Disease Motifs
Set Theory

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Set Theory as applied to the proteins associated with Leukemia

There are 29 subsets from the Leukemia protein dataset so far, but this may change as some sets may: become merged together; other new sets may be created; and some sets might be deleted. Not all of these sets have been checked for false positives and negatives, e.g., in the IRON set some datasheets were added because they contained the word envIRONment (this has been corrected now). The "#" shows the score, or a rough indication of how many times the keyword (the set name) occurs within the datasheet.

#1 ADENOCARCINOMA has 2 proteins

ATM_HUMAN Serine-protein kinase ATM → See barchart #15 GN: ATM Loc: 11q22.3
KIT_HUMAN Mast/stem cell growth factor receptor Kit → See barchart #2 GN: KIT Loc: 4q12

Sequences for the alignment file
Datasheets of the set

#2 APOPTOSIS has 8 proteins

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #6 GN: ABL1 Loc: 9q34.12
ATM_HUMAN Serine-protein kinase ATM → See barchart #1 GN: ATM Loc: 11q22.3
CBL_HUMAN E3 ubiquitin-protein ligase CBL → See barchart #3 GN: CBL Loc: 11q23.3
FLT3_HUMAN Receptor-type tyrosine-protein kinase FLT3 → See barchart #1 GN: FLT3 Loc: 13q12.2
KMT2A_HUMAN MLL cleavage product C180 → See barchart #4 GN: KMT2A Loc: 11q23.3
MCL1_HUMAN Induced myeloid leukemia cell differentiation protein Mcl-1 → See barchart #11 GN: MCL1 Loc: 1q21.2
NPM_HUMAN Nucleophosmin → See barchart #1 GN: NPM1 Loc: 5q35.1
PML_HUMAN Protein PML → See barchart #10 GN: PML Loc: 15q24.1

Sequences for the alignment file
Datasheets of the set

#3 ATAXIA has 4 proteins

AF9_HUMAN Protein AF-9 → See barchart #2 GN: MLLT3 Loc: 9p21.3
ATM_HUMAN Serine-protein kinase ATM → See barchart #38 GN: ATM Loc: 11q22.3
FLVC1_HUMAN Choline/ethanolamine transporter FLVCR1 → See barchart #7 GN: FLVCR1 Loc: 1q32.3
NU214_HUMAN Nuclear pore complex protein Nup214 → See barchart #1 GN: NUP214 Loc: 9q34.13

Sequences for the alignment file
Datasheets of the set

#4 BEHAV has 1 protein

SETBP_HUMAN SET-binding protein → See barchart #2 GN: SETBP1 Loc: 18q12.3

Sequences for the alignment file
Datasheets of the set

#5 BREAST has 3 proteins

ATM_HUMAN Serine-protein kinase ATM → See barchart #19 GN: ATM Loc: 11q22.3
NU214_HUMAN Nuclear pore complex protein Nup214 → See barchart #4 GN: NUP214 Loc: 9q34.13
NUP98_HUMAN Nuclear pore complex protein Nup96 → See barchart #2 GN: NUP98 Loc: 11p15.4

Sequences for the alignment file
Datasheets of the set

#6 CALCIUM has 1 protein

CBL_HUMAN E3 ubiquitin-protein ligase CBL → See barchart #6 GN: CBL Loc: 11q23.3

Sequences for the alignment file
Datasheets of the set

#7 CANCER has 13 proteins

ARI5B_HUMAN AT-rich interactive domain-containing protein 5B → See barchart #2 GN: ARID5B Loc: 10q21.2
ATM_HUMAN Serine-protein kinase ATM → See barchart #57 GN: ATM Loc: 11q22.3
CEBPA_HUMAN CCAAT/enhancer-binding protein alpha → See barchart #2 GN: CEBPA Loc: 19q13.11
DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A → See barchart #4 GN: DNMT3A Loc: 2p23.3
ETV6_HUMAN Transcription factor ETV6 → See barchart #4 GN: ETV6 Loc: 12p13.2
FLT3_HUMAN Receptor-type tyrosine-protein kinase FLT3 → See barchart #7 GN: FLT3 Loc: 13q12.2
JAK2_HUMAN Tyrosine-protein kinase JAK2 → See barchart #6 GN: JAK2 Loc: 9p24.1
KIT_HUMAN Mast/stem cell growth factor receptor Kit → See barchart #11 GN: KIT Loc: 4q12
LIFR_HUMAN Leukemia inhibitory factor receptor → See barchart #2 GN: LIFR Loc: 5p13.1
NPM_HUMAN Nucleophosmin → See barchart #6 GN: NPM1 Loc: 5q35.1
NU214_HUMAN Nuclear pore complex protein Nup214 → See barchart #5 GN: NUP214 Loc: 9q34.13
NUP98_HUMAN Nuclear pore complex protein Nup96 → See barchart #6 GN: NUP98 Loc: 11p15.4
SETBP_HUMAN SET-binding protein → See barchart #3 GN: SETBP1 Loc: 18q12.3

Sequences for the alignment file
Datasheets of the set

#8 CARCINOMA has 5 proteins

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #5 GN: ABL1 Loc: 9q34.12
ATM_HUMAN Serine-protein kinase ATM → See barchart #20 GN: ATM Loc: 11q22.3
BCR_HUMAN Breakpoint cluster region protein → See barchart #7 GN: BCR Loc: 22q11.23
JAK2_HUMAN Tyrosine-protein kinase JAK2 → See barchart #1 GN: JAK2 Loc: 9p24.1
KIT_HUMAN Mast/stem cell growth factor receptor Kit → See barchart #6 GN: KIT Loc: 4q12

Sequences for the alignment file
Datasheets of the set

#9 CARDIOMYOPATHY has 1 protein

PTN11_HUMAN Tyrosine-protein phosphatase non-receptor type 11 → See barchart #2 GN: PTPN11 Loc: 12q24.13

Sequences for the alignment file
Datasheets of the set

#10 COLORECTAL has 4 proteins

ATM_HUMAN Serine-protein kinase ATM → See barchart #9 GN: ATM Loc: 11q22.3
KIT_HUMAN Mast/stem cell growth factor receptor Kit → See barchart #2 GN: KIT Loc: 4q12
LIFR_HUMAN Leukemia inhibitory factor receptor → See barchart #2 GN: LIFR Loc: 5p13.1
SETBP_HUMAN SET-binding protein → See barchart #2 GN: SETBP1 Loc: 18q12.3

Sequences for the alignment file
Datasheets of the set

#11 EARLY-ONSET has 1 protein

ATM_HUMAN Serine-protein kinase ATM → See barchart #6 GN: ATM Loc: 11q22.3

Sequences for the alignment file
Datasheets of the set

#12 ENVIRONMENT has 1 protein

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #1 GN: ABL1 Loc: 9q34.12

Sequences for the alignment file
Datasheets of the set

#13 FINGER has 7 proteins

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #1 GN: ABL1 Loc: 9q34.12
BCR_HUMAN Breakpoint cluster region protein → See barchart #1 GN: BCR Loc: 22q11.23
CBL_HUMAN E3 ubiquitin-protein ligase CBL → See barchart #6 GN: CBL Loc: 11q23.3
CEBPA_HUMAN CCAAT/enhancer-binding protein alpha → See barchart #1 GN: CEBPA Loc: 19q13.11
KMT2A_HUMAN MLL cleavage product C180 → See barchart #26 GN: KMT2A Loc: 11q23.3
PML_HUMAN Protein PML → See barchart #13 GN: PML Loc: 15q24.1
ZBT16_HUMAN Zinc finger and BTB domain-containing protein 16 → See barchart #29 GN: ZBTB16 Loc: 11q23.2

Sequences for the alignment file
Datasheets of the set

#14 GASTR has 4 proteins

ATM_HUMAN Serine-protein kinase ATM → See barchart #1 GN: ATM Loc: 11q22.3
FLVC1_HUMAN Choline/ethanolamine transporter FLVCR1 → See barchart #1 GN: FLVCR1 Loc: 1q32.3
KIT_HUMAN Mast/stem cell growth factor receptor Kit → See barchart #11 GN: KIT Loc: 4q12
TET2_HUMAN Methylcytosine dioxygenase TET2 → See barchart #1 GN: TET2 Loc: 4q24

Sequences for the alignment file
Datasheets of the set

#15 IRON has 2 proteins

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #2 GN: ABL1 Loc: 9q34.12
FLVC1_HUMAN Choline/ethanolamine transporter FLVCR1 → See barchart #3 GN: FLVCR1 Loc: 1q32.3

Sequences for the alignment file
Datasheets of the set

#16 JUVENILE has 3 proteins

CBL_HUMAN E3 ubiquitin-protein ligase CBL → See barchart #4 GN: CBL Loc: 11q23.3
PTN11_HUMAN Tyrosine-protein phosphatase non-receptor type 11 → See barchart #6 GN: PTPN11 Loc: 12q24.13
SETBP_HUMAN SET-binding protein → See barchart #3 GN: SETBP1 Loc: 18q12.3

Sequences for the alignment file
Datasheets of the set

#17 LEUKEMIA has 30 proteins

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #14 GN: ABL1 Loc: 9q34.12
AF9_HUMAN Protein AF-9 → See barchart #11 GN: MLLT3 Loc: 9p21.3
ARI5B_HUMAN AT-rich interactive domain-containing protein 5B → See barchart #12 GN: ARID5B Loc: 10q21.2
ATM_HUMAN Serine-protein kinase ATM → See barchart #47 GN: ATM Loc: 11q22.3
BCR_HUMAN Breakpoint cluster region protein → See barchart #12 GN: BCR Loc: 22q11.23
CBL_HUMAN E3 ubiquitin-protein ligase CBL → See barchart #12 GN: CBL Loc: 11q23.3
CEBPA_HUMAN CCAAT/enhancer-binding protein alpha → See barchart #10 GN: CEBPA Loc: 19q13.11
DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A → See barchart #10 GN: DNMT3A Loc: 2p23.3
ETV6_HUMAN Transcription factor ETV6 → See barchart #21 GN: ETV6 Loc: 12p13.2
FLT3_HUMAN Receptor-type tyrosine-protein kinase FLT3 → See barchart #34 GN: FLT3 Loc: 13q12.2
FLVC1_HUMAN Choline/ethanolamine transporter FLVCR1 → See barchart #11 GN: FLVCR1 Loc: 1q32.3
JAK2_HUMAN Tyrosine-protein kinase JAK2 → See barchart #11 GN: JAK2 Loc: 9p24.1
KAT6A_HUMAN Histone acetyltransferase KAT6A → See barchart #10 GN: KAT6A Loc: 8p11.21
KIT_HUMAN Mast/stem cell growth factor receptor Kit → See barchart #15 GN: KIT Loc: 4q12
KMT2A_HUMAN MLL cleavage product C180 → See barchart #40 GN: KMT2A Loc: 11q23.3
LIFR_HUMAN Leukemia inhibitory factor receptor → See barchart #16 GN: LIFR Loc: 5p13.1
LIF_HUMAN Leukemia inhibitory factor → See barchart #17 GN: LIF Loc: 22q12.2
MCL1_HUMAN Induced myeloid leukemia cell differentiation protein Mcl-1 → See barchart #10 GN: MCL1 Loc: 1q21.2
MTG8R_HUMAN Protein CBFA2T2 → See barchart #11 GN: CBFA2T2 Loc: 20q11.21-q11.22
NPM_HUMAN Nucleophosmin → See barchart #14 GN: NPM1 Loc: 5q35.1
NU214_HUMAN Nuclear pore complex protein Nup214 → See barchart #11 GN: NUP214 Loc: 9q34.13
NUP98_HUMAN Nuclear pore complex protein Nup96 → See barchart #23 GN: NUP98 Loc: 11p15.4
PML_HUMAN Protein PML → See barchart #36 GN: PML Loc: 15q24.1
PTN11_HUMAN Tyrosine-protein phosphatase non-receptor type 11 → See barchart #12 GN: PTPN11 Loc: 12q24.13
RUNX1_HUMAN Runt-related transcription factor 1 → See barchart #36 GN: RUNX1 Loc: 21q22.12
S20A1_HUMAN Sodium-dependent phosphate transporter 1 → See barchart #15 GN: SLC20A1 Loc: 2q14.1
SETBP_HUMAN SET-binding protein → See barchart #16 GN: SETBP1 Loc: 18q12.3
TAL1_HUMAN T-cell acute lymphocytic leukemia protein 1 → See barchart #12 GN: TAL1 Loc: 1p33
TET2_HUMAN Methylcytosine dioxygenase TET2 → See barchart #36 GN: TET2 Loc: 4q24
ZBT16_HUMAN Zinc finger and BTB domain-containing protein 16 → See barchart #11 GN: ZBTB16 Loc: 11q23.2

Sequences for the alignment file
Datasheets of the set

#18 LUNG has 7 proteins

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #2 GN: ABL1 Loc: 9q34.12
ATM_HUMAN Serine-protein kinase ATM → See barchart #8 GN: ATM Loc: 11q22.3
CEBPA_HUMAN CCAAT/enhancer-binding protein alpha → See barchart #4 GN: CEBPA Loc: 19q13.11
DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A → See barchart #2 GN: DNMT3A Loc: 2p23.3
KMT2A_HUMAN MLL cleavage product C180 → See barchart #1 GN: KMT2A Loc: 11q23.3
MTG8R_HUMAN Protein CBFA2T2 → See barchart #1 GN: CBFA2T2 Loc: 20q11.21-q11.22
ZBT16_HUMAN Zinc finger and BTB domain-containing protein 16 → See barchart #1 GN: ZBTB16 Loc: 11q23.2

Sequences for the alignment file
Datasheets of the set

#19 MELANOMA has 1 protein

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #1 GN: ABL1 Loc: 9q34.12

Sequences for the alignment file
Datasheets of the set

#20 MICROTUBULE has 3 proteins

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #3 GN: ABL1 Loc: 9q34.12
ATM_HUMAN Serine-protein kinase ATM → See barchart #1 GN: ATM Loc: 11q22.3
NPM_HUMAN Nucleophosmin → See barchart #1 GN: NPM1 Loc: 5q35.1

Sequences for the alignment file
Datasheets of the set

#21 MITOCHOND has 4 proteins

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #7 GN: ABL1 Loc: 9q34.12
FLVC1_HUMAN Choline/ethanolamine transporter FLVCR1 → See barchart #9 GN: FLVCR1 Loc: 1q32.3
MCL1_HUMAN Induced myeloid leukemia cell differentiation protein Mcl-1 → See barchart #12 GN: MCL1 Loc: 1q21.2
PML_HUMAN Protein PML → See barchart #3 GN: PML Loc: 15q24.1

Sequences for the alignment file
Datasheets of the set

#22 OVARIAN has 1 protein

JAK2_HUMAN Tyrosine-protein kinase JAK2 → See barchart #1 GN: JAK2 Loc: 9p24.1

Sequences for the alignment file
Datasheets of the set

#23 POLYMERASE has 3 proteins

AF9_HUMAN Protein AF-9 → See barchart #4 GN: MLLT3 Loc: 9p21.3
CEBPA_HUMAN CCAAT/enhancer-binding protein alpha → See barchart #11 GN: CEBPA Loc: 19q13.11
PML_HUMAN Protein PML → See barchart #3 GN: PML Loc: 15q24.1

Sequences for the alignment file
Datasheets of the set

#24 PROSTATE has 1 protein

MTG8R_HUMAN Protein CBFA2T2 → See barchart #2 GN: CBFA2T2 Loc: 20q11.21-q11.22

Sequences for the alignment file
Datasheets of the set

#25 SARCOMA has 3 proteins

KIT_HUMAN Mast/stem cell growth factor receptor Kit → See barchart #2 GN: KIT Loc: 4q12
NPM_HUMAN Nucleophosmin → See barchart #2 GN: NPM1 Loc: 5q35.1
S20A1_HUMAN Sodium-dependent phosphate transporter 1 → See barchart #1 GN: SLC20A1 Loc: 2q14.1

Sequences for the alignment file
Datasheets of the set

#26 SENSORY has 1 protein

FLVC1_HUMAN Choline/ethanolamine transporter FLVCR1 → See barchart #12 GN: FLVCR1 Loc: 1q32.3

Sequences for the alignment file
Datasheets of the set

#27 UBIQUITIN has 13 proteins

ABL1_HUMAN Tyrosine-protein kinase ABL1 → See barchart #6 GN: ABL1 Loc: 9q34.12
ATM_HUMAN Serine-protein kinase ATM → See barchart #5 GN: ATM Loc: 11q22.3
CBL_HUMAN E3 ubiquitin-protein ligase CBL → See barchart #55 GN: CBL Loc: 11q23.3
CEBPA_HUMAN CCAAT/enhancer-binding protein alpha → See barchart #3 GN: CEBPA Loc: 19q13.11
FLT3_HUMAN Receptor-type tyrosine-protein kinase FLT3 → See barchart #5 GN: FLT3 Loc: 13q12.2
JAK2_HUMAN Tyrosine-protein kinase JAK2 → See barchart #3 GN: JAK2 Loc: 9p24.1
KIT_HUMAN Mast/stem cell growth factor receptor Kit → See barchart #5 GN: KIT Loc: 4q12
MCL1_HUMAN Induced myeloid leukemia cell differentiation protein Mcl-1 → See barchart #24 GN: MCL1 Loc: 1q21.2
NPM_HUMAN Nucleophosmin → See barchart #8 GN: NPM1 Loc: 5q35.1
PML_HUMAN Protein PML → See barchart #40 GN: PML Loc: 15q24.1
TAL1_HUMAN T-cell acute lymphocytic leukemia protein 1 → See barchart #3 GN: TAL1 Loc: 1p33
TET2_HUMAN Methylcytosine dioxygenase TET2 → See barchart #14 GN: TET2 Loc: 4q24
ZBT16_HUMAN Zinc finger and BTB domain-containing protein 16 → See barchart #8 GN: ZBTB16 Loc: 11q23.2

Sequences for the alignment file
Datasheets of the set

#28 WEIGHT has 2 proteins

PML_HUMAN Protein PML → See barchart #1 GN: PML Loc: 15q24.1
SETBP_HUMAN SET-binding protein → See barchart #2 GN: SETBP1 Loc: 18q12.3

Sequences for the alignment file
Datasheets of the set

#29 ZINC has 6 proteins

CBL_HUMAN E3 ubiquitin-protein ligase CBL → See barchart #7 GN: CBL Loc: 11q23.3
CEBPA_HUMAN CCAAT/enhancer-binding protein alpha → See barchart #1 GN: CEBPA Loc: 19q13.11
KMT2A_HUMAN MLL cleavage product C180 → See barchart #45 GN: KMT2A Loc: 11q23.3
PML_HUMAN Protein PML → See barchart #13 GN: PML Loc: 15q24.1
TET2_HUMAN Methylcytosine dioxygenase TET2 → See barchart #5 GN: TET2 Loc: 4q24
ZBT16_HUMAN Zinc finger and BTB domain-containing protein 16 → See barchart #31 GN: ZBTB16 Loc: 11q23.2

Sequences for the alignment file
Datasheets of the set