN
Sbjct: 32 YTPYSYPN 39


>sp|AATC_PYRAB|A-TYPE ATP synthase subunit C|Pyrococcus abyssi (strain GE5 /

Query: 1 YSPQQFPN 8
Y+P +PN
Sbjct: 32 YTPYSYPN 39


>sp|AATC_DESSY|A-TYPE ATP synthase subunit C|Desulfurococcus sp. (strain SY)

Query: 1 YSPQQFPN 8
Y+P +PN
Sbjct: 30 YTPYSYPN 37


>sp|Y787_METJA|UNCHARACTERIZED protein MJ0787|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YSPQQFPNQ 9
Y P +FP +
Sbjct: 139 YGPMRFPKE 147


>sp|ASSY_METBA|ARGININOSUCCINATE synthase|Methanosarcina barkeri

Query: 2 SPQQFPNQP 10
SP++ P QP
Sbjct: 204 SPEKAPEQP 212


>sp|Y453_METAC|UNCHARACTERIZED glycosyltransferase MA_0453|Methanosarcina acetivorans (strain ATCC

Query: 3 PQQFPNQP 10
P+QFP P
Sbjct: 249 PEQFPEIP 256




210|Sequence|1046|1055|FPNQPLVQHV

>sp|IF2P_THEPD|PROBABLE translation initiation factor IF-2|Thermofilum pendens (strain DSM

Query: 1 FPNQPLVQHV 10
FPN P V+ V
Sbjct: 148 FPNTPFVESV 157


>sp|CS3HD_METJA|CRISPR-ASSOCIATED endonuclease Cas3-HD|Methanocaldococcus jannaschii (strain ATCC

Query: 1 FPNQPLVQHV 10
F NQ L+ HV
Sbjct: 12 FKNQSLIDHV 21


>sp|GRPE_METS3|PROTEIN GrpE|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 FPNQPLVQHV 10
F N+PL++++
Sbjct: 80 FANEPLIKNI 89


>sp|Y1334_METJA|PUTATIVE UTP--glucose-1-phosphate uridylyltransferase|Methanocaldococcus

Query: 3 NQPLVQHV 10
N+P+VQ+V
Sbjct: 32 NKPIVQYV 39


>sp|Y1266_METJA|UNCHARACTERIZED protein MJ1266|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 NQPLVQHV 10
N PL++HV
Sbjct: 259 NSPLLKHV 266


>sp|NADA_PYRHO|QUINOLINATE synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 FPNQPLVQHV 10
+PN P+V +V
Sbjct: 101 YPNAPVVLYV 110


>sp|DPCKG_IGNH4|GTP-DEPENDENT dephospho-CoA kinase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 PNQPLV 7
PNQPL+
Sbjct: 164 PNQPLL 169


>sp|TFE_METJA|TRANSCRIPTION factor E|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 NQPLVQHV 10
N PLVQ V
Sbjct: 3 NDPLVQEV 10


>sp|NADA_PYRAB|QUINOLINATE synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 FPNQPLVQHV 10
+PN P+V +V
Sbjct: 101 YPNAPVVLYV 110


>sp|SYFB_SULTO|PHENYLALANINE--TRNA ligase beta subunit|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 NQPLVQH 9
N PL+QH
Sbjct: 264 NSPLLQH 270


>sp|Y4618_METAC|UPF0313 protein MA_4618|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 FPNQPLV 7
FPN P+V
Sbjct: 249 FPNVPIV 255


>sp|NADA_PYRFU|QUINOLINATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 FPNQPLVQHV 10
+PN P+V +V
Sbjct: 105 YPNAPVVLYV 114


>sp|NADA_THEGJ|QUINOLINATE synthase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 FPNQPLVQHV 10
+PN P+V +V
Sbjct: 104 YPNAPVVLYV 113


>sp|NADA_SULTO|QUINOLINATE synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 FPNQPLVQHV 10
+PN P+V ++
Sbjct: 101 YPNAPVVLYI 110


>sp|ORNAT_THEKO|ORNITHINE aminotransferase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 FPNQPLVQHV 10
FP P V H+
Sbjct: 173 FPTMPGVTHI 182


>sp|NADA_SACS2|QUINOLINATE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 FPNQPLVQHV 10
+PN P+V ++
Sbjct: 105 YPNAPVVLYI 114




211|Sequence|1051|1060|LVQHVPHYQS

>sp|UPPS_THEKO|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Thermococcus

Query: 1 LVQHVPH 7
LV H+PH
Sbjct: 5 LVSHIPH 11


>sp|Y694_METJA|UNCHARACTERIZED NOP5 family protein MJ0694|Methanocaldococcus jannaschii (strain

Query: 1 LVQHVPHYQ 9
L+Q PH+Q
Sbjct: 310 LIQGSPHWQ 318


>sp|SYM_AERPE|METHIONINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 VQHVPH 7
V HVPH
Sbjct: 13 VNHVPH 18


>sp|Y133_METJA|UNCHARACTERIZED protein MJ0133|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 HVPHY 8
H PHY
Sbjct: 66 HAPHY 70


>sp|RIFK_METLZ|RIBOFLAVIN kinase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 5 VPHYQ 9
+PHYQ
Sbjct: 114 IPHYQ 118


>sp|AATC_METST|A-TYPE ATP synthase subunit C|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 LVQHVPHYQS 10
+ H+P Y S
Sbjct: 307 VADHIPEYNS 316




212|Sequence|1056|1065|PHYQSQHPHV

>sp|GGR_METAR|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanocella arvoryzae (strain DSM 22066

Query: 2 HYQSQHP 8
HY+ +HP
Sbjct: 229 HYKGKHP 235


>sp|RL13E_SACI1|LARGE ribosomal subunit protein eL13|Saccharolobus islandicus (strain

Query: 1 PHYQSQHPH 9
P+Y +HPH
Sbjct: 11 PNYHFEHPH 19


>sp|PRIL_METAR|DNA primase large subunit PriL|Methanocella arvoryzae (strain DSM 22066

Query: 2 HYQSQH 7
HYQ QH
Sbjct: 279 HYQVQH 284


>sp|CBID_METHJ|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 YQSQHPHV 10
Y+S HP+V
Sbjct: 312 YKSAHPNV 319


>sp|DAPA_METTH|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 PHYQSQHPH 9
P+Y PH
Sbjct: 106 PYYNKPQPH 114


>sp|PSTS_METJA|PHOSPHATE-BINDING protein PstS|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 YQSQHPHV 10
YQ HP+V
Sbjct: 73 YQKTHPNV 80


>sp|SEPS_METTH|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 PHYQSQHPHV 10
PH+ Q+P +
Sbjct: 28 PHHDMQYPRL 37


>sp|AGL8_HALVD|LOW-SALT glycan biosynthesis protein Agl8|Haloferax volcanii (strain ATCC

Query: 1 PHYQSQHPHV 10
P Y+ HP+V
Sbjct: 139 PPYEGLHPYV 148


>sp|APGM_PYRAB|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrococcus abyssi (strain GE5 /

Query: 1 PHYQSQHPH 9
PH + + PH
Sbjct: 166 PHVEGKPPH 174


>sp|RL13E_SACI7|LARGE ribosomal subunit protein eL13|Saccharolobus islandicus (strain

Query: 1 PHYQSQHPH 9
P+Y ++PH
Sbjct: 11 PNYHFEYPH 19


>sp|RL13E_SACI6|LARGE ribosomal subunit protein eL13|Saccharolobus islandicus (strain

Query: 1 PHYQSQHPH 9
P+Y ++PH
Sbjct: 11 PNYHFEYPH 19


>sp|RL13E_SACI4|LARGE ribosomal subunit protein eL13|Saccharolobus islandicus (strain

Query: 1 PHYQSQHPH 9
P+Y ++PH
Sbjct: 11 PNYHFEYPH 19


>sp|RL13E_SACI3|LARGE ribosomal subunit protein eL13|Saccharolobus islandicus (strain

Query: 1 PHYQSQHPH 9
P+Y ++PH
Sbjct: 11 PNYHFEYPH 19


>sp|RL2_CENSY|LARGE ribosomal subunit protein uL2|Cenarchaeum symbiosum (strain A)

Query: 1 PHYQSQHPHV 10
PH +H HV
Sbjct: 201 PHGGGRHQHV 210


>sp|SYV_THEKO|VALINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 YQSQHP 8
YQ++HP
Sbjct: 162 YQAEHP 167




213|Sequence|1061|1070|QHPHVYSPVI

>sp|MTQ2_METJA|RELEASE factor glutamine methyltransferase Mtq2|Methanocaldococcus

Query: 2 HPHVYSP 8
HP VY P
Sbjct: 13 HPEVYEP 19


>sp|Y2093_ARCFU|UNCHARACTERIZED protein AF_2093|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 HPHVYSP 8
HPHV P
Sbjct: 80 HPHVIKP 86


>sp|Y1587_METJA|UNCHARACTERIZED protein MJ1587|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PHVYSPV 9
PH YSP+
Sbjct: 114 PHPYSPI 120


>sp|GATD_NANEQ|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 HPHVYS 7
HP+VYS
Sbjct: 343 HPYVYS 348


>sp|RTCA_HYPBU|RNA 3'-terminal phosphate cyclase|Hyperthermus butylicus (strain DSM

Query: 1 QHPHVYSPV 9
Q PHV PV
Sbjct: 170 QPPHVLKPV 178


>sp|PUR2_METVS|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 HPHVYS 7
HPH Y+
Sbjct: 221 HPHAYN 226


>sp|PUR2_METMP|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 HPHVYS 7
HPH Y+
Sbjct: 221 HPHAYN 226


>sp|PUR2_METM7|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C7 /

Query: 2 HPHVYS 7
HPH Y+
Sbjct: 221 HPHAYN 226


>sp|PUR2_METM6|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C6 /

Query: 2 HPHVYS 7
HPH Y+
Sbjct: 221 HPHAYN 226


>sp|PUR2_METM5|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C5 /

Query: 2 HPHVYS 7
HPH Y+
Sbjct: 221 HPHAYN 226


>sp|SYW_METTH|TRYPTOPHAN--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 HVYSPVI 10
H+Y+P+I
Sbjct: 180 HMYAPII 186


>sp|IF2P_METHJ|PROBABLE translation initiation factor IF-2|Methanospirillum hungatei JF-1

Query: 3 PHVYSPVI 10
PH+ +P++
Sbjct: 16 PHIRTPIV 23


>sp|RSMA_PYRIL|PROBABLE ribosomal RNA small subunit|Pyrobaculum islandicum (strain DSM 4184

Query: 3 PHVYSP 8
PHV+SP
Sbjct: 155 PHVFSP 160


>sp|COFH_METAR|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanocella arvoryzae (strain DSM

Query: 2 HPHVYSPV 9
H H +SP+
Sbjct: 126 HTHAFSPM 133


>sp|CIMA_SULAC|(R)-CITRAMALATE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 HPHVYSPVI 10
HP+ Y P +
Sbjct: 285 HPNPYQPYV 293


>sp|NOP10_METKA|RIBOSOME biogenesis protein Nop10|Methanopyrus kandleri (strain AV19 /

Query: 2 HPHVYSP 8
HPH +SP
Sbjct: 32 HPHRFSP 38


>sp|PUR2_METKA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 HPHVY 6
HPH Y
Sbjct: 221 HPHAY 225


>sp|PUR2_METTH|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 HPHVY 6
HPH Y
Sbjct: 215 HPHAY 219


>sp|RNZ_PYRNV|RIBONUCLEASE Z|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 PHVYSP 8
PHVY P
Sbjct: 272 PHVYVP 277


>sp|PORA_METBF|PYRUVATE synthase subunit PorA|Methanosarcina barkeri (strain Fusaro /

Query: 4 HVYSPVI 10
HVY PV+
Sbjct: 181 HVYEPVV 187


>sp|CPGS_METFV|CYCLIC 2,3-diphosphoglycerate synthetase|Methanothermus fervidus (strain

Query: 2 HPHVYSPVI 10
H H Y+P +
Sbjct: 161 HKHKYNPCV 169




214|Sequence|1066|1075|YSPVIQGNAR

>sp|GPMI_METBU|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcoides burtonii (strain DSM

Query: 1 YSPVIQGNA 9
YSP ++GNA
Sbjct: 18 YSPEVEGNA 26


>sp|AHBD_METBF|ADOMET-DEPENDENT heme synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 YSPVIQGNAR 10
Y PV+ GN R
Sbjct: 276 YLPVLAGNIR 285


>sp|ATGT_SULTO|TRNA-GUANINE(15) transglycosylase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 YSPVIQGNAR 10
Y P ++GN R
Sbjct: 355 YDPRVKGNIR 364


>sp|EF2_METRM|ELONGATION factor 2|Methanobrevibacter ruminantium (strain ATCC 35063

Query: 1 YSPVIQGNA 9
+SPVI+G +
Sbjct: 474 HSPVIEGKS 482


>sp|GLKA_THELN|ADP-DEPENDENT glucose/glucosamine kinase|Thermococcus litoralis (strain ATCC

Query: 1 YSPVIQGN 8
Y PV +GN
Sbjct: 158 YVPVFEGN 165




215|Sequence|1071|1080|QGNARMMAPP

>sp|LMRAC_THELN|LEUCINE/METHIONINE racemase|Thermococcus litoralis (strain ATCC 51850

Query: 1 QGNARMMAPP 10
QG+A M+ PP
Sbjct: 214 QGDAGMVVPP 223


>sp|LMRAC_THEKO|LEUCINE/METHIONINE racemase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 QGNARMMAPP 10
QG+A M+ PP
Sbjct: 214 QGDAGMVVPP 223


>sp|RSMA_METAC|PROBABLE ribosomal RNA small subunit|Methanosarcina acetivorans (strain ATCC

Query: 4 ARMMAPP 10
ARM++PP
Sbjct: 138 ARMVSPP 144


>sp|ASRAC_PYRHO|ALANINE/SERINE racemase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 QGNARMMAPP 10
QG+A ++ PP
Sbjct: 249 QGDAGIVVPP 258




216|Sequence|1076|1085|MMAPPTHAQP

>sp|TOP6B_THESM|TYPE 2 DNA topoisomerase 6|Thermococcus sibiricus (strain DSM 12597

Query: 2 MAPPTHA 8
+APPTH
Sbjct: 355 LAPPTHG 361


>sp|TOP6B_PYRAB|TYPE 2 DNA topoisomerase 6|Pyrococcus abyssi (strain GE5 /

Query: 2 MAPPTHA 8
+APPTH
Sbjct: 352 LAPPTHG 358


>sp|TOP6B_THEON|TYPE 2 DNA topoisomerase 6|Thermococcus onnurineus (strain NA1)

Query: 2 MAPPTHA 8
+APPTH
Sbjct: 351 LAPPTHG 357


>sp|TOP6B_PYRHO|TYPE 2 DNA topoisomerase 6|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 MAPPTHA 8
+APPTH
Sbjct: 352 LAPPTHG 358


>sp|TOP6B_THEGJ|TYPE 2 DNA topoisomerase 6|Thermococcus gammatolerans (strain DSM 15229

Query: 2 MAPPTHA 8
+APPTH
Sbjct: 351 LAPPTHG 357


>sp|TOP6B_THEKO|TYPE 2 DNA topoisomerase 6|Thermococcus kodakarensis (strain ATCC

Query: 2 MAPPTHA 8
+APPTH
Sbjct: 352 LAPPTHG 358


>sp|DP2L_CENSY|DNA polymerase II large subunit|Cenarchaeum symbiosum (strain A)

Query: 2 MAPPTH 7
M PPTH
Sbjct: 586 MRPPTH 591


>sp|AATA_CENSY|A-TYPE ATP synthase subunit A|Cenarchaeum symbiosum (strain A)

Query: 1 MMAPPTHA 8
+M PP HA
Sbjct: 149 IMVPPDHA 156


>sp|RL4_METST|LARGE ribosomal subunit protein uL4|Methanosphaera stadtmanae (strain

Query: 1 MMAPPTHA 8
++AP THA
Sbjct: 229 LLAPGTHA 236


>sp|RL4_METBU|LARGE ribosomal subunit protein uL4|Methanococcoides burtonii (strain DSM

Query: 1 MMAPPTHA 8
++AP THA
Sbjct: 227 LLAPGTHA 234




217|Sequence|1081|1090|THAQPGLVSS

***** No hits found ******


218|Sequence|1086|1095|GLVSSSATQY

***** No hits found ******


219|Sequence|1091|1100|SATQYGAHEQ

>sp|PELO_SACS2|PROTEIN pelota homolog|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 SATQYGAHE 9
SAT+ G HE
Sbjct: 221 SATRAGLHE 229


>sp|PELO_SACI7|PROTEIN pelota homolog|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 SATQYGAHE 9
SAT+ G HE
Sbjct: 221 SATRAGLHE 229


>sp|PELO_SACI6|PROTEIN pelota homolog|Saccharolobus islandicus (strain M.16.4 /

Query: 1 SATQYGAHE 9
SAT+ G HE
Sbjct: 221 SATRAGLHE 229


>sp|PELO_SACI4|PROTEIN pelota homolog|Saccharolobus islandicus (strain M.14.25 /

Query: 1 SATQYGAHE 9
SAT+ G HE
Sbjct: 221 SATRAGLHE 229


>sp|PELO_SACI3|PROTEIN pelota homolog|Saccharolobus islandicus (strain M.16.27)

Query: 1 SATQYGAHE 9
SAT+ G HE
Sbjct: 221 SATRAGLHE 229


>sp|PELO_SACI2|PROTEIN pelota homolog|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 SATQYGAHE 9
SAT+ G HE
Sbjct: 221 SATRAGLHE 229


>sp|PELO_SACI1|PROTEIN pelota homolog|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 SATQYGAHE 9
SAT+ G HE
Sbjct: 221 SATRAGLHE 229


>sp|RL30_METLZ|LARGE ribosomal subunit protein uL30|Methanocorpusculum labreanum

Query: 1 SATQYGAHEQ 10
SAT YG+ E+
Sbjct: 85 SATSYGSIEE 94


>sp|SYH_HALWD|HISTIDINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 SATQYGAHE 9
+ATQYG E
Sbjct: 29 TATQYGFRE 37




220|Sequence|1096|1105|GAHEQTHAMY

>sp|GSA_HALMA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Haloarcula marismortui (strain ATCC 43049

Query: 3 HEQTHAMY 10
HEQ+ A+Y
Sbjct: 3 HEQSRALY 10


>sp|NASD_HALMT|ASSIMILATORY ferredoxin-dependent nitrite reductase|Haloferax mediterranei

Query: 1 GAHEQTHAMY 10
G HEQ+ Y
Sbjct: 327 GVHEQSDGRY 336




221|Sequence|1101|1110|THAMYACPKL

>sp|HYPA_THEON|HYDROGENASE maturation factor HypA|Thermococcus onnurineus (strain NA1)

Query: 2 HAMYACPK 9
HA ACPK
Sbjct: 105 HAFLACPK 112


>sp|HYPA_THEKO|HYDROGENASE maturation factor HypA|Thermococcus kodakarensis (strain ATCC

Query: 2 HAMYACPK 9
HA ACPK
Sbjct: 105 HAFLACPK 112


>sp|HYPA_THEGJ|HYDROGENASE maturation factor HypA|Thermococcus gammatolerans (strain DSM 15229

Query: 2 HAMYACPK 9
HA ACPK
Sbjct: 105 HAFLACPK 112


>sp|HYPA_PYRFU|HYDROGENASE maturation factor HypA|Pyrococcus furiosus (strain ATCC 43587

Query: 2 HAMYACPK 9
HA +CPK
Sbjct: 105 HAFLSCPK 112


>sp|SYV_PYRHO|VALINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 HAMYACPK 9
H +Y CPK
Sbjct: 166 HPVYWCPK 173


>sp|SYV_PYRAB|VALINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 HAMYACPK 9
H +Y CPK
Sbjct: 166 HPVYWCPK 173


>sp|HYPA_THESM|HYDROGENASE maturation factor HypA|Thermococcus sibiricus (strain DSM 12597

Query: 2 HAMYACP 8
HA ACP
Sbjct: 105 HAFLACP 111


>sp|HYPA_PYRHO|HYDROGENASE maturation factor HypA|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 HAMYACPK 9
HA +CP+
Sbjct: 105 HAFLSCPR 112


>sp|RL37A_METST|LARGE ribosomal subunit protein eL43|Methanosphaera stadtmanae (strain

Query: 2 HAMYACPK 9
HA + CPK
Sbjct: 33 HAKHVCPK 40


>sp|Y668_METJA|UNCHARACTERIZED protein MJ0668|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 MYACPKL 10
+ ACPKL
Sbjct: 71 LIACPKL 77


>sp|DP2L_METLZ|DNA polymerase II large subunit|Methanocorpusculum labreanum (strain

Query: 1 THAMYACP 8
T A+Y CP
Sbjct: 663 TDAVYRCP 670


>sp|Y1489_METJA|MCM-LIKE protein MJ1489|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 AMYACPK 9
A Y CPK
Sbjct: 147 AYYICPK 153


>sp|DADD_METVS|5'-DEOXYADENOSINE deaminase|Methanococcus vannielii (strain ATCC 35089

Query: 2 HAMYACPK 9
HA Y C K
Sbjct: 178 HAPYTCSK 185


>sp|DADD_METST|5'-DEOXYADENOSINE deaminase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 HAMYACPK 9
HA Y C K
Sbjct: 183 HAPYTCSK 190


>sp|DADD_METMP|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain DSM 14266

Query: 2 HAMYACPK 9
HA Y C K
Sbjct: 178 HAPYTCSK 185


>sp|DADD_METM7|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain C7 /

Query: 2 HAMYACPK 9
HA Y C K
Sbjct: 178 HAPYTCSK 185


>sp|DADD_METM6|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain C6 /

Query: 2 HAMYACPK 9
HA Y C K
Sbjct: 178 HAPYTCSK 185


>sp|DADD_METM5|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain C5 /

Query: 2 HAMYACPK 9
HA Y C K
Sbjct: 178 HAPYTCSK 185


>sp|DADD_METJA|5'-DEOXYADENOSINE deaminase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 HAMYACPK 9
HA Y C K
Sbjct: 176 HAPYTCSK 183


>sp|RS34_SACS2|SMALL ribosomal subunit protein aS34|Saccharolobus solfataricus (strain

Query: 1 THAMYACPK 9
T +Y CPK
Sbjct: 32 TDILYKCPK 40




222|Sequence|1106|1115|ACPKLPYNKE

>sp|CFBA_METBF|SIROHYDROCHLORIN cobaltochelatase|Methanosarcina barkeri (strain Fusaro /

Query: 4 KLPYNKE 10
KLPYNKE
Sbjct: 15 KLPYNKE 21


>sp|CFBA_METAC|SIROHYDROCHLORIN cobaltochelatase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 KLPYNKE 10
KLPYNKE
Sbjct: 15 KLPYNKE 21


>sp|CFBA_METMA|SIROHYDROCHLORIN cobaltochelatase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 KLPYNKE 10
KLPYNKE
Sbjct: 15 KLPYNKE 21


>sp|CFBA_METBU|SIROHYDROCHLORIN cobaltochelatase|Methanococcoides burtonii (strain DSM 6242

Query: 4 KLPYNKE 10
+LPYNKE
Sbjct: 15 RLPYNKE 21


>sp|Y685_METJA|UNCHARACTERIZED ATP-binding protein MJ0685|Methanocaldococcus jannaschii (strain

Query: 4 KLPYNKE 10
KLPYNKE
Sbjct: 211 KLPYNKE 217


>sp|NCPP_CALMQ|PROBABLE inosine/xanthosine triphosphatase|Caldivirga maquilingensis (strain

Query: 3 PKLPYNKE 10
P++P+NK+
Sbjct: 168 PRMPWNKD 175


>sp|TRM1_METHJ|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanospirillum hungatei

Query: 2 CPKLPYNKE 10
CPK PY E
Sbjct: 237 CPKCPYRLE 245


>sp|PYRH_METBF|URIDYLATE kinase|Methanosarcina barkeri (strain Fusaro /

Query: 1 ACPKLPYN 8
ACP++P N
Sbjct: 87 ACPEIPTN 94


>sp|MSMS_METAC|METHYL sulfide methyltransferase-associated sensor|Methanosarcina

Query: 1 ACPKLP 6
ACP LP
Sbjct: 352 ACPSLP 357


>sp|PYRH_PYRIL|URIDYLATE kinase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 ACPKLPYNKE 10
ACP +P N E
Sbjct: 81 ACPIVPTNIE 90


>sp|RRP42_THEGJ|EXOSOME complex component Rrp42|Thermococcus gammatolerans (strain DSM

Query: 3 PKLPYNKE 10
PK+ YN+E
Sbjct: 167 PKVEYNEE 174


>sp|Y1396_METJA|UNCHARACTERIZED protein MJ1396|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 LPYNKE 10
PYNKE
Sbjct: 598 FPYNKE 603


>sp|ARNS_SULAC|SERINE/THREONINE-PROTEIN kinase ArnS|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 PKLPYN 8
PKLP+N
Sbjct: 586 PKLPHN 591


>sp|AROA_METJA|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanocaldococcus jannaschii (strain

Query: 5 LPYNKE 10
LP+NKE
Sbjct: 179 LPFNKE 184


>sp|PCNA_NITMS|DNA polymerase sliding clamp|Nitrosopumilus maritimus (strain SCM1)

Query: 3 PKLPYNKE 10
PK+PY+ +
Sbjct: 124 PKIPYDSK 131


>sp|RRP42_PYRHO|EXOSOME complex component Rrp42|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 PKLPYNKE 10
PK+ YN+E
Sbjct: 167 PKVEYNEE 174


>sp|CFBA_META3|SIROHYDROCHLORIN cobaltochelatase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 KLPYNKE 10
+LPY+KE
Sbjct: 12 RLPYSKE 18


>sp|RRP42_THEKO|EXOSOME complex component Rrp42|Thermococcus kodakarensis (strain ATCC

Query: 3 PKLPYNKE 10
PK+ YN+E
Sbjct: 167 PKVNYNEE 174


>sp|GLGA_METJA|PROBABLE glycogen synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CPKLPYNK 9
CPK PY++
Sbjct: 469 CPKHPYDE 476


>sp|CFBA_METJA|SIROHYDROCHLORIN cobaltochelatase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 KLPYNKE 10
+LPY+KE
Sbjct: 12 RLPYSKE 18


>sp|RRP42_PYRAB|EXOSOME complex component Rrp42|Pyrococcus abyssi (strain GE5 /

Query: 3 PKLPYNKE 10
PK+ YN+E
Sbjct: 167 PKVRYNEE 174


>sp|HYD2D_PYRFU|SULFHYDROGENASE 2 subunit delta|Pyrococcus furiosus (strain ATCC 43587

Query: 1 ACPKLPYNKE 10
A P PY+KE
Sbjct: 128 AIPGCPYDKE 137


>sp|Y011_METJA|UNCHARACTERIZED protein MJ0011|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ACPKLPY 7
CP +PY
Sbjct: 139 GCPDVPY 145


>sp|TBP_PYRHO|TATA-BOX-BINDING protein|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 CPKLPYNKE 10
CP YN E
Sbjct: 33 CPNSKYNPE 41


>sp|NCPP_PYRAE|PROBABLE inosine/xanthosine triphosphatase|Pyrobaculum aerophilum (strain

Query: 3 PKLPYNKE 10
P+LP+N +
Sbjct: 166 PRLPHNSQ 173




223|Sequence|1111|1120|PYNKETSPSF

>sp|SYFA_METS5|PHENYLALANINE--TRNA ligase alpha subunit|Metallosphaera sedula (strain ATCC 51363

Query: 1 PYNKETSPSF 10
PYN E +P F
Sbjct: 200 PYNVEANPPF 209


>sp|Y1287_METMA|UPF0313 protein MM_1287|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PYNKETSPSF 10
PY ET PS+
Sbjct: 305 PYTGETHPSY 314


>sp|SYFA_HALSA|PHENYLALANINE--TRNA ligase alpha subunit|Halobacterium salinarum (strain ATCC 700922

Query: 2 YNKETSPSF 10
YN T PSF
Sbjct: 419 YNPYTEPSF 427


>sp|SYFA_HALS3|PHENYLALANINE--TRNA ligase alpha subunit|Halobacterium salinarum (strain ATCC 29341

Query: 2 YNKETSPSF 10
YN T PSF
Sbjct: 419 YNPYTEPSF 427


>sp|EF2_THESM|ELONGATION factor 2|Thermococcus sibiricus (strain DSM 12597

Query: 1 PYNKETSPSF 10
PY K+T SF
Sbjct: 214 PYMKKTGVSF 223


>sp|RL5_METKA|LARGE ribosomal subunit protein uL5|Methanopyrus kandleri (strain AV19

Query: 4 KETSPSF 10
K+T+PSF
Sbjct: 63 KQTNPSF 69


>sp|EF2_THEKO|ELONGATION factor 2|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PYNKETSPSF 10
PY K+T SF
Sbjct: 214 PYMKKTGVSF 223


>sp|TRI_SACS2|TRICORN protease homolog|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PYNKETSPSF 10
PY + SPSF
Sbjct: 504 PYGYDFSPSF 513


>sp|TRIC_SULTO|PUTATIVE Tricorn-like protease C-terminal subunit|Sulfurisphaera tokodaii

Query: 1 PYNKETSPSF 10
PY + SPSF
Sbjct: 289 PYGYDFSPSF 298


>sp|AATA_METMJ|A-TYPE ATP synthase subunit A|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 YNKETSPSF 10
Y+KE SP +
Sbjct: 445 YDKEVSPEW 453




224|Sequence|1116|1125|TSPSFYFAIS

>sp|COBD_METTH|PROBABLE cobalamin biosynthesis protein CobD|Methanothermobacter

Query: 1 TSPSFYFAI 9
T+P FYF +
Sbjct: 146 TAPIFYFIL 154




225|Sequence|1121|1130|YFAISTGSLA

>sp|AGLD_HALVD|GLYCOSYLTRANSFERASE AglD|Haloferax volcanii (strain ATCC 29605

Query: 1 YFAISTGSLA 10
+FA+S G+LA
Sbjct: 532 FFAVSVGNLA 541


>sp|PCNA_THEPD|DNA polymerase sliding clamp|Thermofilum pendens (strain DSM 2475

Query: 2 FAISTGSL 9
F+I TGSL
Sbjct: 177 FSIETGSL 184




226|Sequence|1126|1135|TGSLAQQYAH

>sp|ADEC_META3|ADENINE deaminase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 TGSLAQQYAH 10
TG++A YAH
Sbjct: 475 TGTIASSYAH 484


>sp|ADEC_METJA|ADENINE deaminase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GSLAQQYAH 10
G+LA YAH
Sbjct: 439 GALASSYAH 447


>sp|RADB_ARCFU|DNA repair and recombination protein|Archaeoglobus fulgidus (strain

Query: 1 TGSLAQQYAH 10
TG++ Q Y H
Sbjct: 23 TGTVTQIYGH 32


>sp|RS3A_SACI7|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 TGSLAQQYAH 10
TG +Q Y H
Sbjct: 55 TGDFSQVYVH 64


>sp|RS3A_SACI6|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 TGSLAQQYAH 10
TG +Q Y H
Sbjct: 55 TGDFSQVYVH 64


>sp|RS3A_SACI4|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 TGSLAQQYAH 10
TG +Q Y H
Sbjct: 55 TGDFSQVYVH 64


>sp|RS3A_SACI3|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 TGSLAQQYAH 10
TG +Q Y H
Sbjct: 55 TGDFSQVYVH 64


>sp|RS3A_SACI2|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 TGSLAQQYAH 10
TG +Q Y H
Sbjct: 55 TGDFSQVYVH 64


>sp|RS3A_SACI1|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 TGSLAQQYAH 10
TG +Q Y H
Sbjct: 55 TGDFSQVYVH 64


>sp|HEM1_CALMQ|GLUTAMYL-TRNA reductase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 GSLAQQYAH 10
GSL +Y H
Sbjct: 159 GSLVAEYVH 167


>sp|RS3A_SACS2|SMALL ribosomal subunit protein eS1|Saccharolobus solfataricus (strain

Query: 1 TGSLAQQYAH 10
TG +Q Y H
Sbjct: 55 TGDFSQVYVH 64




227|Sequence|1131|1140|QQYAHPNATL

>sp|ASSY_ARCFU|ARGININOSUCCINATE synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 QQYAHPNATL 10
+ Y HP AT+
Sbjct: 264 ENYEHPAATI 273


>sp|ACDE2_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Archaeoglobus

Query: 2 QYAHPNATL 10
+Y HPNA +
Sbjct: 144 RYYHPNADM 152


>sp|CARB_SULTO|CARBAMOYL phosphate synthase large chain|Sulfurisphaera tokodaii (strain DSM

Query: 1 QQYAHPNAT 9
+ ++HPN T
Sbjct: 1030 RAFSHPNVT 1038




228|Sequence|1136|1145|PNATLHPHTP

>sp|SYG_THEKO|GLYCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PNATLHPH 8
PN T HPH
Sbjct: 223 PNETEHPH 230


>sp|SYG_PYRHO|GLYCINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PNATLHPH 8
PN T HPH
Sbjct: 223 PNETEHPH 230


>sp|SYG_PYRFU|GLYCINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PNATLHPH 8
PN T HPH
Sbjct: 221 PNETEHPH 228


>sp|SYG_PYRAB|GLYCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 PNATLHPH 8
PN T HPH
Sbjct: 223 PNETEHPH 230


>sp|COFH_METTH|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanothermobacter thermautotrophicus

Query: 1 PNATLHPHTP 10
P +HPH P
Sbjct: 251 PLPFMHPHAP 260


>sp|SYN_THEKO|ASPARAGINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 ATLHPHTP 10
ATL P TP
Sbjct: 419 ATLFPRTP 426


>sp|SYN_THEGJ|ASPARAGINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 3 ATLHPHTP 10
ATL P TP
Sbjct: 418 ATLFPRTP 425


>sp|SYL_PYRNV|LEUCINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 221 PTATLRPET 229


>sp|Y1519_METMJ|UPF0280 protein Memar_1519|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 NATLHPHTP 10
+ATL P+TP
Sbjct: 48 SATLEPYTP 56


>sp|SYN_PYRAB|ASPARAGINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 3 ATLHPHTP 10
ATL P TP
Sbjct: 422 ATLFPRTP 429


>sp|SYL_PYRCJ|LEUCINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 221 PTATLRPET 229


>sp|SYL_THEON|LEUCINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 226 PAATLRPET 234


>sp|SYL_THEKO|LEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 226 PAATLRPET 234


>sp|SYL_PYRHO|LEUCINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 226 PAATLRPET 234


>sp|SYL_PYRFU|LEUCINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 226 PAATLRPET 234


>sp|SYL_PYRAB|LEUCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 226 PAATLRPET 234


>sp|S1PNA_SULTO|BIFUNCTIONAL sugar-1-phosphate

Query: 1 PNATLHPHT 9
PN+ L P+T
Sbjct: 273 PNSYLRPYT 281


>sp|LON_METST|LON protease|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 PNATLHPHT 9
PN L PHT
Sbjct: 47 PNTILLPHT 55


>sp|SYL2_SULTO|LEUCINE--TRNA ligase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 213 PAATLRPET 221


>sp|ASSY_THEAC|ARGININOSUCCINATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 NATLHPH 8
NAT+H H
Sbjct: 379 NATVHSH 385


>sp|SYL_METVS|LEUCINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 229 PMATLRPET 237


>sp|SYL_METMP|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 232 PMATLRPET 240


>sp|SYL_METM7|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 232 PMATLRPET 240


>sp|SYL_METM5|LEUCINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 232 PMATLRPET 240


>sp|SYL_METJA|LEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 219 PMATLRPET 227


>sp|SYL2_SACS2|LEUCINE--TRNA ligase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 213 PAATLRPET 221


>sp|SYL_META3|LEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 235 PMATLRPET 243


>sp|SYL_PYRIL|LEUCINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 221 PAATLRPET 229


>sp|SYL_PYRAE|LEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 221 PAATLRPET 229


>sp|SYL_PYRAR|LEUCINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 PNATLHPHT 9
P ATL P T
Sbjct: 221 PAATLRPET 229


>sp|ARGC_METTH|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 NATLHPHTP 10
N T H HTP
Sbjct: 197 NVTGHRHTP 205




229|Sequence|1141|1150|HPHTPHPQPS

>sp|PYRG_SULTO|CTP synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 PHTPHP 7
P+TPHP
Sbjct: 409 PNTPHP 414


>sp|ATRMA_PYRHO|TRNA (uracil(54)-C(5))-methyltransferase|Pyrococcus horikoshii (strain

Query: 2 PHTPH 6
PHTPH
Sbjct: 394 PHTPH 398


>sp|ATRMA_PYRFU|TRNA (uracil(54)-C(5))-methyltransferase|Pyrococcus furiosus (strain

Query: 2 PHTPH 6
PHTPH
Sbjct: 396 PHTPH 400


>sp|ATRMA_PYRAB|TRNA (uracil(54)-C(5))-methyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 2 PHTPH 6
PHTPH
Sbjct: 393 PHTPH 397


>sp|ARLMC_PYRAB|23S rRNA (uracil(747)-C(5))-methyltransferase|Pyrococcus abyssi (strain

Query: 2 PHTPH 6
PHTPH
Sbjct: 396 PHTPH 400


>sp|ARLMC_PYRHO|23S rRNA (uracil(747)-C(5))-methyltransferase|Pyrococcus horikoshii

Query: 2 PHTPH 6
PHTPH
Sbjct: 398 PHTPH 402


>sp|DNAG_CALMQ|DNA primase DnaG|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 PHTPHPQP 9
P +P PQP
Sbjct: 303 PTSPQPQP 310


>sp|PYRDB_METMA|DIHYDROOROTATE dehydrogenase B (NAD(+)), catalytic|Methanosarcina mazei (strain

Query: 2 PHTPHPQPS 10
P T HP PS
Sbjct: 61 PKTGHPNPS 69


>sp|ARLMC_PYRFU|23S rRNA (uracil(747)-C(5))-methyltransferase|Pyrococcus furiosus

Query: 2 PHTPH 6
PHTPH
Sbjct: 394 PHTPH 398


>sp|PUS10_THEPD|TRNA pseudouridine synthase Pus10|Thermofilum pendens (strain DSM 2475

Query: 2 PHTPHPQP 9
P P PQP
Sbjct: 222 PQNPWPQP 229


>sp|Y1631_METJA|UNCHARACTERIZED protein MJ1631|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HPHTPHPQP 9
H + PHP P
Sbjct: 163 HMNEPHPLP 171


>sp|TRUA_METTP|TRNA pseudouridine synthase A|Methanothrix thermoacetophila (strain DSM

Query: 2 PHTPHPQPS 10
P TPH P+
Sbjct: 202 PSTPHGAPT 210


>sp|DNAG_THEGJ|DNA primase DnaG|Thermococcus gammatolerans (strain DSM 15229

Query: 3 HTPHPQP 9
H P PQP
Sbjct: 331 HEPKPQP 337


>sp|SYH_KORCO|HISTIDINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 HPHTPHP 7
HP TP P
Sbjct: 91 HPETPLP 97


>sp|NASD_HALMT|ASSIMILATORY ferredoxin-dependent nitrite reductase|Haloferax mediterranei

Query: 3 HTPHPQP 9
HTP P P
Sbjct: 397 HTPEPNP 403


>sp|PYRG_AERPE|CTP synthase|Aeropyrum pernix (strain ATCC 700893

Query: 1 HPHTPHP 7
+P TPHP
Sbjct: 411 NPETPHP 417


>sp|TRIN_SULTO|PUTATIVE Tricorn-like protease N-terminal subunit|Sulfurisphaera tokodaii

Query: 3 HTPHPQPS 10
HTP PQ S
Sbjct: 126 HTPFPQWS 133


>sp|PYRG_PYRAE|CTP synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 PHTPHP 7
P TPHP
Sbjct: 405 PETPHP 410


>sp|PYRG_PYRCJ|CTP synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 PHTPHP 7
P TPHP
Sbjct: 405 PQTPHP 410


>sp|TRPB_HALVD|TRYPTOPHAN synthase beta chain|Haloferax volcanii (strain ATCC 29605

Query: 5 PHPQPS 10
PHP PS
Sbjct: 194 PHPFPS 199


>sp|PYRG_HALWD|CTP synthase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 HPHTPHP 7
P TPHP
Sbjct: 417 QPETPHP 423


>sp|ORNAT_PYRHO|ORNITHINE aminotransferase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 HTPHPQP 9
H P+P P
Sbjct: 181 HVPYPNP 187


>sp|SPEE_PYRAE|POLYAMINE aminopropyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 HPH-TPHPQPS 10
HP T HP+PS
Sbjct: 72 HPAVTTHPRPS 82


>sp|SYE_HALWD|GLUTAMATE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 4 TPHPQP 9
TPHP+P
Sbjct: 279 TPHPRP 284


>sp|MTAP_SACS2|S-METHYL-5'-THIOADENOSINE phosphorylase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 HTPHPQPS 10
+TP+ QPS
Sbjct: 33 YTPYGQPS 40


>sp|Y189_METAR|UPF0313 protein UNCMA_01890|Methanocella arvoryzae (strain DSM 22066

Query: 2 PHTPHPQPS 10
P+T +P PS
Sbjct: 270 PYTRYPHPS 278


>sp|TRPB_THEAC|TRYPTOPHAN synthase beta chain|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 PHPQPS 10
PHP PS
Sbjct: 177 PHPSPS 182


>sp|ORNAT_THEKO|ORNITHINE aminotransferase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 HTPHPQP 9
H P+P P
Sbjct: 181 HIPYPNP 187


>sp|TRPB_THEVO|TRYPTOPHAN synthase beta chain|Thermoplasma volcanium (strain ATCC 51530

Query: 5 PHPQPS 10
PHP PS
Sbjct: 177 PHPSPS 182




230|Sequence|1146|1155|HPQPSATPTG

>sp|TRPG_METTH|ANTHRANILATE synthase component 2|Methanothermobacter thermautotrophicus (strain

Query: 1 HPQPSATPTG 10
HP+ + TP+G
Sbjct: 177 HPESAGTPSG 186


>sp|THII_AERPE|PROBABLE tRNA sulfurtransferase|Aeropyrum pernix (strain ATCC 700893

Query: 2 PQPSATPTG 10
P P A+P G
Sbjct: 351 PNPRASPQG 359


>sp|DNAG_CALMQ|DNA primase DnaG|Caldivirga maquilingensis (strain ATCC 700844

Query: 3 QPSATPT 9
QPSA PT
Sbjct: 298 QPSAAPT 304


>sp|GUAAA_METST|GMP synthase [glutamine-hydrolyzing] subunit A|Methanosphaera

Query: 1 HPQPSATPTG 10
HP+ TP G
Sbjct: 163 HPEVQHTPRG 172


>sp|TRPG_METTM|ANTHRANILATE synthase component 2|Methanothermobacter marburgensis (strain ATCC

Query: 1 HPQPSATPTG 10
HP+ + TP G
Sbjct: 177 HPESAGTPHG 186


>sp|Y544_THEVO|UNCHARACTERIZED solute-binding protein TV0544|Thermoplasma volcanium (strain ATCC

Query: 3 QPSATPTG 10
QPS TP+G
Sbjct: 2 QPSFTPSG 9


>sp|KDPC_THEAC|POTASSIUM-TRANSPORTING ATPase KdpC subunit|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 HPQPSA 6
HP+PSA
Sbjct: 66 HPRPSA 71


>sp|GFCR_HALVD|TRANSCRIPTIONAL regulator GfcR|Haloferax volcanii (strain ATCC 29605

Query: 2 PQPSATPTG 10
P+P A P G
Sbjct: 48 PEPRAEPEG 56




231|Sequence|1151|1160|ATPTGQQQSQ

***** No hits found ******


232|Sequence|1156|1165|QQQSQHGGSH

>sp|RPO1N_METTW|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanothermobacter thermautotrophicus

Query: 2 QQSQHGG 8
QQS HGG
Sbjct: 737 QQSVHGG 743


>sp|PSA_METMP|PROTEASOME subunit alpha|Methanococcus maripaludis (strain DSM 14266

Query: 1 QQQSQHGGS 9
Q +QHGG+
Sbjct: 123 QAYTQHGGA 131


>sp|PSA_METM7|PROTEASOME subunit alpha|Methanococcus maripaludis (strain C7 /

Query: 1 QQQSQHGGS 9
Q +QHGG+
Sbjct: 123 QAYTQHGGA 131


>sp|PSA_METM6|PROTEASOME subunit alpha|Methanococcus maripaludis (strain C6 /

Query: 1 QQQSQHGGS 9
Q +QHGG+
Sbjct: 123 QAYTQHGGA 131


>sp|PSA_METM5|PROTEASOME subunit alpha|Methanococcus maripaludis (strain C5 /

Query: 1 QQQSQHGGS 9
Q +QHGG+
Sbjct: 123 QAYTQHGGA 131


>sp|THIC_METHJ|PHOSPHOMETHYLPYRIMIDINE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 QQQSQHGG 8
Q+Q +HGG
Sbjct: 174 QRQGRHGG 181


>sp|CBIA_HALSA|COBYRINATE a,c-diamide synthase|Halobacterium salinarum (strain ATCC 700922

Query: 3 QSQHGGSH 10
Q HGG H
Sbjct: 156 QRAHGGRH 163




233|Sequence|1161|1170|HGGSHPAPSP

>sp|IF1A_DESA1|TRANSLATION initiation factor 1A|Desulfurococcus amylolyticus (strain DSM

Query: 1 HGGSHPAPSP 10
HGG P P+P
Sbjct: 15 HGGEIPLPNP 24


>sp|BACR1_HALWD|BACTERIORHODOPSIN-I walsbyi (strain DSM 16790

Query: 2 GGSHPAPS 9
GGS P PS
Sbjct: 240 GGSEPTPS 247


>sp|BACR1_HALWC|BACTERIORHODOPSIN-I walsbyi (strain DSM 16854

Query: 2 GGSHPAPS 9
GGS P PS
Sbjct: 240 GGSEPTPS 247


>sp|CFBD_METJA|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanocaldococcus

Query: 5 HPAPSP 10
HP PSP
Sbjct: 4 HPRPSP 9


>sp|TRPB_THEVO|TRYPTOPHAN synthase beta chain|Thermoplasma volcanium (strain ATCC 51530

Query: 3 GSHPAPSP 10
G+HP PSP
Sbjct: 174 GAHPHPSP 181


>sp|PYRH_METVS|URIDYLATE kinase|Methanococcus vannielii (strain ATCC 35089

Query: 2 GGSHPA 7
GG+HPA
Sbjct: 113 GGTHPA 118


>sp|PYRH_METMP|URIDYLATE kinase|Methanococcus maripaludis (strain DSM 14266

Query: 2 GGSHPA 7
GG+HPA
Sbjct: 113 GGTHPA 118


>sp|PYRH_METM7|URIDYLATE kinase|Methanococcus maripaludis (strain C7 /

Query: 2 GGSHPA 7
GG+HPA
Sbjct: 113 GGTHPA 118


>sp|PYRH_METM6|URIDYLATE kinase|Methanococcus maripaludis (strain C6 /

Query: 2 GGSHPA 7
GG+HPA
Sbjct: 113 GGTHPA 118


>sp|PYRH_METM5|URIDYLATE kinase|Methanococcus maripaludis (strain C5 /

Query: 2 GGSHPA 7
GG+HPA
Sbjct: 113 GGTHPA 118


>sp|PYRH_META3|URIDYLATE kinase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 GGSHPA 7
GG+HPA
Sbjct: 113 GGTHPA 118


>sp|ARSC_HALSA|PUTATIVE arsenate reductase|Halobacterium salinarum (strain ATCC 700922

Query: 2 GGSHPA 7
GG+HPA
Sbjct: 45 GGTHPA 50


>sp|KAE1B_PICTO|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 HGGSHP 6
HGG HP
Sbjct: 35 HGGIHP 40


>sp|COFH2_METMP|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase 2|Methanococcus maripaludis (strain DSM

Query: 1 HGGSHP 6
HGG HP
Sbjct: 103 HGGIHP 108


>sp|GLYA_METBF|SERINE hydroxymethyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 2 GGSHPAPSP 10
G HP+P P
Sbjct: 207 AGVHPSPVP 215


>sp|GLYA_METMA|SERINE hydroxymethyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GGSHPAPSP 10
G HP+P P
Sbjct: 207 AGVHPSPVP 215


>sp|RL29_THEVO|LARGE ribosomal subunit protein uL29|Thermoplasma volcanium (strain

Query: 2 GGSHPAP 8
GGS P+P
Sbjct: 38 GGSSPSP 44


>sp|RL29_THEAC|LARGE ribosomal subunit protein uL29|Thermoplasma acidophilum (strain

Query: 2 GGSHPAP 8
GGS P+P
Sbjct: 40 GGSSPSP 46


>sp|GLYA_METAC|SERINE hydroxymethyltransferase|Methanosarcina acetivorans (strain ATCC

Query: 3 GSHPAPSP 10
G HP+P P
Sbjct: 208 GVHPSPVP 215


>sp|Y1487_METJA|UNCHARACTERIZED methyltransferase MJ1487|Methanocaldococcus jannaschii (strain ATCC

Query: 2 GGSHPAPSP 10
GG HP P
Sbjct: 95 GGPHPTGDP 103


>sp|Y3100_HALMA|PUTATIVE heme-binding protein rrnAC3100|Haloarcula marismortui (strain ATCC

Query: 1 HGGSHPAPS 9
HGG+HP +
Sbjct: 313 HGGTHPGSA 321


>sp|CFBD_METTH|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanothermobacter

Query: 5 HPAPSP 10
HP PSP
Sbjct: 2 HPRPSP 7


>sp|THIOL_METJA|ACETYL-COA acetyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 HGGSHPAPS 9
H G +P PS
Sbjct: 70 HAGLNPIPS 78


>sp|GLYA_METTP|SERINE hydroxymethyltransferase|Methanothrix thermoacetophila (strain DSM

Query: 2 GGSHPAPSP 10
G HP+P P
Sbjct: 207 AGVHPSPIP 215


>sp|HIS6_METHJ|IMIDAZOLE glycerol phosphate synthase subunit|Methanospirillum hungatei JF-1

Query: 1 HGGSHP 6
HGGS P
Sbjct: 160 HGGSQP 165


>sp|TRPB_THEAC|TRYPTOPHAN synthase beta chain|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 GSHPAPSP 10
G+HP PSP
Sbjct: 174 GAHPHPSP 181




234|Sequence|1166|1175|PAPSPVQHHQ

>sp|BGAL_HALLT|BETA-GALACTOSIDASE Bga|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 PAPSPVQHH 9
P P+P +HH
Sbjct: 196 PGPTPAEHH 204


>sp|ARLY_METAC|ARGININOSUCCINATE lyase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PAPSPVQHH 9
PAP +QH+
Sbjct: 444 PAPEEMQHY 452


>sp|IDH_ARCFU|ISOCITRATE dehydrogenase [NADP]|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PSPVQH 8
PSP++H
Sbjct: 134 PSPIKH 139


>sp|SYFA_METHJ|PHENYLALANINE--TRNA ligase alpha subunit|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 PAPSPVQ 7
PAPSP++
Sbjct: 123 PAPSPIE 129


>sp|PURT_PYRHO|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Pyrococcus horikoshii

Query: 3 PSPVQHHQ 10
P PV H+Q
Sbjct: 227 PKPVGHYQ 234


>sp|PURT_PYRFU|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Pyrococcus furiosus

Query: 3 PSPVQHHQ 10
P PV H+Q
Sbjct: 227 PKPVGHYQ 234


>sp|PURT_PYRAB|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Pyrococcus abyssi

Query: 3 PSPVQHHQ 10
P PV H+Q
Sbjct: 227 PKPVGHYQ 234


>sp|PURT_THEKO|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Thermococcus

Query: 3 PSPVQHHQ 10
P PV H+Q
Sbjct: 227 PKPVGHYQ 234




235|Sequence|1171|1180|VQHHQHQAAQ

>sp|LYSY_PYRHO|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 3 HHQHQA 8
HH+H+A
Sbjct: 196 HHRHEA 201


>sp|LYSY_PYRAB|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 3 HHQHQA 8
HH+H+A
Sbjct: 196 HHRHEA 201


>sp|LYSY_PYRFU|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 3 HHQHQA 8
HH+H+A
Sbjct: 196 HHRHEA 201




236|Sequence|1176|1185|HQAAQALHLA

***** No hits found ******


237|Sequence|1181|1190|ALHLASPQQQ

>sp|Y531_METTH|UNCHARACTERIZED protein MTH_531|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 HLASPQQQ 10
HL SPQ Q
Sbjct: 303 HLRSPQLQ 310


>sp|MUTL_METTP|DNA mismatch repair protein MutL|Methanothrix thermoacetophila (strain

Query: 3 HLASPQQQ 10
HL+SP Q+
Sbjct: 161 HLSSPSQE 168




238|Sequence|1186|1195|SPQQQSAIYH

>sp|SYM_PICTO|METHIONINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 1 SPQQQSAIYH 10
SPQ + IYH
Sbjct: 67 SPQNVADIYH 76




239|Sequence|1191|1200|SAIYHAGLAP

>sp|PLS_PYRFU|PYROLYSIN furiosus (strain ATCC 43587

Query: 1 SAIYHAGLAP 10
+ IYH GL P
Sbjct: 267 NGIYHFGLLP 276


>sp|IORA_METTH|INDOLEPYRUVATE oxidoreductase subunit IorA|Methanothermobacter thermautotrophicus

Query: 1 SAIYHAGLAP 10
S +HAG+ P
Sbjct: 449 STFFHAGIPP 458


>sp|IORA_METTM|INDOLEPYRUVATE oxidoreductase subunit IorA|Methanothermobacter marburgensis

Query: 1 SAIYHAGLAP 10
S +HAG+ P
Sbjct: 449 STFFHAGIPP 458


>sp|TRPD_METBU|ANTHRANILATE phosphoribosyltransferase|Methanococcoides burtonii (strain DSM

Query: 1 SAIYHAGLA 9
+AIY AGLA
Sbjct: 294 AAIYVAGLA 302


>sp|OFOB1_SULTO|2-OXOACID:FERREDOXIN oxidoreductase 1, subunit beta|Sulfurisphaera tokodaii (strain DSM

Query: 1 SAIYHAGLA 9
SAI H GLA
Sbjct: 181 SAIKHKGLA 189


>sp|OFOB_SULSP|2-OXOACID:FERREDOXIN oxidoreductase subunit beta|Sulfolobus sp

Query: 1 SAIYHAGLA 9
SAI H GLA
Sbjct: 181 SAIKHKGLA 189


>sp|HELS_HALSA|ATP-DEPENDENT DNA helicase Hel308|Halobacterium salinarum (strain ATCC 700922

Query: 1 SAIYHAGLA 9
+A +HAGLA
Sbjct: 317 AAFHHAGLA 325


>sp|HELS_HALS3|ATP-DEPENDENT DNA helicase Hel308|Halobacterium salinarum (strain ATCC 29341

Query: 1 SAIYHAGLA 9
+A +HAGLA
Sbjct: 317 AAFHHAGLA 325


>sp|Y545_METJA|UNCHARACTERIZED protein MJ0545|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SAIYHAGLA 9
S +Y+AG+A
Sbjct: 72 STLYYAGVA 80


>sp|Y886_HYPBU|UPF0173 metal-dependent hydrolase Hbut_0886|Hyperthermus butylicus (strain

Query: 1 SAIYHAG 7
++IYHAG
Sbjct: 134 TSIYHAG 140


>sp|HELS_METB6|ATP-DEPENDENT DNA helicase Hel308|Methanoregula boonei (strain DSM 21154

Query: 1 SAIYHAGLA 9
+A +HAGL+
Sbjct: 299 AAFHHAGLS 307


>sp|Y3716_METBF|UPF0173 metal-dependent hydrolase Mbar_A3716|Methanosarcina barkeri (strain

Query: 2 AIYHAG 7
+IYHAG
Sbjct: 137 SIYHAG 142


>sp|Y2125_METS5|UPF0173 metal-dependent hydrolase Msed_2125|Metallosphaera sedula (strain

Query: 1 SAIYHAG 7
+ IYHAG
Sbjct: 132 TTIYHAG 138


>sp|TRUB_PYRFU|PROBABLE tRNA pseudouridine synthase B|Pyrococcus furiosus (strain ATCC

Query: 1 SAIYHAGLA 9
S I+H GLA
Sbjct: 182 SLIHHIGLA 190


>sp|HELS_HALMA|ATP-DEPENDENT DNA helicase Hel308|Haloarcula marismortui (strain ATCC 43049

Query: 1 SAIYHAGLA 9
+A +HAGL+
Sbjct: 309 AAFHHAGLS 317


>sp|TRUB_THEKO|PROBABLE tRNA pseudouridine synthase B|Thermococcus kodakarensis (strain

Query: 1 SAIYHAGLA 9
S I+H GLA
Sbjct: 182 SLIHHIGLA 190


>sp|Y1493_THEPD|UPF0173 metal-dependent hydrolase Tpen_1493|Thermofilum pendens (strain DSM

Query: 1 SAIYHAG 7
+A+YHAG
Sbjct: 133 TAVYHAG 139


>sp|TRUB_PYRHO|PROBABLE tRNA pseudouridine synthase B|Pyrococcus horikoshii (strain ATCC

Query: 1 SAIYHAGLA 9
S I+H GLA
Sbjct: 182 SLIHHIGLA 190




240|Sequence|1196|1205|AGLAPTPPSM

>sp|EF2_CENSY|ELONGATION factor 2|Cenarchaeum symbiosum (strain A)

Query: 2 GLAPTPPSM 10
GLAP PP++
Sbjct: 715 GLAPDPPTV 723


>sp|Y779_METJA|UNCHARACTERIZED protein MJ0779|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AGLAPTPP 8
+G+AP PP
Sbjct: 229 SGVAPIPP 236


>sp|GLMM_PYRFU|PROBABLE phosphoglucosamine mutase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 GLAPTP 7
GLAPTP
Sbjct: 71 GLAPTP 76


>sp|PGMUT_SULTO|PHOSPHOGLUCOSAMINE/PHOSPHOGALACTOSAMINE mutase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 AGLAPTP 7
G+APTP
Sbjct: 71 GGMAPTP 77


>sp|GLMM_PYRHO|PROBABLE phosphoglucosamine mutase|Pyrococcus horikoshii (strain ATCC

Query: 2 GLAPTP 7
GLAPTP
Sbjct: 71 GLAPTP 76


>sp|Y903_METJA|UNCHARACTERIZED protein MJ0903|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AGLAPTPPS 9
+GL P PP+
Sbjct: 78 SGLIPLPPN 86


>sp|CBIA_METJA|COBYRINATE a,c-diamide synthase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 GLAPTPPSM 10
GL PTP ++
Sbjct: 192 GLVPTPENL 200


>sp|PGMMM_THEKO|PHOSPHOGLUCOMUTASE/PHOSPHOMANNOMUTASE kodakarensis (strain ATCC BAA-918

Query: 2 GLAPTP 7
G+APTP
Sbjct: 76 GIAPTP 81


>sp|GLMM_PYRAB|PROBABLE phosphoglucosamine mutase|Pyrococcus abyssi (strain GE5 /

Query: 2 GLAPTP 7
GLAPTP
Sbjct: 71 GLAPTP 76


>sp|PANB_HYPBU|3-METHYL-2-OXOBUTANOATE hydroxymethyltransferase|Hyperthermus butylicus (strain DSM 5456

Query: 2 GLAPTPP 8
GL PTPP
Sbjct: 224 GLTPTPP 230


>sp|GLMM_THEGJ|PROBABLE phosphoglucosamine mutase|Thermococcus gammatolerans (strain DSM

Query: 2 GLAPTP 7
GLAPTP
Sbjct: 71 GLAPTP 76


>sp|GLMM_THEON|PROBABLE phosphoglucosamine mutase|Thermococcus onnurineus (strain NA1)

Query: 2 GLAPTP 7
GLAPTP
Sbjct: 71 GLAPTP 76


>sp|GLMM_THEKO|PROBABLE phosphoglucosamine mutase|Thermococcus kodakarensis (strain ATCC

Query: 2 GLAPTP 7
GLAPTP
Sbjct: 71 GLAPTP 76


>sp|AROE_ARCFU|SHIKIMATE dehydrogenase (NADP(+))|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 PTPPSM 10
P PPSM
Sbjct: 196 PVPPSM 201


>sp|SYM_PYRAR|METHIONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 AGLAPTPP 8
AGLAP P
Sbjct: 491 AGLAPVVP 498




241|Sequence|1201|1210|TPPSMTPASN

>sp|BGAL_HALL2|BETA-GALACTOSIDASE BgaH|Haloferax lucentense (strain DSM 14919

Query: 2 PPSMTPASN 10
PP TPA+N
Sbjct: 195 PPKPTPAAN 203


>sp|MPTA_PYRHO|GTP cyclohydrolase MptA|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 MTPASN 10
MTPASN
Sbjct: 120 MTPASN 125




242|Sequence|1206|1215|TPASNTQSPQ

>sp|DPOL_METVO|DNA polymerase|Methanococcus voltae

Query: 3 ASNTQSPQ 10
ASN+Q PQ
Sbjct: 277 ASNSQQPQ 284




243|Sequence|1211|1220|TQSPQNSFPA

>sp|HCP_METMA|HYDROXYLAMINE reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 PQNSFPA 10
P NS+PA
Sbjct: 263 PANSYPA 269




244|Sequence|1216|1225|NSFPAAQQTV

>sp|AROC_HALMD|CHORISMATE synthase|Halomicrobium mukohataei (strain ATCC 700874

Query: 2 SFPAAQQTV 10
SFP Q+TV
Sbjct: 323 SFPKTQETV 331




245|Sequence|1221|1230|AQQTVFTIHP

>sp|OFOA_SACSO|2-OXOACID:FERREDOXIN oxidoreductase subunit alpha|Saccharolobus solfataricus (Sulfolobus

Query: 1 AQQTVFTIHP 10
A QTVFT+ P
Sbjct: 268 AHQTVFTVDP 277


>sp|FLAH_SULAC|ARCHAEAL flagellar ATP-binding protein FlaH|Sulfolobus acidocaldarius

Query: 1 AQQTVFTIHP 10
+ +FTIHP
Sbjct: 150 GKMILFTIHP 159


>sp|PPSA_AERPE|PHOSPHOENOLPYRUVATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 5 VFTIHP 10
+FTIHP
Sbjct: 199 MFTIHP 204


>sp|HTPX_PYRCJ|PROTEASE HtpX homolog|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 AQQTVFTIHP 10
A Q VF+ HP
Sbjct: 321 ALQEVFSTHP 330


>sp|PPSA_METTH|PROBABLE phosphoenolpyruvate synthase|Methanothermobacter thermautotrophicus

Query: 5 VFTIHP 10
+FT+HP
Sbjct: 225 MFTVHP 230




246|Sequence|1226|1235|FTIHPSHVQP

>sp|Y609_METJA|UNCHARACTERIZED protein MJ0609|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 TIHPSHVQP 10
TIHPS+V P
Sbjct: 172 TIHPSYVIP 180


>sp|SYI_META3|ISOLEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 FTIHPSHVQ 9
FTI P HV+
Sbjct: 919 FTIKPEHVE 927


>sp|RRP41_THEON|EXOSOME complex component Rrp41|Thermococcus onnurineus (strain NA1)

Query: 3 IHPSHVQ 9
IHP H+Q
Sbjct: 62 IHPKHLQ 68


>sp|RRP41_THEKO|EXOSOME complex component Rrp41|Thermococcus kodakarensis (strain ATCC

Query: 3 IHPSHVQ 9
IHP H+Q
Sbjct: 62 IHPKHLQ 68


>sp|RRP41_THEGJ|EXOSOME complex component Rrp41|Thermococcus gammatolerans (strain DSM

Query: 3 IHPSHVQ 9
IHP H+Q
Sbjct: 62 IHPKHLQ 68


>sp|RRP41_PYRFU|EXOSOME complex component Rrp41|Pyrococcus furiosus (strain ATCC 43587

Query: 3 IHPSHVQ 9
IHP H+Q
Sbjct: 62 IHPKHLQ 68


>sp|PPSA_METTH|PROBABLE phosphoenolpyruvate synthase|Methanothermobacter thermautotrophicus

Query: 1 FTIHPS 6
FT+HPS
Sbjct: 226 FTVHPS 231


>sp|Y3058_HALWD|PUTATIVE HTH-type transcriptional regulatory protein|Haloquadratum walsbyi

Query: 1 FTIHPSHVQP 10
FT+HP+ P
Sbjct: 223 FTVHPTARAP 232


>sp|Y273_HALLT|PUTATIVE HTH-type transcriptional regulatory protein|Halorubrum

Query: 1 FTIHPSHVQP 10
FT+HP+ P
Sbjct: 223 FTVHPTARAP 232


>sp|RBL_THEKO|RIBULOSE bisphosphate carboxylase|Thermococcus kodakarensis (strain ATCC

Query: 3 IHPSHVQP 10
+HP ++QP
Sbjct: 370 LHPGNIQP 377


>sp|PURL_METMA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 HPSHVQP 10
HPS+V P
Sbjct: 81 HPSYVDP 87


>sp|PURL_METBF|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanosarcina barkeri (strain Fusaro /

Query: 4 HPSHVQP 10
HPS+V P
Sbjct: 81 HPSYVDP 87


>sp|PURL_METAC|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanosarcina acetivorans (strain ATCC

Query: 4 HPSHVQP 10
HPS+V P
Sbjct: 81 HPSYVDP 87


>sp|PURL_HALSA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Halobacterium salinarum (strain ATCC 700922

Query: 4 HPSHVQP 10
HPS+V P
Sbjct: 83 HPSYVDP 89


>sp|PURL_HALS3|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Halobacterium salinarum (strain ATCC 29341

Query: 4 HPSHVQP 10
HPS+V P
Sbjct: 83 HPSYVDP 89


>sp|PURL_HALMA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Haloarcula marismortui (strain ATCC 43049

Query: 4 HPSHVQP 10
HPS+V P
Sbjct: 87 HPSYVDP 93


>sp|PURL_METKA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanopyrus kandleri (strain AV19 /

Query: 4 HPSHVQP 10
HPS+V P
Sbjct: 82 HPSYVDP 88


>sp|RIBL_FERPA|FAD synthase|Ferroglobus placidus (strain DSM 10642

Query: 3 IHPSHVQ 9
IHP HV+
Sbjct: 13 IHPGHVR 19


>sp|ILVC_HALWD|KETOL-ACID reductoisomerase (NADP(+))|Haloquadratum walsbyi (strain DSM 16790

Query: 1 FTIHPSHVQP 10
F IH + +QP
Sbjct: 133 FNIHYNQIQP 142


>sp|CSG_HALJT|CELL surface glycoprotein|Haloarcula japonica (strain ATCC 49778

Query: 1 FTIHPSHV 8
FTI+PS+V
Sbjct: 226 FTINPSNV 233


>sp|PURL_NATPD|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Natronomonas pharaonis (strain ATCC 35678

Query: 4 HPSHVQP 10
HPS+V P
Sbjct: 89 HPSYVDP 95


>sp|RRP41_ARCFU|EXOSOME complex component Rrp41|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 IHPSHVQ 9
+HP H+Q
Sbjct: 62 VHPRHLQ 68


>sp|PURL_HALWD|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Haloquadratum walsbyi (strain DSM 16790

Query: 4 HPSHVQP 10
HPS+V P
Sbjct: 97 HPSYVDP 103


>sp|PURL_THEVO|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermoplasma volcanium (strain ATCC 51530

Query: 4 HPSHVQP 10
HPS V+P
Sbjct: 111 HPSAVEP 117


>sp|PURL_THESM|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermococcus sibiricus (strain DSM 12597

Query: 4 HPSHVQP 10
HPS V+P
Sbjct: 80 HPSAVEP 86


>sp|PURL_THEAC|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 HPSHVQP 10
HPS V+P
Sbjct: 111 HPSAVEP 117


>sp|PURL_PYRHO|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 HPSHVQP 10
HPS V+P
Sbjct: 80 HPSAVEP 86


>sp|PURL_PYRAB|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrococcus abyssi (strain GE5 /

Query: 4 HPSHVQP 10
HPS V+P
Sbjct: 80 HPSAVEP 86


>sp|PURL_PICTO|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Picrophilus torridus (strain ATCC 700027

Query: 4 HPSHVQP 10
HPS V+P
Sbjct: 104 HPSAVEP 110


>sp|RFCS_HALWD|REPLICATION factor C small subunit|Haloquadratum walsbyi (strain DSM 16790

Query: 4 HPSHV 8
HPSHV
Sbjct: 110 HPSHV 114


>sp|THIL_NITMS|THIAMINE-MONOPHOSPHATE kinase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 FTIHPSH 7
FTI+P H
Sbjct: 257 FTINPKH 263


>sp|PURL_THEKO|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermococcus kodakarensis (strain ATCC

Query: 4 HPSHVQP 10
HPS V+P
Sbjct: 80 HPSAVEP 86


>sp|PURL_METST|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanosphaera stadtmanae (strain ATCC

Query: 4 HPSHVQP 10
HPS V+P
Sbjct: 82 HPSAVEP 88


>sp|RRP41_PYRAB|EXOSOME complex component Rrp41|Pyrococcus abyssi (strain GE5 /

Query: 3 IHPSHVQ 9
+HP H+Q
Sbjct: 62 LHPKHLQ 68


>sp|PURL_THEGJ|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermococcus gammatolerans (strain DSM

Query: 4 HPSHVQP 10
HPS V+P
Sbjct: 80 HPSAVEP 86


>sp|PURL_PYRFU|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrococcus furiosus (strain ATCC 43587

Query: 4 HPSHVQP 10
HPS V+P
Sbjct: 80 HPSAVEP 86


>sp|PPSA_AERPE|PHOSPHOENOLPYRUVATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 1 FTIHP 5
FTIHP
Sbjct: 200 FTIHP 204


>sp|FLAH_SULAC|ARCHAEAL flagellar ATP-binding protein FlaH|Sulfolobus acidocaldarius

Query: 1 FTIHP 5
FTIHP
Sbjct: 155 FTIHP 159


>sp|NNR_HYPBU|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Hyperthermus butylicus (strain

Query: 3 IHPSHVQ 9
IHP HV+
Sbjct: 306 IHPDHVK 312


>sp|AOCD_METMP|ORNITHINE cyclodeaminase|Methanococcus maripaludis (strain DSM 14266

Query: 2 TIHPSHVQ 9
T HP+HV+
Sbjct: 100 TNHPTHVK 107


>sp|RL24_PYRHO|LARGE ribosomal subunit protein uL24|Pyrococcus horikoshii (strain ATCC

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 93 YPIHPSNV 100


>sp|RL24_PYRAB|LARGE ribosomal subunit protein uL24|Pyrococcus abyssi (strain GE5 /

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 93 YPIHPSNV 100


>sp|RL24_METMP|LARGE ribosomal subunit protein uL24|Methanococcus maripaludis (strain

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 94 YPIHPSNV 101


>sp|RL24_METM7|LARGE ribosomal subunit protein uL24|Methanococcus maripaludis (strain C7

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 94 YPIHPSNV 101


>sp|RL24_METM5|LARGE ribosomal subunit protein uL24|Methanococcus maripaludis (strain C5

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 94 YPIHPSNV 101


>sp|RL24_METJA|LARGE ribosomal subunit protein uL24|Methanocaldococcus jannaschii

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 94 YPIHPSNV 101


>sp|RL24_META3|LARGE ribosomal subunit protein uL24|Methanococcus aeolicus (strain ATCC

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 94 YPIHPSNV 101


>sp|RL24_HYPBU|LARGE ribosomal subunit protein uL24|Hyperthermus butylicus (strain DSM

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 94 YPIHPSNV 101


>sp|RL24_PYRFU|LARGE ribosomal subunit protein uL24|Pyrococcus furiosus (strain ATCC

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 93 YPIHPSNV 100


>sp|RL24_METVS|LARGE ribosomal subunit protein uL24|Methanococcus vannielii (strain ATCC

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 94 YPIHPSNV 101


>sp|RL24_METVA|LARGE ribosomal subunit protein uL24|Methanococcus vannielii

Query: 1 FTIHPSHV 8
+ IHPS+V
Sbjct: 94 YPIHPSNV 101


>sp|Y3539_METJA|UPF0252 protein MJECL39|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FTIHPSHV 8
F ++P+HV
Sbjct: 183 FLVYPTHV 190


>sp|RIBL_ARCPA|FAD synthase|Archaeoglobus profundus (strain DSM 5631

Query: 3 IHPSHVQ 9
IHP H++
Sbjct: 13 IHPGHIR 19


>sp|MTHZ_METTF|TYPE II methyltransferase M.MthZI|Methanothermobacter thermautotrophicus

Query: 1 FTIHPSHVQ 9
F ++P+HV+
Sbjct: 102 FQLYPNHVR 110


>sp|RIBL_ARCFU|FAD synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 IHPSHV 8
IHP H+
Sbjct: 9 IHPGHI 14




247|Sequence|1231|1240|SHVQPAYTNP

>sp|DTDA_THEON|D-AMINOACYL-TRNA deacylase|Thermococcus onnurineus (strain NA1)

Query: 1 SHVQPAYTNP 10
SH+ P Y +P
Sbjct: 214 SHIAPKYVHP 223


>sp|Y2548_METHJ|PUTATIVE HTH-type transcriptional regulatory protein|Methanospirillum

Query: 2 HVQPAYTNP 10
HVQP Y P
Sbjct: 219 HVQPMYHAP 227


>sp|DTDA_PYRFU|D-AMINOACYL-TRNA deacylase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 SHVQPAYTNP 10
SH+ P Y P
Sbjct: 212 SHILPKYAQP 221


>sp|THI4_PYRIL|THIAMINE thiazole synthase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 SHVQPAYT 8
SHV P YT
Sbjct: 151 SHVDPLYT 158


>sp|MTSA_METMA|METHYLATED-THIOL--COENZYME M methyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 PAYTNP 10
PAYTNP
Sbjct: 100 PAYTNP 105


>sp|THI4_PYRNV|THIAMINE thiazole synthase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 SHVQPAYT 8
SHV P YT
Sbjct: 151 SHVDPLYT 158


>sp|Y3508_METJA|PROBABLE helicase MJECL08|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SHVQPAYTNP 10
+H+ PA NP
Sbjct: 210 THILPAKLNP 219


>sp|DTDA_THEKO|D-AMINOACYL-TRNA deacylase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 HVQPAYTNP 10
H+ P Y +P
Sbjct: 215 HIAPKYAHP 223


>sp|COFG_METS3|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 SHVQPAYTNP 10
S V P Y NP
Sbjct: 281 SPVSPDYVNP 290


>sp|ILVD_NATPD|DIHYDROXY-ACID dehydratase|Natronomonas pharaonis (strain ATCC 35678

Query: 4 QPAYTN 9
+PAYTN
Sbjct: 560 EPAYTN 565


>sp|THI4_PYRCJ|THIAMINE thiazole synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 HVQPAYT 8
HV P YT
Sbjct: 152 HVDPLYT 158


>sp|THI4_PYRAR|THIAMINE thiazole synthase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 HVQPAYT 8
HV P YT
Sbjct: 152 HVDPLYT 158


>sp|THI4_PYRAE|THIAMINE thiazole synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 HVQPAYT 8
HV P YT
Sbjct: 152 HVDPLYT 158


>sp|MTSA_METBA|METHYLATED-THIOL--COENZYME M methyltransferase|Methanosarcina barkeri

Query: 5 PAYTNP 10
PAYT+P
Sbjct: 100 PAYTDP 105




248|Sequence|1236|1245|AYTNPPHMAH

>sp|SAT_CENSY|SULFATE adenylyltransferase|Cenarchaeum symbiosum (strain A)

Query: 4 NPPHMAH 10
NPPH+AH
Sbjct: 191 NPPHVAH 197


>sp|SAT_NITMS|SULFATE adenylyltransferase|Nitrosopumilus maritimus (strain SCM1)

Query: 4 NPPHMAH 10
NPPH+AH
Sbjct: 192 NPPHVAH 198


>sp|MTAP_NITMS|S-METHYL-5'-THIOADENOSINE phosphorylase|Nitrosopumilus maritimus (strain SCM1)

Query: 2 YTNPPHM 8
+T PPHM
Sbjct: 60 HTIPPHM 66


>sp|FEN_PICTO|FLAP endonuclease 1|Picrophilus torridus (strain ATCC 700027

Query: 2 YTNPPH 7
+ NPPH
Sbjct: 280 FMNPPH 285


>sp|GPMI_METMA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 AYTNPPHMAH 10
++T PH AH
Sbjct: 461 SHTGEPHTAH 470


>sp|KAE1_METKA|TRNA N6-adenosine threonylcarbamoyltransferase|Methanopyrus kandleri

Query: 1 AYTNPPHMA 9
AYT PP +A
Sbjct: 281 AYTVPPELA 289


>sp|SYR_THESM|ARGININE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 3 TNPPHMAH 10
T P HM H
Sbjct: 137 TKPLHMGH 144


>sp|SYR_THEKO|ARGININE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 TNPPHMAH 10
T P HM H
Sbjct: 136 TKPLHMGH 143


>sp|SYR_PYRHO|ARGININE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 TNPPHMAH 10
T P HM H
Sbjct: 131 TKPLHMGH 138


>sp|SYR_PYRFU|ARGININE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 TNPPHMAH 10
T P HM H
Sbjct: 131 TKPLHMGH 138


>sp|SYR_PYRAB|ARGININE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 3 TNPPHMAH 10
T P HM H
Sbjct: 131 TKPLHMGH 138


>sp|DHE3_THELN|GLUTAMATE dehydrogenase|Thermococcus litoralis (strain ATCC 51850

Query: 2 YTNPPHMA 9
YTNP MA
Sbjct: 147 YTNPQIMA 154


>sp|DHE3_PYRHR|GLUTAMATE dehydrogenase|Pyrococcus horikoshii

Query: 2 YTNPPHMA 9
YTNP MA
Sbjct: 147 YTNPQIMA 154


>sp|DHE3_PYRHO|GLUTAMATE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 YTNPPHMA 9
YTNP MA
Sbjct: 147 YTNPQIMA 154


>sp|DHE3_PYRFU|GLUTAMATE dehydrogenase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 YTNPPHMA 9
YTNP MA
Sbjct: 147 YTNPQIMA 154


>sp|DHE3_PYREN|GLUTAMATE dehydrogenase|Pyrococcus endeavori

Query: 2 YTNPPHMA 9
YTNP MA
Sbjct: 147 YTNPQIMA 154


>sp|DHE3_PYRAB|GLUTAMATE dehydrogenase|Pyrococcus abyssi (strain GE5 /

Query: 2 YTNPPHMA 9
YTNP MA
Sbjct: 147 YTNPQIMA 154


>sp|GPMI2_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanosarcina acetivorans (strain ATCC

Query: 2 YTNPPHMAH 10
+T PH AH
Sbjct: 462 HTGEPHTAH 470


>sp|MTXH_METAC|PUTATIVE methyltransferase mtx subunit H|Methanosarcina acetivorans

Query: 3 TNPPHMAH 10
T PHM H
Sbjct: 68 TGNPHMVH 75


>sp|DHE3_THEKO|GLUTAMATE dehydrogenase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 YTNPPHMA 9
YTNP MA
Sbjct: 147 YTNPKIMA 154


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 1 AYTNPPH 7
AY NP H
Sbjct: 204 AYLNPDH 210


>sp|GPMI1_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 1|Methanosarcina acetivorans (strain ATCC

Query: 3 TNPPHMAH 10
T PH AH
Sbjct: 457 TGEPHTAH 464


>sp|RL24_PYRIL|LARGE ribosomal subunit protein uL24|Pyrobaculum islandicum (strain DSM

Query: 2 YTNPPHMAH 10
YT P H+ H
Sbjct: 17 YTAPLHLRH 25


>sp|MTXH_METMA|PUTATIVE methyltransferase mtx subunit H|Methanosarcina mazei (strain ATCC

Query: 3 TNPPHMAH 10
T PHM H
Sbjct: 68 TGNPHMVH 75


>sp|Y756_METJA|UNCHARACTERIZED protein MJ0756|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AYTNPPHMAH 10
AY PP MA+
Sbjct: 17 AYAFPPWMAY 26


>sp|GPMI2_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanosarcina barkeri (strain Fusaro /

Query: 3 TNPPHMAH 10
T PH AH
Sbjct: 467 TGEPHTAH 474


>sp|GPMI1_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 1|Methanosarcina barkeri (strain Fusaro /

Query: 3 TNPPHMAH 10
T PH AH
Sbjct: 460 TEEPHTAH 467




249|Sequence|1241|1250|PHMAHVPQAH

>sp|GLKA_THEKO|ADP-DEPENDENT glucose/glucosamine kinase|Thermococcus kodakarensis (strain ATCC

Query: 1 PHMAHVPQ 8
P +AHVPQ
Sbjct: 127 PVIAHVPQ 134


>sp|GLKA_PYRHO|ADP-DEPENDENT glucose/glucosamine kinase|Pyrococcus horikoshii (strain ATCC

Query: 1 PHMAHVPQ 8
P +AHVPQ
Sbjct: 131 PVIAHVPQ 138


>sp|GLKA_PYRAB|ADP-DEPENDENT glucose/glucosamine kinase|Pyrococcus abyssi (strain GE5 /

Query: 1 PHMAHVPQ 8
P +AHVPQ
Sbjct: 127 PVIAHVPQ 134


>sp|RL4_HALSA|LARGE ribosomal subunit protein uL4|Halobacterium salinarum (strain

Query: 3 MAHVPQAH 10
MAHVP+A+
Sbjct: 67 MAHVPKAN 74


>sp|RL4_HALS3|LARGE ribosomal subunit protein uL4|Halobacterium salinarum (strain

Query: 3 MAHVPQAH 10
MAHVP+A+
Sbjct: 67 MAHVPKAN 74


>sp|PELO_METVS|PROTEIN pelota homolog|Methanococcus vannielii (strain ATCC 35089

Query: 2 HMAHVPQAH 10
H++H+ QA+
Sbjct: 25 HLSHIVQAY 33


>sp|MTXH_METAC|PUTATIVE methyltransferase mtx subunit H|Methanosarcina acetivorans

Query: 1 PHMAHV 6
PHM H+
Sbjct: 71 PHMVHI 76


>sp|SYE_METBU|GLUTAMATE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PHMAHVPQAH 10
PH H P+ +
Sbjct: 218 PHRGHAPEVN 227


>sp|MTXH_METMA|PUTATIVE methyltransferase mtx subunit H|Methanosarcina mazei (strain ATCC

Query: 1 PHMAHV 6
PHM H+
Sbjct: 71 PHMVHI 76




250|Sequence|1246|1255|VPQAHVQSGM

>sp|PUR2_METTH|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 PQAHVQSGM 10
P+AH+++G+
Sbjct: 69 PEAHLEAGL 77


>sp|END4_METST|PROBABLE endonuclease 4|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 PQAHVQSGM 10
P +HVQ G+
Sbjct: 108 PGSHVQQGV 116


>sp|SYM_METPE|METHIONINE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 VPQAHVQSGM 10
VP A V SGM
Sbjct: 310 VPSAIVASGM 319




251|Sequence|1251|1260|VQSGMVPSHP

>sp|UPPS_PYRHO|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Pyrococcus

Query: 1 VQSGMVPSH 9
V+SG++P H
Sbjct: 29 VKSGVLPKH 37


>sp|UPPS_THEKO|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Thermococcus

Query: 1 VQSGMVPSH 9
V+SG +P H
Sbjct: 29 VKSGNIPKH 37


>sp|AROA_METS3|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanobrevibacter smithii (strain ATCC

Query: 1 VQSGMVPSH 9
++SG+V SH
Sbjct: 383 IRSGVVDSH 391




252|Sequence|1256|1265|VPSHPTAHAP

>sp|SYE_METMA|GLUTAMATE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 VPSHPTAHA 9
VP HPT HA
Sbjct: 439 VPRHPTDHA 447


>sp|TRM1_THEON|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermococcus onnurineus

Query: 1 VPSHPTAHAP 10
+PS TAH P
Sbjct: 265 LPSKATAHGP 274


>sp|Y3058_HALWD|PUTATIVE HTH-type transcriptional regulatory protein|Haloquadratum walsbyi

Query: 4 HPTAHAP 10
HPTA AP
Sbjct: 226 HPTARAP 232


>sp|THII_METTH|PROBABLE tRNA sulfurtransferase|Methanothermobacter thermautotrophicus

Query: 1 VPSHPTAHAP 10
VP+HP+ +P
Sbjct: 349 VPAHPSTASP 358


>sp|TRM1_PYRAB|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrococcus abyssi (strain

Query: 1 VPSHPTAHAP 10
+PS P A+ P
Sbjct: 266 LPSKPNAYGP 275


>sp|TOP3_SACS2|DNA topoisomerase 3|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 HPTAHAP 10
HPT AP
Sbjct: 375 HPTGEAP 381


>sp|PGMMM_THEKO|PHOSPHOGLUCOMUTASE/PHOSPHOMANNOMUTASE kodakarensis (strain ATCC BAA-918

Query: 1 VPSHPTAHAP 10
V +HP H P
Sbjct: 204 VNAHPDGHFP 213


>sp|SYE_METAC|GLUTAMATE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 VPSHPTAHA 9
+P HPT H+
Sbjct: 439 LPLHPTDHS 447


>sp|Y1320_NATPD|PUTATIVE HTH-type transcriptional regulatory protein|Natronomonas pharaonis

Query: 4 HPTAHAP 10
HPT AP
Sbjct: 226 HPTMQAP 232


>sp|Y273_HALLT|PUTATIVE HTH-type transcriptional regulatory protein|Halorubrum

Query: 4 HPTAHAP 10
HPTA AP
Sbjct: 226 HPTARAP 232


>sp|MVHA_METTM|F420-NON-REDUCING hydrogenase subunit A|Methanothermobacter marburgensis (strain ATCC

Query: 2 PSHPTAHAP 10
P HPT+ P
Sbjct: 162 PIHPTSSTP 170


>sp|QUEC_METKA|7-CYANO-7-DEAZAGUANINE synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 VPSHPTAHAP 10
+PS P H+P
Sbjct: 155 LPSRPRLHSP 164


>sp|MVHA_METTH|F420-NON-REDUCING hydrogenase subunit A|Methanothermobacter thermautotrophicus

Query: 2 PSHPTAHAP 10
P HPT+ P
Sbjct: 162 PIHPTSSTP 170


>sp|PYRE_CENSY|OROTATE phosphoribosyltransferase|Cenarchaeum symbiosum (strain A)

Query: 1 VPSHP 5
VPSHP
Sbjct: 39 VPSHP 43


>sp|SYE_METBF|GLUTAMATE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 VPSHPTAH 8
+P HPT H
Sbjct: 439 LPLHPTDH 446


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 VPSHPTAHAP 10
VPS PT AP
Sbjct: 483 VPSFPTWLAP 492


>sp|RL10_THEKO|LARGE ribosomal subunit protein uL10|Thermococcus kodakarensis (strain

Query: 1 VPSHPTAHAP 10
+P+ PT+ AP
Sbjct: 123 IPAGPTSLAP 132




253|Sequence|1261|1270|TAHAPMMLMT

>sp|TRPF_METTP|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 TAHAPMML 8
T HAP++L
Sbjct: 152 TLHAPLIL 159


>sp|MEND_NATPD|2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 TAHAPMMLMT 10
TA PM+L+T
Sbjct: 95 TARVPMVLLT 104




254|Sequence|1266|1275|MMLMTTQPPG

>sp|NADK_METST|NAD kinase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 MMLMTTQP 8
++LMT+QP
Sbjct: 137 LVLMTSQP 144




255|Sequence|1271|1280|TQPPGGPQAA

>sp|SYM_PYRCJ|METHIONINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 PPGGPQ 8
PPG PQ
Sbjct: 410 PPGTPQ 415


>sp|PGP_AERPE|PHOSPHOGLYCOLATE phosphatase|Aeropyrum pernix (strain ATCC 700893

Query: 1 TQPPGGPQA 9
QPPGG +A
Sbjct: 153 IQPPGGGKA 161


>sp|SRP54_HALVD|SIGNAL recognition particle 54 kDa|Haloferax volcanii (strain ATCC 29605

Query: 2 QPPGGPQA 9
+PPGG A
Sbjct: 64 EPPGGTSA 71


>sp|MTNA_AERPE|PUTATIVE methylthioribose-1-phosphate isomerase|Aeropyrum pernix (strain

Query: 2 QPPGGPQA 9
QP GP+A
Sbjct: 296 QPDAGPEA 303


>sp|SRP54_HALLT|SIGNAL recognition particle 54 kDa|Halorubrum lacusprofundi (strain ATCC

Query: 2 QPPGGPQA 9
+PPGG A
Sbjct: 64 EPPGGTTA 71




256|Sequence|1276|1285|GPQAALAQSA

>sp|COFD_METB6|2-PHOSPHO-L-LACTATE transferase|Methanoregula boonei (strain DSM 21154

Query: 1 GPQAALAQSA 10
GP AAL Q++
Sbjct: 231 GPAAALMQAS 240




257|Sequence|1281|1290|LAQSALQPIP

>sp|Y998_META3|DNA-BINDING protein Maeo_0998|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 LAQSALQPIP 10
LAQS PIP
Sbjct: 80 LAQSGRLPIP 89




258|Sequence|1286|1295|LQPIPVSTTA

>sp|HELS_METB6|ATP-DEPENDENT DNA helicase Hel308|Methanoregula boonei (strain DSM 21154

Query: 1 LQPIPVS 7
+QPIPVS
Sbjct: 357 MQPIPVS 363


>sp|CARB_HALSA|CARBAMOYL phosphate synthase large chain|Halobacterium salinarum (strain ATCC

Query: 2 QPIPVSTT 9
QP+P STT
Sbjct: 139 QPVPASTT 146


>sp|MOAC_PYRAE|PROBABLE cyclic pyranopterin monophosphate synthase|Pyrobaculum aerophilum

Query: 1 LQPIPVSTTA 10
L P+P+S TA
Sbjct: 45 LHPLPLSATA 54


>sp|RPIA_HALWD|RIBOSE-5-PHOSPHATE isomerase A|Haloquadratum walsbyi (strain DSM 16790

Query: 2 QPIPVST 8
+P+PVST
Sbjct: 134 EPVPVST 140


>sp|RPO1C_THEON|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus onnurineus (strain NA1)

Query: 2 QPIPVST 8
QP+PV T
Sbjct: 369 QPVPVGT 375


>sp|RPO1C_THEGJ|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus gammatolerans (strain DSM

Query: 2 QPIPVST 8
QP+PV T
Sbjct: 369 QPVPVGT 375


>sp|RPO1C_PYRAB|DNA-DIRECTED RNA polymerase subunit Rpo1C|Pyrococcus abyssi (strain GE5 /

Query: 2 QPIPVST 8
QP+PV T
Sbjct: 371 QPVPVGT 377


>sp|RPO1C_PYRFU|DNA-DIRECTED RNA polymerase subunit Rpo1C|Pyrococcus furiosus (strain ATCC 43587

Query: 2 QPIPVST 8
QP+PV T
Sbjct: 371 QPVPVGT 377


>sp|RPO1C_PYRHO|DNA-DIRECTED RNA polymerase subunit Rpo1C|Pyrococcus horikoshii (strain ATCC

Query: 2 QPIPVST 8
QP+PV T
Sbjct: 371 QPVPVGT 377


>sp|RPO1C_THEKO|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus kodakarensis (strain ATCC

Query: 2 QPIPVST 8
QP+PV T
Sbjct: 369 QPVPVGT 375


>sp|RPO1C_THECE|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus celer

Query: 2 QPIPVST 8
QP+PV T
Sbjct: 371 QPVPVGT 377


>sp|HPCAS_SULTO|3-HYDROXYPROPIONYL-COENZYME A synthetase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LQPIPVSTT 9
++P+PV T
Sbjct: 249 IEPVPVEAT 257




259|Sequence|1291|1300|VSTTAHFPYM

>sp|END4_NITMS|PROBABLE endonuclease 4|Nitrosopumilus maritimus (strain SCM1)

Query: 2 STTAHFPYM 10
+T AH PY+
Sbjct: 64 ATCAHMPYL 72


>sp|ARGC_METLZ|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 VSTTAHFP 8
+S T HFP
Sbjct: 177 ISETTHFP 184


>sp|NADK_PYRFU|NAD kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 TTAHFPY 9
T HFPY
Sbjct: 38 TYEHFPY 44




260|Sequence|1296|1305|HFPYMTHPSV

>sp|SYS_PYRHO|SERINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 FPYMTHPSV 10
P +THPSV
Sbjct: 106 LPNITHPSV 114


>sp|SYS_PYRFU|SERINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 FPYMTHPSV 10
P +THPSV
Sbjct: 106 LPNITHPSV 114


>sp|SYS_PYRAB|SERINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 FPYMTHPSV 10
P +THPSV
Sbjct: 106 LPNITHPSV 114


>sp|SPEE_METJA|POLYAMINE aminopropyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 HFPYMTHPS 9
H P THP+
Sbjct: 75 HIPLFTHPN 83


>sp|HPRT_ACIB4|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Aciduliprofundum boonei (strain DSM

Query: 1 HFPYMTHP 8
++PY HP
Sbjct: 18 NYPYFIHP 25


>sp|HPRT_METMS|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanohalophilus mahii (strain ATCC

Query: 2 FPYMTHP 8
+PY HP
Sbjct: 20 YPYFIHP 26


>sp|HPRT_METBU|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanococcoides burtonii (strain DSM

Query: 2 FPYMTHP 8
+PY HP
Sbjct: 20 YPYFIHP 26


>sp|HPRT_FERPA|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Ferroglobus placidus (strain DSM 10642

Query: 2 FPYMTHP 8
+PY HP
Sbjct: 20 YPYFIHP 26


>sp|GCH1L_PYRHO|GTP cyclohydrolase 1 type 2|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 HFPYMTHPSV 10
H P HP V
Sbjct: 96 HLPLDAHPEV 105


>sp|RL24_METJA|LARGE ribosomal subunit protein uL24|Methanocaldococcus jannaschii

Query: 3 PYMTHPS 9
PY HPS
Sbjct: 93 PYPIHPS 99


>sp|PURO_METTP|IMP cyclohydrolase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 PYMTHPSV 10
PY+T+P +
Sbjct: 53 PYITYPCI 60


>sp|Y006_METJA|UNCHARACTERIZED oxidoreductase MJ0006|Methanocaldococcus jannaschii (strain ATCC

Query: 2 FPYMTHP 8
+PY HP
Sbjct: 30 YPYKRHP 36


>sp|RL24_METVS|LARGE ribosomal subunit protein uL24|Methanococcus vannielii (strain

Query: 3 PYMTHPS 9
PY HPS
Sbjct: 93 PYPIHPS 99


>sp|RL24_METVA|LARGE ribosomal subunit protein uL24|Methanococcus vannielii

Query: 3 PYMTHPS 9
PY HPS
Sbjct: 93 PYPIHPS 99


>sp|GCH1L_PYRAB|GTP cyclohydrolase 1 type 2|Pyrococcus abyssi (strain GE5 /

Query: 1 HFPYMTHPSV 10
H P HP V
Sbjct: 96 HIPLDVHPEV 105


>sp|TSGCD_HALVD|PUTATIVE glucose ABC transporter permease|Haloferax volcanii (strain ATCC

Query: 2 FPYMTHPSV 10
FP MT P V
Sbjct: 118 FPQMTFPIV 126


>sp|LONH_THEVO|PUTATIVE lon protease homolog|Thermoplasma volcanium (strain ATCC 51530

Query: 1 HFPYMTHPSV 10
H PY HP +
Sbjct: 250 HDPYGGHPQL 259


>sp|LONH_METTH|PUTATIVE lon protease homolog|Methanothermobacter thermautotrophicus (strain

Query: 1 HFPYMTHPSV 10
H PY HP +
Sbjct: 255 HDPYGGHPDL 264


>sp|HTPX2_METMA|PROTEASE HtpX homolog 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 YMTHPSV 10
+ THPSV
Sbjct: 273 FSTHPSV 279


>sp|LONH_THEAC|PUTATIVE lon protease homolog|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 HFPYMTHPSV 10
H PY HP +
Sbjct: 250 HDPYGGHPQL 259




261|Sequence|1301|1313|THPSVQAHHQQQL

>sp|FAU1_PYRHO|PROBABLE ribonuclease FAU-1|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 PSVQAHHQ 10
P+++ HHQ
Sbjct: 266 PTIEGHHQ 273


>sp|FAU1_PYRFU|PROBABLE ribonuclease FAU-1|Pyrococcus furiosus (strain ATCC 43587

Query: 3 PSVQAHHQ 10
P+++ HHQ
Sbjct: 266 PTIEGHHQ 273


>sp|FAU1_PYRAB|PROBABLE ribonuclease FAU-1|Pyrococcus abyssi (strain GE5 /

Query: 3 PSVQAHHQ 10
P+++ HHQ
Sbjct: 266 PTIEGHHQ 273


>sp|FAU1_THEKO|PROBABLE ribonuclease FAU-1|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 PSVQAHHQ 10
P+V HHQ
Sbjct: 268 PTVDGHHQ 275


>sp|SYL_METTP|LEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 HPSVQAHHQ 10
HP +Q+H +
Sbjct: 869 HPEIQSHKK 877


>sp|RL15E_METMA|LARGE ribosomal subunit protein eL15|Methanosarcina mazei (strain ATCC

Query: 1 THPSVQAHHQQ 11
T PS++AH +
Sbjct: 184 TRPSIRAHKSR 194


>sp|RL15E_METAR|LARGE ribosomal subunit protein eL15|Methanocella arvoryzae (strain DSM

Query: 2 HPSVQAHHQQ 11
+PSVQAH ++
Sbjct: 185 YPSVQAHDRR 194


>sp|EF1A_META3|ELONGATION factor 1-alpha|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 SVQAHHQQ 11
+++AHH+Q
Sbjct: 274 TIEAHHEQ 281


>sp|DAPB_METS3|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanobrevibacter smithii (strain ATCC 35061

Query: 5 VQAHHQQQ 12
++AHH Q+
Sbjct: 157 IEAHHNQK 164


>sp|DAPB_METMA|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 VQAHHQQQ 12
++AHH Q+
Sbjct: 154 IEAHHNQK 161


>sp|DAPB_METBU|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanococcoides burtonii (strain DSM 6242

Query: 5 VQAHHQQQ 12
++AHH Q+
Sbjct: 154 IEAHHNQK 161


>sp|DAPB_METBF|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanosarcina barkeri (strain Fusaro /

Query: 5 VQAHHQQQ 12
++AHH Q+
Sbjct: 154 IEAHHNQK 161


>sp|DAPB_METAC|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 VQAHHQQQ 12
++AHH Q+
Sbjct: 154 IEAHHNQK 161


>sp|COFH2_METMP|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase 2|Methanococcus maripaludis (strain DSM

Query: 2 HPSVQAHHQ 10
HP V H Q
Sbjct: 107 HPDVDTHFQ 115


>sp|ATGT_HALSA|TRNA-GUANINE(15) transglycosylase|Halobacterium salinarum (strain ATCC 700922

Query: 3 PSVQAHHQQ 11
P V HHQ+
Sbjct: 378 PEVHRHHQR 386






THE END