GPNMB_HUMAN Blast OutputR
Archaea
1|SequenceR|10|1|FGLFYYLCEM

>sp|CCA_THEAI|CCA-ADDING enzyme|Thermoplasma acidophilum

Query: 1 FGLFYYLCEM 10
FG YLCE+
Sbjct: 171 FGFSGYLCEL 180


>sp|CCA_THEAC|CCA-ADDING enzyme|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 FGLFYYLCEM 10
FG YLCE+
Sbjct: 171 FGFSGYLCEL 180


>sp|T1R1_METJA|PUTATIVE type I restriction enzyme|Methanocaldococcus jannaschii (strain

Query: 4 FYYLCE 9
F+YLCE
Sbjct: 33 FFYLCE 38


>sp|SECY_HALSA|PROTEIN translocase subunit SecY|Halobacterium salinarum (strain ATCC

Query: 2 GLFYYL 7
GLFYYL
Sbjct: 335 GLFYYL 340


>sp|RPO2N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo2N|Halobacterium salinarum (strain ATCC

Query: 5 YYLCEM 10
YYLC M
Sbjct: 323 YYLCRM 328


>sp|RPO2N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo2N|Halobacterium salinarum (strain ATCC

Query: 5 YYLCEM 10
YYLC M
Sbjct: 323 YYLCRM 328


>sp|CCA_PYRFU|CCA-ADDING enzyme|Pyrococcus furiosus (strain ATCC 43587

Query: 1 FGLFYY 6
FGLFY+
Sbjct: 258 FGLFYF 263


>sp|CARB_ARCFU|CARBAMOYL phosphate synthase large chain|Archaeoglobus fulgidus (strain ATCC

Query: 1 FGLFYYLCEM 10
FGL YY E+
Sbjct: 925 FGLAYYKAEL 934


>sp|CYAS_METB6|CYSTEATE synthase|Methanoregula boonei (strain DSM 21154

Query: 2 GLFYYLC 8
G+F YLC
Sbjct: 48 GIFRYLC 54


>sp|Y651_METJA|PUTATIVE protease MJ0651|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FGLFYYL 7
FGL YYL
Sbjct: 279 FGLTYYL 285


>sp|RAMA_METBA|[CO(II) methylated amine-specific corrinoid protein]|Methanosarcina barkeri

Query: 5 YYLCEM 10
+YLCE+
Sbjct: 409 FYLCEL 414


>sp|TYW2_METJA|TRNA(PHE) (4-demethylwyosine(37)-C(7))

Query: 4 FYYLCE 9
++YLCE
Sbjct: 133 YHYLCE 138


>sp|SECY_HALMA|PROTEIN translocase subunit SecY|Haloarcula marismortui (strain ATCC 43049

Query: 2 GLFYYL 7
GLFY+L
Sbjct: 334 GLFYFL 339




2|SequenceR|15|6|AALLLFGLFY

>sp|KDPC_HALSA|POTASSIUM-TRANSPORTING ATPase KdpC subunit|Halobacterium salinarum (strain ATCC 700922

Query: 2 ALLLFGLFY 10
+LL+FGL Y
Sbjct: 16 SLLVFGLLY 24


>sp|KDPC_HALS3|POTASSIUM-TRANSPORTING ATPase KdpC subunit|Halobacterium salinarum (strain ATCC 29341

Query: 2 ALLLFGLFY 10
+LL+FGL Y
Sbjct: 16 SLLVFGLLY 24


>sp|HTPX_METTH|PROTEASE HtpX homolog|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 AALLLFGLFY 10
A +LLFGL Y
Sbjct: 22 ATVLLFGLIY 31


>sp|DNLI_HALSA|DNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 4 LLFGLF 9
LLFGLF
Sbjct: 146 LLFGLF 151


>sp|DNLI_HALS3|DNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 4 LLFGLF 9
LLFGLF
Sbjct: 146 LLFGLF 151


>sp|DNLI2_HALWD|DNA ligase 2|Haloquadratum walsbyi (strain DSM 16790

Query: 4 LLFGLF 9
LLFGLF
Sbjct: 148 LLFGLF 153


>sp|FILI_METH6|METHANOGENESIS regulatory histidine kinase FilI|Methanothrix harundinacea (strain

Query: 5 LFGLFY 10
+FGLFY
Sbjct: 835 VFGLFY 840


>sp|IF2P_PYRAB|PROBABLE translation initiation factor IF-2|Pyrococcus abyssi (strain GE5 /

Query: 2 ALLLFGLF 9
ALL FG+F
Sbjct: 214 ALLRFGIF 221


>sp|FPON_METMA|F(420)H(2) dehydrogenase subunit N|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 AALLLFGL 8
AAL+LFGL
Sbjct: 172 AALMLFGL 179




3|SequenceR|20|11|DLPLRAALLL

>sp|IF2P_METS3|PROBABLE translation initiation factor IF-2|Methanobrevibacter smithii

Query: 1 DLPLRAA 7
D+P+RAA
Sbjct: 375 DIPIRAA 381


>sp|COPB_ARCFU|COPPER-EXPORTING P-type ATPase B|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 DLPLRAALLL 10
DL RAALLL
Sbjct: 299 DLANRAALLL 308




4|SequenceR|25|16|FRKAADLPLR

>sp|3MGH_METMJ|PUTATIVE 3-methyladenine DNA glycosylase|Methanoculleus marisnigri (strain

Query: 3 KAADLPLR 10
KAADLPLR
Sbjct: 173 KAADLPLR 180


>sp|SYP_METTP|PROLINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 RKAADLPLR 10
R ADLPLR
Sbjct: 128 RSHADLPLR 136


>sp|SYP_THEVO|PROLINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 RKAADLPLR 10
R ADLPL+
Sbjct: 120 RSHADLPLK 128


>sp|SYP_THEAC|PROLINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 RKAADLPLR 10
R ADLPL+
Sbjct: 120 RSHADLPLK 128


>sp|ACDA1_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus fulgidus

Query: 2 RKAADLPLR 10
R ADLPL+
Sbjct: 739 RSEADLPLK 747


>sp|SYP_METLZ|PROLINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 RKAADLPLR 10
R ADLPL+
Sbjct: 125 RSHADLPLK 133


>sp|SYP_METAR|PROLINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 RKAADLPLR 10
R ADLPL+
Sbjct: 125 RSHADLPLK 133


>sp|NPD_METKA|NAD-DEPENDENT protein deacylase|Methanopyrus kandleri (strain AV19 /

Query: 2 RKAADLPL 9
R AADLPL
Sbjct: 197 RPAADLPL 204


>sp|MFNA_METTH|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanothermobacter

Query: 1 FRKAADL 7
FRKAAD+
Sbjct: 101 FRKAADI 107


>sp|SYP_METBU|PROLINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 RKAADLPLR 10
R ADLPL+
Sbjct: 127 RSHADLPLK 135


>sp|SYP_ARCFU|PROLINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 RKAADLPLR 10
R ADLPL+
Sbjct: 120 RNHADLPLK 128


>sp|TRPA_PYRAB|TRYPTOPHAN synthase alpha chain|Pyrococcus abyssi (strain GE5 /

Query: 1 FRKAADLPL 9
FRK +D+P+
Sbjct: 75 FRKHSDVPI 83


>sp|SYP_METKA|PROLINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 RKAADLPLR 10
R ADLPL+
Sbjct: 133 RSHADLPLK 141


>sp|MUTS2_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 3 KAADLPL 9
KAADLP+
Sbjct: 688 KAADLPI 694


>sp|MFNA_NATPD|PROBABLE L-aspartate decarboxylase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 FRKAADL 7
FRKAAD+
Sbjct: 105 FRKAADI 111




5|SequenceR|30|21|GLVDHFRKAA

>sp|DAPA_METLZ|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 GLVDHFRKAA 10
GL+ H+RK A
Sbjct: 116 GLLKHYRKVA 125


>sp|DAPA_METBU|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 GLVDHFRKAA 10
GL+ HFR A
Sbjct: 112 GLISHFRTIA 121


>sp|SYL_METTP|LEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 GLVDHFRKAA 10
+VD+FRK A
Sbjct: 123 AIVDYFRKQA 132


>sp|DAPA_METBF|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 GLVDHFRKAA 10
GL+ HF+K A
Sbjct: 112 GLLTHFKKIA 121


>sp|DAPA_METAC|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GLVDHFRKAA 10
GL+ HF+K A
Sbjct: 112 GLLAHFKKIA 121


>sp|DAPA_METMA|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GLVDHFRKAA 10
GL+ HF+K A
Sbjct: 112 GLLAHFKKIA 121


>sp|Y2678_METMA|UNCHARACTERIZED serpin-like protein MM_2675|Methanosarcina mazei (strain ATCC

Query: 1 GLVDHFRKA 9
G+VD FR+A
Sbjct: 332 GVVDAFRQA 340


>sp|DAPA_METMJ|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 GLVDHFRKAA 10
GL+ HF K A
Sbjct: 116 GLIKHFTKLA 125


>sp|DP2S_PYRAB|DNA polymerase II small subunit|Pyrococcus abyssi (strain GE5 /

Query: 2 LVDHFRKA 9
LVDHF++
Sbjct: 23 LVDHFKEG 30


>sp|SYA_PICTO|ALANINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 1 GLVDHFR 7
GLVDH R
Sbjct: 326 GLVDHAR 332


>sp|PNCB_METAC|NICOTINATE phosphoribosyltransferase|Methanosarcina acetivorans (strain ATCC

Query: 2 LVDHFRK 8
++DH+RK
Sbjct: 298 VIDHYRK 304


>sp|SYFA_THEAC|PHENYLALANINE--TRNA ligase alpha subunit|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 GLVDHFR 7
++DHFR
Sbjct: 154 AMIDHFR 160


>sp|KPRS_HALSA|RIBOSE-PHOSPHATE pyrophosphokinase|Halobacterium salinarum (strain ATCC 700922

Query: 1 GLVDHFRK 8
G+ DHF+K
Sbjct: 178 GVTDHFQK 185


>sp|KPRS_HALS3|RIBOSE-PHOSPHATE pyrophosphokinase|Halobacterium salinarum (strain ATCC 29341

Query: 1 GLVDHFRK 8
G+ DHF+K
Sbjct: 178 GVTDHFQK 185


>sp|RS19E_AERPE|SMALL ribosomal subunit protein eS19|Aeropyrum pernix (strain ATCC

Query: 4 DHFRKAA 10
+HFRKA
Sbjct: 90 EHFRKAG 96


>sp|RLME_NITMS|RIBOSOMAL RNA large subunit methyltransferase|Nitrosopumilus maritimus

Query: 4 DHFRKAA 10
DH+RK A
Sbjct: 9 DHYRKLA 15


>sp|ISCU2_ARCFU|IRON-SULFUR cluster assembly scaffold protein|Archaeoglobus fulgidus (strain

Query: 1 GLVDHFRK 8
+VD+FRK
Sbjct: 113 AIVDYFRK 120


>sp|ISCU1_ARCFU|IRON-SULFUR cluster assembly scaffold protein|Archaeoglobus fulgidus (strain

Query: 1 GLVDHFRK 8
+VD+FRK
Sbjct: 113 AIVDYFRK 120


>sp|RLME_CENSY|RIBOSOMAL RNA large subunit methyltransferase|Cenarchaeum symbiosum (strain

Query: 4 DHFRKAA 10
DH+RK A
Sbjct: 9 DHYRKMA 15


>sp|HACB1_METAC|METHANOGEN homoaconitase small subunit 1|Methanosarcina acetivorans (strain

Query: 1 GLVDHFRKA 9
GLV H +KA
Sbjct: 152 GLVSHRKKA 160




6|SequenceR|35|26|SPRENGLVDH

>sp|PORD_METBF|PYRUVATE synthase subunit PorD|Methanosarcina barkeri (strain Fusaro /

Query: 2 PRENGLVDH 10
PRENG ++
Sbjct: 60 PRENGFFEY 68


>sp|RPO2N_METJA|DNA-DIRECTED RNA polymerase subunit Rpo2N|Methanocaldococcus jannaschii

Query: 3 RENGLVDH 10
+E+GL+DH
Sbjct: 13 KEHGLIDH 20


>sp|HIS1_THEKO|ATP phosphoribosyltransferase|Thermococcus kodakarensis (strain ATCC

Query: 3 RENGLVD 9
RENGLV+
Sbjct: 157 RENGLVE 163


>sp|KADA_METJA|ADENYLATE kinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 RENGLVDH 10
+E GLV+H
Sbjct: 48 KEEGLVEH 55


>sp|RPO1N_METTH|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanothermobacter

Query: 2 PRENGLVD 9
P ENGL+D
Sbjct: 41 PIENGLMD 48


>sp|MAP2_SACS2|METHIONINE aminopeptidase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 SPRENGLVD 9
S REN L+D
Sbjct: 219 SSRENELID 227


>sp|RPO2N_METVS|DNA-DIRECTED RNA polymerase subunit Rpo2N|Methanococcus vannielii (strain ATCC

Query: 3 RENGLVDH 10
REN LV H
Sbjct: 12 RENSLVKH 19


>sp|RL21_SACI7|LARGE ribosomal subunit protein eL21|Saccharolobus islandicus (strain

Query: 1 SPRENGLV 8
SPRE G V
Sbjct: 19 SPRERGAV 26


>sp|RL21_METS5|LARGE ribosomal subunit protein eL21|Metallosphaera sedula (strain ATCC

Query: 1 SPRENGLV 8
SPRE G V
Sbjct: 19 SPRERGAV 26


>sp|RL21_SACI6|LARGE ribosomal subunit protein eL21|Saccharolobus islandicus (strain

Query: 1 SPRENGLV 8
SPRE G V
Sbjct: 19 SPRERGAV 26


>sp|RL21_SACI4|LARGE ribosomal subunit protein eL21|Saccharolobus islandicus (strain

Query: 1 SPRENGLV 8
SPRE G V
Sbjct: 19 SPRERGAV 26


>sp|RL21_SACI3|LARGE ribosomal subunit protein eL21|Saccharolobus islandicus (strain

Query: 1 SPRENGLV 8
SPRE G V
Sbjct: 19 SPRERGAV 26


>sp|RL21_SACI2|LARGE ribosomal subunit protein eL21|Saccharolobus islandicus (strain

Query: 1 SPRENGLV 8
SPRE G V
Sbjct: 19 SPRERGAV 26


>sp|RL21_SACI1|LARGE ribosomal subunit protein eL21|Saccharolobus islandicus (strain

Query: 1 SPRENGLV 8
SPRE G V
Sbjct: 19 SPRERGAV 26


>sp|DTDA_HALMA|D-AMINOACYL-TRNA deacylase|Haloarcula marismortui (strain ATCC 43049

Query: 2 PRENGLVDH 10
PRENG H
Sbjct: 185 PRENGTRRH 193


>sp|RL21_SACS2|LARGE ribosomal subunit protein eL21|Saccharolobus solfataricus (strain

Query: 1 SPRENGLV 8
SPRE G V
Sbjct: 19 SPRERGAV 26


>sp|SYL_METKA|LEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 3 RENGLVD 9
RE GLVD
Sbjct: 162 REKGLVD 168




7|SequenceR|40|31|ERMYASPREN

>sp|UREG_METS5|UREASE accessory protein UreG|Metallosphaera sedula (strain ATCC 51363

Query: 1 ERMYASPREN 10
ER+ PREN
Sbjct: 54 ERLRILPREN 63


>sp|PYLS_METAC|PYRROLYSINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 ERMYASPREN 10
+R+YA REN
Sbjct: 221 KRIYAEEREN 230


>sp|CAS6_HALMT|CRISPR-ASSOCIATED endoribonuclease Cas6|Haloferax mediterranei (strain ATCC 33500

Query: 3 MYASPREN 10
++ASPRE+
Sbjct: 68 LFASPRED 75


>sp|DPO4_METAC|DNA polymerase IV|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 RMYASPREN 10
R YA P EN
Sbjct: 96 RSYADPGEN 104




8|SequenceR|45|36|NLQNHERMYA

>sp|Y954_METJA|UNCHARACTERIZED protein MJ0954|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LQNHERMY 9
L+NHE++Y
Sbjct: 325 LKNHEKIY 332


>sp|CUTA_THEKO|DIVALENT-CATION tolerance protein CutA|Thermococcus kodakarensis (strain ATCC

Query: 1 NLQNHERMY 9
NL+ HE MY
Sbjct: 33 NLREHEAMY 41


>sp|HEM3_METJA|PROBABLE porphobilinogen deaminase|Methanocaldococcus jannaschii (strain

Query: 4 NHERMY 9
NHER Y
Sbjct: 211 NHERTY 216


>sp|SYK_METST|LYSINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 NLQNHERMY 9
++Q H+RMY
Sbjct: 471 DVQFHDRMY 479


>sp|GLYA_METS3|SERINE hydroxymethyltransferase|Methanobrevibacter smithii (strain ATCC

Query: 3 QNHERMY 9
Q+HER+Y
Sbjct: 55 QSHERLY 61


>sp|UVRC_HALLT|UVRABC system protein C|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 NLQNHERMYA 10
NL+N R YA
Sbjct: 36 NLRNRVRSYA 45




9|SequenceR|50|41|DSSWGNLQNH

>sp|Y1942_ARCFU|UNCHARACTERIZED protein AF_1942|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 DSSWGNLQNH 10
D SWGNL H
Sbjct: 15 DESWGNLMLH 24


>sp|DGGGP_THESM|DIGERANYLGERANYLGLYCERYL phosphate synthase|Thermococcus sibiricus (strain DSM 12597

Query: 1 DSSWGNLQN 9
+ SWGN+ N
Sbjct: 49 ECSWGNIIN 57


>sp|DP2L_METKA|DNA polymerase II large subunit|Methanopyrus kandleri (strain AV19 /

Query: 2 SSWGNLQ 8
S WGNL+
Sbjct: 593 SEWGNLR 599


>sp|FRHA_METVO|COENZYME F420 hydrogenase subunit alpha|Methanococcus voltae

Query: 1 DSSWGNLQN 9
DS++GN +N
Sbjct: 219 DSTYGNREN 227


>sp|FAEHP_METST|BIFUNCTIONAL enzyme Fae/Hps|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 SSWGNLQN 9
S WGN+++
Sbjct: 326 SEWGNIKD 333


>sp|PRIS_METBU|DNA primase small subunit PriS|Methanococcoides burtonii (strain DSM

Query: 1 DSSWGNLQNH 10
D WG NH
Sbjct: 209 DGGWGGRINH 218


>sp|ACSA_METSH|ACETYL-COENZYME A synthetase|Methanothrix soehngenii (Methanosaeta concilii)

Query: 4 WGNLQNH 10
W N+Q+H
Sbjct: 367 WKNIQDH 373


>sp|FAEHP_METTH|BIFUNCTIONAL enzyme Fae/Hps|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 SSWGNLQ 8
S WGN++
Sbjct: 326 SEWGNIR 332


>sp|DGGGP_THEPD|DIGERANYLGERANYLGLYCERYL phosphate synthase|Thermofilum pendens (strain DSM 2475

Query: 4 WGNLQN 9
WGN+ N
Sbjct: 60 WGNIVN 65




10|SequenceR|55|46|NWDNEDSSWG

>sp|ARCSA_METAC|ARCHAEOSINE synthase subunit alpha|Methanosarcina acetivorans (strain ATCC

Query: 1 NWDNEDSSW 9
+WD E+ +W
Sbjct: 397 HWDEEEKAW 405


>sp|IF2P_METST|PROBABLE translation initiation factor IF-2|Methanosphaera stadtmanae

Query: 3 DNEDSSWG 10
+ EDS+WG
Sbjct: 585 ETEDSNWG 592


>sp|NDK_HALMA|NUCLEOSIDE diphosphate kinase|Haloarcula marismortui (strain ATCC 43049

Query: 1 NWDNEDSSW 9
+WD DSSW
Sbjct: 143 DWDQIDSSW 151


>sp|TFE_METJA|TRANSCRIPTION factor E|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WDNEDSSW 9
W +ED++W
Sbjct: 68 WKDEDTNW 75


>sp|NDK_ARCFU|NUCLEOSIDE diphosphate kinase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 NWDNEDSSW 9
NW+ D W
Sbjct: 138 NWEKADEDW 146


>sp|RIFK_HALSA|RIBOFLAVIN kinase|Halobacterium salinarum (strain ATCC 700922

Query: 2 WDNEDSSWG 10
W++ED ++G
Sbjct: 165 WEDEDRTYG 173


>sp|PDAD_NITMS|PYRUVOYL-DEPENDENT arginine decarboxylase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 NWDNEDSSW 9
NWD + W
Sbjct: 140 NWDEKRQQW 148


>sp|EF2_METBF|ELONGATION factor 2|Methanosarcina barkeri (strain Fusaro /

Query: 1 NWDNED 6
N+DNED
Sbjct: 82 NFDNED 87


>sp|CDC61_METTH|ORC1-TYPE DNA replication protein 1|Methanothermobacter thermautotrophicus

Query: 5 EDSSWG 10
EDS WG
Sbjct: 376 EDSLWG 381


>sp|METE_SACI7|METHIONINE synthase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 5 EDSSWG 10
ED SWG
Sbjct: 188 EDVSWG 193


>sp|METE_SACI1|METHIONINE synthase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 5 EDSSWG 10
ED SWG
Sbjct: 188 EDVSWG 193


>sp|METE_SACI6|METHIONINE synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 5 EDSSWG 10
ED SWG
Sbjct: 188 EDVSWG 193


>sp|METE_SACI4|METHIONINE synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 5 EDSSWG 10
ED SWG
Sbjct: 188 EDVSWG 193


>sp|METE_SACI3|METHIONINE synthase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 5 EDSSWG 10
ED SWG
Sbjct: 188 EDVSWG 193


>sp|METE_SACI2|METHIONINE synthase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 5 EDSSWG 10
ED SWG
Sbjct: 188 EDVSWG 193


>sp|METE_SACS2|METHIONINE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 EDSSWG 10
ED SWG
Sbjct: 188 EDVSWG 193


>sp|Y279_THEVO|UPF0200 protein TV0279|Thermoplasma volcanium (strain ATCC 51530

Query: 3 DNEDSSWG 10
DN + SWG
Sbjct: 135 DNRELSWG 142


>sp|ACDD_METMA|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina mazei

Query: 5 EDSSWG 10
EDS WG
Sbjct: 369 EDSDWG 374


>sp|ACDD2_METTE|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 5 EDSSWG 10
EDS WG
Sbjct: 370 EDSDWG 375


>sp|ACDD2_METAC|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 5 EDSSWG 10
EDS WG
Sbjct: 369 EDSDWG 374


>sp|ACDD1_METAC|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 5 EDSSWG 10
EDS WG
Sbjct: 369 EDSDWG 374




11|SequenceR|60|51|PYLKENWDNE

>sp|AGLB2_PYRFU|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase 2|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PYLKENWD 8
P++ ENW+
Sbjct: 448 PFMNENWE 455


>sp|PGP_METS5|PHOSPHOGLYCOLATE phosphatase|Metallosphaera sedula (strain ATCC 51363

Query: 3 LKENWDNE 10
L+E+W NE
Sbjct: 99 LRESWQNE 106


>sp|RS6E_CALMQ|SMALL ribosomal subunit protein eS6|Caldivirga maquilingensis (strain

Query: 5 ENWDNE 10
ENWD E
Sbjct: 121 ENWDKE 126


>sp|TOP6A_NATPD|TYPE 2 DNA topoisomerase 6|Natronomonas pharaonis (strain ATCC 35678

Query: 2 YLKENWDNE 10
YL E+WD E
Sbjct: 103 YLSESWDEE 111


>sp|ISCS_METTE|CYSTEINE desulfurase IscS|Methanosarcina thermophila

Query: 1 PYLKENWDN 9
PY+ EN+ N
Sbjct: 38 PYMTENFGN 46


>sp|SECD_METKA|PROTEIN-EXPORT membrane protein SecD|Methanopyrus kandleri (strain AV19 /

Query: 2 YLKENW 7
++KENW
Sbjct: 6 WMKENW 11


>sp|SPSS2_METHJ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanospirillum hungatei JF-1 (strain ATCC

Query: 5 ENWDNE 10
+NWD+E
Sbjct: 345 QNWDDE 350


>sp|COFG_METMA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PYLKENWDNE 10
PY+K+ W +E
Sbjct: 297 PYVKKGWYSE 306


>sp|PELO_METMA|PROTEIN pelota homolog|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 LKENWDNE 10
+KE+W N+
Sbjct: 110 IKEHWKND 117


>sp|PELO_METBF|PROTEIN pelota homolog|Methanosarcina barkeri (strain Fusaro /

Query: 3 LKENWDNE 10
+KE+W N+
Sbjct: 110 IKEHWKND 117


>sp|TOP6A_HALSA|TYPE 2 DNA topoisomerase 6|Halobacterium salinarum (strain ATCC 700922

Query: 2 YLKENWD 8
YL E+WD
Sbjct: 101 YLSESWD 107


>sp|TOP6A_HALS3|TYPE 2 DNA topoisomerase 6|Halobacterium salinarum (strain ATCC 29341

Query: 2 YLKENWD 8
YL E+WD
Sbjct: 101 YLSESWD 107


>sp|PYRC_METMA|DIHYDROOROTASE mazei (strain ATCC BAA-159

Query: 3 LKENW 7
LKENW
Sbjct: 70 LKENW 74


>sp|PYRC_METAC|DIHYDROOROTASE acetivorans (strain ATCC 35395

Query: 3 LKENW 7
LKENW
Sbjct: 70 LKENW 74


>sp|SPSS_META3|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 5 ENWDNE 10
+NWDNE
Sbjct: 281 KNWDNE 286


>sp|RL15E_METST|LARGE ribosomal subunit protein eL15|Methanosphaera stadtmanae (strain

Query: 2 YLKENWDN 9
Y+KE W N
Sbjct: 9 YMKEAWKN 16


>sp|Y1441_METTH|UPF0285 protein MTH_1441|Methanothermobacter thermautotrophicus (strain

Query: 2 YLKENWDN 9
YL+ W+N
Sbjct: 146 YLETGWEN 153


>sp|PHP_SACS2|ARYLDIALKYLPHOSPHATASE solfataricus (strain ATCC 35092

Query: 1 PYLKENWDNE 10
P+LK N NE
Sbjct: 289 PFLKRNGVNE 298


>sp|Y758_METJA|UNCHARACTERIZED protein MJ0758|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YLKENWDNE 10
++KEN NE
Sbjct: 62 FIKENMSNE 70


>sp|PELO_METAC|PROTEIN pelota homolog|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 LKENWDNE 10
+KE W N+
Sbjct: 110 IKERWKND 117


>sp|TOP6A_HALMA|TYPE 2 DNA topoisomerase 6|Haloarcula marismortui (strain ATCC 43049

Query: 2 YLKENWD 8
YL E+WD
Sbjct: 103 YLSESWD 109


>sp|PGP1_SACS2|PHOSPHOGLYCOLATE phosphatase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 LKENWDNE 10
L++ W NE
Sbjct: 98 LRDTWQNE 105




12|SequenceR|65|56|GRKWVPYLKE

>sp|SYT_METBU|THREONINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 GRKWVPYL 8
GR+W+PY+
Sbjct: 563 GREWIPYV 570


>sp|SYT_METTP|THREONINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 GRKWVPYL 8
GR+WVPY+
Sbjct: 549 GREWVPYV 556


>sp|SYT_METMA|THREONINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GRKWVPYL 8
GR+WVPY+
Sbjct: 562 GREWVPYV 569


>sp|SYT_METAC|THREONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GRKWVPYL 8
GR+WVPY+
Sbjct: 563 GREWVPYV 570


>sp|SYT_METBF|THREONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 GRKWVPYL 8
GR+WVPY+
Sbjct: 563 GREWVPYV 570


>sp|PSB2_THEON|PROTEASOME subunit beta 2|Thermococcus onnurineus (strain NA1)

Query: 1 GRKWVPYL 8
G KW PYL
Sbjct: 96 GNKWFPYL 103


>sp|SYT_STAMF|THREONINE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 1 GRKWVPYL 8
GR+W+PY+
Sbjct: 544 GREWIPYI 551


>sp|SYT_METST|THREONINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 GRKWVPY 7
G++W+PY
Sbjct: 547 GKEWIPY 553


>sp|SYT_METJA|THREONINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GRKWVPYL 8
G++WVPY+
Sbjct: 548 GKEWVPYV 555


>sp|UPPP_PYRIL|UNDECAPRENYL-DIPHOSPHATASE islandicum (strain DSM 4184

Query: 1 GRKWVPYL 8
GRKW+ Y+
Sbjct: 78 GRKWLTYV 85


>sp|PSB1_THESM|PROTEASOME subunit beta 1|Thermococcus sibiricus (strain DSM 12597

Query: 1 GRKWVPYL 8
GRK++PY
Sbjct: 98 GRKYLPYF 105


>sp|SYT_METAR|THREONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 GRKWVPYL 8
G++W+PY+
Sbjct: 566 GKEWIPYV 573


>sp|SYT_METKA|THREONINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 GRKWVPYL 8
G +WVPY+
Sbjct: 551 GEEWVPYV 558


>sp|PSB1_PYRAB|PROTEASOME subunit beta 1|Pyrococcus abyssi (strain GE5 /

Query: 3 KWVPYL 8
KW PYL
Sbjct: 97 KWFPYL 102


>sp|PSB1_PYRHO|PROTEASOME subunit beta 1|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 KWVPYL 8
KW PYL
Sbjct: 97 KWFPYL 102


>sp|SYT_HYPBU|THREONINE--TRNA ligase|Hyperthermus butylicus (strain DSM 5456

Query: 1 GRKWVPYL 8
R+W+PY+
Sbjct: 549 AREWIPYI 556


>sp|GATD_METMA|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Methanosarcina mazei (strain ATCC

Query: 3 KWVPYLK 9
KW+P+++
Sbjct: 337 KWIPFIR 343


>sp|PSB1_SULTO|PROTEASOME subunit beta 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 KWVPYLKE 10
KW P++ E
Sbjct: 95 KWTPFISE 102


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 GRKWVPYL 8
G WVPY+
Sbjct: 539 GMDWVPYV 546


>sp|PPSA_AERPE|PHOSPHOENOLPYRUVATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 4 WVPYLK 9
WVPY+K
Sbjct: 418 WVPYMK 423


>sp|RFCL_METJA|REPLICATION factor C large subunit|Methanocaldococcus jannaschii (strain ATCC

Query: 2 RKWVPY 7
RKW PY
Sbjct: 322 RKWTPY 327


>sp|GRPE_PICTO|PROTEIN GrpE|Picrophilus torridus (strain ATCC 700027

Query: 1 GRKWVPYLKE 10
G+K+ PYL E
Sbjct: 125 GKKFDPYLNE 134


>sp|MER_METJA|5,10-METHYLENETETRAHYDROMETHANOPTERIN reductase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GRKWVPYLKE 10
G+K +P LKE
Sbjct: 322 GKKVIPALKE 331


>sp|PELO_NITMS|PROTEIN pelota homolog|Nitrosopumilus maritimus (strain SCM1)

Query: 2 RKWVPYLK 9
+KW+P+ K
Sbjct: 112 KKWLPFEK 119


>sp|PSB2_THEKO|PROTEASOME subunit beta 2|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 KWVPYL 8
KW PY+
Sbjct: 97 KWFPYM 102


>sp|SYT_METB6|THREONINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 GRKWVPYL 8
G WVPY+
Sbjct: 542 GMDWVPYV 549


>sp|SYT_METPE|THREONINE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 GRKWVPYL 8
G WVPY+
Sbjct: 537 GMDWVPYV 544


>sp|PSB2_THESM|PROTEASOME subunit beta 2|Thermococcus sibiricus (strain DSM 12597

Query: 3 KWVPYL 8
KW PY+
Sbjct: 97 KWFPYM 102


>sp|SYT_META3|THREONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 GRKWVPYL 8
G+ WVP++
Sbjct: 558 GKDWVPFV 565


>sp|SYS2_METVS|TYPE-2 serine--tRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 RKWVPYLKE 10
R W+P++KE
Sbjct: 427 RLWLPHIKE 435


>sp|SLAA_ACIAM|S-LAYER protein A|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 3 KWVPYLK 9
KW PY K
Sbjct: 389 KWNPYCK 395


>sp|PSB2_THEGJ|PROTEASOME subunit beta 2|Thermococcus gammatolerans (strain DSM 15229

Query: 3 KWVPYL 8
KW PY+
Sbjct: 98 KWFPYM 103


>sp|PSB1_PYRFU|PROTEASOME subunit beta 1|Pyrococcus furiosus (strain ATCC 43587

Query: 3 KWVPYL 8
+W PYL
Sbjct: 97 RWFPYL 102


>sp|SYS2_METM7|TYPE-2 serine--tRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 2 RKWVPYLKE 10
R W+P++KE
Sbjct: 427 RLWLPHIKE 435


>sp|SYS2_METM6|TYPE-2 serine--tRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 2 RKWVPYLKE 10
R W+P++KE
Sbjct: 427 RLWLPHIKE 435


>sp|SYG_AERPE|GLYCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 GRKWVPYLKE 10
GR++VP++ E
Sbjct: 430 GRRFVPHVVE 439


>sp|CBIT_THEVO|PROBABLE cobalt-precorrin-6B C(15)-methyltransferase

Query: 3 KWVPYLK 9
K+VP+LK
Sbjct: 132 KYVPFLK 138


>sp|GRPE_THEVO|PROTEIN GrpE|Thermoplasma volcanium (strain ATCC 51530

Query: 1 GRKWVPYLKE 10
G K+ PYL E
Sbjct: 129 GEKFDPYLHE 138


>sp|GATB_METAC|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanosarcina acetivorans (strain ATCC

Query: 4 WVPYLKE 10
W+P +KE
Sbjct: 287 WIPAIKE 293


>sp|FLAB5_THEKO|FLAGELLIN B5|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 KWVPYLK 9
KW PY K
Sbjct: 139 KWEPYYK 145


>sp|CETZ1_HALVD|TUBULIN-LIKE protein CetZ1|Haloferax volcanii (strain ATCC 29605

Query: 1 GRKWV 5
GRKW+
Sbjct: 314 GRKWI 318


>sp|ILVD_PYRAB|DIHYDROXY-ACID dehydratase|Pyrococcus abyssi (strain GE5 /

Query: 3 KWVPYLKE 10
KW P +KE
Sbjct: 521 KWKPKVKE 528


>sp|SYS2_METM5|TYPE-2 serine--tRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 2 RKWVPYLKE 10
R W+P++KE
Sbjct: 427 RLWLPHVKE 435


>sp|SYT_THEGJ|THREONINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 2 RKWVPYL 8
++WVPY+
Sbjct: 559 KEWVPYI 565


>sp|SYT_THEPD|THREONINE--TRNA ligase|Thermofilum pendens (strain DSM 2475

Query: 3 KWVPYL 8
KW+PY+
Sbjct: 543 KWIPYV 548


>sp|THII_THEAC|TRNA sulfurtransferase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 KWVPYLK 9
+W PY K
Sbjct: 221 RWAPYRK 227


>sp|RL2_METST|LARGE ribosomal subunit protein uL2|Methanosphaera stadtmanae (strain

Query: 1 GRKWVPYLK 9
GRK P+LK
Sbjct: 167 GRKEKPFLK 175


>sp|SYT_PYRHO|THREONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 RKWVPYL 8
++W+PY+
Sbjct: 558 KEWIPYI 564


>sp|SYT_PYRFU|THREONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 RKWVPYL 8
++W+PY+
Sbjct: 558 KEWIPYI 564


>sp|IDI_HALMA|ISOPENTENYL-DIPHOSPHATE Delta-isomerase|Haloarcula marismortui (strain ATCC 43049

Query: 1 GRKWVPY 7
G WVPY
Sbjct: 152 GLMWVPY 158


>sp|SYT_THESM|THREONINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 2 RKWVPYL 8
++W+PY+
Sbjct: 558 KEWIPYI 564


>sp|SYT_THEKO|THREONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 RKWVPYL 8
++W+PY+
Sbjct: 559 KEWIPYI 565


>sp|SYT_PYRAB|THREONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 RKWVPYL 8
++W+PY+
Sbjct: 558 KEWIPYI 564


>sp|SYT_METTH|THREONINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 GRKWVPYL 8
+ WVPY+
Sbjct: 540 AQDWVPYV 547


>sp|NIFD_METBA|NITROGENASE molybdenum-iron protein alpha chain|Methanosarcina barkeri

Query: 1 GRKWVPYLKE 10
GR+ +P +KE
Sbjct: 386 GRQIIPQIKE 395


>sp|IF2A_PYRHO|TRANSLATION initiation factor 2 subunit|Pyrococcus horikoshii (strain ATCC

Query: 3 KWVPYLKE 10
+W+P LKE
Sbjct: 158 EWLPVLKE 165


>sp|IF2A_PYRAB|TRANSLATION initiation factor 2 subunit|Pyrococcus abyssi (strain GE5 /

Query: 3 KWVPYLKE 10
+W+P LKE
Sbjct: 158 EWLPVLKE 165


>sp|IF2A_PYRFU|TRANSLATION initiation factor 2 subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 3 KWVPYLKE 10
+W+P LKE
Sbjct: 158 EWLPVLKE 165


>sp|RPO10_SULTO|DNA-DIRECTED RNA polymerase subunit Rpo10|Sulfurisphaera tokodaii (strain DSM

Query: 1 GRKWVPYL 8
G KW P++
Sbjct: 15 GDKWEPFI 22


>sp|GATB_METMA|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanosarcina mazei (strain ATCC

Query: 4 WVPYLKE 10
W+P +KE
Sbjct: 287 WIPAIKE 293


>sp|RL2_METS3|LARGE ribosomal subunit protein uL2|Methanobrevibacter smithii (strain

Query: 1 GRKWVPYLK 9
GRK P+LK
Sbjct: 167 GRKEKPFLK 175




13|SequenceR|70|61|KWRMDGRKWV

>sp|UVRB_METST|UVRABC system protein B|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 MDGRKW 9
M+GRKW
Sbjct: 311 MNGRKW 316


>sp|RAD50_PYRHO|DNA double-strand break repair Rad50|Pyrococcus horikoshii (strain ATCC

Query: 3 RMDGRKW 9
R+DGR+W
Sbjct: 99 RLDGREW 105


>sp|Y1815_ARCFU|UNCHARACTERIZED aminotransferase AF_1815|Archaeoglobus fulgidus (strain ATCC

Query: 2 WRMDGRK 8
W +DGRK
Sbjct: 46 WDLDGRK 52


>sp|CBIT_THEAC|PROBABLE cobalt-precorrin-6B C(15)-methyltransferase

Query: 3 RMDGRKWV 10
RM+G WV
Sbjct: 2 RMEGENWV 9


>sp|Y355_METJA|UNCHARACTERIZED protein MJ0355|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 RMDGRKWV 10
R DGR W+
Sbjct: 39 RFDGRMWI 46


>sp|SYW_PYRAR|TRYPTOPHAN--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 KWRMDGRKW 9
KW +GR W
Sbjct: 65 KWHGEGRPW 73


>sp|Y1127_METTP|PUTATIVE nickel insertion protein|Methanothrix thermoacetophila (strain DSM

Query: 2 WRMDGRK 8
WR+ GRK
Sbjct: 384 WRIAGRK 390


>sp|TFE_METST|TRANSCRIPTION factor E|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 WRMDGRK 8
WR D RK
Sbjct: 94 WRFDSRK 100


>sp|SYW_PYRAE|TRYPTOPHAN--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 KWRMDGRKW 9
KW +GR W
Sbjct: 65 KWHGEGRPW 73


>sp|Y4618_METAC|UPF0313 protein MA_4618|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 WRMDGRKW 9
W+M+ R W
Sbjct: 322 WKMEVRAW 329


>sp|GFO6_HALMA|D-XYLOSE 1-dehydrogenase [NADP(+)]|Haloarcula marismortui (strain ATCC 43049

Query: 1 KWRMDG 6
+WR+DG
Sbjct: 191 QWRLDG 196


>sp|FLUC_NITMS|FLUORIDE-SPECIFIC ion channel FluC|Nitrosopumilus maritimus (strain SCM1)

Query: 1 KWRMDGR 7
+W +DGR
Sbjct: 57 QWNLDGR 63


>sp|DP2L_METMJ|DNA polymerase II large subunit|Methanoculleus marisnigri (strain ATCC

Query: 5 DGRKWV 10
DGR+W+
Sbjct: 882 DGRRWM 887


>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1 (strain

Query: 1 KWRMDGRKWV 10
K +MDG W+
Sbjct: 264 KMKMDGWDWL 273


>sp|RRP41_ARCFU|EXOSOME complex component Rrp41|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 RMDGRKW 9
R+DGRK+
Sbjct: 17 RLDGRKF 23


>sp|RRP42_PYRAE|EXOSOME complex component Rrp42|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 KWRMDGR 7
K+R+DGR
Sbjct: 27 KYRVDGR 33


>sp|DP2L_METMA|DNA polymerase II large subunit|Methanosarcina mazei (strain ATCC

Query: 1 KWRMDGRKWV 10
K +MDG W+
Sbjct: 267 KLKMDGWDWL 276


>sp|DP2L_METAC|DNA polymerase II large subunit|Methanosarcina acetivorans (strain ATCC

Query: 1 KWRMDGRKWV 10
K +MDG W+
Sbjct: 267 KLKMDGWDWL 276


>sp|CDCH_HALSA|PROTEIN CdcH|Halobacterium salinarum (strain ATCC 700922

Query: 2 WRMDGRKW 9
WR D + W
Sbjct: 52 WRADRQDW 59


>sp|UPPP_PYRIL|UNDECAPRENYL-DIPHOSPHATASE islandicum (strain DSM 4184

Query: 5 DGRKWV 10
+GRKW+
Sbjct: 77 EGRKWL 82


>sp|SYW_PYRCJ|TRYPTOPHAN--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 KWRMDGRKW 9
KW +G+ W
Sbjct: 65 KWHGEGKPW 73


>sp|ASPD_ARCFU|L-ASPARTATE dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 WRMDGRKWV 10
WR GRK V
Sbjct: 136 WRQFGRKGV 144


>sp|RL2_AERPE|LARGE ribosomal subunit protein uL2|Aeropyrum pernix (strain ATCC 700893

Query: 1 KWRMDGRKW 9
KW++ RKW
Sbjct: 178 KWKVKARKW 186


>sp|T2M3_METJA|TYPE II restriction enzyme MjaIII|Methanocaldococcus jannaschii (strain

Query: 2 WRMDGRKW 9
W DG+ W
Sbjct: 249 WITDGKGW 256




14|SequenceR|75|66|GKWSNKWRMD

>sp|CARA_METKA|CARBAMOYL phosphate synthase small chain|Methanopyrus kandleri (strain AV19 /

Query: 1 GKWSNKWRMD 10
G W KW D
Sbjct: 343 GPWDTKWVFD 352


>sp|AGLU_SACS9|ALPHA-GLUCOSIDASE solfataricus (strain 98/2) (Sulfolobus

Query: 1 GKWSNKW 7
GKW N W
Sbjct: 575 GKWYNYW 581


>sp|AGLU_SACS2|ALPHA-GLUCOSIDASE solfataricus (strain ATCC 35092

Query: 1 GKWSNKW 7
GKW N W
Sbjct: 575 GKWYNYW 581


>sp|RPO2C_METVS|DNA-DIRECTED RNA polymerase subunit Rpo2C|Methanococcus vannielii (strain ATCC

Query: 6 KWRMD 10
KWRMD
Sbjct: 170 KWRMD 174


>sp|QOXM_SULAC|QUINOL oxidase subunit 1/3|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 WSNKWRMD 10
WS KW D
Sbjct: 397 WSGKWYND 404


>sp|RF1_METMA|PEPTIDE chain release factor subunit|Methanosarcina mazei (strain ATCC

Query: 2 KWSNKWR 8
KW+ +W+
Sbjct: 338 KWTRRWK 344


>sp|RF11_METAC|PEPTIDE chain release factor subunit|Methanosarcina acetivorans (strain

Query: 2 KWSNKWR 8
KW+ +W+
Sbjct: 338 KWTRRWK 344


>sp|SYL_THEVO|LEUCINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 KWSNKWRMD 10
KW N W D
Sbjct: 22 KWQNAWERD 30


>sp|SYM_HALWD|METHIONINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 WSNKWR 8
W N WR
Sbjct: 299 WKNAWR 304


>sp|SYL_THEAC|LEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 GKWSNKWRMD 10
KW N W D
Sbjct: 21 AKWQNAWDRD 30


>sp|RFCL_METST|REPLICATION factor C large subunit|Methanosphaera stadtmanae (strain ATCC

Query: 3 WSNKW 7
W+NKW
Sbjct: 28 WANKW 32


>sp|SYE_PYRAB|GLUTAMATE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 5 NKWRM 9
NKWRM
Sbjct: 503 NKWRM 507


>sp|SYE_PYRFU|GLUTAMATE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 5 NKWRM 9
NKWRM
Sbjct: 504 NKWRM 508


>sp|RBL_PYRFU|RIBULOSE bisphosphate carboxylase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GKWSNKWRM 9
G W+ W+M
Sbjct: 48 GTWTTLWKM 56


>sp|AROD_IGNH4|3-DEHYDROQUINATE dehydratase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 GKWSNKWR 8
G WS WR
Sbjct: 70 GVWSPPWR 77


>sp|FAU1_SULTO|PROBABLE ribonuclease FAU-1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 GKWSNKWRMD 10
GK+S WR D
Sbjct: 127 GKYSMVWRGD 136


>sp|SYL_METTH|LEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 KWSNKWR 8
KW ++WR
Sbjct: 6 KWRDRWR 12


>sp|DPOL_THEAG|DNA polymerase|Thermococcus aggregans

Query: 4 SNKWRMD 10
+NKW++D
Sbjct: 651 NNKWKID 657


>sp|FAU1_THEKO|PROBABLE ribonuclease FAU-1|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 GKWSNKWR 8
GKW WR
Sbjct: 196 GKWGVLWR 203


>sp|SYL1_METS5|LEUCINE--TRNA ligase 1|Metallosphaera sedula (strain ATCC 51363

Query: 2 KWSNKW 7
KW KW
Sbjct: 12 KWQEKW 17


>sp|EF2_KORCO|ELONGATION factor 2|Korarchaeum cryptofilum (strain OPF8)

Query: 2 KWSNKWRMD 10
KW KW D
Sbjct: 190 KWKVKWDND 198


>sp|TMCA_THES3|TRNA(MET) cytidine acetyltransferase TmcA|Thermococcus sp. (strain AM4)

Query: 2 KWSNKW 7
KW N W
Sbjct: 178 KWKNMW 183


>sp|PTH_CALMQ|PEPTIDYL-TRNA hydrolase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 GKWSNKW 7
G W N W
Sbjct: 41 GDWVNAW 47


>sp|SYL2_SACS2|LEUCINE--TRNA ligase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 KWSNKWRMD 10
KW +W D
Sbjct: 7 KWQTRWEED 15


>sp|SYL_AERPE|LEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 KWSNKWR 8
KW +WR
Sbjct: 10 KWQERWR 16


>sp|SYL_METAC|LEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 KWSNKW 7
KW KW
Sbjct: 13 KWQKKW 18


>sp|SYL_METMA|LEUCINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 KWSNKW 7
KW KW
Sbjct: 13 KWQKKW 18


>sp|SYL_META3|LEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 KWSNKWRMD 10
KW +W D
Sbjct: 11 KWQKRWEED 19


>sp|SYL_STAMF|LEUCINE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 1 GKWSNKW 7
KW +KW
Sbjct: 15 AKWQSKW 21


>sp|SYL_METBF|LEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 KWSNKW 7
KW KW
Sbjct: 13 KWQKKW 18


>sp|KPTA1_ARCFU|PROBABLE RNA 2'-phosphotransferase 1|Archaeoglobus fulgidus (strain ATCC

Query: 2 KWSNKW 7
KW+N W
Sbjct: 75 KWANIW 80


>sp|RBL_PYRHO|RIBULOSE bisphosphate carboxylase|Pyrococcus horikoshii (strain ATCC

Query: 1 GKWSNKWRM 9
G W+ W++
Sbjct: 53 GTWTTLWKL 61


>sp|SYL_METBU|LEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 KWSNKW 7
KW KW
Sbjct: 13 KWQQKW 18


>sp|SYV_METTH|VALINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 KWSNKWR 8
KW KW+
Sbjct: 17 KWQKKWQ 23


>sp|Y1468_METJA|UNCHARACTERIZED protein MJ1468|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GKWSNKWRMD 10
G W W+ D
Sbjct: 320 GAWGEYWKWD 329


>sp|SYL_PYRNV|LEUCINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 KWSNKWR 8
+W +WR
Sbjct: 14 RWQRRWR 20


>sp|DTDA_CALMQ|D-AMINOACYL-TRNA deacylase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 GKWSNKWR 8
G SN+WR
Sbjct: 151 GSTSNEWR 158




15|SequenceR|80|71|AQVRGGKWSN

>sp|MALQ_THELN|4-ALPHA-GLUCANOTRANSFERASE litoralis (strain ATCC 51850

Query: 3 VRGGKWSN 10
VRGG W N
Sbjct: 308 VRGGIWKN 315


>sp|MALQ_THEKO|4-ALPHA-GLUCANOTRANSFERASE kodakarensis (strain ATCC BAA-918

Query: 3 VRGGKWSN 10
VRGG W N
Sbjct: 308 VRGGIWKN 315


>sp|AMYA_PYRHO|ALPHA-AMYLASE horikoshii (strain ATCC 700860

Query: 3 VRGGKWSN 10
VRGG W N
Sbjct: 308 VRGGIWKN 315


>sp|AMYA_PYRFU|ALPHA-AMYLASE furiosus (strain ATCC 43587

Query: 3 VRGGKWSN 10
VRGG W N
Sbjct: 309 VRGGIWKN 316


>sp|AMYA_PYRAB|ALPHA-AMYLASE abyssi (strain GE5 /

Query: 3 VRGGKWSN 10
VRGG W N
Sbjct: 308 VRGGIWKN 315


>sp|THSB_SULAC|CHAPERONIN subunit beta|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 AQVRGGKW 8
A++RG KW
Sbjct: 193 AELRGDKW 200


>sp|HYPA_ARCFU|HYDROGENASE maturation factor HypA|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 AQVRGGK 7
AQV+GGK
Sbjct: 93 AQVKGGK 99


>sp|THSB_SACS2|CHAPERONIN subunit beta|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 AQVRGGKW 8
A++RG KW
Sbjct: 192 AELRGDKW 199


>sp|THSB_SACSH|CHAPERONIN subunit beta|Saccharolobus shibatae (strain ATCC 51178

Query: 1 AQVRGGKW 8
A++RG KW
Sbjct: 192 AELRGDKW 199


>sp|RL10_AERPE|LARGE ribosomal subunit protein uL10|Aeropyrum pernix (strain ATCC 700893

Query: 2 QVRGGK 7
QVRGGK
Sbjct: 154 QVRGGK 159


>sp|NPD_THESM|NAD-DEPENDENT protein deacylase|Thermococcus sibiricus (strain DSM 12597

Query: 4 RGGKWSN 10
RGG W N
Sbjct: 35 RGGLWEN 41


>sp|IXTPA_KORCO|DITP/XTP pyrophosphatase|Korarchaeum cryptofilum (strain OPF8)

Query: 2 QVRGGKW 8
+VRGG W
Sbjct: 130 EVRGGGW 136


>sp|Y057_METKA|UPF0215 protein MK0057|Methanopyrus kandleri (strain AV19 /

Query: 3 VRGGKW 8
+RGG+W
Sbjct: 34 MRGGQW 39


>sp|SYS_HALMA|SERINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 4 RGGKW 8
RGG+W
Sbjct: 363 RGGRW 367


>sp|DNPH1_THEPD|PUTATIVE 2'-deoxynucleoside 5'-phosphate N-hydrolase 1|Thermofilum pendens

Query: 1 AQVRGGKWSN 10
A +RG W N
Sbjct: 107 AMIRGITWEN 116


>sp|NADB_PYRFU|L-ASPARTATE oxidase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 VRGGKWSN 10
+RGGK+ N
Sbjct: 63 IRGGKYLN 70


>sp|THSB_SULTO|CHAPERONIN subunit beta|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 AQVRGGKW 8
A++RG +W
Sbjct: 193 AELRGDRW 200


>sp|G1PDH_METST|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanosphaera stadtmanae (strain ATCC

Query: 3 VRGGKWSN 10
++GG W N
Sbjct: 278 LQGGDWQN 285


>sp|Y2580_AERPE|UNCHARACTERIZED protein APE_2580|Aeropyrum pernix (strain ATCC 700893

Query: 4 RGGKWS 9
RGG WS
Sbjct: 150 RGGMWS 155


>sp|RTCA_METBU|RNA 3'-terminal phosphate cyclase|Methanococcoides burtonii (strain

Query: 2 QVRGGKWS 9
++RGGK++
Sbjct: 79 EIRGGKYT 86


>sp|SECD_HALWD|PROTEIN-EXPORT membrane protein SecD|Haloquadratum walsbyi (strain DSM 16790

Query: 3 VRGGKWS 9
+RGG W+
Sbjct: 303 LRGGSWA 309


>sp|RL2_NATPD|LARGE ribosomal subunit protein uL2|Natronomonas pharaonis (strain ATCC

Query: 4 RGGKWS 9
RGGKW
Sbjct: 183 RGGKWP 188




16|SequenceR|85|76|DSTLVAQVRG

>sp|KDGK_SACS2|2-DEHYDRO-3-DEOXYGLUCONOKINASE/2-DEHYDRO-3-DEOXYGALACTONOKINASE solfataricus (strain ATCC 35092

Query: 2 STLVAQVRG 10
STLV VRG
Sbjct: 285 STLVITVRG 293




17|SequenceR|90|81|VLAPSDSTLV

>sp|GVPF2_HALSA|GAS vesicle protein F2|Halobacterium salinarum (strain ATCC 700922

Query: 1 VLAPSDSTLV 10
VLAP D T V
Sbjct: 120 VLAPGDDTAV 129


>sp|RFCL_PYRAR|REPLICATION factor C large subunit|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 VLAPSDSTLV 10
VLA SDS +V
Sbjct: 395 VLAKSDSKIV 404




18|SequenceR|95|86|TINSGVLAPS

>sp|ADEC_ARCFU|ADENINE deaminase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 INSGVLAPS 10
IN+G++APS
Sbjct: 313 INAGLIAPS 321


>sp|RNZ_PYRHO|RIBONUCLEASE Z|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 INSGVLAPS 10
+NSG APS
Sbjct: 102 LNSGYFAPS 110


>sp|RNZ_PYRAB|RIBONUCLEASE Z|Pyrococcus abyssi (strain GE5 /

Query: 2 INSGVLAPS 10
+NSG APS
Sbjct: 102 LNSGYFAPS 110


>sp|NUOCD_HALVD|NADH-QUINONE oxidoreductase subunit C/D|Haloferax volcanii (strain ATCC 29605

Query: 1 TINSGVLAP 9
T+ +GVL+P
Sbjct: 385 TVGTGVLSP 393


>sp|DP2L_THEAC|DNA polymerase II large subunit|Thermoplasma acidophilum (strain ATCC

Query: 2 INSGVLAPS 10
INSGVL S
Sbjct: 933 INSGVLVSS 941


>sp|EF2_CENSY|ELONGATION factor 2|Cenarchaeum symbiosum (strain A)

Query: 3 NSGVLAPS 10
+SG++APS
Sbjct: 43 HSGIIAPS 50




19|SequenceR|100|91|LNVAFTINSG

>sp|Y528_PYRFU|PUTATIVE ABC transporter ATP-binding protein|Pyrococcus furiosus (strain

Query: 2 NVAFTINSG 10
NV+FT+N G
Sbjct: 24 NVSFTVNEG 32




20|SequenceR|105|96|CRPFILNVAF

>sp|SPSS_METMP|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain DSM 14266

Query: 3 PFILNVAF 10
PF+LN A+
Sbjct: 188 PFLLNCAY 195


>sp|SPSS_METM7|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain C7 /

Query: 3 PFILNVAF 10
PF+LN A+
Sbjct: 188 PFLLNCAY 195


>sp|SPSS_METM6|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain C6 /

Query: 3 PFILNVAF 10
PF+LN A+
Sbjct: 188 PFLLNCAY 195


>sp|SPSS_METM5|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus maripaludis (strain C5 /

Query: 3 PFILNVAF 10
PF+LN A+
Sbjct: 188 PFLLNCAY 195


>sp|SPSS_META3|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 PFILNVAF 10
PF+LN A+
Sbjct: 191 PFLLNCAY 198


>sp|SYE_PYRNV|GLUTAMATE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 RPFILNVAF 10
RP ILN A+
Sbjct: 119 RPAILNYAY 127


>sp|SYE_PYRIL|GLUTAMATE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 RPFILNVAF 10
RP ILN A+
Sbjct: 119 RPAILNYAY 127


>sp|SYE_PYRCJ|GLUTAMATE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 RPFILNVAF 10
RP ILN A+
Sbjct: 119 RPAILNYAY 127


>sp|SYE_PYRAR|GLUTAMATE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 RPFILNVAF 10
RP ILN A+
Sbjct: 119 RPAILNYAY 127


>sp|SYE_PYRAE|GLUTAMATE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 RPFILNVAF 10
RP ILN A+
Sbjct: 119 RPAILNYAY 127


>sp|RS17_SULTO|SMALL ribosomal subunit protein uS17|Sulfurisphaera tokodaii (strain DSM

Query: 1 CRPFILNVAF 10
CRP +V+F
Sbjct: 98 CRPIAKSVSF 107




21|SequenceR|110|101|ADEKQCRPFI

>sp|RGYR_ARCFU|REVERSE gyrase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 QCRPF 9
QCRPF
Sbjct: 891 QCRPF 895


>sp|RPIA_METB6|RIBOSE-5-PHOSPHATE isomerase A|Methanoregula boonei (strain DSM 21154

Query: 6 CRPFI 10
CRPFI
Sbjct: 158 CRPFI 162


>sp|DTDA_SACI7|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 DEKQCRPFI 10
DE CR +I
Sbjct: 150 DETDCRDYI 158


>sp|DTDA_SACI6|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 DEKQCRPFI 10
DE CR +I
Sbjct: 150 DETDCRDYI 158


>sp|DTDA_SACI4|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 DEKQCRPFI 10
DE CR +I
Sbjct: 150 DETDCRDYI 158


>sp|DTDA_SACI3|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 2 DEKQCRPFI 10
DE CR +I
Sbjct: 150 DETDCRDYI 158


>sp|DTDA_SACI2|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 DEKQCRPFI 10
DE CR +I
Sbjct: 150 DETDCRDYI 158


>sp|DTDA_SACI1|D-AMINOACYL-TRNA deacylase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 DEKQCRPFI 10
DE CR +I
Sbjct: 150 DETDCRDYI 158


>sp|Y2221_ARCFU|UNCHARACTERIZED protein AF_2221|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 QCRPFI 10
QC PFI
Sbjct: 182 QCNPFI 187


>sp|ILVD_METKA|DIHYDROXY-ACID dehydratase|Methanopyrus kandleri (strain AV19 /

Query: 2 DEKQCRPFI 10
DE+ RPF+
Sbjct: 26 DEEMDRPFV 34




22|SequenceR|115|106|VINGNADEKQ

>sp|SYA_METBF|ALANINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 VINGNADEKQ 10
++NG DEK+
Sbjct: 594 IVNGKVDEKR 603


>sp|RS10_NITMS|SMALL ribosomal subunit protein uS10|Nitrosopumilus maritimus (strain

Query: 1 VINGNADEK 9
+IN NAD+K
Sbjct: 73 IININADDK 81


>sp|TRPE_METTH|ANTHRANILATE synthase component 1|Methanothermobacter thermautotrophicus (strain

Query: 2 INGNAD 7
+NGNAD
Sbjct: 395 LNGNAD 400


>sp|IF2P_PYRAB|PROBABLE translation initiation factor IF-2|Pyrococcus abyssi (strain GE5 /

Query: 2 INGNADEK 9
I+GN DEK
Sbjct: 133 IHGNEDEK 140


>sp|TRPE_METTM|ANTHRANILATE synthase component 1|Methanothermobacter marburgensis (strain ATCC

Query: 2 INGNAD 7
+NGNAD
Sbjct: 397 LNGNAD 402


>sp|MDH_SULAC|MALATE dehydrogenase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 VINGNADE 8
++NG ADE
Sbjct: 21 IVNGYADE 28


>sp|CCA_THEAI|CCA-ADDING enzyme|Thermoplasma acidophilum

Query: 2 INGNADEK 9
+NG+ DEK
Sbjct: 139 VNGHLDEK 146


>sp|DPOL_PYRHO|DNA polymerase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 INGNADE 8
+NGNA+E
Sbjct: 858 LNGNAEE 864


>sp|CCA_THEAC|CCA-ADDING enzyme|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 INGNADEK 9
+NG+ DEK
Sbjct: 139 VNGHLDEK 146




23|SequenceR|120|111|CNKEYVINGN

>sp|MCRA_METAC|METHYL-COENZYME M reductase subunit alpha|Methanosarcina acetivorans (strain ATCC

Query: 2 NKEYVINGN 10
+K+YVIN N
Sbjct: 191 DKQYVINVN 199


>sp|CARB_THEVO|CARBAMOYL phosphate synthase large chain|Thermoplasma volcanium (strain ATCC

Query: 1 CNKEYVINGN 10
CN ++ ++GN
Sbjct: 281 CNIQFALDGN 290


>sp|IPK_THEAC|ISOPENTENYL phosphate kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 NKEYVINGN 10
N Y+INGN
Sbjct: 218 NGVYLINGN 226


>sp|SEPS_METKA|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 NKEYVINGN 10
N+ YV++GN
Sbjct: 441 NRVYVLDGN 449


>sp|HIS8_SULTO|HISTIDINOL-PHOSPHATE aminotransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 NKEYVING 9
N+EY++NG
Sbjct: 280 NREYLLNG 287


>sp|Y2001_METTM|UNCHARACTERIZED protein MTBMA_p00010|Methanothermobacter marburgensis (strain ATCC

Query: 1 CNKEYVINGN 10
CN Y I GN
Sbjct: 637 CNPVYTILGN 646


>sp|PGMUT_SULTO|PHOSPHOGLUCOSAMINE/PHOSPHOGALACTOSAMINE mutase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 KEYVINGN 10
K Y INGN
Sbjct: 198 KIYTINGN 205


>sp|DP2S_PYRFU|DNA polymerase II small subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 2 NKEYVINGN 10
N+E V NGN
Sbjct: 130 NEELVSNGN 138


>sp|SYA_SACS2|ALANINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 KEYVINGN 10
K Y INGN
Sbjct: 804 KPYEINGN 811


>sp|RPO1N_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo1N|Sulfolobus acidocaldarius (strain ATCC

Query: 3 KEYVING 9
++Y+ING
Sbjct: 362 RQYIING 368


>sp|SYA_SACI6|ALANINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 3 KEYVINGN 10
K Y INGN
Sbjct: 804 KPYEINGN 811


>sp|SYA_SACI4|ALANINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 3 KEYVINGN 10
K Y INGN
Sbjct: 804 KPYEINGN 811


>sp|SYA_SACI3|ALANINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 3 KEYVINGN 10
K Y INGN
Sbjct: 804 KPYEINGN 811


>sp|SYA_SACI2|ALANINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 3 KEYVINGN 10
K Y INGN
Sbjct: 804 KPYEINGN 811


>sp|SYA_SACI1|ALANINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 3 KEYVINGN 10
K Y INGN
Sbjct: 804 KPYEINGN 811


>sp|TRPD_METS3|ANTHRANILATE phosphoribosyltransferase|Methanobrevibacter smithii (strain ATCC

Query: 1 CNKEYVINGN 10
C+KE ++ GN
Sbjct: 257 CSKEDLVGGN 266


>sp|PURP_META3|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanococcus aeolicus (strain ATCC

Query: 2 NKEYVINGN 10
N YVI+GN
Sbjct: 250 NPSYVISGN 258


>sp|CARB_METBF|CARBAMOYL phosphate synthase large chain|Methanosarcina barkeri (strain

Query: 1 CNKEYVINGN 10
C K YV+ N
Sbjct: 828 CGKVYVLEAN 837


>sp|RS4E_METKA|SMALL ribosomal subunit protein eS4|Methanopyrus kandleri (strain AV19 /

Query: 2 NKEYVINGN 10
NK YV GN
Sbjct: 132 NKTYVRGGN 140


>sp|T1S2_METJA|TYPE I restriction enzyme MjaVIII|Methanocaldococcus jannaschii

Query: 2 NKEYVINGN 10
NKE ++N N
Sbjct: 75 NKEIIVNEN 83


>sp|PURP_METJA|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanocaldococcus jannaschii (strain

Query: 1 CNKEYVINGN 10
N YVI GN
Sbjct: 249 INPSYVITGN 258


>sp|RFCS_PYRAB|REPLICATION factor C small subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 CNKEYVING 9
C K Y NG
Sbjct: 1059 CGKRYNFNG 1067


>sp|CMR5_SACS2|CRISPR system CMR subunit Cmr5|Saccharolobus solfataricus (strain ATCC

Query: 2 NKEYVIN 8
NKE++IN
Sbjct: 108 NKEFLIN 114




24|SequenceR|125|116|GAENRCNKEY

>sp|DP2L_PYRHO|DNA polymerase II large subunit|Pyrococcus horikoshii (strain ATCC

Query: 5 RCNKEY 10
RCN EY
Sbjct: 730 RCNAEY 735


>sp|DP2L_PYRAB|DNA polymerase II large subunit|Pyrococcus abyssi (strain GE5 /

Query: 5 RCNKEY 10
RCN EY
Sbjct: 733 RCNAEY 738


>sp|CAS10_METJA|CRISPR system single-strand-specific deoxyribonuclease

Query: 1 GAENRC 6
G+ENRC
Sbjct: 423 GSENRC 428


>sp|DADD_METBU|5'-DEOXYADENOSINE deaminase|Methanococcoides burtonii (strain DSM 6242

Query: 2 AENRCNKEY 10
A N C+KE+
Sbjct: 185 APNTCSKEF 193


>sp|KTHY_METS3|PROBABLE thymidylate kinase|Methanobrevibacter smithii (strain ATCC 35061

Query: 4 NRCNKE 9
NRC+KE
Sbjct: 130 NRCSKE 135


>sp|PROA_METAC|GAMMA-GLUTAMYL phosphate reductase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GAENRCNKE 9
G E RC+K+
Sbjct: 287 GVELRCDKD 295


>sp|Y1128_METJA|UNCHARACTERIZED protein MJ1128|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 NRCNKEY 10
+RCNK Y
Sbjct: 273 HRCNKHY 279


>sp|ALAXS_PYRHO|ALANYL-TRNA editing protein AlaX-S|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 NRCNKEY 10
N CNKE+
Sbjct: 114 NACNKEH 120




25|SequenceR|130|121|PDASLGAENR

>sp|MTD_METKA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanopyrus

Query: 1 PDASLGA 7
PDA LGA
Sbjct: 121 PDAMLGA 127




26|SequenceR|135|126|WNYVYPDASL

>sp|CPGS_METS3|CYCLIC 2,3-diphosphoglycerate synthetase|Methanobrevibacter smithii

Query: 2 NYVYPDAS 9
NY YPD S
Sbjct: 434 NYKYPDLS 441


>sp|Y912_METJA|UNCHARACTERIZED protein MJ0912|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 WNYVYPD 7
W Y++PD
Sbjct: 131 WEYLFPD 137


>sp|Y394_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 3 YVYPDASL 10
Y YPD +L
Sbjct: 14 YTYPDGTL 21


>sp|DHYS_SACS2|PROBABLE deoxyhypusine synthase|Saccharolobus solfataricus (strain ATCC

Query: 1 WNYVYPDA 8
WN + PDA
Sbjct: 283 WNKIRPDA 290


>sp|GATB_METMA|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanosarcina mazei (strain ATCC

Query: 2 NYVYPD 7
NY YPD
Sbjct: 86 NYFYPD 91


>sp|GATB_METHJ|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanospirillum hungatei JF-1 (strain

Query: 2 NYVYPD 7
NY YPD
Sbjct: 82 NYFYPD 87


>sp|GATB_METBF|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanosarcina barkeri (strain Fusaro

Query: 2 NYVYPD 7
NY YPD
Sbjct: 86 NYFYPD 91


>sp|GATB_METB6|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanoregula boonei (strain DSM 21154

Query: 2 NYVYPD 7
NY YPD
Sbjct: 82 NYFYPD 87


>sp|GATB_METAC|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanosarcina acetivorans (strain

Query: 2 NYVYPD 7
NY YPD
Sbjct: 86 NYFYPD 91


>sp|GATB_HALSA|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Halobacterium salinarum (strain ATCC

Query: 2 NYVYPD 7
NY YPD
Sbjct: 88 NYFYPD 93


>sp|GATB_ARCFU|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Archaeoglobus fulgidus (strain ATCC

Query: 2 NYVYPD 7
NY YPD
Sbjct: 81 NYFYPD 86


>sp|DHYS_PYRCJ|PROBABLE deoxyhypusine synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 YVYPDASL 10
YVY DA+L
Sbjct: 276 YVYADATL 283


>sp|Y1297_METTP|UPF0280 protein Mthe_1297|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 NYVYPDASL 10
N V PDASL
Sbjct: 184 NAVTPDASL 192


>sp|GATB_NATPD|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Natronomonas pharaonis (strain ATCC

Query: 2 NYVYPD 7
NY YPD
Sbjct: 90 NYYYPD 95


>sp|GATB_METBU|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanococcoides burtonii (strain DSM

Query: 2 NYVYPD 7
NY YPD
Sbjct: 86 NYYYPD 91


>sp|GATB_HALWD|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Haloquadratum walsbyi (strain DSM

Query: 2 NYVYPD 7
NY YPD
Sbjct: 89 NYYYPD 94


>sp|GATB_HALMA|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Haloarcula marismortui (strain ATCC

Query: 2 NYVYPD 7
NY YPD
Sbjct: 89 NYYYPD 94


>sp|GLCDH_THEAC|GLUCOSE 1-dehydrogenase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 WNYVYPDA 8
WN +PDA
Sbjct: 322 WNRRHPDA 329


>sp|RNP2_METTH|RIBONUCLEASE P protein component 2|Methanothermobacter thermautotrophicus

Query: 1 WNYVYPDA 8
W + +PDA
Sbjct: 58 WRFDFPDA 65


>sp|ADEC_STAMF|ADENINE deaminase|Staphylothermus marinus (strain ATCC 43588

Query: 2 NYVYPDASL 10
NY YP+ +L
Sbjct: 385 NYKYPEETL 393


>sp|GMHB_THEVO|PROBABLE D-glycero-D-manno-heptose-1,7-bisphosphate

Query: 3 YVYPDA 8
++YPDA
Sbjct: 26 FIYPDA 31


>sp|METE_PYRFU|METHIONINE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 WNYVYPDASL 10
W Y+ PD L
Sbjct: 287 WVYINPDCGL 296


>sp|GATB_SACS2|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Saccharolobus solfataricus (strain

Query: 2 NYVYPDAS 9
+Y YPD S
Sbjct: 79 HYFYPDMS 86


>sp|RTCB_PYRAE|TRNA-SPLICING ligase RtcB|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 WNYVYPDA 8
W+ V PDA
Sbjct: 61 WSIVLPDA 68


>sp|AAT_METJA|PROBABLE aspartate aminotransferase|Methanocaldococcus jannaschii (strain

Query: 3 YVYPDAS 9
Y++PD S
Sbjct: 313 YIFPDVS 319


>sp|Y1479_METJA|UNCHARACTERIZED aminotransferase MJ1479|Methanocaldococcus jannaschii (strain ATCC

Query: 1 WNYVYPD 7
+NY YPD
Sbjct: 152 YNYWYPD 158


>sp|Y1747_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 1 WNYVYPDAS 9
+NY Y DA+
Sbjct: 18 YNYPYSDAA 26


>sp|CISY_HALVD|CITRATE synthase|Haloferax volcanii (strain ATCC 29605

Query: 2 NYVYPDASL 10
+YV PD SL
Sbjct: 149 DYVEPDESL 157


>sp|METE_PYRAB|METHIONINE synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 WNYVYPDASL 10
W Y+ PD L
Sbjct: 287 WLYINPDCGL 296




27|SequenceR|140|131|ESWATWNYVY

>sp|RL30_CALMQ|LARGE ribosomal subunit protein uL30|Caldivirga maquilingensis (strain

Query: 1 ESWATW 6
ESWATW
Sbjct: 65 ESWATW 70


>sp|FLAB3_METVS|FLAGELLIN B3|Methanococcus vannielii (strain ATCC 35089

Query: 1 ESWATWNY 8
E+WAT NY
Sbjct: 129 ETWATGNY 136


>sp|ARLY_SULTO|ARGININOSUCCINATE lyase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 6 WNYVY 10
WNY+Y
Sbjct: 169 WNYIY 173


>sp|Y565_METJA|UNCHARACTERIZED protein MJ0565|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ESWATWNY 8
E WA W +
Sbjct: 111 EDWADWGF 118


>sp|RNH2_THEPD|RIBONUCLEASE HII|Thermofilum pendens (strain DSM 2475

Query: 1 ESWATW 6
+ WATW
Sbjct: 204 KEWATW 209


>sp|FILI_METH6|METHANOGENESIS regulatory histidine kinase FilI|Methanothrix harundinacea

Query: 1 ESWATWN 7
E W WN
Sbjct: 65 EDWGHWN 71


>sp|PELO_METS3|PROTEIN pelota homolog|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 ESWATW 6
E WA W
Sbjct: 115 EKWANW 120


>sp|PGP_PYRAB|PHOSPHOGLYCOLATE phosphatase|Pyrococcus abyssi (strain GE5 /

Query: 1 ESWATWNYV 9
E W WN +
Sbjct: 85 EEWILWNEI 93


>sp|MCRY_METTM|METHYL-COENZYME M reductase II subunit|Methanothermobacter marburgensis (strain

Query: 3 WATWN 7
WA WN
Sbjct: 299 WALWN 303


>sp|MCRY_METTH|METHYL-COENZYME M reductase II subunit|Methanothermobacter thermautotrophicus

Query: 3 WATWN 7
WA WN
Sbjct: 299 WALWN 303


>sp|MCRY_METJA|METHYL-COENZYME M reductase II subunit|Methanocaldococcus jannaschii (strain ATCC

Query: 3 WATWN 7
WA WN
Sbjct: 300 WALWN 304


>sp|MCRY_METFV|METHYL-COENZYME M reductase II subunit|Methanothermus fervidus (strain ATCC 43054

Query: 3 WATWN 7
WA WN
Sbjct: 299 WALWN 303


>sp|PGP_PYRHO|PHOSPHOGLYCOLATE phosphatase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 ESWATWNYV 9
E W WN +
Sbjct: 85 EEWILWNEI 93


>sp|ENO_METAR|ENOLASE arvoryzae (strain DSM 22066

Query: 1 ESWATWNYVY 10
E W NYVY
Sbjct: 233 ELWDGNNYVY 242


>sp|PURL_PYRAB|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrococcus abyssi (strain GE5 /

Query: 6 WNYVY 10
WNY+Y
Sbjct: 696 WNYMY 700


>sp|LYSJ_PYRAB|PUTATIVE [LysW]-aminoadipate semialdehyde/glutamate semialdehyde

Query: 3 WATWNYVY 10
W + YVY
Sbjct: 78 WVNFEYVY 85


>sp|TRM56_HALWD|TRNA (cytidine(56)-2'-O)-methyltransferase|Haloquadratum walsbyi (strain

Query: 3 WATWN 7
WA WN
Sbjct: 126 WADWN 130


>sp|Y978_PYRFU|UPF0252 protein PF0978|Pyrococcus furiosus (strain ATCC 43587

Query: 1 ESWATWN 7
E W WN
Sbjct: 67 EEWTIWN 73


>sp|MTRD_METMA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit D|Methanosarcina mazei (strain ATCC

Query: 4 ATWNYVY 10
TW YVY
Sbjct: 95 GTWIYVY 101


>sp|RL30_IGNH4|LARGE ribosomal subunit protein uL30|Ignicoccus hospitalis (strain

Query: 1 ESWATWNYV 9
++W TW +
Sbjct: 54 QAWITWGEI 62


>sp|QOX1_SULAC|QUINOL oxidase subunit 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 ESWATWN 7
E WA WN
Sbjct: 264 EKWARWN 270


>sp|AATC_ARCFU|A-TYPE ATP synthase subunit C|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ESWATWNYV 9
E W WN +
Sbjct: 102 EKWDVWNII 110




28|SequenceR|145|136|EGDSDESWAT

>sp|FLAK_METMP|PREFLAGELLIN peptidase|Methanococcus maripaludis (strain DSM 14266

Query: 2 GDSDESWAT 10
GD +E W T
Sbjct: 192 GDEEEIWVT 200


>sp|Y2034_SULTO|UNCHARACTERIZED solute-binding protein STK_20340|Sulfurisphaera tokodaii (strain

Query: 1 EGDSDESWA 9
EG+ D WA
Sbjct: 123 EGNRDPGWA 131


>sp|TIAS_PYRNV|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Pyrobaculum neutrophilum

Query: 1 EGDSDESW 8
EGD +E W
Sbjct: 69 EGDVEELW 76


>sp|PURT_METM5|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanococcus

Query: 1 EGDSDESW 8
EGD ++SW
Sbjct: 169 EGDIEKSW 176


Query: 1 EGDSDESW 8
+GD ESW
Sbjct: 225 DGDYHESW 232


>sp|T1R1_METJA|PUTATIVE type I restriction enzyme|Methanocaldococcus jannaschii (strain

Query: 2 GDSDESWA 9
GD E WA
Sbjct: 594 GDEAEKWA 601


>sp|IF2P_PYRHO|PROBABLE translation initiation factor IF-2|Pyrococcus horikoshii (strain

Query: 4 SDESWAT 10
SDE W T
Sbjct: 163 SDEEWET 169


>sp|Y1427_HALMA|UNCHARACTERIZED protein rrnAC1427|Haloarcula marismortui (strain ATCC 43049

Query: 2 GDSDESWAT 10
GD+DE+ AT
Sbjct: 162 GDADEARAT 170


>sp|PURT_METJA|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanocaldococcus

Query: 1 EGDSDESW 8
+GD ESW
Sbjct: 226 DGDYHESW 233


>sp|PURT_METMP|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanococcus

Query: 1 EGDSDESW 8
+GD ESW
Sbjct: 225 DGDYHESW 232


>sp|PURT_METM7|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Methanococcus

Query: 1 EGDSDESW 8
+GD ESW
Sbjct: 225 DGDYHESW 232


>sp|TRCM_PYRAB|TRNA (cytosine(49)-C(5))-methyltransferase|Pyrococcus abyssi (strain

Query: 3 DSDESWA 9
DS+E WA
Sbjct: 23 DSEEFWA 29




29|SequenceR|150|141|QGTGNEGDSD

>sp|TRM1_HALLT|TRNA (guanine(26)-N(2))-dimethyltransferase|Halorubrum lacusprofundi

Query: 4 GNEGDSD 10
GNEGD+D
Sbjct: 371 GNEGDAD 377


>sp|ACDA_METTH|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanothermobacter

Query: 3 TGNEGDS 9
TG EGDS
Sbjct: 184 TGQEGDS 190


>sp|HIS51_METMP|IMIDAZOLE glycerol phosphate synthase subunit|Methanococcus maripaludis

Query: 2 GTGNEGDS 9
G GN GDS
Sbjct: 45 GVGNFGDS 52




30|SequenceR|155|146|VNHHSQGTGN

>sp|ACDB_METKA|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanopyrus kandleri

Query: 1 VNHHSQGT 8
V HSQGT
Sbjct: 258 VKEHSQGT 265


>sp|T1RH_METJA|PUTATIVE type I restriction enzyme|Methanocaldococcus jannaschii (strain

Query: 4 HSQGTG 9
H+QGTG
Sbjct: 336 HAQGTG 341


>sp|GLPA2_HALVD|ANAEROBIC glycerol-3-phosphate dehydrogenase subunit A2|Haloferax volcanii

Query: 2 NHHSQGTG 9
NHHS+G
Sbjct: 189 NHHSEGAA 196


>sp|HUTU_THEVO|PROBABLE urocanate hydratase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 HHSQGTG 9
HH GTG
Sbjct: 486 HHGGGTG 492


>sp|SYI_METAR|ISOLEUCINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 VNHHSQG 7
V HHS G
Sbjct: 267 VEHHSDG 273


>sp|Y1488_METJA|UNCHARACTERIZED protein MJ1488|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VNHHSQGT 8
VNH S GT
Sbjct: 344 VNHASNGT 351




31|SequenceR|160|151|KGDPFVNHHS

>sp|PUR7_THESM|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Thermococcus sibiricus (strain DSM 12597

Query: 2 GDPFVNHH 9
GDP +NH+
Sbjct: 127 GDPMINHY 134


>sp|SURE_METTP|5'-NUCLEOTIDASE SurE|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 KGDPFVNHHS 10
+GD F N+HS
Sbjct: 135 QGDKFDNNHS 144


>sp|RPO2C_METTW|DNA-DIRECTED RNA polymerase subunit Rpo2C|Methanothermobacter thermautotrophicus

Query: 4 PFVNHHS 10
PF NH+S
Sbjct: 140 PFANHNS 146


>sp|RPO2C_METTH|DNA-DIRECTED RNA polymerase subunit Rpo2C|Methanothermobacter thermautotrophicus

Query: 4 PFVNHHS 10
PF NH+S
Sbjct: 140 PFANHNS 146


>sp|KITH_THEKO|THYMIDINE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 KGDPF 5
KGDPF
Sbjct: 126 KGDPF 130


>sp|Y021_METJA|PUTATIVE glycyl-radical enzyme activating enzyme|Methanocaldococcus

Query: 1 KGDPFVNH 8
KGD F+N+
Sbjct: 244 KGDLFINY 251


>sp|UDGA_ARCFU|TYPE-4 uracil-DNA glycosylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KGDPFV 6
KG+PFV
Sbjct: 51 KGEPFV 56


>sp|RPIA_THEAC|RIBOSE-5-PHOSPHATE isomerase A|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 KGDPFV 6
KG+PFV
Sbjct: 165 KGEPFV 170


>sp|COFD_METTH|2-PHOSPHO-L-LACTATE transferase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 KGDPFVNHHS 10
+GD F+ H +
Sbjct: 73 EGDTFITHET 82


>sp|IPK_METTH|ISOPENTENYL phosphate kinase|Methanothermobacter thermautotrophicus (strain

Query: 2 GDPFVNHHS 10
GD +NH S
Sbjct: 157 GDQLINHFS 165


>sp|Y4618_METAC|UPF0313 protein MA_4618|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 GDPFVNHHS 10
GD +V+H S
Sbjct: 149 GDAYVDHSS 157


>sp|SYK_METMJ|LYSINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 4 PFVNHHS 10
PF HH+
Sbjct: 211 PFTTHHN 217


>sp|Y1287_METMA|UPF0313 protein MM_1287|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GDPFVNHHS 10
GD +V+H S
Sbjct: 21 GDAYVDHSS 29




32|SequenceR|165|156|HHPFPKGDPF

>sp|RFCS_THEPD|REPLICATION factor C small subunit|Thermofilum pendens (strain DSM 2475

Query: 2 HPFPKGDPF 10
P PKGD F
Sbjct: 158 QPLPKGDAF 166


>sp|Y686_METJA|UNCHARACTERIZED protein MJ0686|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HHPFPKG 7
HH FPKG
Sbjct: 462 HHIFPKG 468


>sp|RL15E_THEON|LARGE ribosomal subunit protein eL15|Thermococcus onnurineus (strain NA1)

Query: 1 HHPFPKGDP 9
HHP K DP
Sbjct: 136 HHPVIKSDP 144


>sp|RL15E_PYRFU|LARGE ribosomal subunit protein eL15|Pyrococcus furiosus (strain ATCC

Query: 1 HHPFPKGDP 9
HHP K DP
Sbjct: 136 HHPVIKSDP 144


>sp|RL15E_PYRHO|LARGE ribosomal subunit protein eL15|Pyrococcus horikoshii (strain ATCC

Query: 1 HHPFPKGDP 9
HHP K DP
Sbjct: 136 HHPVIKSDP 144


>sp|RL15E_PYRAB|LARGE ribosomal subunit protein eL15|Pyrococcus abyssi (strain GE5 /

Query: 1 HHPFPKGDP 9
HHP K DP
Sbjct: 136 HHPVIKSDP 144


>sp|RL15E_THEGJ|LARGE ribosomal subunit protein eL15|Thermococcus gammatolerans (strain

Query: 1 HHPFPKGDP 9
HHP K DP
Sbjct: 136 HHPVIKSDP 144


>sp|IDI2_AERPE|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Aeropyrum pernix (strain ATCC 700893

Query: 5 PKGDPF 10
P+GDPF
Sbjct: 165 PEGDPF 170


>sp|MOAC_METKA|PROBABLE cyclic pyranopterin monophosphate synthase|Methanopyrus kandleri

Query: 2 HPFPKGDP 9
HP KGDP
Sbjct: 45 HPQGKGDP 52


>sp|TRUB_PYRCJ|PROBABLE tRNA pseudouridine synthase B|Pyrobaculum calidifontis (strain DSM

Query: 2 HPFPKGD 8
HPF +GD
Sbjct: 267 HPFSRGD 273


>sp|RL15E_THEKO|LARGE ribosomal subunit protein eL15|Thermococcus kodakarensis (strain

Query: 1 HHPFPKGDP 9
HHP K DP
Sbjct: 136 HHPVIKSDP 144


>sp|Y2061_THEKO|PUTATIVE phosphate permease TK2061|Thermococcus kodakarensis (strain ATCC

Query: 4 FPKGDPF 10
FP DPF
Sbjct: 232 FPSSDPF 238


>sp|YPV4_METTF|UNCHARACTERIZED protein ORF4|Methanothermobacter thermautotrophicus

Query: 2 HPFPKGDPF 10
HP+P G F
Sbjct: 184 HPYPNGSIF 192


>sp|ABLB_METMP|BETA-LYSINE N(6)-acetyltransferase|Methanococcus maripaludis (strain DSM 14266

Query: 2 HPFPKGDP 9
+PFP DP
Sbjct: 147 YPFPIDDP 154


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 HPFPKGDP 9
+ FPK DP
Sbjct: 218 YDFPKADP 225


>sp|ACDA2_METMA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina mazei

Query: 2 HPFPKGDP 9
+ FPK DP
Sbjct: 219 YDFPKADP 226


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 HPFPKGDP 9
+ FPK DP
Sbjct: 218 YDFPKADP 225


>sp|ACD2_ARCFU|ACETATE--COA ligase [ADP-forming] II|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 HPFPKGD 8
P PKGD
Sbjct: 508 QPLPKGD 514


>sp|AROA_METLZ|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanocorpusculum labreanum (strain

Query: 1 HHPFPKG 7
H P PKG
Sbjct: 77 HAPLPKG 83


>sp|ACDA1_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 4 FPKGDP 9
FPK DP
Sbjct: 221 FPKADP 226


>sp|Y1401_PYRAB|PUTATIVE phosphate permease PYRAB14010|Pyrococcus abyssi (strain GE5 /

Query: 4 FPKGDPF 10
FPK DP+
Sbjct: 231 FPKVDPY 237


>sp|ACDA1_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 HPFPKGDP 9
+ FPK DP
Sbjct: 219 YDFPKADP 226


>sp|ACDA1_METMA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina mazei

Query: 4 FPKGDP 9
FPK DP
Sbjct: 221 FPKADP 226


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 4 FPKGDP 9
FPK DP
Sbjct: 220 FPKSDP 225


>sp|YPZ4_METTF|UNCHARACTERIZED protein ORF4'|Methanothermobacter thermautotrophicus

Query: 2 HPFPKGDPF 10
HP+P G F
Sbjct: 181 HPYPNGSIF 189


>sp|Y2791_METMA|UPF0758 protein MM_2791|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 HPFPKGDP 9
H P GDP
Sbjct: 177 HNHPSGDP 184


>sp|Y2303_METBF|UPF0758 protein Mbar_A2303|Methanosarcina barkeri (strain Fusaro /

Query: 2 HPFPKGDP 9
H P GDP
Sbjct: 177 HNHPSGDP 184


>sp|Y1979_METAC|UPF0758 protein MA_1979|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 HPFPKGDP 9
H P GDP
Sbjct: 177 HNHPSGDP 184


>sp|PSTB1_HALMA|PHOSPHATE import ATP-binding protein PstB|Haloarcula marismortui (strain

Query: 3 PFPKGDPF 10
P P GDP
Sbjct: 25 PDPSGDPL 32


>sp|Y382_METBU|UPF0758 protein Mbur_0382|Methanococcoides burtonii (strain DSM 6242

Query: 2 HPFPKGDP 9
H P GDP
Sbjct: 177 HNHPSGDP 184


>sp|CYNS_SULTO|CYANATE hydratase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 HPFPKGDPF 10
P+P DPF
Sbjct: 78 QPWPPTDPF 86


>sp|Y2221_ARCFU|UNCHARACTERIZED protein AF_2221|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 FPKGD---PF 10
FPKGD PF
Sbjct: 177 FPKGDQCNPF 186


>sp|AOX1_AERPE|HEME-COPPER oxidase subunit I+III|Aeropyrum pernix (strain ATCC 700893

Query: 1 HHPFPK 6
H PFPK
Sbjct: 624 HWPFPK 629


>sp|GGR_METVS|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus vannielii (strain ATCC 35089

Query: 4 FPKGD 8
FPKGD
Sbjct: 210 FPKGD 214


>sp|GGR_METS3|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanobrevibacter smithii (strain ATCC 35061

Query: 4 FPKGD 8
FPKGD
Sbjct: 212 FPKGD 216


>sp|GGR_METMP|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain DSM 14266

Query: 4 FPKGD 8
FPKGD
Sbjct: 210 FPKGD 214


>sp|GGR_METM7|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain C7 /

Query: 4 FPKGD 8
FPKGD
Sbjct: 210 FPKGD 214


>sp|GGR_METM6|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain C6 /

Query: 4 FPKGD 8
FPKGD
Sbjct: 210 FPKGD 214


>sp|GGR_METM5|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain C5 /

Query: 4 FPKGD 8
FPKGD
Sbjct: 210 FPKGD 214


>sp|GGR_METHJ|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 FPKGD 8
FPKGD
Sbjct: 212 FPKGD 216


>sp|GGR_METBF|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanosarcina barkeri (strain Fusaro /

Query: 4 FPKGD 8
FPKGD
Sbjct: 212 FPKGD 216


>sp|GGR_METAR|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanocella arvoryzae (strain DSM 22066

Query: 4 FPKGD 8
FPKGD
Sbjct: 212 FPKGD 216


>sp|GGR2_METST|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 FPKGD 8
FPKGD
Sbjct: 212 FPKGD 216


>sp|TRM5B_PYRAB|TRNA (guanine(37)-N(1))-methyltransferase Trm5b|Pyrococcus abyssi

Query: 5 PKGDPF 10
P+GDP+
Sbjct: 281 PEGDPY 286


>sp|SYY_METHJ|TYROSINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 HHPFPKGD 8
HH FP+ D
Sbjct: 250 HHIFPRLD 257


>sp|RL15E_METMA|LARGE ribosomal subunit protein eL15|Methanosarcina mazei (strain ATCC

Query: 1 HHPFPKGD 8
HHP K D
Sbjct: 138 HHPVIKSD 145


>sp|GGR_SULAC|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 PFPKGD 8
P+PKG+
Sbjct: 62 PYPKGE 67


>sp|TOP6B_PYRHO|TYPE 2 DNA topoisomerase 6|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 HPFPKG 7
HP PKG
Sbjct: 162 HPNPKG 167


>sp|ATGT_KORCO|TRNA-GUANINE(15) transglycosylase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 HHPFPKG 7
H P+PKG
Sbjct: 497 HLPYPKG 503


>sp|RL15E_METAC|LARGE ribosomal subunit protein eL15|Methanosarcina acetivorans (strain

Query: 1 HHPFPKGD 8
HHP K D
Sbjct: 138 HHPVIKSD 145


>sp|SYA_METJA|ALANINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HHPFPKGDPF 10
HH F + D F
Sbjct: 148 HHAFNREDDF 157


>sp|PUR7_METMJ|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 HHPFPKGDPF 10
++PF +G+P
Sbjct: 104 NYPFREGEPL 113


>sp|Y1487_METJA|UNCHARACTERIZED methyltransferase MJ1487|Methanocaldococcus jannaschii (strain ATCC

Query: 3 PFPKGDP 9
P P GDP
Sbjct: 97 PHPTGDP 103


>sp|ARCE_THEKO|ARGININE synthetase ArcE|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 HPFPKGD 8
HP P GD
Sbjct: 160 HPMPYGD 166


>sp|TOP6B_PYRAB|TYPE 2 DNA topoisomerase 6|Pyrococcus abyssi (strain GE5 /

Query: 2 HPFPKG 7
HP PKG
Sbjct: 162 HPNPKG 167


>sp|TOP6B_THEON|TYPE 2 DNA topoisomerase 6|Thermococcus onnurineus (strain NA1)

Query: 2 HPFPKG 7
HP PKG
Sbjct: 162 HPNPKG 167


>sp|RL3_METBF|LARGE ribosomal subunit protein uL3|Methanosarcina barkeri (strain Fusaro

Query: 3 PFPKGD 8
P PKGD
Sbjct: 115 PVPKGD 120


>sp|Y284_METJA|UNCHARACTERIZED protein MJ0284|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 HPFPKGD 8
HP PK D
Sbjct: 17 HPNPKAD 23


>sp|HIS8_METKA|HISTIDINOL-PHOSPHATE aminotransferase|Methanopyrus kandleri (strain AV19 /

Query: 3 PFPKGDP 9
P+P G+P
Sbjct: 96 PYPAGEP 102


>sp|HAH4_HALMT|HALOCIN-H4 mediterranei (strain ATCC 33500

Query: 3 PFPKGDP 9
P P GDP
Sbjct: 51 PGPNGDP 57


>sp|TOP6B_THEKO|TYPE 2 DNA topoisomerase 6|Thermococcus kodakarensis (strain ATCC

Query: 2 HPFPKG 7
HP PKG
Sbjct: 163 HPNPKG 168


>sp|METAA_METAX|HOMOSERINE O-acetyltransferase|Methanomethylophilus alvi (strain Mx1201)

Query: 1 HHPFPKGDP 9
+H FP DP
Sbjct: 261 YHYFPDDDP 269


>sp|RL15E_METJA|LARGE ribosomal subunit protein eL15|Methanocaldococcus jannaschii

Query: 1 HHPFPKGDP 9
+HP K DP
Sbjct: 136 YHPAIKADP 144


>sp|METAA_THEXX|HOMOSERINE O-acetyltransferase|Thermoplasmatales archaeon (strain BRNA1)

Query: 1 HHPFPKGDP 9
+H FP DP
Sbjct: 261 YHYFPDDDP 269




33|SequenceR|170|161|RRWGPHHPFP

>sp|RF1_METMA|PEPTIDE chain release factor subunit|Methanosarcina mazei (strain ATCC

Query: 1 RRWGPHHPFP 10
RRW P P P
Sbjct: 341 RRWKPGEPAP 350


>sp|RF11_METAC|PEPTIDE chain release factor subunit|Methanosarcina acetivorans (strain

Query: 1 RRWGPHHPFP 10
RRW P P P
Sbjct: 341 RRWKPGEPAP 350


>sp|NUOCD_HALVD|NADH-QUINONE oxidoreductase subunit C/D|Haloferax volcanii (strain ATCC 29605

Query: 4 GPHHP 8
GPHHP
Sbjct: 191 GPHHP 195


>sp|TSR3_METTH|16S rRNA aminocarboxypropyltransferase|Methanothermobacter

Query: 2 RWGPH 6
+WGPH
Sbjct: 134 KWGPH 138


>sp|TSR3_METST|16S rRNA aminocarboxypropyltransferase|Methanosphaera stadtmanae

Query: 2 RWGPH 6
+WGPH
Sbjct: 135 KWGPH 139


>sp|TPSP_THETK|BIFUNCTIONAL trehalose-6-phosphate synthase/phosphatase|Thermoproteus tenax

Query: 5 PHHPFP 10
PH+P+P
Sbjct: 510 PHYPYP 515


>sp|YD5A_METJA|UNCHARACTERIZED protein MJ1351.1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 WGPHHPF 9
WG HPF
Sbjct: 182 WGGAHPF 188


>sp|DADD_METS3|5'-DEOXYADENOSINE deaminase|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 WGPHHPF 9
+GPH P+
Sbjct: 182 FGPHSPY 188


>sp|DNAG_THEON|DNA primase DnaG|Thermococcus onnurineus (strain NA1)

Query: 4 GPHHPF 9
GPH PF
Sbjct: 193 GPHVPF 198


>sp|DNAG_THEKO|DNA primase DnaG|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 GPHHPF 9
GPH PF
Sbjct: 191 GPHVPF 196


>sp|DNAG_THEGJ|DNA primase DnaG|Thermococcus gammatolerans (strain DSM 15229

Query: 4 GPHHPF 9
GPH PF
Sbjct: 192 GPHVPF 197


>sp|DNAG_PYRHO|DNA primase DnaG|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 GPHHPF 9
GPH PF
Sbjct: 193 GPHVPF 198


>sp|DNAG_PYRFU|DNA primase DnaG|Pyrococcus furiosus (strain ATCC 43587

Query: 4 GPHHPF 9
GPH PF
Sbjct: 193 GPHVPF 198


>sp|DNAG_PYRAB|DNA primase DnaG|Pyrococcus abyssi (strain GE5 /

Query: 4 GPHHPF 9
GPH PF
Sbjct: 193 GPHVPF 198


>sp|FLPA_HALMA|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Haloarcula marismortui (strain

Query: 1 RRWGPH 6
RRW PH
Sbjct: 35 RRWDPH 40


>sp|Y952_ARCFU|UNCHARACTERIZED protein AF_0952|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 WGPHHPF 9
WG HPF
Sbjct: 198 WGGAHPF 204


>sp|MTAD_THESM|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase|Thermococcus sibiricus (strain DSM 12597

Query: 3 WGPHHPF 9
+GPH P+
Sbjct: 178 FGPHAPY 184


>sp|MTAD_THEON|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase|Thermococcus onnurineus (strain NA1)

Query: 3 WGPHHPF 9
+GPH P+
Sbjct: 178 FGPHAPY 184


>sp|MTAD_THEKO|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 WGPHHPF 9
+GPH P+
Sbjct: 178 FGPHAPY 184


>sp|Y1561_METJA|UNCHARACTERIZED protein MJ1561|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 PHHPF 9
PH+PF
Sbjct: 64 PHYPF 68


>sp|Y1506_METJA|UNCHARACTERIZED protein MJ1506|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 PHHPF 9
PH+PF
Sbjct: 105 PHYPF 109


>sp|DADD_METTH|5'-DEOXYADENOSINE deaminase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 GPHHPF 9
GPH P+
Sbjct: 181 GPHSPY 186


>sp|RADA_CENSY|DNA repair and recombination protein|Cenarchaeum symbiosum (strain A)

Query: 5 PHHP 8
PHHP
Sbjct: 302 PHHP 305


>sp|MTD_METJA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanocaldococcus

Query: 5 PHHP 8
PHHP
Sbjct: 259 PHHP 262


>sp|HACA_METJA|METHANOGEN homoaconitase large subunit|Methanocaldococcus jannaschii (strain

Query: 5 PHHP 8
PHHP
Sbjct: 277 PHHP 280


>sp|LEUC_THEKO|3-ISOPROPYLMALATE dehydratase large subunit|Thermococcus kodakarensis (strain ATCC

Query: 5 PHHP 8
PHHP
Sbjct: 237 PHHP 240


>sp|SYM_KORCO|METHIONINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 2 RWGPHHPFP 10
+WG PFP
Sbjct: 233 KWGIPAPFP 241


>sp|THIC_THEKO|PHOSPHOMETHYLPYRIMIDINE synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 WGPHHPF 9
WG +PF
Sbjct: 198 WGEENPF 204


>sp|THIC_THEGJ|PHOSPHOMETHYLPYRIMIDINE synthase|Thermococcus gammatolerans (strain DSM 15229

Query: 3 WGPHHPF 9
WG +PF
Sbjct: 198 WGEENPF 204


>sp|THIC_PYRFU|PHOSPHOMETHYLPYRIMIDINE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 WGPHHPF 9
WG +PF
Sbjct: 198 WGEENPF 204


>sp|COFG_METPE|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 5 PHHPFP 10
P HP+P
Sbjct: 272 PEHPWP 277


>sp|MTAP_THEKO|S-METHYL-5'-THIOADENOSINE phosphorylase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 RWGPHHPFP 10
R G HH FP
Sbjct: 50 RHGKHHEFP 58


>sp|SYM_PYRNV|METHIONINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 RWGPHHPFP 10
RWG PFP
Sbjct: 235 RWGIPAPFP 243


>sp|SYM_CALMQ|METHIONINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 RWGPHHPFP 10
+WG PFP
Sbjct: 248 KWGIPAPFP 256


>sp|CYAS_METLZ|CYSTEATE synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 5 PHHP 8
PHHP
Sbjct: 24 PHHP 27


>sp|AROC_IGNH4|CHORISMATE synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 WGPH 6
WGPH
Sbjct: 364 WGPH 367


>sp|RL3_METLZ|LARGE ribosomal subunit protein uL3|Methanocorpusculum labreanum (strain

Query: 3 WGPHH 7
W PHH
Sbjct: 237 WTPHH 241


>sp|SYM_PYRAE|METHIONINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 RWGPHHPFP 10
+WG PFP
Sbjct: 235 KWGIPAPFP 243


>sp|COFG_METB6|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanoregula boonei (strain DSM 21154

Query: 5 PHHPFP 10
P HP+P
Sbjct: 272 PEHPWP 277


>sp|RL3_METH6|LARGE ribosomal subunit protein uL3|Methanothrix harundinacea (strain

Query: 3 WGPHH 7
W PHH
Sbjct: 238 WNPHH 242


>sp|ILVD_METTP|DIHYDROXY-ACID dehydratase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 RRWGPHH 7
R GPHH
Sbjct: 298 RPGGPHH 304


>sp|COFG_METMJ|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 5 PHHPFP 10
P HP+P
Sbjct: 272 PEHPWP 277


>sp|SYM_METS5|METHIONINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 3 WGPHHPFP 10
WG PFP
Sbjct: 236 WGIPAPFP 243


>sp|RL4_METTP|LARGE ribosomal subunit protein uL4|Methanothrix thermoacetophila

Query: 1 RRWGPHH 7
R WGP H
Sbjct: 59 RSWGPGH 65


>sp|RL3_METB6|LARGE ribosomal subunit protein uL3|Methanoregula boonei (strain DSM

Query: 3 WGPHH 7
W PHH
Sbjct: 241 WNPHH 245


>sp|Y762_METJA|UNCHARACTERIZED transporter MJ0762|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 6 HHPFP 10
HHP P
Sbjct: 201 HHPLP 205




34|SequenceR|175|166|YIFNWRRWGP

>sp|AMZA_SULAC|ARCHAEMETZINCIN acidocaldarius (strain ATCC 33909

Query: 2 IFNWRRW 8
+FNW RW
Sbjct: 44 LFNWERW 50


>sp|FLPA_HALMA|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Haloarcula marismortui (strain

Query: 4 NWRRWGP 10
+WRRW P
Sbjct: 33 DWRRWDP 39


>sp|ATGT_THEAC|TRNA-GUANINE(15) transglycosylase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 YIFNWRRWGP 10
Y F +R W P
Sbjct: 390 YAFTYRAWNP 399


>sp|THIC_NATPD|PHOSPHOMETHYLPYRIMIDINE synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 YIFNWRR 7
Y F+WRR
Sbjct: 372 YAFDWRR 378


>sp|RL4_ARCFU|LARGE ribosomal subunit protein uL4|Archaeoglobus fulgidus (strain ATCC

Query: 3 FNWRRWGP 10
++W WGP
Sbjct: 56 YSWENWGP 63


>sp|GLYA_PYRCJ|SERINE hydroxymethyltransferase|Pyrobaculum calidifontis (strain DSM

Query: 5 WRRW 8
WRRW
Sbjct: 19 WRRW 22


>sp|FLPA_HALSA|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Halobacterium salinarum (strain

Query: 5 WRRW 8
WRRW
Sbjct: 35 WRRW 38


>sp|FLPA_HALS3|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Halobacterium salinarum (strain

Query: 5 WRRW 8
WRRW
Sbjct: 35 WRRW 38


>sp|TOP6B_METJA|TYPE 2 DNA topoisomerase 6|Methanocaldococcus jannaschii (strain ATCC

Query: 4 NWRRWG 9
NW+R+G
Sbjct: 550 NWKRYG 555


>sp|TF2B_SULTO|TRANSCRIPTION initiation factor IIB|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 IFNWRRW 8
+ WR+W
Sbjct: 99 VLRWRKW 105


>sp|TF2B_SULAC|TRANSCRIPTION initiation factor IIB|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 IFNWRRW 8
+ WR+W
Sbjct: 98 VLRWRKW 104


>sp|FLPA_HALLT|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Halorubrum lacusprofundi (strain

Query: 5 WRRWGP 10
WR W P
Sbjct: 37 WRAWDP 42


>sp|PELO_METVS|PROTEIN pelota homolog|Methanococcus vannielii (strain ATCC 35089

Query: 4 NWRRW 8
NW++W
Sbjct: 113 NWKKW 117


>sp|PELO_METMP|PROTEIN pelota homolog|Methanococcus maripaludis (strain DSM 14266

Query: 4 NWRRW 8
NW++W
Sbjct: 113 NWKKW 117


>sp|PELO_METM7|PROTEIN pelota homolog|Methanococcus maripaludis (strain C7 /

Query: 4 NWRRW 8
NW++W
Sbjct: 113 NWKKW 117


>sp|PELO_METM6|PROTEIN pelota homolog|Methanococcus maripaludis (strain C6 /

Query: 4 NWRRW 8
NW++W
Sbjct: 113 NWKKW 117


>sp|PELO_METM5|PROTEIN pelota homolog|Methanococcus maripaludis (strain C5 /

Query: 4 NWRRW 8
NW++W
Sbjct: 113 NWKKW 117


>sp|PELO_METJA|PROTEIN pelota homolog|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 NWRRW 8
NW++W
Sbjct: 113 NWKKW 117


>sp|PELO_META3|PROTEIN pelota homolog|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 NWRRW 8
NW++W
Sbjct: 113 NWKKW 117


>sp|DP2L_METBF|DNA polymerase II large subunit|Methanosarcina barkeri (strain Fusaro /

Query: 1 YIFNWRRW 8
Y+F W R+
Sbjct: 431 YVFEWWRY 438


>sp|TTRC_ARCFU|TETRATHIONATE reductase subunit C|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 YIFNWRRWG 9
+I+ W+ WG
Sbjct: 184 WIYAWKNWG 192


>sp|SYE_METMJ|GLUTAMATE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 YIFNWRRWGP 10
YIF++ W P
Sbjct: 310 YIFDYFGWKP 319


>sp|RFCL_HALMA|REPLICATION factor C large subunit|Haloarcula marismortui (strain ATCC 43049

Query: 5 WRRWGP 10
W R+GP
Sbjct: 322 WTRYGP 327


>sp|PHR_HALSA|DEOXYRIBODIPYRIMIDINE photo-lyase|Halobacterium salinarum (strain ATCC 700922

Query: 1 YIFNWRRW 8
Y + WR+W
Sbjct: 153 YTYFWRKW 160


>sp|RFCL_HALSA|REPLICATION factor C large subunit|Halobacterium salinarum (strain ATCC 700922

Query: 5 WRRWGP 10
W R+GP
Sbjct: 323 WTRYGP 328


>sp|RFCL_HALS3|REPLICATION factor C large subunit|Halobacterium salinarum (strain ATCC 29341

Query: 5 WRRWGP 10
W R+GP
Sbjct: 323 WTRYGP 328


>sp|SYI_PYRAE|ISOLEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 YIFNWRRWG 9
Y+ WR WG
Sbjct: 129 YLAYWREWG 137


>sp|TDH_PYRAB|L-THREONINE 3-dehydrogenase|Pyrococcus abyssi (strain GE5 /

Query: 1 YIFNWRRWG 9
+I+ W W
Sbjct: 47 HIYEWNEWA 55


>sp|TDH_PYRHO|L-THREONINE 3-dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 YIFNWRRWG 9
+I+ W W
Sbjct: 47 HIYEWNEWA 55


>sp|TDH_PYRFU|L-THREONINE 3-dehydrogenase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 YIFNWRRWG 9
+I+ W W
Sbjct: 47 HIYEWNEWA 55


>sp|TDH_THEKO|L-THREONINE 3-dehydrogenase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 YIFNWRRWG 9
+I+ W W
Sbjct: 47 HIYEWNEWA 55


>sp|PTH_AERPE|PEPTIDYL-TRNA hydrolase|Aeropyrum pernix (strain ATCC 700893

Query: 5 WRRW 8
WRRW
Sbjct: 46 WRRW 49


>sp|TDH_THEON|L-THREONINE 3-dehydrogenase|Thermococcus onnurineus (strain NA1)

Query: 1 YIFNWRRWG 9
+I+ W W
Sbjct: 47 HIYEWNEWA 55


>sp|SYE_PICTO|GLUTAMATE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 1 YIFNWRRW 8
YIFN+ W
Sbjct: 307 YIFNYNNW 314


>sp|Y579_METJA|UNCHARACTERIZED protein MJ0579|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IFNWRRWG 9
I NW WG
Sbjct: 262 IANWIIWG 269


>sp|Y1185_METJA|UNCHARACTERIZED protein MJ1185|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IFNWR 6
IFNWR
Sbjct: 261 IFNWR 265


>sp|DGGGP_METKA|DIGERANYLGERANYLGLYCERYL phosphate synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 YIFNWRRWG 9
Y+++WR G
Sbjct: 114 YLYSWRLKG 122


>sp|RAD25_HALSA|PUTATIVE DNA 3'-5' helicase Rad25|Halobacterium salinarum (strain ATCC

Query: 1 YIFNWRRWG 9
++F+ R WG
Sbjct: 343 HVFDDREWG 351


>sp|XYLS_SACS2|ALPHA-XYLOSIDASE solfataricus (strain ATCC 35092

Query: 2 IFNWRRWG 9
+ +WR WG
Sbjct: 255 VLDWRYWG 262




35|SequenceR|180|171|LTHFVYIFNW

>sp|DADD_METJA|5'-DEOXYADENOSINE deaminase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LTHFVYIFN 9
++H VY FN
Sbjct: 372 MSHLVYAFN 380


>sp|DADD_METVS|5'-DEOXYADENOSINE deaminase|Methanococcus vannielii (strain ATCC 35089

Query: 2 THFVYIFN 9
+H VY FN
Sbjct: 375 SHLVYSFN 382


>sp|DADD_METMP|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain DSM 14266

Query: 2 THFVYIFN 9
+H VY FN
Sbjct: 375 SHLVYSFN 382


>sp|DADD_METM7|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain C7 /

Query: 2 THFVYIFN 9
+H VY FN
Sbjct: 375 SHLVYSFN 382


>sp|DADD_METM6|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain C6 /

Query: 2 THFVYIFN 9
+H VY FN
Sbjct: 375 SHLVYSFN 382


>sp|DADD_METM5|5'-DEOXYADENOSINE deaminase|Methanococcus maripaludis (strain C5 /

Query: 2 THFVYIFN 9
+H VY FN
Sbjct: 375 SHLVYSFN 382


>sp|Y378_METTH|UPF0104 membrane protein MTH_378|Methanothermobacter thermautotrophicus

Query: 1 LTHFVYIFNW 10
+T+ +Y+ NW
Sbjct: 154 ITYLIYLVNW 163


>sp|DADD_META3|5'-DEOXYADENOSINE deaminase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 THFVYIFN 9
+H VY FN
Sbjct: 377 SHLVYSFN 384


>sp|KDGA_SULAC|2-DEHYDRO-3-DEOXY-PHOSPHOGLUCONATE/2-DEHYDRO-3-DEOXY-6-PHOSPHOGALACTONATE aldolase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 THFVYIFNW 10
+H +YI+N+
Sbjct: 123 SHSLYIYNY 131


>sp|PRIL_METJA|DNA primase large subunit PriL|Methanocaldococcus jannaschii (strain

Query: 1 LTHFVYIFNW 10
LTH Y NW
Sbjct: 349 LTHCEYCKNW 358


>sp|PHAC_HALMA|POLY(3-HYDROXYALKANOATE) polymerase subunit PhaC|Haloarcula marismortui (strain ATCC 43049

Query: 3 HFVYIFNW 10
H VY+ +W
Sbjct: 113 HDVYLIDW 120


>sp|PHAC_HALHT|POLY(3-HYDROXYALKANOATE) polymerase subunit PhaC|Haloarcula hispanica (strain ATCC 33960

Query: 3 HFVYIFNW 10
H VY+ +W
Sbjct: 113 HDVYLIDW 120




36|SequenceR|185|176|QFYQGLTHFV

>sp|Y612_METJA|PROBABLE arogenate/prephenate dehydrogenase|Methanocaldococcus jannaschii

Query: 4 QGLTHF 9
QGLTHF
Sbjct: 180 QGLTHF 185


>sp|SPEE1_HYPBU|POLYAMINE aminopropyltransferase 1|Hyperthermus butylicus (strain DSM 5456

Query: 1 QFYQGLTHF 9
+FY GL H+
Sbjct: 268 RFYSGLRHY 276


>sp|SYS_CENSY|SERINE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 1 QFYQGL 6
+FYQGL
Sbjct: 304 EFYQGL 309


>sp|SYY_THEKO|TYROSINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 FYQGLT 7
FYQG+T
Sbjct: 177 FYQGVT 182


>sp|SPEE_PYRAE|POLYAMINE aminopropyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 QFYQGLTH 8
+FY G TH
Sbjct: 269 EFYSGKTH 276


>sp|SYY_THEON|TYROSINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 2 FYQGLT 7
FYQG+T
Sbjct: 177 FYQGVT 182


>sp|SYY_THEGJ|TYROSINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 2 FYQGLT 7
FYQG+T
Sbjct: 177 FYQGVT 182


>sp|SYY_PYRFU|TYROSINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 FYQGLT 7
FYQG+T
Sbjct: 177 FYQGVT 182


>sp|SYY_PYRHO|TYROSINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 FYQGLT 7
FYQG+T
Sbjct: 177 FYQGVT 182


>sp|SYY_PYRAB|TYROSINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 FYQGLT 7
FYQG+T
Sbjct: 177 FYQGVT 182


>sp|SPEE_PYRNV|POLYAMINE aminopropyltransferase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 QFYQGLTHF 9
FY G TH
Sbjct: 269 HFYSGRTHL 277


>sp|SYE_PICTO|GLUTAMATE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 3 YQGLTHFV 10
Y GLTH +
Sbjct: 286 YLGLTHVI 293


>sp|SPEE_SULTO|POLYAMINE aminopropyltransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 QFYQGLTH 8
+FY G TH
Sbjct: 262 RFYDGETH 269




37|SequenceR|190|181|CRGLKQFYQG

>sp|G3P_AERPE|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Aeropyrum pernix (strain ATCC 700893

Query: 3 GLKQFYQG 10
G+KQ YQG
Sbjct: 104 GVKQVYQG 111


>sp|SYM_NANEQ|METHIONINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 3 GLKQFYQ 9
GLKQ+Y+
Sbjct: 716 GLKQYYK 722


>sp|DPOL2_SACS2|DNA polymerase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 RGLKQFYQG 10
RG+K FY+
Sbjct: 588 RGIKGFYEA 596


>sp|GLYA_STAMF|SERINE hydroxymethyltransferase|Staphylothermus marinus (strain ATCC

Query: 4 LKQFYQG 10
K+FYQG
Sbjct: 62 FKRFYQG 68


>sp|GLYA_METS5|SERINE hydroxymethyltransferase|Metallosphaera sedula (strain ATCC 51363

Query: 4 LKQFYQG 10
K+FYQG
Sbjct: 57 FKRFYQG 63


>sp|PGP_THEVO|PHOSPHOGLYCOLATE phosphatase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 RGLKQFYQG 10
RGL FY G
Sbjct: 131 RGLVVFYSG 139


>sp|RL22_ARCFU|LARGE ribosomal subunit protein uL22|Archaeoglobus fulgidus (strain

Query: 2 RGLKQFYQG 10
RGL+++Y G
Sbjct: 75 RGLEKWYAG 83


>sp|DUT_METJA|DEOXYURIDINE 5'-triphosphate nucleotidohydrolase|Methanocaldococcus jannaschii

Query: 1 CRGLKQFYQG 10
CR +K Y+G
Sbjct: 142 CRDVKGVYEG 151




38|SequenceR|195|186|SVRVSCRGLK

>sp|FAU1_HALWD|PROBABLE ribonuclease FAU-1|Haloquadratum walsbyi (strain DSM 16790

Query: 1 SVRVSCRGL 9
SVRVS RG+
Sbjct: 7 SVRVSVRGI 15


>sp|DHYS_METKA|PROBABLE deoxyhypusine synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 SVRVSCRGL 9
S RVSCR L
Sbjct: 137 SGRVSCREL 145




39|SequenceR|200|191|NATNVSVRVS

***** No hits found ******


40|SequenceR|205|196|PGLTVNATNV

>sp|EF2_PYRWO|ELONGATION factor 2|Pyrococcus woesei

Query: 2 GLTVNATNV 10
G+T+NA NV
Sbjct: 69 GITINAANV 77


>sp|EF2_PYRFU|ELONGATION factor 2|Pyrococcus furiosus (strain ATCC 43587

Query: 2 GLTVNATNV 10
G+T+NA NV
Sbjct: 69 GITINAANV 77


>sp|EF2_ARCFU|ELONGATION factor 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GLTVNATNV 10
G+T+NA NV
Sbjct: 68 GITINAANV 76


>sp|EF2_PYRHO|ELONGATION factor 2|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GLTVNATNV 10
G+T+NA NV
Sbjct: 69 GITINAANV 77


>sp|EF2_PYRAB|ELONGATION factor 2|Pyrococcus abyssi (strain GE5 /

Query: 2 GLTVNATNV 10
G+T+NA NV
Sbjct: 69 GITINAANV 77


>sp|EF2_THEGJ|ELONGATION factor 2|Thermococcus gammatolerans (strain DSM 15229

Query: 2 GLTVNATNV 10
G+T+NA NV
Sbjct: 69 GITINAANV 77


>sp|EF2_THESM|ELONGATION factor 2|Thermococcus sibiricus (strain DSM 12597

Query: 2 GLTVNATNV 10
G+T+NA NV
Sbjct: 69 GITINAANV 77


>sp|EF2_THEON|ELONGATION factor 2|Thermococcus onnurineus (strain NA1)

Query: 2 GLTVNATNV 10
G+T+NA NV
Sbjct: 69 GITINAANV 77


>sp|EF2_THEKO|ELONGATION factor 2|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 GLTVNATNV 10
G+T+NA NV
Sbjct: 69 GITINAANV 77


>sp|EF2_METMA|ELONGATION factor 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GLTVNATNV 10
G+T++A+NV
Sbjct: 69 GITIDASNV 77


>sp|EF2_METMJ|ELONGATION factor 2|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 GLTVNATNV 10
G+T++A+NV
Sbjct: 69 GITIDASNV 77


>sp|EF2_METTE|ELONGATION factor 2|Methanosarcina thermophila

Query: 2 GLTVNATNV 10
G+T++A+NV
Sbjct: 69 GITIDASNV 77


>sp|EF2_METPE|ELONGATION factor 2|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 GLTVNATNV 10
G+T++A+NV
Sbjct: 69 GITIDASNV 77


>sp|Y877_METJA|PUTATIVE ABC transporter permease protein|Methanocaldococcus jannaschii

Query: 1 PGLTVNATNV 10
PG+ +++TNV
Sbjct: 87 PGVLISSTNV 96


>sp|EF2_METB6|ELONGATION factor 2|Methanoregula boonei (strain DSM 21154

Query: 2 GLTVNATNV 10
G+T++A+NV
Sbjct: 69 GITIDASNV 77


>sp|EF2_PICTO|ELONGATION factor 2|Picrophilus torridus (strain ATCC 700027

Query: 2 GLTVNATN 9
G+T+NA N
Sbjct: 69 GITINAAN 76




41|SequenceR|210|201|VEMLQPGLTV

>sp|Y2029_AERPE|UPF0284 protein APE_2029.1|Aeropyrum pernix (strain ATCC 700893

Query: 1 VEMLQPGLTV 10
VE + PGLTV
Sbjct: 291 VESIAPGLTV 300


>sp|CAPPA_METBF|PHOSPHOENOLPYRUVATE carboxylase|Methanosarcina barkeri (strain Fusaro /

Query: 1 VEMLQPGL 8
VEM+QP L
Sbjct: 486 VEMMQPDL 493


>sp|HMGCS_METAR|HYDROXYMETHYLGLUTARYL-COA synthase|Methanocella arvoryzae (strain DSM 22066

Query: 2 EMLQPGLT 9
E L PGLT
Sbjct: 253 EQLSPGLT 260


>sp|IF5A_AERPE|TRANSLATION initiation factor 5A|Aeropyrum pernix (strain ATCC 700893

Query: 4 LQPGLTV 10
LQPG+TV
Sbjct: 114 LQPGVTV 120


>sp|MTAD2_ARCFU|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VEMLQPGLT 9
VEML+ G+T
Sbjct: 103 VEMLKSGVT 111


>sp|HPRL_HALBP|HGPRTASE-LIKE protein|Halogeometricum borinquense (strain ATCC 700274

Query: 1 VEMLQPGL 8
V ML+PGL
Sbjct: 30 VPMLEPGL 37


>sp|IF2P_METAR|PROBABLE translation initiation factor IF-2|Methanocella arvoryzae (strain

Query: 3 MLQPGLTV 10
ML+PG+T+
Sbjct: 494 MLKPGVTL 501


>sp|HPRL1_HALVD|HGPRTASE-LIKE protein 1|Haloferax volcanii (strain ATCC 29605

Query: 1 VEMLQPGL 8
V ML+PGL
Sbjct: 30 VPMLEPGL 37




42|SequenceR|215|206|RRYVTVEMLQ

>sp|GFPS_METMA|GERANYLFARNESYL diphosphate synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 YVTVEMLQ 10
Y+TV+ML+
Sbjct: 286 YITVDMLE 293


>sp|Y634_METJA|UNCHARACTERIZED KamA family protein MJ0634|Methanocaldococcus jannaschii (strain

Query: 1 RRYVTVEMLQ 10
RRYVT+ +++
Sbjct: 324 RRYVTIAIIK 333




43|SequenceR|220|211|YARGHRRYVT

>sp|UVRA_METTH|UVRABC system protein A|Methanothermobacter thermautotrophicus (strain

Query: 1 YARGHRRYV 9
YA G RRYV
Sbjct: 53 YAEGQRRYV 61


>sp|KPRS_THEVO|RIBOSE-PHOSPHATE pyrophosphokinase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 YARGHRRY 8
YAR H+RY
Sbjct: 89 YARQHQRY 96


>sp|KPRS_THEAC|RIBOSE-PHOSPHATE pyrophosphokinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 YARGHRRY 8
YAR H+RY
Sbjct: 89 YARQHQRY 96


>sp|AOCD_METTH|ORNITHINE cyclodeaminase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 ARGHRRYV 9
+RGHR ++
Sbjct: 263 SRGHRHHI 270


>sp|TRPB2_SULTO|TRYPTOPHAN synthase beta chain 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 YARGHRRYV 9
YA+ +RRY+
Sbjct: 164 YAKPYRRYL 172


>sp|CAS1A_ARCFU|CRISPR-ASSOCIATED endonuclease Cas1 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 YARGHRRY 8
+ RG RRY
Sbjct: 331 FLRGERRY 338


>sp|HMGCS_PYRAB|HYDROXYMETHYLGLUTARYL-COA synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 YARGHRRYV 9
YA+ R+Y+
Sbjct: 341 YAKARRKYI 349


>sp|HMGCS_PYRHO|HYDROXYMETHYLGLUTARYL-COA synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 YARGHRRYV 9
YA+ R+Y+
Sbjct: 341 YAKARRKYI 349


>sp|RL3_METJA|LARGE ribosomal subunit protein uL3|Methanocaldococcus jannaschii

Query: 1 YARGHRRYVT 10
Y R R Y+T
Sbjct: 88 YGRNERNYLT 97


>sp|DP2L_THEAC|DNA polymerase II large subunit|Thermoplasma acidophilum (strain ATCC

Query: 4 GHRRYVT 10
G+R+Y+T
Sbjct: 12 GYRKYIT 18


>sp|HMGCS_PYRFU|HYDROXYMETHYLGLUTARYL-COA synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 YARGHRRYV 9
YA+ R+Y+
Sbjct: 341 YAKARRKYI 349




44|SequenceR|225|216|QAIPVYARGH

>sp|SYP_CENSY|PROLINE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 2 AIPVYARGH 10
+IP++ARG+
Sbjct: 468 SIPLFARGY 476


>sp|TPIS_PYRIL|TRIOSEPHOSPHATE isomerase|Pyrobaculum islandicum (strain DSM 4184

Query: 3 IPVYARG 9
IPVYA+G
Sbjct: 57 IPVYAQG 63


>sp|TPIS_PYRAR|TRIOSEPHOSPHATE isomerase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 IPVYARG 9
IPVYA+G
Sbjct: 57 IPVYAQG 63


>sp|TPIS_PYRCJ|TRIOSEPHOSPHATE isomerase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 IPVYARG 9
IPVYA+G
Sbjct: 57 IPVYAQG 63


>sp|TPIS_PYRAE|TRIOSEPHOSPHATE isomerase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 IPVYARG 9
IPVYA+G
Sbjct: 57 IPVYAQG 63


>sp|TPIS_THETK|TRIOSEPHOSPHATE isomerase|Thermoproteus tenax (strain ATCC 35583

Query: 3 IPVYARG 9
IPVYA+G
Sbjct: 57 IPVYAQG 63


>sp|YB50_METTW|IRON-SULFUR cluster assembly SufBD family|Methanothermobacter

Query: 2 AIPVYARGH 10
A +Y+RGH
Sbjct: 300 ASQIYSRGH 308


>sp|Y038_PYRAB|UPF0284 protein PYRAB00380|Pyrococcus abyssi (strain GE5 /

Query: 2 AIPVYARGH 10
AIPV GH
Sbjct: 51 AIPVTPEGH 59


>sp|Y1150_METTH|IRON-SULFUR cluster assembly SufBD family|Methanothermobacter

Query: 5 VYARGH 10
+Y+RGH
Sbjct: 303 IYSRGH 308


>sp|G3P_THEON|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Thermococcus onnurineus (strain NA1)

Query: 2 AIPVYARG 9
IPVYA G
Sbjct: 48 GIPVYAAG 55


>sp|Y303_PYRFU|UPF0284 protein PF0303|Pyrococcus furiosus (strain ATCC 43587

Query: 2 AIPVYARGH 10
AIPV GH
Sbjct: 51 AIPVTPEGH 59


>sp|Y853_THEKO|UPF0284 protein TK0853|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 AIPVYARGH 10
AIPV GH
Sbjct: 51 AIPVTPEGH 59


>sp|GAD_SACS2|D-GLUCONATE/D-GALACTONATE dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 IPVYARG 9
+PVYA G
Sbjct: 125 VPVYANG 131


>sp|TPIS_METMJ|TRIOSEPHOSPHATE isomerase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 AIPVYAR 8
AIPVYA+
Sbjct: 56 AIPVYAQ 62


>sp|Y582_METMA|UNCHARACTERIZED glycosyltransferase MM_0582|Methanosarcina mazei (strain ATCC

Query: 1 QAIPVYARGH 10
+ +PVY GH
Sbjct: 115 RKVPVYFIGH 124


>sp|Y453_METAC|UNCHARACTERIZED glycosyltransferase MA_0453|Methanosarcina acetivorans (strain ATCC

Query: 1 QAIPVYARGH 10
+ +PVY GH
Sbjct: 115 RKVPVYFIGH 124


>sp|THIE_CALMQ|THIAMINE-PHOSPHATE synthase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 AIPVYARG 9
+IPVYA G
Sbjct: 154 SIPVYAIG 161




45|SequenceR|230|221|YVDKVQAIPV

>sp|KITH_HALWD|THYMIDINE kinase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 YVDKVQAI 8
YVDK+QAI
Sbjct: 170 YVDKLQAI 177


>sp|YNI2_METTL|UNCHARACTERIZED protein in nifH2 3'region|Methanothermococcus

Query: 3 DKVQAIPV 10
DK+Q IPV
Sbjct: 88 DKLQKIPV 95


>sp|Y763_ARCFU|UNCHARACTERIZED protein AF_0763|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 YVDKVQAIP 9
YVD AIP
Sbjct: 164 YVDNCTAIP 172


>sp|PELO_METAR|PROTEIN pelota homolog|Methanocella arvoryzae (strain DSM 22066

Query: 1 YVDKVQAIPV 10
Y DKVQ I V
Sbjct: 191 YADKVQTIVV 200


>sp|Y089_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 1 YVDKVQAIPV 10
Y++ V+ IPV
Sbjct: 240 YIENVRGIPV 249


>sp|PELO_PYRAB|PROTEIN pelota homolog|Pyrococcus abyssi (strain GE5 /

Query: 3 DKVQAIPV 10
+KV+AIPV
Sbjct: 54 EKVEAIPV 61


>sp|SYA_HALWD|ALANINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 YVDKVQAIPV 10
Y D+ ++IPV
Sbjct: 442 YADRNESIPV 451


>sp|THS3_HALVD|CHAPERONIN subunit CTT3|Haloferax volcanii (strain ATCC 29605

Query: 1 YVDKVQAIP 9
Y D V+A+P
Sbjct: 438 YADAVEALP 446


>sp|PELO_PYRFU|PROTEIN pelota homolog|Pyrococcus furiosus (strain ATCC 43587

Query: 3 DKVQAIPV 10
+KV+A+PV
Sbjct: 54 EKVEAVPV 61


>sp|TNAA_AERPE|PROBABLE tryptophanase|Aeropyrum pernix (strain ATCC 700893

Query: 1 YVDKVQAIP 9
YVD ++A+P
Sbjct: 352 YVDVLEALP 360




46|SequenceR|235|226|QDTVVYVDKV

>sp|SYFB_PYRFU|PHENYLALANINE--TRNA ligase beta subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 2 DTVVYVDK 9
D VVYVDK
Sbjct: 88 DVVVYVDK 95


>sp|SYFB_THEKO|PHENYLALANINE--TRNA ligase beta subunit|Thermococcus kodakarensis (strain ATCC

Query: 2 DTVVYVDK 9
D VVYVD+
Sbjct: 88 DVVVYVDE 95


>sp|SYFB_THEON|PHENYLALANINE--TRNA ligase beta subunit|Thermococcus onnurineus (strain NA1)

Query: 2 DTVVYVDK 9
D VVYVD+
Sbjct: 88 DVVVYVDE 95


>sp|CYNS_SULTO|CYANATE hydratase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 DTVVYVDKV 10
D +YVDKV
Sbjct: 118 DVKIYVDKV 126


>sp|SYFB_PYRAB|PHENYLALANINE--TRNA ligase beta subunit|Pyrococcus abyssi (strain GE5 /

Query: 2 DTVVYVDK 9
D VVYVD+
Sbjct: 88 DVVVYVDE 95


>sp|KDPB_HALSA|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Halobacterium salinarum (strain ATCC

Query: 1 QDTVVYVDK 9
QD VV+VD+
Sbjct: 133 QDAVVFVDE 141


>sp|KDPB_HALS3|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Halobacterium salinarum (strain ATCC

Query: 1 QDTVVYVDK 9
QD VV+VD+
Sbjct: 133 QDAVVFVDE 141


>sp|DP2L_METKA|DNA polymerase II large subunit|Methanopyrus kandleri (strain AV19 /

Query: 1 QDTVVYVDKV 10
++ V Y+DKV
Sbjct: 219 EEVVTYLDKV 228




47|SequenceR|240|231|VFVPIQDTVV

>sp|GLFT_THEAC|GLUTAMATE formimidoyltransferase|Thermoplasma acidophilum (strain ATCC

Query: 2 FVPIQDT 8
FVP+QDT
Sbjct: 92 FVPLQDT 98


>sp|MRE11_NANEQ|DNA double-strand break repair protein|Nanoarchaeum equitans (strain

Query: 1 VFVPIQDT 8
VFVPI+D+
Sbjct: 242 VFVPIEDS 249


>sp|RGYR_PYRHO|REVERSE gyrase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 FVPIQDTV 9
FVP+ DT+
Sbjct: 713 FVPVYDTI 720


>sp|RGYR_PYRFU|REVERSE gyrase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 FVPIQDTV 9
FVP+ DT+
Sbjct: 712 FVPVYDTI 719


>sp|SYH_METTH|HISTIDINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 VFV-PIQDTVV 10
VFV PIQD+ V
Sbjct: 335 VFVIPIQDSTV 345


>sp|RIBL_HALLT|FAD synthase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 VFVPIQ 6
VFVPIQ
Sbjct: 75 VFVPIQ 80


>sp|KAE1_SULAC|TRNA N6-adenosine threonylcarbamoyltransferase|Sulfolobus acidocaldarius

Query: 1 VFVPIQDTVV 10
VF+PI+ +++
Sbjct: 309 VFIPIEKSII 318


>sp|IF2P_THEKO|PROBABLE translation initiation factor IF-2|Thermococcus kodakarensis

Query: 1 VFVPIQD 7
VF+P++D
Sbjct: 531 VFIPVED 537


>sp|DHQS_ARCFU|3-DEHYDROQUINATE synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 VPIQDTVV 10
VPI+D VV
Sbjct: 50 VPIEDAVV 57


>sp|RGYR_THEKO|REVERSE gyrase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 FVPIQDTV 9
F+P+ DT+
Sbjct: 715 FIPVYDTL 722


>sp|RGYR_PYRAB|REVERSE gyrase|Pyrococcus abyssi (strain GE5 /

Query: 2 FVPIQDTV 9
+VP+ DT+
Sbjct: 712 YVPVYDTI 719




48|SequenceR|245|236|KQFMTVFVPI

***** No hits found ******


49|SequenceR|250|241|SNRDNKQFMT

***** No hits found ******


50|SequenceR|255|246|FTEDSSNRDN

***** No hits found ******


51|SequenceR|260|251|PLDKLFTEDS

>sp|SECY_ARCFU|PROTEIN translocase subunit SecY|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PLDKLFT 7
PLD+LFT
Sbjct: 227 PLDQLFT 233


>sp|MDH_PYRCJ|MALATE dehydrogenase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 PLDKLFTED 9
PL KL +ED
Sbjct: 190 PLSKLLSED 198


>sp|MDH_PYRAE|MALATE dehydrogenase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PLDKLFTED 9
PL KL TE+
Sbjct: 190 PLSKLLTEE 198


>sp|Y1214_PYRHO|UNCHARACTERIZED ABC transporter extracellular-binding protein|Pyrococcus horikoshii

Query: 1 PLDKLFTED 9
P+D ++TED
Sbjct: 124 PIDDIWTED 132


>sp|COOS_ARCFU|CARBON monoxide dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 KLFTED 9
KLFTED
Sbjct: 582 KLFTED 587


>sp|MALE_PYRFU|MALTOTRIOSE-BINDING protein|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PLDKLFTED 9
P+D+ TED
Sbjct: 134 PIDEYVTED 142


>sp|Y2246_METAC|UNCHARACTERIZED serpin-like protein MA_2246|Methanosarcina acetivorans (strain ATCC

Query: 1 PLDKLFTEDS 10
PL+KL E+S
Sbjct: 109 PLNKLVLEES 118




52|SequenceR|265|256|VDFMIPLDKL

>sp|CHEB_METBF|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Methanosarcina barkeri

Query: 2 DFMIPLDKL 10
DF++PLDK+
Sbjct: 347 DFVLPLDKM 355


>sp|CHEB_THEKO|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Thermococcus

Query: 1 VDFMIPLDKL 10
VD+++PLDK+
Sbjct: 333 VDYIVPLDKI 342


>sp|CHEB2_METMA|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase 2|Methanosarcina mazei

Query: 2 DFMIPLDKL 10
DF++PLDK+
Sbjct: 350 DFVLPLDKM 358


>sp|CHEB_PYRHO|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Pyrococcus horikoshii

Query: 1 VDFMIPLDKL 10
VD+++PL+K+
Sbjct: 334 VDYVVPLEKI 343


>sp|CHEB_PYRAB|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Pyrococcus abyssi

Query: 1 VDFMIPLDKL 10
VD+++PL+K+
Sbjct: 334 VDYVVPLEKI 343


>sp|TBP_METKA|TATA-BOX-BINDING protein|Methanopyrus kandleri (strain AV19 /

Query: 1 VDFMIPLD 8
+DF +PLD
Sbjct: 101 IDFHVPLD 108


>sp|MDH_THETK|MALATE dehydrogenase|Thermoproteus tenax (strain ATCC 35583

Query: 3 FMIPLDKL 10
F +PLDKL
Sbjct: 187 FGVPLDKL 194


>sp|CBIA_METVS|COBYRINATE a,c-diamide synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 VDFMIPLD 8
VDF IP+D
Sbjct: 228 VDFEIPVD 235


>sp|CHEB2_METAC|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase 2|Methanosarcina

Query: 2 DFMIPLDKL 10
D ++PLDK+
Sbjct: 339 DLVLPLDKM 347


>sp|Y866_ARCFU|UNCHARACTERIZED sugar kinase AF_0866|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 DFMIPLDKL 10
DF +P DK+
Sbjct: 458 DFCMPFDKV 466


>sp|NADK_HALMA|NAD kinase|Haloarcula marismortui (strain ATCC 43049

Query: 1 VDFMIPLDKL 10
+DF LDKL
Sbjct: 273 LDFFTALDKL 282


>sp|RS2_PYRCJ|SMALL ribosomal subunit protein uS2|Pyrobaculum calidifontis (strain DSM

Query: 1 VDFMIPLD 8
+DFMIP +
Sbjct: 156 IDFMIPCN 163


>sp|RS2_PYRAE|SMALL ribosomal subunit protein uS2|Pyrobaculum aerophilum (strain ATCC

Query: 1 VDFMIPLD 8
+DFMIP +
Sbjct: 156 IDFMIPCN 163


>sp|RS2_PYRAR|SMALL ribosomal subunit protein uS2|Pyrobaculum arsenaticum (strain DSM

Query: 1 VDFMIPLD 8
+DFMIP +
Sbjct: 156 IDFMIPCN 163


>sp|MPTA_METLZ|GTP cyclohydrolase MptA|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 DFMIPLDKL 10
D ++PL+K+
Sbjct: 212 DIIVPLEKI 220


>sp|PAN_METMJ|PROTEASOME-ACTIVATING nucleotidase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 DFMIPLDKL 10
DFM +DKL
Sbjct: 386 DFMKAIDKL 394


>sp|KAE1B_METVS|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 VDFMIPLDKL 10
V +IPLDK+
Sbjct: 65 VSGVIPLDKI 74


>sp|RS2_PYRIL|SMALL ribosomal subunit protein uS2|Pyrobaculum islandicum (strain DSM

Query: 1 VDFMIP 6
+DFMIP
Sbjct: 156 IDFMIP 161


>sp|AATC_PYRFU|A-TYPE ATP synthase subunit C|Pyrococcus furiosus (strain ATCC 43587

Query: 2 DFMIPLDKL 10
DF+IP+ K+
Sbjct: 145 DFVIPVGKI 153


>sp|FLAB2_AERPE|PROBABLE flagellin 2|Aeropyrum pernix (strain ATCC 700893

Query: 1 VDFMIPLDKL 10
VD++ P DK+
Sbjct: 191 VDYLEPYDKI 200


>sp|RS2_METST|SMALL ribosomal subunit protein uS2|Methanosphaera stadtmanae (strain

Query: 2 DFMIPLDK 9
+ +IPLDK
Sbjct: 3 ELLIPLDK 10




53|SequenceR|270|261|PDHILVDFMI

>sp|YPZ4_METTF|UNCHARACTERIZED protein ORF4'|Methanothermobacter thermautotrophicus

Query: 3 HILVDFM 9
HIL+DFM
Sbjct: 84 HILLDFM 90


>sp|YPV4_METTF|UNCHARACTERIZED protein ORF4|Methanothermobacter thermautotrophicus

Query: 3 HILVDFM 9
HIL+DFM
Sbjct: 84 HILLDFM 90


>sp|Y1195_METTH|UNCHARACTERIZED protein MTH_1195|Methanothermobacter thermautotrophicus (strain

Query: 2 DHILVDF 8
DHIL DF
Sbjct: 82 DHILADF 88


>sp|EF2_SULAC|ELONGATION factor 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PDHILVDFMI 10
PD ILVD ++
Sbjct: 708 PDSILVDLIM 717


>sp|GFPS_AERPX|GERANYLFARNESYL diphosphate synthase|Aeropyrum pernix

Query: 2 DHILVDFM 9
DH ++DFM
Sbjct: 4 DHYIMDFM 11


>sp|FPRA_METAZ|COENZYME F420H(2) oxidase|Methanobrevibacter arboriphilus

Query: 1 PDHILVD 7
P+H+L+D
Sbjct: 191 PEHVLMD 197


>sp|AGLF_HALVD|UTP--GLUCOSE-1-PHOSPHATE uridylyltransferase AglF|Haloferax volcanii (strain ATCC 29605

Query: 2 DHILVDFMI 10
DHI DFM+
Sbjct: 93 DHIDEDFML 101


>sp|KAD_METAR|ADENYLATE kinase|Methanocella arvoryzae (strain DSM 22066

Query: 1 PDHILVDFM 9
PD++L+D +
Sbjct: 60 PDNLLIDLI 68


>sp|SYS_HALWD|SERINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 DHILVDFMI 10
+H LV FM+
Sbjct: 178 EHALVQFML 186


>sp|SYS_HALSA|SERINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 DHILVDFMI 10
+H LV FM+
Sbjct: 177 EHALVQFML 185


>sp|SYS_HALS3|SERINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 2 DHILVDFMI 10
+H LV FM+
Sbjct: 177 EHALVQFML 185


>sp|APGM_METTP|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanothrix thermoacetophila (strain DSM

Query: 3 HILVDFM 9
HIL+D M
Sbjct: 177 HILIDIM 183


>sp|PYRC_SACS2|DIHYDROOROTASE solfataricus (strain ATCC 35092

Query: 1 PDHILVD 7
P H+LVD
Sbjct: 218 PHHLLVD 224


>sp|METK_AERPE|S-ADENOSYLMETHIONINE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 2 DHILVDFMI 10
+H++VD+ +
Sbjct: 131 EHVIVDYRV 139




54|SequenceR|275|266|NLFHSPDHIL

>sp|RIBB_METTH|3,4-DIHYDROXY-2-BUTANONE 4-phosphate synthase|Methanothermobacter thermautotrophicus (strain

Query: 1 NLFHSPDHI 9
+LF SP H+
Sbjct: 143 DLFRSPGHV 151


>sp|RFCL_THEVO|REPLICATION factor C large subunit|Thermoplasma volcanium (strain ATCC 51530

Query: 3 FHSPDHI 9
FHSP +I
Sbjct: 346 FHSPSYI 352


>sp|PELO_IGNH4|PROTEIN pelota homolog|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 NLFHSPD 7
+L HSPD
Sbjct: 292 DLLHSPD 298


>sp|CPGS_THEKO|CYCLIC 2,3-diphosphoglycerate synthetase|Thermococcus kodakarensis

Query: 2 LFHSPDHI 9
L+HSP+++
Sbjct: 51 LYHSPNYL 58


>sp|T2RM_METJA|PUTATIVE type II restriction enzyme|Methanocaldococcus jannaschii (strain

Query: 1 NLFHSPDHIL 10
NLF SP+ I
Sbjct: 988 NLFMSPEKIF 997


>sp|COPP_THEAC|BIFUNCTIONAL phosphopantetheine adenylyltransferase/NTP phosphatase|Thermoplasma

Query: 3 FHSPDHIL 10
F PDHI+
Sbjct: 254 FEIPDHIV 261


>sp|Y908_METJA|UNCHARACTERIZED protein MJ0908|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LFHSPD 7
++HSPD
Sbjct: 516 IYHSPD 521


>sp|NDK_HALSA|NUCLEOSIDE diphosphate kinase|Halobacterium salinarum (strain ATCC 700922

Query: 1 NLFHSPDH 8
NL H DH
Sbjct: 116 NLIHGSDH 123


>sp|NDK_HALS3|NUCLEOSIDE diphosphate kinase|Halobacterium salinarum (strain ATCC 29341

Query: 1 NLFHSPDH 8
NL H DH
Sbjct: 116 NLIHGSDH 123




55|SequenceR|280|271|NITSYNLFHS

>sp|GUAAB_SULTO|GMP synthase [glutamine-hydrolyzing] subunit B|Sulfurisphaera tokodaii

Query: 2 ITSYNLFH 9
+TSYN+ H
Sbjct: 294 LTSYNITH 301


>sp|DPCKG_HYPBU|GTP-DEPENDENT dephospho-CoA kinase|Hyperthermus butylicus (strain DSM 5456

Query: 5 YNLFHS 10
Y+LFHS
Sbjct: 2 YHLFHS 7


>sp|ARGD_METJA|ACETYLORNITHINE aminotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 ITSYNLFH 9
I+ YN FH
Sbjct: 132 ISMYNAFH 139


>sp|GCSPA_SULAC|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Sulfolobus

Query: 4 SYNLFHS 10
+YNL HS
Sbjct: 399 NYNLIHS 405




56|SequenceR|285|276|FSWKYNITSY

>sp|PYRG_THEVO|CTP synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 FSWKYNITS 9
SWK NIT+
Sbjct: 82 LSWKNNITT 90


>sp|DHE3_PYRHR|GLUTAMATE dehydrogenase|Pyrococcus horikoshii

Query: 1 FSWKYNITSY 10
F W NIT Y
Sbjct: 354 FEWVQNITGY 363


>sp|DHE3_PYRHO|GLUTAMATE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 FSWKYNITSY 10
F W NIT Y
Sbjct: 354 FEWVQNITGY 363


>sp|DHE3_PYRFU|GLUTAMATE dehydrogenase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 FSWKYNITSY 10
F W NIT Y
Sbjct: 354 FEWVQNITGY 363


>sp|DHE3_PYREN|GLUTAMATE dehydrogenase|Pyrococcus endeavori

Query: 1 FSWKYNITSY 10
F W NIT Y
Sbjct: 354 FEWVQNITGY 363


>sp|DHE3_PYRAB|GLUTAMATE dehydrogenase|Pyrococcus abyssi (strain GE5 /

Query: 1 FSWKYNITSY 10
F W NIT Y
Sbjct: 354 FEWVQNITGY 363


>sp|PSB2_KORCO|PROTEASOME subunit beta 2|Korarchaeum cryptofilum (strain OPF8)

Query: 4 KYNITSY 10
KYNIT Y
Sbjct: 63 KYNITMY 69


>sp|RLME_METHJ|RIBOSOMAL RNA large subunit methyltransferase|Methanospirillum hungatei JF-1

Query: 1 FSWKYN 6
FSW YN
Sbjct: 155 FSWLYN 160


>sp|RPO6_SULTO|DNA-DIRECTED RNA polymerase subunit Rpo6|Sulfurisphaera tokodaii (strain DSM

Query: 2 SWKYNITSY 10
SWK +T Y
Sbjct: 10 SWKNRLTKY 18


>sp|RS13_NANEQ|SMALL ribosomal subunit protein uS13|Nanoarchaeum equitans (strain

Query: 3 WKYNITSY 10
WKY I S+
Sbjct: 76 WKYGIPSW 83


>sp|GGR_THEGJ|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Thermococcus gammatolerans (strain DSM 15229

Query: 2 SWKYNI 7
SWKY++
Sbjct: 2 SWKYDV 7


>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1 (strain

Query: 4 KYNITSY 10
+YNIT Y
Sbjct: 1250 EYNITEY 1256


>sp|COFD_METLZ|2-PHOSPHO-L-LACTATE transferase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 SWKYNITSY 10
+W Y TSY
Sbjct: 242 AWGYESTSY 250




57|SequenceR|290|281|GTNDGFSWKY

>sp|HIS6_METST|IMIDAZOLE glycerol phosphate synthase subunit|Methanosphaera stadtmanae

Query: 2 TNDGFSW 8
TNDG+ W
Sbjct: 154 TNDGYCW 160


>sp|Y091_METJA|UNCHARACTERIZED membrane protein MJ0091|Methanocaldococcus jannaschii (strain ATCC

Query: 4 DGFSW 8
DGFSW
Sbjct: 121 DGFSW 125


>sp|G1PDH_THEPD|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Thermofilum pendens (strain DSM 2475

Query: 3 NDGFSWK 9
N+G +WK
Sbjct: 330 NEGLAWK 336


>sp|MT872_AERPE|DNA (cytosine-5-)-methyltransferase M.ApeKI|Aeropyrum pernix (strain

Query: 1 GTNDGFSWK 9
GT F WK
Sbjct: 277 GTERAFEWK 285


>sp|Y2328_HALVD|UNCHARACTERIZED isochorismatase family protein HVO_2328|Haloferax volcanii

Query: 4 DGFSWK 9
+GF+WK
Sbjct: 71 EGFAWK 76


>sp|RAD50_THEKO|DNA double-strand break repair Rad50|Thermococcus kodakarensis (strain

Query: 3 NDGFSWK 9
+DG SWK
Sbjct: 98 HDGSSWK 104


>sp|CAPPA_PYRIL|PHOSPHOENOLPYRUVATE carboxylase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 GTNDGFSW 8
GT D SW
Sbjct: 325 GTRDRISW 332




58|SequenceR|295|286|TSVFLGTNDG

>sp|TRUA_METAR|TRNA pseudouridine synthase A|Methanocella arvoryzae (strain DSM 22066

Query: 1 TSVFLGTND 9
+S FLGT+D
Sbjct: 127 SSRFLGTHD 135


>sp|Y1942_ARCFU|UNCHARACTERIZED protein AF_1942|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 VFLGTNDG 10
V+L TNDG
Sbjct: 61 VYLHTNDG 68


>sp|PURQ_PYRAB|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Pyrococcus abyssi (strain GE5 /

Query: 1 TSVFLGTNDG 10
+ FLG+ DG
Sbjct: 201 SDAFLGSEDG 210


>sp|AATA_STAMF|A-TYPE ATP synthase subunit A|Staphylothermus marinus (strain ATCC 43588

Query: 1 TSVFLGTNDG 10
TS+FLG G
Sbjct: 304 TSIFLGATIG 313


>sp|TRUD_THEKO|PROBABLE tRNA pseudouridine synthase D|Thermococcus kodakarensis (strain

Query: 3 VFLGTNDG 10
+FLG +DG
Sbjct: 193 LFLGAHDG 200


>sp|ENO_SACI1|ENOLASE islandicus (strain Y.N.15.51 /

Query: 3 VFLGTNDG 10
VF+ TNDG
Sbjct: 26 VFVRTNDG 33


>sp|ENO_SACI6|ENOLASE islandicus (strain M.16.4 /

Query: 3 VFLGTNDG 10
VF+ TNDG
Sbjct: 26 VFVRTNDG 33


>sp|ENO_SACI4|ENOLASE islandicus (strain M.14.25 /

Query: 3 VFLGTNDG 10
VF+ TNDG
Sbjct: 26 VFVRTNDG 33


>sp|ENO_SACI3|ENOLASE islandicus (strain M.16.27) (Sulfolobus

Query: 3 VFLGTNDG 10
VF+ TNDG
Sbjct: 26 VFVRTNDG 33


>sp|ENO_SACI2|ENOLASE islandicus (strain L.S.2.15 /

Query: 3 VFLGTNDG 10
VF+ TNDG
Sbjct: 26 VFVRTNDG 33


>sp|ENO_SACI7|ENOLASE islandicus (strain Y.G.57.14 /

Query: 3 VFLGTNDG 10
VF+ TNDG
Sbjct: 26 VFVRTNDG 33


>sp|AROE_PYRAB|SHIKIMATE dehydrogenase (NADP(+))|Pyrococcus abyssi (strain GE5 /

Query: 1 TSVFLGTND 9
TSV +GTN+
Sbjct: 180 TSVGMGTNE 188


>sp|RPIA_HALSA|RIBOSE-5-PHOSPHATE isomerase A|Halobacterium salinarum (strain ATCC 700922

Query: 2 SVFLGTNDG 10
+V++GT+DG
Sbjct: 211 AVYVGTDDG 219


>sp|RPIA_HALS3|RIBOSE-5-PHOSPHATE isomerase A|Halobacterium salinarum (strain ATCC 29341

Query: 2 SVFLGTNDG 10
+V++GT+DG
Sbjct: 211 AVYVGTDDG 219




59|SequenceR|300|291|NVTHNTSVFL

>sp|RL18_METBU|LARGE ribosomal subunit protein uL18|Methanococcoides burtonii (strain

Query: 1 NVTHNTSVF 9
+V HN+SVF
Sbjct: 129 DVPHNSSVF 137


>sp|EF2_NATPD|ELONGATION factor 2|Natronomonas pharaonis (strain ATCC 35678

Query: 4 HNTSVFL 10
HNT+VF+
Sbjct: 539 HNTNVFI 545


>sp|SODM2_HALVD|SUPEROXIDE dismutase [Mn] 2|Haloferax volcanii (strain ATCC 29605

Query: 1 NVTHNTS 7
NVTHN S
Sbjct: 64 NVTHNGS 70


>sp|SODM1_HALVD|SUPEROXIDE dismutase [Mn] 1|Haloferax volcanii (strain ATCC 29605

Query: 1 NVTHNTS 7
NVTHN S
Sbjct: 65 NVTHNGS 71


>sp|PAN2_METTM|PROTEASOME-ACTIVATING nucleotidase 2|Methanothermobacter marburgensis (strain ATCC

Query: 2 VTHNTSVFL 10
+T NTS+ L
Sbjct: 101 ITRNTSIIL 109


>sp|PAN2_METTH|PROTEASOME-ACTIVATING nucleotidase 2|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 VTHNTSVFL 10
+T NTS+ L
Sbjct: 101 ITRNTSIIL 109




60|SequenceR|305|296|LVYTHNVTHN

>sp|AATB2_METHJ|A-TYPE ATP synthase subunit B|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 LVYTHNV 7
L YTHN+
Sbjct: 241 LAYTHNL 247


>sp|SCAF_METJA|DUF35 domain-containing scaffold protein|Methanocaldococcus jannaschii

Query: 2 VYTHNVTH 9
VYT++V H
Sbjct: 64 VYTYSVVH 71


>sp|Y1318_METJA|UNCHARACTERIZED protein MJ1318|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LVYTHNVTHN 10
+VY+ NVT N
Sbjct: 336 IVYSKNVTTN 345


>sp|MTIP_METJA|PROBABLE S-methyl-5'-thioinosine phosphorylase|Methanocaldococcus

Query: 1 LVYTHNVTHN 10
L++ H V HN
Sbjct: 41 LLFRHGVRHN 50


>sp|RL30E_METVS|LARGE ribosomal subunit protein eL30|Methanococcus vannielii (strain

Query: 2 VYTHNVT 8
VYTH VT
Sbjct: 66 VYTHQVT 72




61|SequenceR|310|301|SFTGNLVYTH

>sp|DHYS_PYRCJ|PROBABLE deoxyhypusine synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 SFTGNLVYT 9
SFTGNLV T
Sbjct: 39 SFTGNLVAT 47


>sp|DHYS_PYRAE|PROBABLE deoxyhypusine synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 SFTGNLVYT 9
SFTGNLV T
Sbjct: 39 SFTGNLVAT 47


>sp|DHYS_AERPE|PROBABLE deoxyhypusine synthase|Aeropyrum pernix (strain ATCC 700893

Query: 1 SFTGNLVYT 9
+FTGNLV T
Sbjct: 53 TFTGNLVAT 61


>sp|IF2P_THEON|PROBABLE translation initiation factor IF-2|Thermococcus onnurineus (strain

Query: 2 FTGNLVY 8
FTGN++Y
Sbjct: 433 FTGNIIY 439


>sp|DHYS_SULAC|PROBABLE deoxyhypusine synthase|Sulfolobus acidocaldarius (strain ATCC

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 60 SFTANLVST 68


>sp|DHYS_SACI7|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain Y.G.57.14

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 61 SFTANLVST 69


>sp|DHYS_SACI6|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 61 SFTANLVST 69


>sp|DHYS_SACI4|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 61 SFTANLVST 69


>sp|DHYS_SACI3|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain M.16.27)

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 61 SFTANLVST 69


>sp|DHYS_SACI2|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain L.S.2.15

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 61 SFTANLVST 69


>sp|DHYS_SACI1|PROBABLE deoxyhypusine synthase|Saccharolobus islandicus (strain Y.N.15.51

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 61 SFTANLVST 69


>sp|DHYS_IGNH4|PROBABLE deoxyhypusine synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 60 SFTANLVAT 68


>sp|DHYS_SULTO|PROBABLE deoxyhypusine synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 60 SFTANLVST 68


>sp|DHYS_METS5|PROBABLE deoxyhypusine synthase|Metallosphaera sedula (strain ATCC 51363

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 59 SFTANLVST 67


>sp|SYA_SULTO|ALANINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 GNLVYT 9
GNLVYT
Sbjct: 261 GNLVYT 266


>sp|SYY_METMA|TYROSINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 FTGNLVY 8
F GNLVY
Sbjct: 271 FGGNLVY 277


>sp|GATD_ARCFU|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Archaeoglobus fulgidus (strain ATCC

Query: 1 SFTGNLV 7
SFTGN V
Sbjct: 36 SFTGNFV 42


>sp|AOCD_METKA|ORNITHINE cyclodeaminase|Methanopyrus kandleri (strain AV19 /

Query: 2 FTGNLVYTH 10
F GN V TH
Sbjct: 234 FAGNAVATH 242


>sp|GLMS_METJA|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Methanocaldococcus jannaschii

Query: 1 SFTGNLVYTH 10
+F GNL+ H
Sbjct: 560 NFIGNLIINH 569


>sp|DP2L_HALWD|DNA polymerase II large subunit|Haloquadratum walsbyi (strain DSM 16790

Query: 2 FTGNLVYTH 10
FT N +Y H
Sbjct: 2059 FTANWLYAH 2067


>sp|DHYS_SACS2|PROBABLE deoxyhypusine synthase|Saccharolobus solfataricus (strain ATCC

Query: 1 SFTGNLVYT 9
SFT NLV T
Sbjct: 61 SFTANLVST 69


>sp|KAE1_ARCFU|TRNA N6-adenosine threonylcarbamoyltransferase|Archaeoglobus fulgidus

Query: 1 SFTGNLVYTH 10
++TG L+Y H
Sbjct: 289 AYTGLLMYKH 298


>sp|LHRC2_THEBM|ATP-DEPENDENT helicase Lhr-Core protein 2|Thermococcus barophilus (strain DSM

Query: 1 SFTGNLVYT 9
S G+LVYT
Sbjct: 255 SVVGDLVYT 263


>sp|IF2P_METHJ|PROBABLE translation initiation factor IF-2|Methanospirillum hungatei JF-1

Query: 2 FTGNLVY 8
F+GN++Y
Sbjct: 443 FSGNVIY 449


>sp|PUR1_METTH|AMIDOPHOSPHORIBOSYLTRANSFERASE thermautotrophicus (strain ATCC 29096

Query: 1 SFTGNLVYTH 10
+F GN + TH
Sbjct: 48 TFNGNDILTH 57


>sp|Y1524_METJA|UPF0166 protein MJ1524|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 FTGNLVYTH 10
F G L+Y H
Sbjct: 17 FEGELMYKH 25


>sp|SYR_PYRIL|ARGININE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 FTGNLVYTH 10
F GN+V +H
Sbjct: 146 FCGNVVQSH 154


>sp|SYY_METBF|TYROSINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 FTGNLVYT 9
F GN+ YT
Sbjct: 271 FGGNITYT 278


>sp|IF2P_THEKO|PROBABLE translation initiation factor IF-2|Thermococcus kodakarensis

Query: 2 FTGNLVY 8
F GN++Y
Sbjct: 980 FVGNIIY 986


>sp|IF2P_PYRHO|PROBABLE translation initiation factor IF-2|Pyrococcus horikoshii (strain

Query: 2 FTGNLVY 8
F GN++Y
Sbjct: 880 FVGNIIY 886


>sp|IF2P_PYRFU|PROBABLE translation initiation factor IF-2|Pyrococcus furiosus (strain ATCC

Query: 2 FTGNLVY 8
F GN++Y
Sbjct: 820 FVGNIIY 826


>sp|SYR_PYRAE|ARGININE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 FTGNLVYTH 10
F GN V TH
Sbjct: 146 FCGNKVETH 154


>sp|MEND_HALWD|2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE synthase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 SFTGNLVYTH 10
+ TG+L Y H
Sbjct: 493 AITGDLAYYH 502


>sp|Y280_STAMF|UNCHARACTERIZED solute-binding protein Smar_0280|Staphylothermus marinus (strain

Query: 1 SFTGNLVYTH 10
S TG YTH
Sbjct: 23 SLTGYYYYTH 32




62|SequenceR|315|306|VTLNLSFTGN

>sp|Y1623_METJA|UNCHARACTERIZED protein MJ1623|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 NLSFTG 9
NLSFTG
Sbjct: 396 NLSFTG 401


>sp|DHYS_PYRAE|PROBABLE deoxyhypusine synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 5 LSFTGN 10
LSFTGN
Sbjct: 38 LSFTGN 43


>sp|EF1A_SULAC|ELONGATION factor 1-alpha|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 VTLNLSF 7
VT+NLSF
Sbjct: 70 VTINLSF 76


>sp|Y3524_METJA|UNCHARACTERIZED protein MJECL24|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VTLNLSFT 8
+ LNLSFT
Sbjct: 18 IALNLSFT 25


>sp|Y551_METJA|UNCHARACTERIZED protein MJ0551|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VTLNLSFTGN 10
V LNL TGN
Sbjct: 80 VGLNLGSTGN 89


>sp|HYD1B_PYRFU|SULFHYDROGENASE 1 subunit beta|Pyrococcus furiosus (strain ATCC 43587

Query: 4 NLSFTGN 10
N+SF GN
Sbjct: 325 NISFVGN 331


>sp|CCA_METTH|CCA-ADDING enzyme|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 VTLNLSFTGN 10
VT +L+F GN
Sbjct: 250 VTASLNFLGN 259




63|SequenceR|320|311|PAAAKVTLNL

>sp|RL5_THEKO|LARGE ribosomal subunit protein uL5|Thermococcus kodakarensis (strain

Query: 1 PAAAKVTLNL 10
P AKVT+N+
Sbjct: 20 PRIAKVTINI 29


>sp|IF2G_HALSA|TRANSLATION initiation factor 2 subunit|Halobacterium salinarum (strain ATCC

Query: 1 PAAAKVTLN 9
PA AK+ +N
Sbjct: 387 PAGAKIAIN 395


>sp|IF2G_HALS3|TRANSLATION initiation factor 2 subunit|Halobacterium salinarum (strain ATCC

Query: 1 PAAAKVTLN 9
PA AK+ +N
Sbjct: 387 PAGAKIAIN 395




64|SequenceR|325|316|PPCPGPAAAK

>sp|NADE_HYPBU|NH(3)-DEPENDENT NAD(+) synthetase|Hyperthermus butylicus (strain DSM 5456

Query: 1 PPCPGPAA 8
PP P PAA
Sbjct: 259 PPAPDPAA 266


>sp|COFD_METB6|2-PHOSPHO-L-LACTATE transferase|Methanoregula boonei (strain DSM 21154

Query: 2 PCPGPAAA 9
P GPAAA
Sbjct: 228 PVSGPAAA 235


>sp|COFD_METLZ|2-PHOSPHO-L-LACTATE transferase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 PCPGPAAA 9
P GPAAA
Sbjct: 231 PVSGPAAA 238


>sp|BGAL_HALL2|BETA-GALACTOSIDASE BgaH|Haloferax lucentense (strain DSM 14919

Query: 1 PPCPGPAA 8
PP P PAA
Sbjct: 195 PPKPTPAA 202


>sp|MUTS2_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 4 PGPAAA 9
PGPAAA
Sbjct: 809 PGPAAA 814


>sp|APE1_AERPE|HOMING endonuclease I-ApeI|Aeropyrum pernix (strain ATCC 700893

Query: 2 PCPGPAAAK 10
P PGP+ K
Sbjct: 200 PLPGPSKLK 208


>sp|DNAK_CENSY|CHAPERONE protein DnaK|Cenarchaeum symbiosum (strain A)

Query: 2 PCPGPAA 8
P PGPAA
Sbjct: 650 PKPGPAA 656




65|SequenceR|330|321|PPPPPPPCPG

>sp|IORA_ARCFU|INDOLEPYRUVATE oxidoreductase subunit IorA|Archaeoglobus fulgidus (strain ATCC

Query: 1 PPPPPPPCPG 10
PP PP CPG
Sbjct: 370 PPRPPVLCPG 379


>sp|SYV_ARCFU|VALINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 PPPPCP 9
PP PCP
Sbjct: 428 PPEPCP 433


Query: 1 PPPPPPPC 8
PP P P C
Sbjct: 428 PPEPCPKC 435


>sp|SYV_NANEQ|VALINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 3 PPPPPCP 9
PPP P P
Sbjct: 32 PPPYPAP 38


Query: 1 PPPPPPP 7
PPP P P
Sbjct: 32 PPPYPAP 38


>sp|SYA_HALWD|ALANINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 PPPPPPPC 8
PPP P C
Sbjct: 115 PPPANPLC 122


>sp|IORA_PYRHO|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus horikoshii (strain ATCC

Query: 1 PPPPPPPCPG 10
PP PP CP
Sbjct: 378 PPRPPSLCPA 387


>sp|IORA_PYRAB|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus abyssi (strain GE5 /

Query: 1 PPPPPPPCPG 10
PP PP CP
Sbjct: 378 PPRPPSLCPA 387


>sp|SYA_HALMA|ALANINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 PPPPPPPC 8
PPP P C
Sbjct: 114 PPPANPLC 121


>sp|SURE_METTH|5'-NUCLEOTIDASE SurE|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 PPPPPP 6
PPP PP
Sbjct: 236 PPPSPP 241


Query: 2 PPPPPP 7
PPP PP
Sbjct: 236 PPPSPP 241


>sp|PUS10_METKA|TRNA pseudouridine synthase Pus10|Methanopyrus kandleri (strain AV19 /

Query: 2 PPPPPPC 8
PP P PC
Sbjct: 74 PPEPEPC 80


>sp|PRIS_AERPE|DNA primase small subunit PriS|Aeropyrum pernix (strain ATCC 700893

Query: 1 PPPPPPPCPG 10
P PP P PG
Sbjct: 192 PAPPSPDDPG 201


>sp|IORA_METTM|INDOLEPYRUVATE oxidoreductase subunit IorA|Methanothermobacter marburgensis

Query: 1 PPPPPPPCPG 10
P PP CPG
Sbjct: 365 PERPPALCPG 374


>sp|Y1804_AERPE|UNCHARACTERIZED protein APE_1804|Aeropyrum pernix (strain ATCC 700893

Query: 2 PPPPPPCPG 10
P PP PG
Sbjct: 12 PGPPTEAPG 20


>sp|AATI_ARCFU|A-TYPE ATP synthase subunit I|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 PPPPCPG 10
PP P PG
Sbjct: 523 PPLPLPG 529


>sp|AROA_THEKO|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Thermococcus kodakarensis (strain ATCC

Query: 3 PPPPPCPG 10
PP P PG
Sbjct: 68 PPEEPSPG 75


>sp|IORA_METTH|INDOLEPYRUVATE oxidoreductase subunit IorA|Methanothermobacter thermautotrophicus

Query: 1 PPPPPPPCPG 10
P PP CPG
Sbjct: 365 PERPPSLCPG 374


>sp|GCS2_HALVD|GLUTAMATE--CYSTEINE ligase|Haloferax volcanii (strain ATCC 29605

Query: 2 PPPPPPCPG 10
P PP P G
Sbjct: 41 PEPPEPLAG 49


>sp|PUR7_CENSY|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Cenarchaeum symbiosum (strain A)

Query: 2 PPPPPPCPG 10
PP PP PG
Sbjct: 243 PPRPPAIPG 251


>sp|HEM3_HYPBU|PROBABLE porphobilinogen deaminase|Hyperthermus butylicus (strain DSM 5456

Query: 1 PPPPPPPCPG 10
PP PP PG
Sbjct: 186 PPDILPPAPG 195


>sp|Y1468_METJA|UNCHARACTERIZED protein MJ1468|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PPPPPPP 7
PPP PP
Sbjct: 888 PPPKYPP 894


>sp|SYM_PYRAR|METHIONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 PPPPPPCP 9
PPP P P
Sbjct: 409 PPPGKPSP 416




66|SequenceR|335|326|PKSPRPPPPP

>sp|SYT_THESM|THREONINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 1 PKSPRPPPP 9
P PRP PP
Sbjct: 607 PYKPRPLPP 615


>sp|RFCL_METMP|REPLICATION factor C large subunit|Methanococcus maripaludis (strain DSM 14266

Query: 1 PKSPRPPPPP 10
PK PR PP
Sbjct: 438 PKRPRISEPP 447


>sp|COXX_HALMA|PROTOHEME IX farnesyltransferase|Haloarcula marismortui (strain ATCC 43049

Query: 2 KSPRPPPPP 10
K+P P P P
Sbjct: 152 KNPTPAPEP 160


>sp|RFCL_METM5|REPLICATION factor C large subunit|Methanococcus maripaludis (strain C5 /

Query: 1 PKSPRPPPPP 10
PK PR PP
Sbjct: 438 PKRPRISEPP 447


>sp|ACDD_METKA|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanopyrus kandleri

Query: 2 KSPRPPPP 9
+ PRP PP
Sbjct: 116 EEPRPNPP 123


>sp|HIS8_METMJ|HISTIDINOL-PHOSPHATE aminotransferase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 KSPRPPPP 9
++PRPP P
Sbjct: 40 ENPRPPSP 47


>sp|RNH2_SACS2|RIBONUCLEASE HII|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 KSPRPPP 8
K+P PPP
Sbjct: 180 KNPNPPP 186


>sp|RL1_THEAC|LARGE ribosomal subunit protein uL1|Thermoplasma acidophilum (strain ATCC

Query: 2 KSPRPPPP 9
K PRP PP
Sbjct: 128 KMPRPIPP 135


>sp|IORB_METTM|INDOLEPYRUVATE oxidoreductase subunit IorB|Methanothermobacter marburgensis

Query: 2 KSPRPPPP 9
KSP P PP
Sbjct: 105 KSPHPYPP 112


>sp|SYM_METHJ|METHIONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 PKSPRPPPPP 10
P SP P P P
Sbjct: 516 PLSPGPLPAP 525


>sp|RPO1N_METTW|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanothermobacter thermautotrophicus

Query: 1 PKSPRPPPP 9
P+ R PPP
Sbjct: 519 PQEGRAPPP 527


>sp|RL1_THEVO|LARGE ribosomal subunit protein uL1|Thermoplasma volcanium (strain ATCC

Query: 2 KSPRPPPP 9
K PRP PP
Sbjct: 128 KMPRPIPP 135


>sp|DNAG_CALMQ|DNA primase DnaG|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 PKSPRPPP 8
P SP+P P
Sbjct: 303 PTSPQPQP 310


>sp|FTTA_METMP|TRANSCRIPTION termination factor FttA|Methanococcus maripaludis (strain DSM 14266

Query: 1 PKSPRPPPPP 10
PK R PP P
Sbjct: 130 PKPVRTPPIP 139




67|SequenceR|340|331|ALSPTPKSPR

>sp|MTMB1_METBA|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina barkeri

Query: 3 SPTPKSP 9
SP PKSP
Sbjct: 168 SPIPKSP 174


>sp|TRPG_METJA|ANTHRANILATE synthase component 2|Methanocaldococcus jannaschii (strain ATCC

Query: 2 LSPTPKSPR 10
+SP PK+P+
Sbjct: 52 ISPGPKTPK 60


>sp|MAAL_HALMA|METHYLASPARTATE ammonia-lyase|Haloarcula marismortui (strain ATCC 43049

Query: 1 ALSPTPKSPR 10
AL P P SPR
Sbjct: 226 ALGPEPYSPR 235


>sp|Y860_PYRFU|UNCHARACTERIZED protein PF0860|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LSPTPKSPR 10
L P P SPR
Sbjct: 17 LKPLPGSPR 25


>sp|IPK_THEAC|ISOPENTENYL phosphate kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 PTPKSPR 10
P PK+PR
Sbjct: 59 PGPKNPR 65


>sp|MTMB3_METBF|MONOMETHYLAMINE methyltransferase MtmB3|Methanosarcina barkeri (strain Fusaro /

Query: 3 SPTPKSP 9
+P PKSP
Sbjct: 168 APVPKSP 174


>sp|MTMB2_METBF|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina barkeri (strain Fusaro /

Query: 3 SPTPKSP 9
+P PKSP
Sbjct: 168 APVPKSP 174


>sp|MTMB1_METBF|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina barkeri (strain Fusaro /

Query: 3 SPTPKSP 9
+P PKSP
Sbjct: 168 APVPKSP 174


>sp|MTMB2_METBA|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina barkeri

Query: 3 SPTPKSP 9
+P PKSP
Sbjct: 168 APIPKSP 174


>sp|PUS10_AERPE|TRNA pseudouridine synthase Pus10|Aeropyrum pernix (strain ATCC 700893

Query: 1 ALSPTPKSPR 10
A PTP+ PR
Sbjct: 215 AYWPTPEGPR 224


>sp|MTMB1_METAC|MONOMETHYLAMINE methyltransferase MtmB1|Methanosarcina acetivorans (strain ATCC

Query: 4 PTPKSP 9
P PKSP
Sbjct: 169 PVPKSP 174


>sp|SOXE_SULAC|SULFOCYANIN acidocaldarius (strain ATCC 33909

Query: 3 SPTPKSP 9
+PTP+SP
Sbjct: 119 TPTPQSP 125


>sp|MTMB2_METAC|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina acetivorans (strain ATCC

Query: 4 PTPKSP 9
P PKSP
Sbjct: 169 PVPKSP 174


>sp|TIAS_THEVO|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Thermoplasma volcanium (strain

Query: 1 ALSPTPKSP 9
A+ P PK+P
Sbjct: 217 AIFPNPKTP 225




68|SequenceR|345|336|SKLTTALSPT

>sp|FUMC_HALSA|FUMARATE hydratase class II|Halobacterium salinarum (strain ATCC 700922

Query: 3 LTTALSPT 10
L TAL+PT
Sbjct: 408 LATALNPT 415




69|SequenceR|350|341|TNSDYSKLTT

>sp|Y758_ARCFU|UNCHARACTERIZED protein AF_0758|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 TNSDYSKL 8
+N DYSKL
Sbjct: 166 SNQDYSKL 173


>sp|THII_SULAC|PROBABLE tRNA sulfurtransferase|Sulfolobus acidocaldarius (strain ATCC

Query: 1 TNSDYSKLT 9
T+ DYSKL+
Sbjct: 51 TDDDYSKLS 59


>sp|SYL1_SACS2|LEUCINE--TRNA ligase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 TNSDYSK 7
TN DYSK
Sbjct: 25 TNMDYSK 31




70|SequenceR|355|346|GAPGPTNSDY

>sp|RF1_PYRAB|PEPTIDE chain release factor subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 GAPGPTNSDY 10
G PGPT D+
Sbjct: 222 GGPGPTKEDF 231


>sp|RF1_THESM|PEPTIDE chain release factor subunit|Thermococcus sibiricus (strain DSM

Query: 1 GAPGPTNSDY 10
G PGPT ++
Sbjct: 222 GGPGPTKEEF 231


>sp|RF1_THEON|PEPTIDE chain release factor subunit|Thermococcus onnurineus (strain NA1)

Query: 1 GAPGPTNSDY 10
G PGPT ++
Sbjct: 222 GGPGPTKEEF 231


>sp|RF1_THEKO|PEPTIDE chain release factor subunit|Thermococcus kodakarensis (strain ATCC

Query: 1 GAPGPTNSDY 10
G PGPT ++
Sbjct: 222 GGPGPTKEEF 231


>sp|RF1_PYRHO|PEPTIDE chain release factor subunit|Pyrococcus horikoshii (strain ATCC

Query: 1 GAPGPTNSDY 10
G PGPT ++
Sbjct: 225 GGPGPTKEEF 234


>sp|RF1_PYRFU|PEPTIDE chain release factor subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GAPGPTNSDY 10
G PGPT ++
Sbjct: 225 GGPGPTKEEF 234


>sp|RF1_METKA|PEPTIDE chain release factor subunit|Methanopyrus kandleri (strain AV19 /

Query: 1 GAPGPTNSDY 10
G PGPT ++
Sbjct: 219 GGPGPTKEEF 228


>sp|RF1_PYRAE|PEPTIDE chain release factor subunit|Pyrobaculum aerophilum (strain ATCC

Query: 1 GAPGPTNSDY 10
PGPT D+
Sbjct: 227 AGPGPTKEDF 236


>sp|RISC_METTM|RIBOFLAVIN synthase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 1 GAPGPTNSD 9
G PGP D
Sbjct: 64 GMPGPEEKD 72


>sp|RISC_METTH|RIBOFLAVIN synthase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 GAPGPTNSD 9
G PGP D
Sbjct: 64 GMPGPEEKD 72


>sp|DP2L_METBF|DNA polymerase II large subunit|Methanosarcina barkeri (strain Fusaro /

Query: 2 APGPTNSDY 10
A GP NS Y
Sbjct: 997 AAGPLNSSY 1005


>sp|RF1_METBU|PEPTIDE chain release factor subunit|Methanococcoides burtonii (strain DSM

Query: 1 GAPGPTNSDY 10
G P PT ++
Sbjct: 221 GGPSPTKEEF 230


>sp|RF1_ARCFU|PEPTIDE chain release factor subunit|Archaeoglobus fulgidus (strain ATCC

Query: 1 GAPGPTNSDY 10
G P PT ++
Sbjct: 217 GGPSPTKEEF 226


>sp|RL10E_THEGJ|LARGE ribosomal subunit protein uL16|Thermococcus gammatolerans (strain

Query: 1 GAPGP 5
GAPGP
Sbjct: 25 GAPGP 29


>sp|RF11_METAC|PEPTIDE chain release factor subunit|Methanosarcina acetivorans (strain

Query: 1 GAPGPTNSDY 10
G P PT ++
Sbjct: 222 GGPSPTKEEF 231


>sp|RL10E_THEON|LARGE ribosomal subunit protein uL16|Thermococcus onnurineus (strain

Query: 1 GAPGP 5
GAPGP
Sbjct: 25 GAPGP 29


>sp|DP2L_METAC|DNA polymerase II large subunit|Methanosarcina acetivorans (strain ATCC

Query: 2 APGPTNSDY 10
A GP NS Y
Sbjct: 996 AAGPLNSSY 1004


>sp|MUTS_METTP|DNA mismatch repair protein MutS|Methanothrix thermoacetophila (strain

Query: 3 PGPTNSDY 10
PG TN Y
Sbjct: 751 PGATNKSY 758


>sp|RL10E_THEKO|LARGE ribosomal subunit protein uL16|Thermococcus kodakarensis (strain

Query: 1 GAPGP 5
GAPGP
Sbjct: 25 GAPGP 29


>sp|Y348_METJA|UNCHARACTERIZED protein MJ0348|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PGPTNSDY 10
P PT++DY
Sbjct: 536 PHPTSADY 543


>sp|THIE_CALMQ|THIAMINE-PHOSPHATE synthase|Caldivirga maquilingensis (strain ATCC 700844

Query: 3 PGPTNSDY 10
P PT DY
Sbjct: 131 PSPTKPDY 138


>sp|RF1_METMA|PEPTIDE chain release factor subunit|Methanosarcina mazei (strain ATCC

Query: 1 GAPGPTNSDY 10
G P PT ++
Sbjct: 222 GGPSPTKEEF 231


>sp|RF1_HALLT|PEPTIDE chain release factor subunit|Halorubrum lacusprofundi (strain ATCC

Query: 1 GAPGPTNSDY 10
G P PT ++
Sbjct: 228 GGPSPTKDEF 237


>sp|RF1_HALMA|PEPTIDE chain release factor subunit|Haloarcula marismortui (strain ATCC

Query: 1 GAPGPTNSDY 10
G P PT ++
Sbjct: 228 GGPSPTKDEF 237


>sp|DP2L_METTP|DNA polymerase II large subunit|Methanothrix thermoacetophila (strain

Query: 2 APGPTNSDY 10
A GP NS Y
Sbjct: 965 AGGPRNSSY 973


>sp|RL10E_PYRFU|LARGE ribosomal subunit protein uL16|Pyrococcus furiosus (strain ATCC

Query: 1 GAPGP 5
GAPGP
Sbjct: 25 GAPGP 29


>sp|RL10E_PYRAB|LARGE ribosomal subunit protein uL16|Pyrococcus abyssi (strain GE5 /

Query: 1 GAPGP 5
GAPGP
Sbjct: 25 GAPGP 29


>sp|RL10E_PYRHO|LARGE ribosomal subunit protein uL16|Pyrococcus horikoshii (strain ATCC

Query: 1 GAPGP 5
GAPGP
Sbjct: 25 GAPGP 29


>sp|RL10E_THESM|LARGE ribosomal subunit protein uL16|Thermococcus sibiricus (strain DSM

Query: 1 GAPGP 5
GAPGP
Sbjct: 25 GAPGP 29


>sp|RF1_HALVD|PEPTIDE chain release factor subunit|Haloferax volcanii (strain ATCC 29605

Query: 1 GAPGPTNSDY 10
G P PT ++
Sbjct: 228 GGPSPTKDEF 237


>sp|MTD_METTM|F420-DEPENDENT methylenetetrahydromethanopterin

Query: 1 GAPGPTNS 8
GAPGP +
Sbjct: 71 GAPGPAKA 78


>sp|MTD_METTH|F420-DEPENDENT methylenetetrahydromethanopterin

Query: 1 GAPGPTNS 8
GAPGP +
Sbjct: 71 GAPGPAKA 78


>sp|ECFA2_METHJ|ENERGY-COUPLING factor transporter ATP-binding protein|Methanospirillum hungatei

Query: 2 APGPTNSDY 10
A GP N DY
Sbjct: 104 AFGPVNLDY 112




71|SequenceR|360|351|ELPNDGAPGP

>sp|MTD_METMA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanosarcina

Query: 3 PNDGAPGP 10
PN APGP
Sbjct: 69 PNAAAPGP 76


>sp|UVRB_NATPD|UVRABC system protein B|Natronomonas pharaonis (strain ATCC 35678

Query: 1 ELPNDGAPGP 10
E PN+G P P
Sbjct: 670 EDPNEGVPSP 679


>sp|MTD_METAC|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanosarcina

Query: 3 PNDGAPGP 10
PN APGP
Sbjct: 69 PNAAAPGP 76


>sp|MTD_METTM|F420-DEPENDENT methylenetetrahydromethanopterin

Query: 3 PNDGAPGP 10
PN GAPGP
Sbjct: 68 PNPGAPGP 75


>sp|MTD_METTH|F420-DEPENDENT methylenetetrahydromethanopterin

Query: 3 PNDGAPGP 10
PN GAPGP
Sbjct: 68 PNPGAPGP 75


>sp|MTD_METVS|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanococcus

Query: 3 PNDGAPGP 10
PN APGP
Sbjct: 68 PNPAAPGP 75


>sp|MTD_METJA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanocaldococcus

Query: 3 PNDGAPGP 10
PN APGP
Sbjct: 69 PNPAAPGP 76


>sp|TRPD_METB6|ANTHRANILATE phosphoribosyltransferase|Methanoregula boonei (strain DSM 21154

Query: 5 DGAPGP 10
DGAPGP
Sbjct: 281 DGAPGP 286


>sp|Y1232_METJA|UNCHARACTERIZED protein MJ1232|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 DGAPGP 10
DG PGP
Sbjct: 55 DGVPGP 60


>sp|NASA_HALMT|ASSIMILATORY nitrate reductase|Haloferax mediterranei (strain ATCC 33500

Query: 1 ELPNDGAPGP 10
LP+D PGP
Sbjct: 377 RLPDDSGPGP 386


>sp|MTD_METS3|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanobrevibacter

Query: 3 PNDGAPGP 10
PN GAPGP
Sbjct: 68 PNPGAPGP 75


>sp|NDK_PYRFU|NUCLEOSIDE diphosphate kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 PNDGAPG 9
P D APG
Sbjct: 96 PKDAAPG 102


>sp|MTD_META3|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanococcus

Query: 3 PNDGAPGP 10
PN APGP
Sbjct: 69 PNPAAPGP 76


>sp|PYRB_META3|ASPARTATE carbamoyltransferase catalytic subunit|Methanococcus aeolicus

Query: 3 PNDGAP 8
P+DGAP
Sbjct: 105 PSDGAP 110


>sp|HELS_METJA|ATP-DEPENDENT DNA helicase Hel308|Methanocaldococcus jannaschii (strain ATCC

Query: 1 ELPNDGA 7
ELP+DG+
Sbjct: 818 ELPDDGS 824


>sp|FPOM_METMA|F(420)H(2) dehydrogenase subunit M|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 LPNDGAP 8
LPN G+P
Sbjct: 269 LPNTGSP 275


>sp|G3P_THEAC|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 PNDGAPGP 10
PND GP
Sbjct: 171 PNDSKKGP 178


>sp|NDK_PYRHO|NUCLEOSIDE diphosphate kinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 PNDGAPG 9
P D APG
Sbjct: 96 PKDAAPG 102


>sp|SYL1_SACS2|LEUCINE--TRNA ligase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 PNDGAP 8
PNDG P
Sbjct: 183 PNDGFP 188


>sp|G3P_PICTO|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Picrophilus torridus (strain ATCC 700027

Query: 3 PNDGAPGP 10
PND GP
Sbjct: 171 PNDNRKGP 178


>sp|RL3_HALWD|LARGE ribosomal subunit protein uL3|Haloquadratum walsbyi (strain DSM

Query: 4 NDGAPG 9
NDGAPG
Sbjct: 33 NDGAPG 38


>sp|SYA_THEKO|ALANINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 LPNDGAPGP 10
LPN G GP
Sbjct: 724 LPNTGLIGP 732


>sp|PDAD_HALSA|PYRUVOYL-DEPENDENT arginine decarboxylase|Halobacterium salinarum (strain ATCC

Query: 3 PNDGAPG 9
P DGAPG
Sbjct: 86 PRDGAPG 92


>sp|PDAD_HALS3|PYRUVOYL-DEPENDENT arginine decarboxylase|Halobacterium salinarum (strain ATCC 29341

Query: 3 PNDGAPG 9
P DGAPG
Sbjct: 86 PRDGAPG 92


>sp|GCH1_PYRAE|GTP cyclohydrolase 1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 LPNDGAPG 9
+P DG PG
Sbjct: 97 VPGDGVPG 104


>sp|CBIT_HALSA|PROBABLE cobalt-precorrin-6B C(15)-methyltransferase

Query: 1 ELPNDGAPGP 10
+LP+D GP
Sbjct: 5 QLPHDAKAGP 14


>sp|GCH1_PYRNV|GTP cyclohydrolase 1|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 LPNDGAPG 9
+P DG PG
Sbjct: 97 IPGDGVPG 104


>sp|AATB_NITMS|A-TYPE ATP synthase subunit B|Nitrosopumilus maritimus (strain SCM1)

Query: 3 PNDGAPGP 10
P DG P P
Sbjct: 100 PKDGLPDP 107


>sp|Y045_METTH|MEMO1 family protein MTH_45|Methanothermobacter thermautotrophicus

Query: 1 ELPNDGAPG 9
EL +DG PG
Sbjct: 68 ELVSDGIPG 76


>sp|KPTA_THEVO|PROBABLE RNA 2'-phosphotransferase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 ELPNDGAP 8
+LP DG P
Sbjct: 116 DLPTDGIP 123


>sp|MTD_METKA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanopyrus

Query: 3 PNDGAPGP 10
PN APGP
Sbjct: 73 PNPAAPGP 80




72|SequenceR|365|356|PIRSLELPND

>sp|PPSA_PYRHO|PROBABLE phosphoenolpyruvate synthase|Pyrococcus horikoshii (strain ATCC

Query: 2 IRSLELPND 10
I SLE+PN+
Sbjct: 122 IESLEMPNE 130


>sp|TRKA_PYRAB|TRK system potassium uptake protein|Pyrococcus abyssi (strain GE5 /

Query: 1 PIRSLELPND 10
PI+ L LP D
Sbjct: 168 PIKELNLPKD 177


>sp|DTDA_IGNH4|D-AMINOACYL-TRNA deacylase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 IRSLELPND 10
I++LELP D
Sbjct: 27 IKALELPED 35


>sp|CBIA_METVS|COBYRINATE a,c-diamide synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 PIRSLELPN 9
PI E+PN
Sbjct: 284 PIHDFEIPN 292


>sp|RAD50_METTH|DNA double-strand break repair Rad50|Methanothermobacter

Query: 2 IRSLELPN 9
IRSLEL N
Sbjct: 3 IRSLELKN 10


>sp|TRKA_PYRHO|TRK system potassium uptake protein|Pyrococcus horikoshii (strain ATCC

Query: 1 PIRSLELPND 10
P++ L LP D
Sbjct: 168 PVKELNLPKD 177


>sp|ASSY_HALWD|ARGININOSUCCINATE synthase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 PIRSLEL 7
PIR LEL
Sbjct: 139 PIRELEL 145


>sp|Y1120_METJA|UNCHARACTERIZED HTH-type transcriptional regulator MJ1120|Methanocaldococcus

Query: 1 PIRSLELPND 10
P R++EL N+
Sbjct: 211 PFRAIELVNE 220


>sp|SYT_METS3|THREONINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 PIRSLELPND 10
P R L LP D
Sbjct: 591 PYRGLPLPKD 600


>sp|DCDB_METJA|DCTP deaminase, dUMP-forming|Methanocaldococcus jannaschii (strain ATCC

Query: 5 LELPND 10
+ELPND
Sbjct: 104 IELPND 109


>sp|ARSA_HALSA|PUTATIVE arsenical pump-driving ATPase|Halobacterium salinarum (strain ATCC

Query: 2 IRSLELPND 10
IR +ELP+D
Sbjct: 157 IRLMELPSD 165


Query: 2 IRSLELPND 10
+R LELP+D
Sbjct: 489 LRLLELPSD 497




73|SequenceR|370|361|QCNEDPIRSL

>sp|HIS4_METAR|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanocella arvoryzae (strain

Query: 3 NEDPIRSL 10
NEDP+RSL
Sbjct: 181 NEDPVRSL 188


>sp|Y1401_PYRAB|PUTATIVE phosphate permease PYRAB14010|Pyrococcus abyssi (strain GE5 /

Query: 3 NEDPIRS 9
+EDPIRS
Sbjct: 168 SEDPIRS 174


>sp|RFCL_PYRCJ|REPLICATION factor C large subunit|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 QCNEDPIRSL 10
+C E+ +RSL
Sbjct: 196 KCEEEALRSL 205


>sp|KDAD_SACS2|2-DEHYDRO-3-DEOXY-D-ARABINONATE dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 NEDPIRSL 10
+EDPI++L
Sbjct: 32 DEDPIKAL 39


>sp|GATE_THEVO|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Thermoplasma volcanium (strain ATCC

Query: 1 QCNEDP 6
+C+EDP
Sbjct: 77 ECDEDP 82


>sp|RPO12_METKA|DNA-DIRECTED RNA polymerase subunit Rpo12|Methanopyrus kandleri (strain AV19 /

Query: 3 NEDPIR 8
NEDPIR
Sbjct: 23 NEDPIR 28




74|SequenceR|375|366|GYRNIQCNED

>sp|TOP6A_HALSA|TYPE 2 DNA topoisomerase 6|Halobacterium salinarum (strain ATCC 700922

Query: 1 GYRNIQCNED 10
G R I C ED
Sbjct: 161 GDREIHCQED 170


>sp|TOP6A_HALS3|TYPE 2 DNA topoisomerase 6|Halobacterium salinarum (strain ATCC 29341

Query: 1 GYRNIQCNED 10
G R I C ED
Sbjct: 161 GDREIHCQED 170


>sp|Y330_METJA|UNCHARACTERIZED protein MJ0330|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 IQCNED 10
I+CNED
Sbjct: 470 IRCNED 475


>sp|SERK_DESM0|ATP-DEPENDENT L-serine kinase|Desulfurococcus mucosus (strain ATCC 35584

Query: 1 GYRNIQC 7
GYR I C
Sbjct: 87 GYRKIPC 93


>sp|SERK_DESA1|ATP-DEPENDENT L-serine kinase|Desulfurococcus amylolyticus (strain DSM 18924

Query: 1 GYRNIQC 7
GYR I C
Sbjct: 87 GYRKIPC 93


>sp|NIFH2_METIV|NITROGENASE iron protein 2|Methanobacterium ivanovii

Query: 1 GYRNIQCNE 9
GY N++C E
Sbjct: 74 GYGNVKCVE 82


>sp|RAD50_NANEQ|DNA double-strand break repair Rad50|Nanoarchaeum equitans (strain

Query: 2 YRNIQCNED 10
Y+NI+C D
Sbjct: 522 YKNIECPYD 530


>sp|SYI_METB6|ISOLEUCINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 2 YRNIQCNED 10
Y N++C D
Sbjct: 775 YSNLRCKND 783


>sp|CBIA_PICTO|COBYRINATE a,c-diamide synthase|Picrophilus torridus (strain ATCC 700027

Query: 1 GYRNIQCNED 10
GYRNI+ +
Sbjct: 364 GYRNIRAESN 373


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 YRNIQCNED 10
Y+N++C D
Sbjct: 778 YQNLRCEGD 786


>sp|DTDA_SACS2|D-AMINOACYL-TRNA deacylase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 GYRNIQCNED 10
GYR + NED
Sbjct: 21 GYRFEEINED 30


>sp|NIFH_METHJ|NITROGENASE iron protein|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 GYRNIQCNE 9
GY+ ++C E
Sbjct: 77 GYKGVRCVE 85


>sp|Y1237_ARCFU|UNCHARACTERIZED protein AF_1237|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 IQCNED 10
IQC+ED
Sbjct: 59 IQCHED 64




75|SequenceR|380|371|TAQFHGYRNI

>sp|DNAG_PYRNV|DNA primase DnaG|Pyrobaculum neutrophilum (strain DSM 2338

Query: 5 HGYRNI 10
HGYRN+
Sbjct: 189 HGYRNV 194


>sp|DNAG_PYRIL|DNA primase DnaG|Pyrobaculum islandicum (strain DSM 4184

Query: 5 HGYRNI 10
HGYRN+
Sbjct: 189 HGYRNV 194


>sp|DNAG_PYRCJ|DNA primase DnaG|Pyrobaculum calidifontis (strain DSM 21063

Query: 5 HGYRNI 10
HGYRN+
Sbjct: 189 HGYRNV 194


>sp|DNAG_PYRAR|DNA primase DnaG|Pyrobaculum arsenaticum (strain DSM 13514

Query: 5 HGYRNI 10
HGYRN+
Sbjct: 189 HGYRNV 194


>sp|DNAG_PYRAE|DNA primase DnaG|Pyrobaculum aerophilum (strain ATCC 51768

Query: 5 HGYRNI 10
HGYRN+
Sbjct: 189 HGYRNV 194


>sp|DNAG_CALMQ|DNA primase DnaG|Caldivirga maquilingensis (strain ATCC 700844

Query: 5 HGYRNI 10
HGYRN+
Sbjct: 189 HGYRNV 194


>sp|SYR_PYRIL|ARGININE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 TAQFHGYR 8
+A+FH YR
Sbjct: 40 SAKFHKYR 47


>sp|DP2L_ARCFU|DNA polymerase II large subunit|Archaeoglobus fulgidus (strain ATCC

Query: 1 TAQFHGYRNI 10
+A+ GYRN+
Sbjct: 237 SAEVSGYRNL 246


>sp|DNAG_THEPD|DNA primase DnaG|Thermofilum pendens (strain DSM 2475

Query: 5 HGYRNI 10
HGY+N+
Sbjct: 188 HGYKNV 193


>sp|UPPS_AERPE|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Aeropyrum pernix

Query: 2 AQFHGYRNI 10
A + GYRN+
Sbjct: 28 AYYTGYRNV 36


>sp|AATI_THEAC|A-TYPE ATP synthase subunit I|Thermoplasma acidophilum (strain ATCC

Query: 3 QFHGYRNI 10
+F GY NI
Sbjct: 57 KFRGYENI 64


>sp|SYK_METMJ|LYSINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 QFHGYRNI 10
+FHG +N+
Sbjct: 145 KFHGLKNV 152


>sp|ASSY_HALWD|ARGININOSUCCINATE synthase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 AQFHGYR 8
A++HGY+
Sbjct: 378 AKYHGYQ 384




76|SequenceR|385|376|EVITITAQFH

>sp|ASSY_METKA|ARGININOSUCCINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 EVITITA 7
EVIT+TA
Sbjct: 29 EVITVTA 35




77|SequenceR|390|381|VELIGEVITI

>sp|RNZ_METMP|RIBONUCLEASE Z|Methanococcus maripaludis (strain DSM 14266

Query: 1 VELIGEVITI 10
VEL GE+IT+
Sbjct: 182 VELNGEIITL 191


>sp|AATA_METLZ|A-TYPE ATP synthase subunit A|Methanocorpusculum labreanum (strain ATCC

Query: 2 ELIGEVITI 10
EL+GEVI I
Sbjct: 37 ELMGEVIKI 45


>sp|AATA_METMJ|A-TYPE ATP synthase subunit A|Methanoculleus marisnigri (strain ATCC

Query: 2 ELIGEVITI 10
EL+GEVI I
Sbjct: 40 ELMGEVIKI 48


>sp|NDK_METHJ|NUCLEOSIDE diphosphate kinase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 LIGEVIT 9
LIGEVIT
Sbjct: 17 LIGEVIT 23


>sp|RFCS_THEKO|REPLICATION factor C small subunit|Thermococcus kodakarensis (strain ATCC

Query: 1 VELIGEVIT 9
+ELIGE+++
Sbjct: 533 LELIGEILS 541


>sp|AATE_THEGJ|A-TYPE ATP synthase subunit E|Thermococcus gammatolerans (strain DSM

Query: 2 ELIGEVIT 9
ELIGEV++
Sbjct: 81 ELIGEVLS 88


>sp|AATA_METKA|A-TYPE ATP synthase subunit A|Methanopyrus kandleri (strain AV19 /

Query: 3 LIGEVITI 10
LIGEVI I
Sbjct: 38 LIGEVINI 45


>sp|RIFK_METBU|RIBOFLAVIN kinase|Methanococcoides burtonii (strain DSM 6242

Query: 1 VELIGEVIT 9
VEL G VIT
Sbjct: 90 VELYGNVIT 98




78|SequenceR|395|386|MQIINVELIG

>sp|TDXH2_PICTO|PEROXIREDOXIN 2|Picrophilus torridus (strain ATCC 700027

Query: 4 INVELIG 10
+NVELIG
Sbjct: 61 LNVELIG 67


>sp|RL2_DESA1|LARGE ribosomal subunit protein uL2|Desulfurococcus amylolyticus (strain

Query: 1 MQIINVE 7
MQ++N+E
Sbjct: 104 MQVVNIE 110


>sp|TDXH1_SULME|PEROXIREDOXIN 1|Sulfuracidifex metallicus (Sulfolobus metallicus)

Query: 4 INVELIG 10
+NVEL+G
Sbjct: 62 LNVELVG 68


>sp|RS8_METST|SMALL ribosomal subunit protein uS8|Methanosphaera stadtmanae (strain

Query: 3 IINVELIG 10
I NVEL+G
Sbjct: 60 IFNVELVG 67




79|SequenceR|400|391|MLVDTMQIIN

>sp|CETZ2_HALVD|TUBULIN-LIKE protein CetZ2|Haloferax volcanii (strain ATCC 29605

Query: 2 LVDTMQIIN 10
+VDT ++IN
Sbjct: 207 VVDTSEVIN 215




80|SequenceR|405|396|PWPVPMLVDT

>sp|TRF2_THEAC|TRICORN protease-interacting factor F2|Thermoplasma acidophilum (strain

Query: 2 WPVPMLVDT 10
WP+P+ V T
Sbjct: 452 WPIPLTVMT 460


>sp|SAT_THEON|SULFATE adenylyltransferase|Thermococcus onnurineus (strain NA1)

Query: 1 PWPVPMLVD 9
PW +P+++D
Sbjct: 77 PWTIPIVID 85


>sp|TRF2_THEVO|TRICORN protease-interacting factor F2|Thermoplasma volcanium (strain ATCC

Query: 2 WPVPMLVDT 10
WP+P+ + T
Sbjct: 452 WPIPLTIIT 460


>sp|SAT_PYRAB|SULFATE adenylyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 1 PWPVPMLVD 9
PW +P+++D
Sbjct: 77 PWTIPIVLD 85


>sp|ARCS_METJA|ARCHAEOSINE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PWPVPML 7
PW +P+L
Sbjct: 154 PWEIPLL 160


>sp|SAT_IGNH4|SULFATE adenylyltransferase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 PWPVPMLVD 9
PW +P+++D
Sbjct: 77 PWTIPIILD 85


>sp|SAT_STAMF|SULFATE adenylyltransferase|Staphylothermus marinus (strain ATCC 43588

Query: 1 PWPVPMLVD 9
PW +P+++D
Sbjct: 77 PWTIPVILD 85


>sp|SAT_AERPE|SULFATE adenylyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 1 PWPVPMLVD 9
PW +P+++D
Sbjct: 77 PWTIPIVLD 85


>sp|TRF3_THEVO|TRICORN protease-interacting factor F3|Thermoplasma volcanium (strain ATCC

Query: 2 WPVPM 6
WPVP+
Sbjct: 447 WPVPV 451


>sp|TRF3_THEAC|TRICORN protease-interacting factor F3|Thermoplasma acidophilum (strain

Query: 2 WPVPM 6
WPVP+
Sbjct: 445 WPVPV 449


>sp|SYV_METKA|VALINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 PWPVPMLVD 9
PW VP++ D
Sbjct: 273 PWEVPVIAD 281


>sp|EF2_PYRAR|ELONGATION factor 2|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 PWPVPMLVD 9
P+P MLVD
Sbjct: 707 PYPESMLVD 715


>sp|RL4_NANEQ|LARGE ribosomal subunit protein uL4|Nanoarchaeum equitans (strain Kin4-M)

Query: 3 PVPMLVD 9
PVP++VD
Sbjct: 151 PVPIVVD 157


>sp|SYW_THEON|TRYPTOPHAN--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 1 PWPVPMLVD 9
PW V LVD
Sbjct: 8 PWDVEGLVD 16


>sp|SAT_HYPBU|SULFATE adenylyltransferase|Hyperthermus butylicus (strain DSM 5456

Query: 1 PWPVPMLVD 9
PW +P+++D
Sbjct: 77 PWTIPIILD 85


>sp|GUAAB_SACS2|GMP synthase [glutamine-hydrolyzing] subunit B|Saccharolobus

Query: 4 VPMLVDT 10
+P+LVDT
Sbjct: 50 IPVLVDT 56


>sp|ACDA1_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus fulgidus

Query: 2 WPVPMLVD 9
WPV +VD
Sbjct: 343 WPVEKIVD 350




81|SequenceR|410|401|ILSSEPWPVP

>sp|SYL_METTP|LEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 LSSEPWPVP 10
+S PWPVP
Sbjct: 787 VSRAPWPVP 795


>sp|NADK_METMA|NAD kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 LSSEPWPVP 10
LSS PW +P
Sbjct: 219 LSSRPWVIP 227


>sp|TRF3_THEVO|TRICORN protease-interacting factor F3|Thermoplasma volcanium (strain ATCC

Query: 3 SSEPWPVP 10
S++ WPVP
Sbjct: 443 STDRWPVP 450


>sp|PUS10_THEPD|TRNA pseudouridine synthase Pus10|Thermofilum pendens (strain DSM 2475

Query: 2 LSSEPWPVP 10
L PWP P
Sbjct: 221 LPQNPWPQP 229


>sp|NADK_METBF|NAD kinase|Methanosarcina barkeri (strain Fusaro /

Query: 2 LSSEPWPVP 10
LSS PW +P
Sbjct: 205 LSSRPWVIP 213


>sp|SYL_IGNH4|LEUCINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 4 SEPWPV 9
+EPWPV
Sbjct: 867 TEPWPV 872


>sp|HFLX_THEKO|GTPASE HflX|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 SSEPW 7
SSEPW
Sbjct: 273 SSEPW 277


>sp|SYL2_METS5|LEUCINE--TRNA ligase 2|Metallosphaera sedula (strain ATCC 51363

Query: 2 LSSEPWPVP 10
LS E WP P
Sbjct: 791 LSLESWPTP 799


>sp|APE1_AERPE|HOMING endonuclease I-ApeI|Aeropyrum pernix (strain ATCC 700893

Query: 6 PWPVP 10
PWP P
Sbjct: 92 PWPTP 96


>sp|HLY_NATA1|HALOLYSIN asiatica (strain ATCC 700177

Query: 1 ILSSEPW 7
+LSS PW
Sbjct: 335 VLSSIPW 341


>sp|DABA_NATPD|PROBABLE inorganic carbon transporter subunit|Natronomonas pharaonis (strain

Query: 6 PWPVP 10
PWP+P
Sbjct: 138 PWPMP 142


>sp|KORA_METTH|2-OXOGLUTARATE synthase subunit KorA|Methanothermobacter thermautotrophicus

Query: 6 PWPVP 10
PWP P
Sbjct: 309 PWPFP 313


>sp|SYL_THEKO|LEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 LSSEPWPVP 10
+S PWP P
Sbjct: 815 VSLAPWPEP 823


>sp|KORA_METTM|2-OXOGLUTARATE synthase subunit KorA|Methanothermobacter marburgensis (strain ATCC

Query: 6 PWPVP 10
PWP P
Sbjct: 309 PWPFP 313




82|SequenceR|415|406|TVVFDILSSE

>sp|HEM1_THEAC|GLUTAMYL-TRNA reductase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 TVVFDILSSE 10
++V+DILSS
Sbjct: 146 SIVYDILSSR 155


>sp|UPP_METTH|URACIL phosphoribosyltransferase|Methanothermobacter thermautotrophicus

Query: 1 TVVFDILSS 9
TVVF+I+SS
Sbjct: 161 TVVFNIISS 169


>sp|PYRC_THEVO|DIHYDROOROTASE volcanium (strain ATCC 51530

Query: 4 FDILSSE 10
FDILSS+
Sbjct: 272 FDILSSD 278


>sp|PYRC_THEAC|DIHYDROOROTASE acidophilum (strain ATCC 25905

Query: 4 FDILSSE 10
FDILSS+
Sbjct: 274 FDILSSD 280


>sp|CHED2_METMA|PROBABLE chemoreceptor glutamine deamidase CheD|Methanosarcina mazei (strain

Query: 1 TVVFDILSSE 10
TV+FD L+ +
Sbjct: 137 TVIFDTLTGD 146


>sp|RNP2_SULTO|RIBONUCLEASE P protein component 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 VVFDILSSE 10
V+FDI+S +
Sbjct: 28 VIFDIISED 36




83|SequenceR|420|411|ISGQCTVVFD

>sp|AGO_METJA|PROTEIN argonaute|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GQCTVVFD 10
G CTVV+D
Sbjct: 516 GGCTVVYD 523




84|SequenceR|425|416|CVETPISGQC

>sp|SYL_METTH|LEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 CVETPISGQ 9
CVE P++GQ
Sbjct: 276 CVENPVTGQ 284


>sp|WECC_PYRHO|UDP-N-ACETYL-D-MANNOSAMINE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 CVETPISG 8
CV+TP+SG
Sbjct: 82 CVQTPLSG 89


>sp|AOX2_AERPE|HEME-COPPER oxidase subunit 2|Aeropyrum pernix (strain ATCC 700893

Query: 2 VETPISGQ 9
VE+P+SG+
Sbjct: 61 VESPVSGK 68


>sp|TRPE2_HALMA|ANTHRANILATE synthase component 1 2|Haloarcula marismortui (strain ATCC 43049

Query: 2 VETPISGQC 10
V PI+G C
Sbjct: 328 VSNPIAGTC 336


>sp|DP2L_METTH|DNA polymerase II large subunit|Methanothermobacter thermautotrophicus

Query: 5 PISGQC 10
P+SG+C
Sbjct: 1023 PLSGEC 1028


>sp|DP2L_METST|DNA polymerase II large subunit|Methanosphaera stadtmanae (strain ATCC

Query: 5 PISGQC 10
P+SG+C
Sbjct: 1048 PLSGEC 1053


>sp|PDXT_METKA|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Methanopyrus kandleri (strain

Query: 3 ETPISGQC 10
+TPI G C
Sbjct: 77 DTPILGTC 84


>sp|TRPF_METTP|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 VETPISG 8
V+TP+SG
Sbjct: 126 VDTPVSG 132


>sp|DP2L_METLZ|DNA polymerase II large subunit|Methanocorpusculum labreanum (strain ATCC

Query: 5 PISGQC 10
P+SG+C
Sbjct: 1071 PVSGKC 1076




85|SequenceR|430|421|DSIITCVETP

>sp|COFD_METBU|2-PHOSPHO-L-LACTATE transferase|Methanococcoides burtonii (strain DSM 6242

Query: 1 DSIITCVETP 10
DS+ T VETP
Sbjct: 132 DSVRTIVETP 141


>sp|WECC_METVS|UDP-N-ACETYL-D-MANNOSAMINE dehydrogenase|Methanococcus vannielii (strain ATCC 35089

Query: 1 DSIITCVETP 10
D+ I CV TP
Sbjct: 83 DAFIICVPTP 92


>sp|WECC_METM7|UDP-N-ACETYL-D-MANNOSAMINE dehydrogenase|Methanococcus maripaludis (strain C7 /

Query: 1 DSIITCVETP 10
D+ I CV TP
Sbjct: 83 DAFIICVPTP 92


>sp|WECC_PYRHO|UDP-N-ACETYL-D-MANNOSAMINE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 ITCVETP 10
I CV+TP
Sbjct: 80 IICVQTP 86


>sp|WECC_METM5|UDP-N-ACETYL-D-MANNOSAMINE dehydrogenase|Methanococcus maripaludis (strain C5 /

Query: 1 DSIITCVETP 10
D+ I CV TP
Sbjct: 83 DAFIICVPTP 92


>sp|WECC_METMP|UDP-N-ACETYL-D-MANNOSAMINE dehydrogenase|Methanococcus maripaludis (strain DSM 14266

Query: 1 DSIITCVETP 10
D+ I CV TP
Sbjct: 83 DAFIICVPTP 92


>sp|URED_CENSY|UREASE accessory protein UreD|Cenarchaeum symbiosum (strain A)

Query: 1 DSIITCVE 8
DSI C+E
Sbjct: 257 DSIFKCIE 264


>sp|TRPB_META3|TRYPTOPHAN synthase beta chain|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 DSIITCV 7
DSI+ CV
Sbjct: 222 DSIVACV 228


>sp|Y2663_HALWD|UPF0212 protein HQ_2663A|Haloquadratum walsbyi (strain DSM 16790

Query: 2 SIITCVET 9
S+I CVET
Sbjct: 106 SVIDCVET 113


>sp|ACD2_ARCFU|ACETATE--COA ligase [ADP-forming] II|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 DSIITCV 7
DS+I CV
Sbjct: 594 DSVIACV 600


>sp|GSA_METS5|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Metallosphaera sedula (strain ATCC 51363

Query: 4 ITCVET 9
+TCVET
Sbjct: 180 LTCVET 185




86|SequenceR|435|426|IECTPDSIIT

>sp|NIFH_METMP|NITROGENASE iron protein|Methanococcus maripaludis (strain DSM 14266

Query: 2 ECTPDSII 9
ECTPD +I
Sbjct: 69 ECTPDKVI 76


>sp|NIFH_METMI|NITROGENASE iron protein|Methanococcus maripaludis (Methanococcus deltae)

Query: 2 ECTPDSII 9
ECTPD +I
Sbjct: 69 ECTPDKVI 76


>sp|SYM_PICTO|METHIONINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 ECTPDSII 9
+C PDSII
Sbjct: 409 KCEPDSII 416


>sp|NIFH1_METTH|NITROGENASE iron protein 1|Methanothermobacter thermautotrophicus (strain

Query: 1 IECTPDSII 9
+ CTPD +I
Sbjct: 68 VACTPDKVI 76


>sp|NIFH1_METTM|NITROGENASE iron protein 1|Methanothermobacter marburgensis (strain ATCC

Query: 3 CTPDSII 9
CTPD +I
Sbjct: 70 CTPDKVI 76


>sp|AKSA_METJA|HOMOCITRATE synthase AksA|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 IECTPDSIIT 10
IEC D IIT
Sbjct: 112 IECDVDGIIT 121


>sp|TRPF2_METMA|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 ECTPDSIIT 10
+CT DSII+
Sbjct: 86 DCTVDSIIS 94


>sp|G3P_METFO|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Methanobacterium formicicum

Query: 1 IECTPDSI 8
++CTP+ I
Sbjct: 83 VDCTPEGI 90


>sp|GLNA1_METMA|GLUTAMINE synthetase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 CTPDSIIT 10
CT D+++T
Sbjct: 209 CTADNVVT 216


>sp|G3P_METBR|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Methanobacterium bryantii

Query: 1 IECTPDSI 8
++CTP+ I
Sbjct: 83 VDCTPEGI 90


>sp|SCAF_METTH|DUF35 domain-containing scaffold protein|Methanothermobacter

Query: 1 IECTPDSI 8
++C PDSI
Sbjct: 94 VDCDPDSI 101


>sp|G3P_METFE|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Methanothermus fervidus

Query: 1 IECTPDSI 8
I+CTP+ I
Sbjct: 83 IDCTPEGI 90


>sp|ARGD_METMA|ACETYLORNITHINE aminotransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 IECTPDSII 9
+ CT DS++
Sbjct: 364 VNCTSDSVL 372


>sp|ARGD_METAC|ACETYLORNITHINE aminotransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 IECTPDSII 9
+ CT DS++
Sbjct: 364 VNCTSDSVL 372


>sp|APGM_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina barkeri (strain Fusaro /

Query: 2 ECTPDSIIT 10
ECTP IT
Sbjct: 158 ECTPPHDIT 166


>sp|APGM_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina acetivorans (strain ATCC

Query: 2 ECTPDSIIT 10
ECTP IT
Sbjct: 158 ECTPPHDIT 166


>sp|APGM_METMA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 ECTPDSIIT 10
ECTP IT
Sbjct: 158 ECTPPHDIT 166


>sp|FOLD_METBU|BIFUNCTIONAL protein FolD|Methanococcoides burtonii (strain DSM 6242

Query: 1 IECTPDSII 9
+ CTP II
Sbjct: 143 VPCTPKGII 151


>sp|G3P_METKA|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Methanopyrus kandleri (strain AV19 /

Query: 1 IECTPDSI 8
++CTP+ I
Sbjct: 90 VDCTPEGI 97




87|SequenceR|440|431|VTNQTIECTP

>sp|SYFA_THEON|PHENYLALANINE--TRNA ligase alpha subunit|Thermococcus onnurineus (strain NA1)

Query: 1 VTNQTIECTP 10
VT +T+E TP
Sbjct: 178 VTERTVEITP 187


>sp|SYFA_THEGJ|PHENYLALANINE--TRNA ligase alpha subunit|Thermococcus gammatolerans (strain DSM 15229

Query: 1 VTNQTIECTP 10
VT +T+E TP
Sbjct: 178 VTERTVEITP 187


>sp|END3_METJA|ENDONUCLEASE III|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VTNQTIEC 8
+TN+ +EC
Sbjct: 305 ITNERVEC 312


>sp|SCAF_METTH|DUF35 domain-containing scaffold protein|Methanothermobacter

Query: 1 VTNQTIECTP 10
VT+Q ++C P
Sbjct: 89 VTSQIVDCDP 98


>sp|Y548_METJA|UNCHARACTERIZED protein MJ0548|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VTNQTIE 7
VTNQTI+
Sbjct: 110 VTNQTIK 116


>sp|ENO_ARCFU|ENOLASE fulgidus (strain ATCC 49558

Query: 3 NQTIEC 8
N+T+EC
Sbjct: 17 NETVEC 22


>sp|CARB_METPE|CARBAMOYL phosphate synthase large chain|Methanosphaerula palustris (strain

Query: 1 VTNQTIECTP 10
+TN CTP
Sbjct: 330 ITNAVTGCTP 339




88|SequenceR|445|436|DVPSCVTNQT

>sp|Y1303_METHJ|UPF0182 protein Mhun_1303|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 DVPSCVTN 8
D+P C+TN
Sbjct: 467 DIPYCITN 474


>sp|PYRI_METS5|ASPARTATE carbamoyltransferase regulatory chain|Metallosphaera sedula (strain

Query: 3 PSCVTN 8
PSC+TN
Sbjct: 114 PSCITN 119


>sp|SFSA_SACS2|SUGAR fermentation stimulation protein homolog|Saccharolobus solfataricus

Query: 1 DVPSCVTNQT 10
D+P C TN T
Sbjct: 231 DIPLCKTNLT 240


>sp|SFSA_SACI6|SUGAR fermentation stimulation protein homolog|Saccharolobus islandicus

Query: 1 DVPSCVTNQT 10
D+P C TN T
Sbjct: 231 DIPLCKTNLT 240


>sp|SFSA_SACI4|SUGAR fermentation stimulation protein homolog|Saccharolobus islandicus

Query: 1 DVPSCVTNQT 10
D+P C TN T
Sbjct: 231 DIPLCKTNLT 240


>sp|SFSA_SACI3|SUGAR fermentation stimulation protein homolog|Saccharolobus islandicus

Query: 1 DVPSCVTNQT 10
D+P C TN T
Sbjct: 231 DIPLCKTNLT 240


>sp|SFSA_SACI2|SUGAR fermentation stimulation protein homolog|Saccharolobus islandicus

Query: 1 DVPSCVTNQT 10
D+P C TN T
Sbjct: 231 DIPLCKTNLT 240


>sp|ADEC_STAMF|ADENINE deaminase|Staphylothermus marinus (strain ATCC 43588

Query: 1 DVPSCV 6
D+PSCV
Sbjct: 150 DIPSCV 155


>sp|PYRI_NITMS|ASPARTATE carbamoyltransferase regulatory chain|Nitrosopumilus maritimus

Query: 3 PSCVTNQT 10
P CVTN T
Sbjct: 112 PDCVTNST 119


>sp|PYRI_CALMQ|ASPARTATE carbamoyltransferase regulatory chain|Caldivirga maquilingensis

Query: 3 PSCVTNQ 9
P C+TNQ
Sbjct: 116 PKCITNQ 122


>sp|RADB_METMJ|DNA repair and recombination protein|Methanoculleus marisnigri (strain

Query: 1 DVPSCVTNQ 9
D+P +TNQ
Sbjct: 153 DIPVLITNQ 161


>sp|IF2P_META3|PROBABLE translation initiation factor IF-2|Methanococcus aeolicus (strain

Query: 2 VPSCVTNQT 10
+P C+ N+T
Sbjct: 473 IPGCIFNKT 481


>sp|PYRI_KORCO|ASPARTATE carbamoyltransferase regulatory chain|Korarchaeum cryptofilum

Query: 3 PSCVTN 8
P+CVTN
Sbjct: 111 PNCVTN 116


>sp|PYRI_PYRAB|ASPARTATE carbamoyltransferase regulatory chain|Pyrococcus abyssi (strain GE5

Query: 3 PSCVTNQ 9
P+C+TN
Sbjct: 111 PNCITNH 117


>sp|PYRI_PYRAE|ASPARTATE carbamoyltransferase regulatory chain|Pyrobaculum aerophilum

Query: 3 PSCVTN 8
P+CVTN
Sbjct: 111 PTCVTN 116


>sp|DP2L_PYRAB|DNA polymerase II large subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 DVPSCVTNQ 9
DVP TNQ
Sbjct: 232 DVPGVETNQ 240


>sp|HUTU_HALSA|PROBABLE urocanate hydratase|Halobacterium salinarum (strain ATCC 700922

Query: 2 VPSCVTNQT 10
VP VT+QT
Sbjct: 268 VPDVVTDQT 276


>sp|HUTU_HALS3|PROBABLE urocanate hydratase|Halobacterium salinarum (strain ATCC 29341

Query: 2 VPSCVTNQT 10
VP VT+QT
Sbjct: 268 VPDVVTDQT 276


>sp|PYRI_METM6|ASPARTATE carbamoyltransferase regulatory chain|Methanococcus maripaludis

Query: 3 PSCVTNQ 9
P+C+TN+
Sbjct: 109 PNCITNK 115


>sp|PYRI_METM5|ASPARTATE carbamoyltransferase regulatory chain|Methanococcus maripaludis

Query: 3 PSCVTNQ 9
P+C+TN+
Sbjct: 109 PNCITNK 115


>sp|PYRI_METM7|ASPARTATE carbamoyltransferase regulatory chain|Methanococcus maripaludis

Query: 3 PSCVTNQ 9
P+C+TN+
Sbjct: 109 PNCITNK 115


>sp|PYRI_PYRIL|ASPARTATE carbamoyltransferase regulatory chain|Pyrobaculum islandicum

Query: 3 PSCVTN 8
P+C+TN
Sbjct: 111 PTCITN 116


>sp|PYRI_PYRHO|ASPARTATE carbamoyltransferase regulatory chain|Pyrococcus horikoshii (strain

Query: 3 PSCVTN 8
P+C+TN
Sbjct: 111 PNCITN 116


>sp|PYRI_CENSY|ASPARTATE carbamoyltransferase regulatory chain|Cenarchaeum symbiosum (strain

Query: 3 PSCVTNQT 10
P C+TN +
Sbjct: 112 PDCITNSS 119


>sp|PYRI_METMP|ASPARTATE carbamoyltransferase regulatory chain|Methanococcus maripaludis

Query: 3 PSCVTNQ 9
P+C+TN+
Sbjct: 109 PNCITNK 115


>sp|PYRI_PYRNV|ASPARTATE carbamoyltransferase regulatory chain|Pyrobaculum neutrophilum

Query: 3 PSCVTN 8
P+C+TN
Sbjct: 111 PTCITN 116


>sp|PYRI_PYRAR|ASPARTATE carbamoyltransferase regulatory chain|Pyrobaculum arsenaticum

Query: 3 PSCVTN 8
P+C+TN
Sbjct: 111 PTCITN 116


>sp|Y2028_ARCFU|UNCHARACTERIZED protein AF_2028|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 DVPSCVTNQ 9
DVPS +TN+
Sbjct: 111 DVPSKLTNE 119


>sp|AROD_METST|3-DEHYDROQUINATE dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 DVPSCVTNQT 10
D+P +TN+T
Sbjct: 70 DIPIILTNRT 79


>sp|PYRI_METJA|ASPARTATE carbamoyltransferase regulatory chain|Methanocaldococcus jannaschii

Query: 3 PSCVTNQ 9
P+C+TN+
Sbjct: 111 PNCITNK 117


>sp|PYRI_THEPD|ASPARTATE carbamoyltransferase regulatory chain|Thermofilum pendens (strain

Query: 3 PSCVTN 8
P+CVTN
Sbjct: 111 PNCVTN 116


>sp|PYRI_SACS2|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus solfataricus

Query: 3 PSCVTN 8
P C+TN
Sbjct: 116 PQCITN 121


>sp|PYRI_SACI7|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 3 PSCVTN 8
P C+TN
Sbjct: 116 PQCITN 121


>sp|PYRI_SACI6|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 3 PSCVTN 8
P C+TN
Sbjct: 116 PQCITN 121


>sp|PYRI_SACI4|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 3 PSCVTN 8
P C+TN
Sbjct: 116 PQCITN 121


>sp|PYRI_SACI3|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 3 PSCVTN 8
P C+TN
Sbjct: 116 PQCITN 121


>sp|PYRI_SACI2|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 3 PSCVTN 8
P C+TN
Sbjct: 116 PQCITN 121


>sp|PYRI_SACI1|ASPARTATE carbamoyltransferase regulatory chain|Saccharolobus islandicus

Query: 3 PSCVTN 8
P C+TN
Sbjct: 116 PQCITN 121


>sp|PYRI_METVS|ASPARTATE carbamoyltransferase regulatory chain|Methanococcus vannielii

Query: 3 PSCVTNQ 9
P+C+TN+
Sbjct: 109 PNCITNK 115




89|SequenceR|450|441|CMEDVDVPSC

>sp|CBIA_METM5|COBYRINATE a,c-diamide synthase|Methanococcus maripaludis (strain C5 /

Query: 2 MEDVDVPSC 10
+ DV+VP C
Sbjct: 285 LNDVEVPDC 293


>sp|MPTE_METTH|6-HYDROXYMETHYL-7,8-DIHYDROPTERIN pyrophosphokinase|Methanothermobacter thermautotrophicus (strain

Query: 2 MEDVDVPS 9
++D+DVPS
Sbjct: 43 VDDIDVPS 50


>sp|ADEC_STAMF|ADENINE deaminase|Staphylothermus marinus (strain ATCC 43588

Query: 5 VDVPSC 10
+D+PSC
Sbjct: 149 IDIPSC 154


>sp|ADH_SULAC|NAD-DEPENDENT alcohol dehydrogenase|Sulfolobus acidocaldarius (strain ATCC

Query: 2 MEDVDVP 8
+ED+DVP
Sbjct: 15 LEDMDVP 21


>sp|HEM11_PYRAR|GLUTAMYL-TRNA reductase 1|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 CMEDVDV 7
C+ED DV
Sbjct: 223 CLEDFDV 229


>sp|KAE1_THEGJ|TRNA N6-adenosine threonylcarbamoyltransferase|Thermococcus

Query: 2 MEDVDV 7
MEDVDV
Sbjct: 66 MEDVDV 71


>sp|DTDA_SULAC|D-AMINOACYL-TRNA deacylase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 CMEDVD 6
CME+VD
Sbjct: 203 CMENVD 208


>sp|PCCA_HALMT|PROPIONYL-COA carboxylase, biotin carboxylase and|Haloferax mediterranei (strain

Query: 2 MEDVDVP 8
M+D DVP
Sbjct: 123 MQDADVP 129


>sp|COBQ_METHJ|PROBABLE cobyric acid synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 DVDVPS 9
DVD+PS
Sbjct: 226 DVDIPS 231


>sp|KATG1_HALMA|CATALASE-PEROXIDASE 1|Haloarcula marismortui (strain ATCC 43049

Query: 3 EDVDVPS 9
+DVDVP+
Sbjct: 589 DDVDVPA 595


>sp|Y1236_ARCFU|UNCHARACTERIZED protein AF_1236|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 CMEDVDVP 8
C EDV++P
Sbjct: 130 CREDVNLP 137


>sp|HYD1D_PYRFU|SULFHYDROGENASE 1 subunit delta|Pyrococcus furiosus (strain ATCC 43587

Query: 3 EDVDVPSC 10
ED+D P C
Sbjct: 157 EDIDYPVC 164




90|SequenceR|455|446|RVTLLCMEDV

>sp|IF1A3_METAC|TRANSLATION initiation factor 1A 3|Methanosarcina acetivorans (strain ATCC

Query: 1 RVTLLCMEDV 10
RVTL CM+ V
Sbjct: 46 RVTLQCMDGV 55


>sp|IF1A2_METBF|TRANSLATION initiation factor 1A 2|Methanosarcina barkeri (strain Fusaro /

Query: 1 RVTLLCMEDV 10
RVTL CM+ V
Sbjct: 51 RVTLQCMDGV 60


>sp|IF1A_METBU|TRANSLATION initiation factor 1A|Methanococcoides burtonii (strain DSM 6242

Query: 1 RVTLLCMEDV 10
RVTL CM+ +
Sbjct: 42 RVTLQCMDGI 51


>sp|IF1A1_METBF|TRANSLATION initiation factor 1A 1|Methanosarcina barkeri (strain Fusaro /

Query: 1 RVTLLCMEDV 10
RVTL CM+ V
Sbjct: 32 RVTLQCMDGV 41


>sp|SYE_METTP|GLUTAMATE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 4 LLCMEDV 10
LLC EDV
Sbjct: 454 LLCKEDV 460


>sp|FAEHP_METTH|BIFUNCTIONAL enzyme Fae/Hps|Methanothermobacter thermautotrophicus (strain

Query: 1 RVTLLCMED 9
+VT+ C+ED
Sbjct: 66 KVTVSCLED 74


>sp|GATE_METVS|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanococcus vannielii (strain ATCC

Query: 1 RVTLLCMED 9
R+T LC+E+
Sbjct: 152 RITSLCLEE 160


>sp|PRIS_PYRCJ|DNA primase small subunit PriS|Pyrobaculum calidifontis (strain DSM

Query: 2 VTLLCMED 9
V+L C+ED
Sbjct: 105 VSLACLED 112




91|SequenceR|460|451|GNFTRRVTLL

>sp|SYW_HYPBU|TRYPTOPHAN--TRNA ligase|Hyperthermus butylicus (strain DSM 5456

Query: 3 FTRRVTL 9
F+RRVTL
Sbjct: 166 FSRRVTL 172


>sp|BARAC_PYRHO|BROAD substrate specificity amino-acid racemase|Pyrococcus horikoshii

Query: 1 GNFTRRVT 8
GNF ++VT
Sbjct: 117 GNFEKKVT 124


>sp|HTR6_HALS3|TRANSDUCER protein Htr6|Halobacterium salinarum (strain ATCC 29341

Query: 1 GNFTRRVTLL 10
N TRR T+L
Sbjct: 211 ANSTRRTTIL 220




92|SequenceR|465|456|CYTGSGNFTR

>sp|HIS8_METMJ|HISTIDINOL-PHOSPHATE aminotransferase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 CYTGSGNFT 9
CYTG+G ++
Sbjct: 8 CYTGTGGYS 16


>sp|MES_EURX9|METALLOPTERIN-DEPENDENT ergothioneine synthase|Euryarchaeota archaeon (strain ADurb.Bin009)

Query: 2 YTGSGNF 8
YTGSG+F
Sbjct: 109 YTGSGSF 115


>sp|RS19E_METJA|SMALL ribosomal subunit protein eS19|Methanocaldococcus jannaschii

Query: 2 YTGSGNFTR 10
Y GSGN R
Sbjct: 90 YKGSGNIIR 98


>sp|IF2G_THEVO|TRANSLATION initiation factor 2 subunit|Thermoplasma volcanium (strain ATCC

Query: 1 CYTGSGN--FTR 10
CY SGN +TR
Sbjct: 61 CYDASGNPYYTR 72


>sp|IF2G_THEAC|TRANSLATION initiation factor 2 subunit|Thermoplasma acidophilum (strain ATCC

Query: 1 CYTGSGN--FTR 10
CY SGN +TR
Sbjct: 61 CYDSSGNVHYTR 72


>sp|DMRX_METJA|DIHYDROMETHANOPTERIN reductase (acceptor)|Methanocaldococcus jannaschii (strain ATCC

Query: 1 CYTGSGNFTR 10
C TG+G+ R
Sbjct: 14 CITGAGHLLR 23


>sp|TMPS_METJA|THYMIDYLATE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CYTGSGNFT 9
CY GN+T
Sbjct: 50 CYNCRGNWT 58


>sp|ILVB_METAO|PROBABLE acetolactate synthase large subunit|Methanococcus aeolicus

Query: 1 CYTGSGNF 8
C TG G F
Sbjct: 451 CITGDGGF 458


>sp|OTC_METS3|ORNITHINE carbamoyltransferase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 CYTGSGN 7
C+ G GN
Sbjct: 149 CFVGDGN 155


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 4 GSGNFT 9
G+GNFT
Sbjct: 349 GNGNFT 354


>sp|RL15_THEAC|LARGE ribosomal subunit protein uL15|Thermoplasma acidophilum (strain

Query: 4 GSGNFT 9
G+GNFT
Sbjct: 107 GNGNFT 112


>sp|HLY_HALMT|HALOLYSIN mediterranei (strain ATCC 33500

Query: 2 YTGSGNFT 9
Y+GSG++T
Sbjct: 505 YSGSGSYT 512


>sp|Y1566_ARCFU|UNCHARACTERIZED protein AF_1566|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 TGSGNFTR 10
TG+G +TR
Sbjct: 198 TGTGGYTR 205


>sp|HLY_NATA1|HALOLYSIN asiatica (strain ATCC 700177

Query: 2 YTGSGNFT 9
Y+GSG++T
Sbjct: 515 YSGSGSYT 522




93|SequenceR|470|461|LTLNVCYTGS

>sp|UPPS_SULTO|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Sulfurisphaera

Query: 1 LTLNVCYTG 9
LTL +CY G
Sbjct: 156 LTLAICYGG 164


>sp|UPPS_SACS2|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Saccharolobus

Query: 1 LTLNVCYTG 9
LTL +CY G
Sbjct: 156 LTLAICYGG 164


>sp|CAS1_KORCO|CRISPR-ASSOCIATED endonuclease Cas1|Korarchaeum cryptofilum (strain OPF8)

Query: 1 LTLNVCY 7
L LNVCY
Sbjct: 212 LCLNVCY 218


>sp|WTPC_PYRFU|MOLYBDATE/TUNGSTATE import ATP-binding protein WtpC|Pyrococcus furiosus (strain ATCC

Query: 1 LTLNVC 6
LTLNVC
Sbjct: 303 LTLNVC 308


>sp|RRP4_NITMS|EXOSOME complex component Rrp4|Nitrosopumilus maritimus (strain SCM1)

Query: 1 LTLNVCYTG 9
L +N CY G
Sbjct: 78 LDINSCYVG 86


>sp|Y1470_META3|UNCHARACTERIZED solute-binding protein Maeo_1470|Methanococcus aeolicus (strain

Query: 1 LTLNVCYTGS 10
+TL V Y GS
Sbjct: 41 ITLKVSYAGS 50


>sp|ARGC_METJA|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 NVCYTG 9
N+C+TG
Sbjct: 57 NLCFTG 62




94|SequenceR|475|466|STDDGLTLNV

>sp|DAPA_METPE|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 STDDGLTLNV 10
S DDG+TL V
Sbjct: 187 SGDDGMTLPV 196


>sp|DAPA_METBU|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 STDDGLTLNV 10
S DDGLTL +
Sbjct: 184 SGDDGLTLPI 193


>sp|UPPS_HALSA|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Halobacterium

Query: 4 DGLTLNV 10
DG TLNV
Sbjct: 144 DGFTLNV 150


>sp|Y1681_ARCFU|UNCHARACTERIZED protein AF_1681|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 TDDGLTLNV 10
T GLT+NV
Sbjct: 175 TPKGLTINV 183


>sp|NADB_SULTO|L-ASPARTATE oxidase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 STDDGLTLNV 10
STDDG+ +V
Sbjct: 376 STDDGIVHSV 385




95|SequenceR|480|471|STLALSTDDG

>sp|PSB2_HALMA|PROTEASOME subunit beta 2|Haloarcula marismortui (strain ATCC 43049

Query: 1 STLALSTDDG 10
+T+ LST+DG
Sbjct: 37 TTVGLSTEDG 46




96|SequenceR|485|476|VSILTSTLAL

***** No hits found ******


97|SequenceR|490|481|PDRDPVSILT

>sp|FLAE_METJA|PUTATIVE flagella-related protein E|Methanocaldococcus jannaschii (strain

Query: 1 PDRDPVSIL 9
PD DP++I+
Sbjct: 27 PDEDPIAII 35


>sp|DPOL_METJA|DNA polymerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PDRDPV 6
P+RDP+
Sbjct: 174 PERDPI 179


>sp|NIFK_METTL|NITROGENASE molybdenum-iron protein beta chain|Methanothermococcus

Query: 3 RDPVSILT 10
R+PVSI T
Sbjct: 64 REPVSIAT 71


>sp|TRUA_THEGJ|TRNA pseudouridine synthase A|Thermococcus gammatolerans (strain DSM

Query: 1 PDRDPVSILT 10
P RDPV +T
Sbjct: 146 PGRDPVREIT 155


>sp|TRPC_METS5|INDOLE-3-GLYCEROL phosphate synthase|Metallosphaera sedula (strain ATCC 51363

Query: 2 DRDPVS 7
DRDP+S
Sbjct: 63 DRDPIS 68


>sp|DPOL_ARCFU|DNA polymerase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PDRDPVSILT 10
P++DP+ +++
Sbjct: 180 PEKDPIIVIS 189


>sp|EF2_THEAC|ELONGATION factor 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PDRDPVSILT 10
PDR PV +T
Sbjct: 343 PDRIPVDEIT 352




98|SequenceR|495|486|RLPSAPDRDP

>sp|ADPP_METJA|ADP-RIBOSE pyrophosphatase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 SAPDRDP 10
S+PDRDP
Sbjct: 108 SSPDRDP 114


>sp|DNAG_SACS2|DNA primase DnaG|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 158 RLPAGPDVD 166


>sp|DNAG_SACI7|DNA primase DnaG|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 154 RLPAGPDVD 162


>sp|DNAG_SACI6|DNA primase DnaG|Saccharolobus islandicus (strain M.16.4 /

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 154 RLPAGPDVD 162


>sp|DNAG_SACI4|DNA primase DnaG|Saccharolobus islandicus (strain M.14.25 /

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 154 RLPAGPDVD 162


>sp|DNAG_SACI3|DNA primase DnaG|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 154 RLPAGPDVD 162


>sp|DNAG_SACI2|DNA primase DnaG|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 154 RLPAGPDVD 162


>sp|DNAG_SACI1|DNA primase DnaG|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 154 RLPAGPDVD 162


>sp|DNAG_SULAC|DNA primase DnaG|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 154 RLPAGPDVD 162


>sp|DNAG_SULTO|DNA primase DnaG|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 154 RLPAGPDVD 162


>sp|DNAG_PYRAE|DNA primase DnaG|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 161 RLPAGPDVD 169


>sp|DNAG_PYRAR|DNA primase DnaG|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 161 RLPAGPDVD 169


>sp|SYW_METMA|TRYPTOPHAN--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 LPSAPDRDP 10
+P PD+DP
Sbjct: 208 VPVGPDQDP 216


>sp|DNAG_METS5|DNA primase DnaG|Metallosphaera sedula (strain ATCC 51363

Query: 1 RLPSAPD 7
RLP+ PD
Sbjct: 157 RLPAGPD 163


>sp|SYE_METKA|GLUTAMATE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 RLPSAPDRD 9
RLP PDRD
Sbjct: 429 RLPLHPDRD 437


>sp|SYW_METTH|TRYPTOPHAN--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 LPSAPDRDP 10
+P PD+DP
Sbjct: 207 VPVGPDQDP 215


>sp|GFPS_METMA|GERANYLFARNESYL diphosphate synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 LPSAPDR 8
LPSAP++
Sbjct: 102 LPSAPEK 108


>sp|SYW_THEON|TRYPTOPHAN--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 2 LPSAPDRDP 10
+P+A D+DP
Sbjct: 210 IPAAIDQDP 218


>sp|SYW_PYRAB|TRYPTOPHAN--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 LPSAPDRDP 10
+P+A D+DP
Sbjct: 211 IPAAIDQDP 219


>sp|DNAG_HYPBU|DNA primase DnaG|Hyperthermus butylicus (strain DSM 5456

Query: 1 RLPSAPDRD 9
RLP+ PD D
Sbjct: 154 RLPAGPDVD 162


>sp|CBIT_SULTO|PROBABLE cobalt-precorrin-6B C(15)-methyltransferase

Query: 1 RLPSAPDRD 9
RLP PD +
Sbjct: 2 RLPGIPDEE 10


>sp|FLAE_METJA|PUTATIVE flagella-related protein E|Methanocaldococcus jannaschii (strain

Query: 1 RLPSAPDRDP 10
+L PD DP
Sbjct: 22 KLEDIPDEDP 31


>sp|DNAG_PYRIL|DNA primase DnaG|Pyrobaculum islandicum (strain DSM 4184

Query: 1 RLPSAPDRD 9
+LP+ PD D
Sbjct: 161 KLPAGPDVD 169


>sp|SYW_PYRHO|TRYPTOPHAN--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 LPSAPDRDP 10
+P+A D+DP
Sbjct: 211 IPAAIDQDP 219


>sp|DNAG_PYRCJ|DNA primase DnaG|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 RLPSAPDRD 9
+LP+ PD D
Sbjct: 161 KLPAGPDVD 169


>sp|SYW_THESM|TRYPTOPHAN--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 2 LPSAPDRDP 10
+P+A D+DP
Sbjct: 210 IPAAIDQDP 218


>sp|SYW_PYRFU|TRYPTOPHAN--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LPSAPDRDP 10
+P+A D+DP
Sbjct: 211 IPAAIDQDP 219


>sp|SYS2_METTH|TYPE-2 serine--tRNA ligase|Methanothermobacter thermautotrophicus (strain

Query: 4 SAPDRDP 10
SAP RDP
Sbjct: 271 SAPSRDP 277


>sp|PHS_NATPD|PUTATIVE pterin-4-alpha-carbinolamine dehydratase|Natronomonas pharaonis

Query: 1 RLPSAPDRD 9
+LP+A DRD
Sbjct: 13 QLPAAWDRD 21


>sp|Y273_HALLT|PUTATIVE HTH-type transcriptional regulatory protein|Halorubrum

Query: 3 PSAPDRDP 10
PSAP+ DP
Sbjct: 202 PSAPETDP 209


>sp|SYW_THEKO|TRYPTOPHAN--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 LPSAPDRDP 10
+P+A D+DP
Sbjct: 210 IPAAIDQDP 218


>sp|SYW1_HALSA|TRYPTOPHAN--TRNA ligase 1|Halobacterium salinarum (strain ATCC 700922

Query: 2 LPSAPDRDP 10
+P PD+DP
Sbjct: 217 IPVGPDQDP 225


>sp|DPO4_HALSA|DNA polymerase IV|Halobacterium salinarum (strain ATCC 700922

Query: 1 RLPSAPDRD 9
RLP AP R+
Sbjct: 6 RLPGAPARE 14


>sp|DPO4_HALS3|DNA polymerase IV|Halobacterium salinarum (strain ATCC 29341

Query: 1 RLPSAPDRD 9
RLP AP R+
Sbjct: 6 RLPGAPARE 14




99|SequenceR|500|491|ASNAMRLPSA

***** No hits found ******


100|SequenceR|505|496|GVSILASNAM

***** No hits found ******


101|SequenceR|510|501|FIALCGVSIL

>sp|DP2L_METAR|DNA polymerase II large subunit|Methanocella arvoryzae (strain DSM

Query: 3 ALCGVSIL 10
ALCGV+++
Sbjct: 567 ALCGVTVM 574


>sp|PGK_METTH|PHOSPHOGLYCERATE kinase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 FIALCGVSI 9
F+A CGV I
Sbjct: 241 FLAGCGVKI 249


>sp|ACDD_METKA|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanopyrus kandleri

Query: 2 IALCGVSIL 10
+ALCG +L
Sbjct: 358 VALCGADLL 366


>sp|COBQ_HALMA|PROBABLE cobyric acid synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 FIALCGVSI 9
++A CGVS+
Sbjct: 26 YLADCGVSV 34


>sp|Y142_AERPE|UNCHARACTERIZED HTH-type transcriptional regulator APE_0142|Aeropyrum pernix

Query: 2 IALC-GVSIL 10
IALC G+SIL
Sbjct: 160 IALCCGISIL 169


>sp|PURP_META3|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanococcus aeolicus (strain ATCC

Query: 1 FIALCGVSIL 10
FIA CG+ L
Sbjct: 95 FIAYCGLDNL 104


>sp|BACH_HALSS|HALORHODOPSIN sp. (strain SG1)

Query: 2 IALCGVSIL 10
IAL G+SIL
Sbjct: 42 IALAGLSIL 50


>sp|BACH_HALSD|HALORHODOPSIN sodomense

Query: 2 IALCGVSIL 10
IAL G+SIL
Sbjct: 41 IALAGLSIL 49


>sp|BACH_NATPH|HALORHODOPSIN pharaonis (Natronobacterium pharaonis)

Query: 2 IALCGVSIL 10
IAL G+SIL
Sbjct: 42 IALAGLSIL 50


>sp|BACH_HALHM|HALORHODOPSIN halobium (strain mex)

Query: 2 IALCGVSIL 10
IAL G+SIL
Sbjct: 1 IALAGLSIL 9




102|SequenceR|515|506|SIVTVFIALC

***** No hits found ******


103|SequenceR|520|511|KYVLLSIVTV

>sp|COBS_HALWD|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 KYVLLSIVTV 10
+VLLSIV V
Sbjct: 49 PFVLLSIVPV 58




104|SequenceR|525|516|YEKHKKYVLL

>sp|KPRS_AERPE|RIBOSE-PHOSPHATE pyrophosphokinase|Aeropyrum pernix (strain ATCC 700893

Query: 2 EKHKKYVL 9
E HK+YVL
Sbjct: 134 EVHKEYVL 141


>sp|CBID_THEVO|COBALT-PRECORRIN-5B C(1)-methyltransferase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 YEKHKKYVL 9
YE H KY++
Sbjct: 195 YELHLKYIV 203


>sp|IF2P_METS3|PROBABLE translation initiation factor IF-2|Methanobrevibacter smithii

Query: 2 EKHKKYV 8
EKH KY+
Sbjct: 553 EKHYKYI 559




105|SequenceR|530|521|NEIPNYEKHK

>sp|NASA_HALMT|ASSIMILATORY nitrate reductase|Haloferax mediterranei (strain ATCC 33500

Query: 1 NEIPNYEKH 9
++IPN E H
Sbjct: 170 DDIPNAETH 178


>sp|RL3_AERPE|LARGE ribosomal subunit protein uL3|Aeropyrum pernix (strain ATCC 700893

Query: 2 EIPNYEKHK 10
E+P + KH+
Sbjct: 225 ELPRWHKHR 233


>sp|DHQS_METST|3-DEHYDROQUINATE synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 EIPNYEKHK 10
++PNYE+ K
Sbjct: 134 DVPNYEEAK 142


>sp|IMDH_PYRHO|INOSINE-5'-MONOPHOSPHATE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 NEIPNYEKHK 10
NE PNY K
Sbjct: 476 NEAPNYPLEK 485


>sp|IMDH_PYRAB|INOSINE-5'-MONOPHOSPHATE dehydrogenase|Pyrococcus abyssi (strain GE5 /

Query: 1 NEIPNYEKHK 10
NE PNY K
Sbjct: 476 NEAPNYPLEK 485


>sp|IMDH_PYRFU|INOSINE-5'-MONOPHOSPHATE dehydrogenase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 NEIPNY 6
NE PNY
Sbjct: 476 NEAPNY 481


>sp|IMDH_METJA|INOSINE-5'-MONOPHOSPHATE dehydrogenase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 NEIPNY 6
NE PNY
Sbjct: 487 NEAPNY 492


>sp|SYR_SULTO|ARGININE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 NEIPNYEKH 9
N I NYE+H
Sbjct: 257 NIIKNYERH 265


>sp|RL3_CALMQ|LARGE ribosomal subunit protein uL3|Caldivirga maquilingensis (strain

Query: 2 EIPNYEKHK 10
E+P + KH+
Sbjct: 227 ELPRWHKHR 235


>sp|Y1268_SULTO|PUTATIVE HTH-type transcriptional regulatory protein|Sulfurisphaera tokodaii

Query: 1 NEIPNYE 7
NEI NYE
Sbjct: 286 NEIMNYE 292


>sp|ARCH_THEGJ|PROTEIN archease|Thermococcus gammatolerans (strain DSM 15229

Query: 2 EIPNYEKHK 10
E+ +YEKH+
Sbjct: 103 EVLDYEKHE 111


>sp|IPYR_THEVO|INORGANIC pyrophosphatase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 NEIPNYEKHK 10
++IP Y+K K
Sbjct: 121 SDIPEYQKDK 130


>sp|PGK_METMP|PHOSPHOGLYCERATE kinase|Methanococcus maripaludis (strain DSM 14266

Query: 5 NYEKHK 10
+YEKHK
Sbjct: 408 SYEKHK 413




106|SequenceR|535|526|VNGPSNEIPN

>sp|TOP6B_PYRAE|TYPE 2 DNA topoisomerase 6|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 PSNEIPN 10
P NEIPN
Sbjct: 79 PGNEIPN 85


>sp|Y539_PYRAB|MEMO1 family protein PYRAB05390|Pyrococcus abyssi (strain GE5 /

Query: 3 GPSNEIPN 10
G +NE+PN
Sbjct: 203 GRANELPN 210


>sp|DGGGP_METBU|DIGERANYLGERANYLGLYCERYL phosphate synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 VNGPSNEIPN 10
VN PS IP+
Sbjct: 73 VNKPSRPIPS 82


>sp|EF1A_HALWD|ELONGATION factor 1-alpha|Haloquadratum walsbyi (strain DSM 16790

Query: 4 PSNEIP 9
PSNEIP
Sbjct: 391 PSNEIP 396


>sp|Y795_METJA|UNCHARACTERIZED protein MJ0795|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VNGPSNEIP 9
+NG NEIP
Sbjct: 433 INGNVNEIP 441


>sp|Y157_METAC|UPF0251 protein MA_0157|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 GPSNEIP 9
GP +EIP
Sbjct: 22 GPESEIP 28


>sp|Y1807_METBF|PROTEIN Mbar_A1807|Methanosarcina barkeri (strain Fusaro /

Query: 1 VNGPSNEIP 9
+N P+ E+P
Sbjct: 112 INAPAEELP 120




107|SequenceR|540|531|GKSRVVNGPS

>sp|RS8E_ARCFU|SMALL ribosomal subunit protein eS8|Archaeoglobus fulgidus (strain ATCC

Query: 1 GKSRVVNGPS 10
GK+RV N PS
Sbjct: 105 GKARVTNRPS 114


>sp|ACDA1_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus fulgidus

Query: 1 GKSRVVNGP 9
GK+RV GP
Sbjct: 477 GKTRVGRGP 485


>sp|Y1291_METJA|UNCHARACTERIZED protein MJ1291|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GKSRVVNGP 9
G SR+ N P
Sbjct: 73 GDSRITNNP 81


>sp|RS8_PICTO|SMALL ribosomal subunit protein uS8|Picrophilus torridus (strain ATCC

Query: 1 GKSRVVNGPS 10
GKS V+ GP+
Sbjct: 20 GKSEVIIGPA 29


>sp|Y355_METJA|UNCHARACTERIZED protein MJ0355|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KSRVVNG 8
KS++VNG
Sbjct: 88 KSKIVNG 94


>sp|DP2L_METTP|DNA polymerase II large subunit|Methanothrix thermoacetophila (strain

Query: 1 GKSRVVN 7
GKSR+VN
Sbjct: 598 GKSRLVN 604


>sp|RS8E_METAR|SMALL ribosomal subunit protein eS8|Methanocella arvoryzae (strain DSM

Query: 1 GKSRVVNGP 9
GK+R+ N P
Sbjct: 105 GKARITNRP 113


>sp|DNAG_METMA|DNA primase DnaG|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GKSRVVNGPS 10
GKSR+ GP+
Sbjct: 157 GKSRIPCGPN 166




108|SequenceR|545|536|LFVSLGKSRV

>sp|RRP42_THEVO|EXOSOME complex component Rrp42|Thermoplasma volcanium (strain ATCC 51530

Query: 2 FVSLGKSRV 10
+V+LGK+RV
Sbjct: 53 YVALGKTRV 61


>sp|IF2P_THEVO|PROBABLE translation initiation factor IF-2|Thermoplasma volcanium (strain

Query: 1 LFVSLGKSR 9
LFV+ GKS+
Sbjct: 287 LFVNTGKSQ 295




109|SequenceR|550|541|AKARNLFVSL

>sp|AMID_SACS2|AMIDASE solfataricus (strain ATCC 35092

Query: 1 AKARNLFVSL 10
AKARNL + L
Sbjct: 400 AKARNLSIVL 409




110|SequenceR|555|546|GPFFVAKARN

>sp|TRM4_METJA|TRNA (cytosine(48)-C(5))-methyltransferase|Methanocaldococcus jannaschii

Query: 2 PFFVAKAR 9
PFF+AK R
Sbjct: 265 PFFIAKLR 272


>sp|GSA_METJA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PFFVAKARN 10
PFFV KA++
Sbjct: 34 PFFVEKAKD 42


>sp|SYR_THEAC|ARGININE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 GPFFVAKARN 10
GP + +ARN
Sbjct: 121 GPLHIGRARN 130


>sp|SYR_NATPD|ARGININE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 GPFFVAKARN 10
GP V +ARN
Sbjct: 127 GPVHVGRARN 136


>sp|SYR_HALMA|ARGININE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 GPFFVAKARN 10
GP V +ARN
Sbjct: 127 GPVHVGRARN 136


>sp|SYR_HALLT|ARGININE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 GPFFVAKARN 10
GP V +ARN
Sbjct: 128 GPVHVGRARN 137


>sp|RL2_THEGJ|LARGE ribosomal subunit protein uL2|Thermococcus gammatolerans (strain

Query: 3 FFVAKARN 10
+++AKARN
Sbjct: 179 YYIAKARN 186


>sp|RL2_THEKO|LARGE ribosomal subunit protein uL2|Thermococcus kodakarensis (strain

Query: 3 FFVAKARN 10
+++AKARN
Sbjct: 179 YYIAKARN 186


>sp|RL2_THEON|LARGE ribosomal subunit protein uL2|Thermococcus onnurineus (strain NA1)

Query: 3 FFVAKARN 10
+++AKARN
Sbjct: 179 YYIAKARN 186


>sp|SYR_METVS|ARGININE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 GPFFVAKARN 10
GPF + RN
Sbjct: 125 GPFHIGHGRN 134


>sp|SYR_METMP|ARGININE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 GPFFVAKARN 10
GPF + RN
Sbjct: 125 GPFHIGHGRN 134


>sp|SYR_METM7|ARGININE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 GPFFVAKARN 10
GPF + RN
Sbjct: 125 GPFHIGHGRN 134


>sp|SYR_METM6|ARGININE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 1 GPFFVAKARN 10
GPF + RN
Sbjct: 125 GPFHIGHGRN 134


>sp|SYR_METM5|ARGININE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 1 GPFFVAKARN 10
GPF + RN
Sbjct: 125 GPFHIGHGRN 134


>sp|NDK_IGNH4|NUCLEOSIDE diphosphate kinase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 GPFFVAKARN 10
G F ++KARN
Sbjct: 103 GDFALSKARN 112




111|SequenceR|560|551|DKEQNGPFFV

>sp|EF1A_METAR|ELONGATION factor 1-alpha|Methanocella arvoryzae (strain DSM 22066

Query: 2 KEQNGPF 8
KEQN PF
Sbjct: 369 KEQNPPF 375


>sp|GLNA_METJA|GLUTAMINE synthetase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KEQNGPFFV 10
KE NG +FV
Sbjct: 131 KEMNGEYFV 139


>sp|AGLB_METJA|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 DKEQNGPFF 9
DK + G FF
Sbjct: 780 DKREKGAFF 788


>sp|TRM56_PYRHO|TRNA (cytidine(56)-2'-O)-methyltransferase|Pyrococcus horikoshii

Query: 2 KEQNGPFFV 10
K GPFF+
Sbjct: 52 KRWGGPFFI 60




112|SequenceR|565|556|NKLLPDKEQN

>sp|KPRS_AERPE|RIBOSE-PHOSPHATE pyrophosphokinase|Aeropyrum pernix (strain ATCC 700893

Query: 2 KLLPDKEQ 9
KL PD+E+
Sbjct: 38 KLFPDEEE 45


>sp|PORA_METTM|PYRUVATE synthase subunit PorA|Methanothermobacter marburgensis (strain ATCC

Query: 3 LLPDKE 8
LLPDKE
Sbjct: 336 LLPDKE 341


>sp|RPO1N_THECE|DNA-DIRECTED RNA polymerase subunit Rpo1N|Thermococcus celer

Query: 2 KLLPDKEQ 9
KL+PD+E+
Sbjct: 592 KLIPDEEE 599


>sp|FRHD_METJA|COENZYME F420 hydrogenase subunit delta|Methanocaldococcus jannaschii

Query: 1 NKLLPDKEQ 9
NK+L DKE+
Sbjct: 52 NKILTDKEK 60


>sp|SYM_METS3|METHIONINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 NKLLPDK 7
NK LPD+
Sbjct: 131 NKFLPDR 137




113|SequenceR|572|561|SVGKFEQNKLLP

>sp|CH10_METBF|CO-CHAPERONIN GroES|Methanosarcina barkeri (strain Fusaro /

Query: 1 SVGKFEQNKLLP 12
SVG FE K LP
Sbjct: 42 SVGTFEDGKELP 53


>sp|OFOB2_SULTO|2-OXOACID:FERREDOXIN oxidoreductase 2, subunit beta|Sulfurisphaera tokodaii (strain DSM

Query: 2 VGKFEQNKLLP 12
+G F QN+L+P
Sbjct: 252 IGIFYQNELVP 262


>sp|OFOB_SULSP|2-OXOACID:FERREDOXIN oxidoreductase subunit beta|Sulfolobus sp

Query: 2 VGKFEQNKLLP 12
+G F QN+L+P
Sbjct: 252 IGIFYQNELVP 262


>sp|OFOB1_SULTO|2-OXOACID:FERREDOXIN oxidoreductase 1, subunit beta|Sulfurisphaera tokodaii (strain DSM

Query: 2 VGKFEQNKLLP 12
+G F QN+L+P
Sbjct: 252 IGIFYQNELVP 262


>sp|HERA_PYRFU|DNA double-strand break repair helicase|Pyrococcus furiosus (strain

Query: 2 VGKFEQNKLLP 12
+GK E N+L+P
Sbjct: 91 LGKIEGNELVP 101


>sp|MCRB_METBF|METHYL-COENZYME M reductase subunit beta|Methanosarcina barkeri (strain Fusaro /

Query: 1 SVGKFEQNKLL 11
+VG FE+++LL
Sbjct: 226 AVGMFERHQLL 236


>sp|MCRB_METFE|METHYL-COENZYME M reductase subunit beta|Methanothermus fervidus

Query: 1 SVGKFEQNKLL 11
+VGKFE+ LL
Sbjct: 229 AVGKFERLHLL 239


>sp|CH10_METMA|CO-CHAPERONIN GroES|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SVGKFEQNKLLP 12
+VG FE K LP
Sbjct: 42 AVGTFEDGKELP 53


>sp|CH10_METAC|CO-CHAPERONIN GroES|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 SVGKFEQNKLLP 12
+VG FE K LP
Sbjct: 59 AVGTFEDGKELP 70


>sp|ASPD_METBU|L-ASPARTATE dehydrogenase|Methanococcoides burtonii (strain DSM 6242

Query: 1 SVGKFEQNKLL 11
SVG F KLL
Sbjct: 94 SVGAFADKKLL 104


>sp|Y348_METJA|UNCHARACTERIZED protein MJ0348|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SVGKFEQNK 9
S+G FE+N+
Sbjct: 342 SIGTFERNE 350


>sp|MCRB_METVO|METHYL-COENZYME M reductase subunit beta|Methanococcus voltae

Query: 1 SVGKFEQNKLL 11
+VG FE+ LL
Sbjct: 229 AVGSFERQHLL 239


>sp|HIS8_METVS|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus vannielii (strain ATCC 35089

Query: 1 SVGKFEQNK 9
S+G FE+N+
Sbjct: 352 SIGTFEENE 360


>sp|HIS8_METM5|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C5 /

Query: 1 SVGKFEQNK 9
S+G FE+N+
Sbjct: 352 SIGTFEENE 360


>sp|HIS8_METM6|HISTIDINOL-PHOSPHATE aminotransferase|Methanococcus maripaludis (strain C6 /

Query: 1 SVGKFEQNK 9
S+G FE+N+
Sbjct: 352 SIGTFEENE 360


>sp|Y1086_METJA|UNCHARACTERIZED protein MJ1086|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 FEQNKLLP 12
FE NKL P
Sbjct: 179 FEDNKLKP 186


>sp|Y783_METJA|UNCHARACTERIZED protein MJ0783|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SVGKFEQNKL 10
S+ FE+NKL
Sbjct: 73 SLDDFERNKL 82


>sp|RTCA_ARCFU|RNA 3'-terminal phosphate cyclase|Archaeoglobus fulgidus (strain ATCC

Query: 2 VGKFEQNKLL 11
V KFE NK++
Sbjct: 317 VVKFEGNKII 326




THE END