TM2D3_HUMAN Blast OutputR
Archaea
1|SequenceR|10|1|GRLPLVGGAM

>sp|SRP54_METM5|SIGNAL recognition particle 54 kDa|Methanococcus maripaludis (strain C5 /

Query: 1 GRLPLVGGAM 10
G++P +GG M
Sbjct: 430 GKMPKMGGQM 439


>sp|DAPA_ARCFU|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 RLPLVGGA 9
+LP++GGA
Sbjct: 67 KLPVIGGA 74


>sp|SRP54_METVS|SIGNAL recognition particle 54 kDa|Methanococcus vannielii (strain ATCC

Query: 1 GRLPLVGGAM 10
G++P +GG M
Sbjct: 430 GKMPKMGGKM 439


>sp|SRP54_METMP|SIGNAL recognition particle 54 kDa|Methanococcus maripaludis (strain DSM

Query: 1 GRLPLVGGAM 10
G++P +GG M
Sbjct: 430 GKMPKMGGQM 439


>sp|CYAS_METPE|CYSTEATE synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 GRLPLVGGAM 10
GRLP GG +
Sbjct: 60 GRLPFTGGTV 69


>sp|SRP54_METM7|SIGNAL recognition particle 54 kDa|Methanococcus maripaludis (strain C7 /

Query: 1 GRLPLVGGAM 10
G++P +GG M
Sbjct: 430 GKMPKMGGQM 439


>sp|SRP54_METM6|SIGNAL recognition particle 54 kDa|Methanococcus maripaludis (strain C6 /

Query: 1 GRLPLVGGAM 10
G++P +GG M
Sbjct: 430 GKMPKMGGQM 439


>sp|MTSA_METMA|METHYLATED-THIOL--COENZYME M methyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GRLPLVGGAM 10
GR+P+V GA+
Sbjct: 118 GRIPVVLGAI 127


>sp|Y1287_METMA|UPF0313 protein MM_1287|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GRLPLVGGA 9
GRL LVG A
Sbjct: 605 GRLDLVGNA 613


>sp|SRP54_METKA|SIGNAL recognition particle 54 kDa|Methanopyrus kandleri (strain AV19 /

Query: 1 GRLPLVGGAM 10
GR+P +GG +
Sbjct: 428 GRIPRIGGEL 437


>sp|MTSA_METBA|METHYLATED-THIOL--COENZYME M methyltransferase|Methanosarcina barkeri

Query: 1 GRLPLVGGAM 10
GR+P+V GA+
Sbjct: 118 GRIPVVLGAI 127


>sp|TDXH1_PICTO|PEROXIREDOXIN 1|Picrophilus torridus (strain ATCC 700027

Query: 1 GRLPLVG 7
G++PL+G
Sbjct: 3 GKMPLIG 9


>sp|Y415_METJA|UNCHARACTERIZED protein MJ0415|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 RLPLVGGAM 10
RL L+GG M
Sbjct: 3 RLKLLGGVM 11


>sp|Y1185_METJA|UNCHARACTERIZED protein MJ1185|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GRLPLVGG 8
G LP++GG
Sbjct: 52 GVLPVIGG 59


>sp|Y4618_METAC|UPF0313 protein MA_4618|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GRLPLVGGA 9
GRL LVG A
Sbjct: 723 GRLDLVGNA 731


>sp|DHE2_HALSI|NAD-SPECIFIC glutamate dehydrogenase A|Halobacterium salinarum (Halobacterium

Query: 1 GRLPLVGGA 9
G+ P+VGG+
Sbjct: 195 GKPPVVGGS 203


>sp|FLAB3_NATMM|FLAGELLIN B3|Natrialba magadii (strain ATCC 43099

Query: 3 LPLVGGAM 10
LP +GGA+
Sbjct: 135 LPSIGGAL 142


>sp|PPSA_AERPE|PHOSPHOENOLPYRUVATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 3 LPLVGG 8
LPLVGG
Sbjct: 17 LPLVGG 22


>sp|SELD_METJA|SELENIDE, water dikinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 PLVGGAM 10
PL+GGA+
Sbjct: 148 PLIGGAV 154


>sp|EF1A_METVA|ELONGATION factor 1-alpha|Methanococcus vannielii

Query: 1 GRLPLVGGAM 10
GRL L GGA+
Sbjct: 25 GRLLLDGGAI 34


>sp|YPZ8_METTF|UNCHARACTERIZED protein ORF8'|Methanothermobacter thermautotrophicus

Query: 1 GRLPLVGGAM 10
GR LVGGA+
Sbjct: 250 GRCDLVGGAV 259


>sp|EF1A_METVS|ELONGATION factor 1-alpha|Methanococcus vannielii (strain ATCC 35089

Query: 1 GRLPLVGGAM 10
GRL L GGA+
Sbjct: 25 GRLLLDGGAI 34




2|SequenceR|15|6|CLARLGRLPL

>sp|PDXS_DESA1|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Desulfurococcus amylolyticus

Query: 3 ARLGRLPL 10
ARLGRLP+
Sbjct: 239 ARLGRLPV 246


>sp|PDXS_AERPE|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Aeropyrum pernix (strain ATCC

Query: 3 ARLGRLPL 10
ARLGRLP+
Sbjct: 239 ARLGRLPV 246


>sp|PDXS_HYPBU|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Hyperthermus butylicus (strain

Query: 3 ARLGRLPL 10
ARLGRLP+
Sbjct: 239 ARLGRLPV 246


>sp|PDXS_PYRAR|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Pyrobaculum arsenaticum (strain

Query: 3 ARLGRLPL 10
ARLGRLP+
Sbjct: 241 ARLGRLPV 248


>sp|TRPB_METLZ|TRYPTOPHAN synthase beta chain|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 CLARLGRLP 9
CL + GRLP
Sbjct: 215 CLEKEGRLP 223


>sp|Y691_METJA|DNA-BINDING protein MJ0691|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LARLGRLPL 10
LA+LGRLP+
Sbjct: 72 LAQLGRLPI 80


>sp|PDXS_METKA|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Methanopyrus kandleri (strain

Query: 2 LARLGRLPL 10
+A LGRLP+
Sbjct: 198 VASLGRLPV 206


>sp|PDXS_THEAC|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermoplasma acidophilum (strain

Query: 2 LARLGRLPL 10
+ R+GRLP+
Sbjct: 242 IRRMGRLPV 250


>sp|FPOH_METMA|F(420)H(2) dehydrogenase subunit H|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 LARLGRLPL 10
+A LGRLP
Sbjct: 219 MADLGRLPF 227


>sp|PDXS_THEON|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermococcus onnurineus (strain

Query: 2 LARLGRLPL 10
+ +LGRLP+
Sbjct: 242 IKKLGRLPV 250


>sp|PDXS_THEKO|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermococcus kodakarensis

Query: 2 LARLGRLPL 10
+ +LGRLP+
Sbjct: 242 IKKLGRLPV 250


>sp|PDXS_THEGJ|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermococcus gammatolerans

Query: 2 LARLGRLPL 10
+ +LGRLP+
Sbjct: 242 IKKLGRLPV 250


>sp|PDXS_PYRHO|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Pyrococcus horikoshii (strain

Query: 2 LARLGRLPL 10
+ +LGRLP+
Sbjct: 242 IKKLGRLPV 250


>sp|PDXS_PYRFU|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Pyrococcus furiosus (strain ATCC

Query: 2 LARLGRLPL 10
+ +LGRLP+
Sbjct: 242 IKKLGRLPV 250


>sp|PDXS_PYRAB|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Pyrococcus abyssi (strain GE5 /

Query: 2 LARLGRLPL 10
+ +LGRLP+
Sbjct: 242 IKKLGRLPV 250


>sp|PDXS_METTH|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Methanothermobacter

Query: 3 ARLGRLPL 10
A+LG+LP+
Sbjct: 199 AKLGKLPV 206


>sp|SPSS_METTH|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 CLARLGRLPL 10
C +GRLP+
Sbjct: 189 CAYSMGRLPV 198


>sp|PYRI_HYPBU|ASPARTATE carbamoyltransferase regulatory chain|Hyperthermus butylicus

Query: 1 CLARLGRLPL 10
C+ R+GR P+
Sbjct: 115 CITRVGREPV 124




3|SequenceR|20|11|FLLVRCLARL

>sp|GATE_METJA|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanocaldococcus jannaschii (strain

Query: 1 FLLVRCLARL 10
FL+ RC+A+L
Sbjct: 601 FLMGRCMAKL 610


>sp|Y1747_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 3 LVRCLARL 10
LVRCL RL
Sbjct: 54 LVRCLNRL 61


>sp|FAU1_METKA|PROBABLE ribonuclease FAU-1|Methanopyrus kandleri (strain AV19 /

Query: 3 LVRCLAR 9
L+RCL R
Sbjct: 304 LIRCLTR 310


>sp|Y011_METJA|UNCHARACTERIZED protein MJ0011|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FLLVRC 6
F+LVRC
Sbjct: 114 FILVRC 119


>sp|RS27_HYPBU|SMALL ribosomal subunit protein eS27|Hyperthermus butylicus (strain DSM

Query: 1 FLLVRC 6
FLLVRC
Sbjct: 16 FLLVRC 21




4|SequenceR|25|16|CFQSLFLLVR

***** No hits found ******


5|SequenceR|30|21|GGSLICFQSL

>sp|TMCA_METKA|TRNA(MET) cytidine acetyltransferase TmcA|Methanopyrus kandleri (strain AV19

Query: 1 GGSLICFQS 9
GG L+ FQ+
Sbjct: 154 GGGLVIFQT 162


>sp|LYSZ_PYRCJ|PUTATIVE [LysW]-aminoadipate/[LysW]-glutamate kinase|Pyrobaculum

Query: 1 GGSLIC 6
GGS+IC
Sbjct: 7 GGSVIC 12


>sp|LYSZ_PYRAR|PUTATIVE [LysW]-aminoadipate/[LysW]-glutamate kinase|Pyrobaculum

Query: 1 GGSLIC 6
GGS+IC
Sbjct: 7 GGSVIC 12


>sp|LYSZ_CALMQ|PUTATIVE [LysW]-aminoadipate/[LysW]-glutamate kinase|Caldivirga

Query: 1 GGSLIC 6
GGS+IC
Sbjct: 7 GGSVIC 12




6|SequenceR|35|26|AQSQEGGSLI

***** No hits found ******


7|SequenceR|40|31|ISQALAQSQE

>sp|SYS_HALWD|SERINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 SQALAQSQE 10
S+A+AQSQE
Sbjct: 72 SEAIAQSQE 80




8|SequenceR|45|36|PGPDKISQAL

>sp|PURP_METAR|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanocella arvoryzae (strain DSM

Query: 2 GPDKISQA 9
GPDKI +A
Sbjct: 149 GPDKIDRA 156


>sp|RS4E_SULTO|SMALL ribosomal subunit protein eS4|Sulfurisphaera tokodaii (strain DSM

Query: 1 PGPDKISQAL 10
PGP K+S+++
Sbjct: 28 PGPHKLSESI 37


>sp|COFG_METMJ|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 PGPDKISQAL 10
PGPD+I A+
Sbjct: 217 PGPDEIGAAI 226


>sp|EF2_THESM|ELONGATION factor 2|Thermococcus sibiricus (strain DSM 12597

Query: 1 PGPDKISQAL 10
P PD+I QA+
Sbjct: 493 PMPDEIYQAI 502


>sp|3MGH_METMJ|PUTATIVE 3-methyladenine DNA glycosylase|Methanoculleus marisnigri (strain

Query: 2 GPDKISQAL 10
GP K++QAL
Sbjct: 123 GPGKLTQAL 131


>sp|EF2_PYRWO|ELONGATION factor 2|Pyrococcus woesei

Query: 1 PGPDKISQAL 10
P PD+I QA+
Sbjct: 493 PMPDEIYQAI 502


>sp|EF2_PYRFU|ELONGATION factor 2|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PGPDKISQAL 10
P PD+I QA+
Sbjct: 493 PMPDEIYQAI 502


>sp|EF2_THEKO|ELONGATION factor 2|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PGPDKISQAL 10
P PD+I QA+
Sbjct: 493 PMPDEIYQAI 502




9|SequenceR|50|41|TFTRTPGPDK

>sp|MBD_THEAC|MEVALONATE 3,5-bisphosphate decarboxylase|Thermoplasma acidophilum (strain

Query: 2 FTRTPGPDK 10
FT+TPG D+
Sbjct: 393 FTQTPGEDE 401


>sp|FDHD_SACS2|SULFUR carrier protein FdhD|Saccharolobus solfataricus (strain ATCC

Query: 4 RTPGPDK 10
RTPG DK
Sbjct: 48 RTPGDDK 54


>sp|Y762_ARCFU|UNCHARACTERIZED protein AF_0762|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 FTRTPGPD 9
F +TP PD
Sbjct: 126 FNKTPTPD 133


>sp|POK_METHJ|PANTOATE kinase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 RTPGPD 9
+TPGPD
Sbjct: 157 KTPGPD 162


>sp|COXX1_CENSY|PROTOHEME IX farnesyltransferase 1|Cenarchaeum symbiosum (strain A)

Query: 2 FTRTPGPD 9
T+TP PD
Sbjct: 255 LTKTPTPD 262


>sp|TFE_META3|TRANSCRIPTION factor E|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 TFTRTPG 7
TFT+ PG
Sbjct: 83 TFTKLPG 89


>sp|VHUG_METVO|F420-NON-REDUCING hydrogenase vhu subunit G|Methanococcus voltae

Query: 1 TFTRTPGPDK 10
TF TP P+K
Sbjct: 196 TFEGTPDPEK 205


>sp|CUTA_SULAC|GLYCERALDEHYDE dehydrogenase large chain|Sulfolobus acidocaldarius (strain ATCC

Query: 2 FTRTPGP 8
FT+TP P
Sbjct: 730 FTKTPTP 736


>sp|PSB1_HALMA|PROTEASOME subunit beta 1|Haloarcula marismortui (strain ATCC 43049

Query: 5 TPGPD 9
TPGPD
Sbjct: 5 TPGPD 9


>sp|IF6_METAR|TRANSLATION initiation factor 6|Methanocella arvoryzae (strain DSM 22066

Query: 1 TFTRTPGPD 9
T TRT GP+
Sbjct: 200 TGTRTSGPE 208




10|SequenceR|55|46|ARPVVTFTRT

>sp|SYFB_THEGJ|PHENYLALANINE--TRNA ligase beta subunit|Thermococcus gammatolerans (strain DSM 15229

Query: 1 ARPVVTFTRT 10
A+P VTFT T
Sbjct: 483 AQPRVTFTDT 492




11|SequenceR|60|51|ETSEAARPVV

>sp|Y971_METJA|UNCHARACTERIZED protein MJ0971|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 EAARPVV 10
EAA+PVV
Sbjct: 94 EAAKPVV 100




12|SequenceR|65|56|VYPPIETSEA

>sp|Y1577_METJA|UNCHARACTERIZED protein MJ1577|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VYPPIET 7
+YPPIET
Sbjct: 160 IYPPIET 166


>sp|ARTA_NATPD|ARCHAEOSORTASE A|Natronomonas pharaonis (strain ATCC 35678

Query: 1 VYPPIETSE 9
+Y P ETSE
Sbjct: 111 IYLPFETSE 119


>sp|TRPE1_HALMA|ANTHRANILATE synthase component 1 1|Haloarcula marismortui (strain ATCC 43049

Query: 3 PPIETSEA 10
PP+ET EA
Sbjct: 197 PPVETDEA 204


>sp|DNAG_METLZ|DNA primase DnaG|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 VYPPIETSE 9
+ PPI TSE
Sbjct: 327 IIPPITTSE 335


>sp|AATB_METAR|A-TYPE ATP synthase subunit B|Methanocella arvoryzae (strain DSM 22066

Query: 1 VYPPIETS 8
+YPPI S
Sbjct: 336 IYPPINVS 343


>sp|SYY_PYRCJ|TYROSINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 VYPPIETSE 9
VYPP++ ++
Sbjct: 168 VYPPLQVAD 176


>sp|AROE_HALWD|SHIKIMATE dehydrogenase (NADP(+))|Haloquadratum walsbyi (strain DSM 16790

Query: 1 VYPPIET 7
VY PIET
Sbjct: 214 VYTPIET 220


>sp|SYY_PYRAR|TYROSINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 VYPPIETSE 9
VYPP++ ++
Sbjct: 168 VYPPLQVAD 176


>sp|SYY_PYRIL|TYROSINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 VYPPIETSE 9
VYPP++ ++
Sbjct: 168 VYPPLQVAD 176


>sp|SYY1_PYRAE|TYROSINE--TRNA ligase 1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 VYPPIETSE 9
VYPP++ ++
Sbjct: 168 VYPPLQVAD 176


>sp|SYA_THEVO|ALANINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 VYPPIET 7
VYP IET
Sbjct: 489 VYPNIET 495


>sp|AROE_SACI6|SHIKIMATE dehydrogenase (NADP(+))|Saccharolobus islandicus (strain M.16.4 /

Query: 1 VYPPIET 7
VY P+ET
Sbjct: 211 VYKPVET 217


>sp|AROE_SACI4|SHIKIMATE dehydrogenase (NADP(+))|Saccharolobus islandicus (strain M.14.25 /

Query: 1 VYPPIET 7
VY P+ET
Sbjct: 211 VYKPVET 217


>sp|AROE_SACI3|SHIKIMATE dehydrogenase (NADP(+))|Saccharolobus islandicus (strain M.16.27)

Query: 1 VYPPIET 7
VY P+ET
Sbjct: 211 VYKPVET 217


>sp|AROE_SACI2|SHIKIMATE dehydrogenase (NADP(+))|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 VYPPIET 7
VY P+ET
Sbjct: 211 VYKPVET 217


>sp|AROE_SACI1|SHIKIMATE dehydrogenase (NADP(+))|Saccharolobus islandicus (strain Y.N.15.51

Query: 1 VYPPIET 7
VY P+ET
Sbjct: 211 VYKPVET 217


>sp|AROE_SACI7|SHIKIMATE dehydrogenase (NADP(+))|Saccharolobus islandicus (strain Y.G.57.14

Query: 1 VYPPIET 7
VY P+ET
Sbjct: 211 VYKPVET 217


>sp|LEMA_METJA|PROTEIN LemA|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YPPIETSE 9
YP ++TSE
Sbjct: 114 YPELKTSE 121




13|SequenceR|70|61|SPCKMVYPPI

>sp|AROB_PYRAB|3-DEHYDROQUINATE synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 PCKMVYPP 9
P K+ YPP
Sbjct: 278 PTKLPYPP 285


>sp|AGO_PYRFU|PROTEIN argonaute|Pyrococcus furiosus (strain ATCC 43587

Query: 1 SPCKMVYPP 9
SP K VY P
Sbjct: 184 SPLKTVYKP 192


>sp|SEPS_ARCFU|O-PHOSPHOSERINE--TRNA(CYS) ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 KMVYPPI 10
KMVYP I
Sbjct: 345 KMVYPQI 351


>sp|Y2003_METTM|UNCHARACTERIZED protein MTBMA_p00030|Methanothermobacter marburgensis (strain

Query: 3 CKMVYPP 9
CK +YPP
Sbjct: 90 CKYLYPP 96


>sp|GATB_SULAC|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Sulfolobus acidocaldarius (strain ATCC

Query: 2 PCKMVYP 8
P K+VYP
Sbjct: 127 PAKIVYP 133


>sp|GATB_SACS2|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Saccharolobus solfataricus (strain ATCC

Query: 2 PCKMVYP 8
P K+VYP
Sbjct: 126 PAKIVYP 132




14|SequenceR|75|66|SCLGNSPCKM

>sp|ASPD_METM7|L-ASPARTATE dehydrogenase|Methanococcus maripaludis (strain C7 /

Query: 1 SCLGNSPCK 9
+C+ N+PCK
Sbjct: 231 TCVENNPCK 239


>sp|ASPD_METVS|L-ASPARTATE dehydrogenase|Methanococcus vannielii (strain ATCC 35089

Query: 1 SCLGNSPCK 9
+C+ N+PCK
Sbjct: 231 TCVENNPCK 239


>sp|ASPD_METM6|L-ASPARTATE dehydrogenase|Methanococcus maripaludis (strain C6 /

Query: 1 SCLGNSPCK 9
+C+ N+PC+
Sbjct: 231 TCVENNPCR 239


>sp|ASPD_METMP|L-ASPARTATE dehydrogenase|Methanococcus maripaludis (strain DSM 14266

Query: 1 SCLGNSPCK 9
+C+ N+PC+
Sbjct: 231 TCVENNPCR 239


>sp|ASPD_METM5|L-ASPARTATE dehydrogenase|Methanococcus maripaludis (strain C5 /

Query: 1 SCLGNSPCK 9
+C+ N+PC+
Sbjct: 231 TCVENNPCR 239


>sp|SPCS_METMP|O-PHOSPHOSERYL-TRNA(SEC) selenium transferase|Methanococcus maripaludis (strain DSM 14266

Query: 3 LGNSPC 8
LGN PC
Sbjct: 209 LGNRPC 214




15|SequenceR|80|71|DAPLRSCLGN

>sp|PRIS_METS3|DNA primase small subunit PriS|Methanobrevibacter smithii (strain ATCC

Query: 1 DAPLRSC 7
D P+RSC
Sbjct: 99 DIPIRSC 105


>sp|PRIS_METTH|DNA primase small subunit PriS|Methanothermobacter thermautotrophicus

Query: 1 DAPLRSC 7
D P+RSC
Sbjct: 102 DLPVRSC 108


>sp|PURA2_METAC|ADENYLOSUCCINATE synthetase 2|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 PLRSCLG 9
PLR C+G
Sbjct: 339 PLRICVG 345


>sp|Y865_METJA|PUTATIVE methylthiotransferase MJ0865|Methanocaldococcus jannaschii (strain

Query: 5 RSCLGN 10
R CLGN
Sbjct: 175 RGCLGN 180


>sp|MCH_METHJ|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 DAPLRSCLG 9
D P SCLG
Sbjct: 83 DYPAISCLG 91


>sp|CCA_AERPE|CCA-ADDING enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 4 LRSCLGN 10
LRSCLG
Sbjct: 97 LRSCLGG 103


>sp|MCH_METLZ|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 DAPLRSCLGN 10
D P SCLG+
Sbjct: 83 DFPAISCLGS 92




16|SequenceR|85|76|TCDICDAPLR

>sp|SPSS2_METHJ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 TCDICDAPLR 10
TCD C P R
Sbjct: 106 TCDTCRKPFR 115


>sp|SPSS2_METB6|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanoregula boonei (strain DSM 21154

Query: 1 TCDICDAPLR 10
TCD C P R
Sbjct: 106 TCDACRKPFR 115


>sp|SPSS2_METAR|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanocella arvoryzae (strain DSM 22066

Query: 1 TCDICDAPLR 10
TCD C P R
Sbjct: 114 TCDYCRKPFR 123


>sp|NOB1_METJA|ENDORIBONUCLEASE Nob1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CDICDAPLR 10
C+IC +PL+
Sbjct: 174 CEICGSPLK 182


>sp|SPSS1_METBU|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 1|Methanococcoides burtonii (strain DSM 6242

Query: 1 TCDICDAPLR 10
TCD C P R
Sbjct: 112 TCDNCRKPFR 121


>sp|DNLJ_HALLT|DNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 TCDICDAPL 9
TC ICDAP+
Sbjct: 443 TCPICDAPV 451


>sp|SYP_HALWD|PROLINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 TCDICDAP 8
TC +CD P
Sbjct: 494 TCVVCDNP 501


>sp|SPSS_METMJ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 CDICDAPLR 10
CD C +P R
Sbjct: 46 CDNCRSPFR 54


>sp|Y328_METJA|UNCHARACTERIZED protein MJ0328|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CDICDAPLR 10
C +C++P R
Sbjct: 10 CKVCNSPHR 18


>sp|DNLJ_HALMA|DNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 TCDICDAPL 9
TC CD+P+
Sbjct: 425 TCPACDSPV 433


>sp|RAD50_SACS2|DNA double-strand break repair Rad50|Saccharolobus solfataricus (strain

Query: 1 TCDICDAPL 9
TC +C PL
Sbjct: 425 TCPVCGRPL 433


>sp|SPSS1_METHJ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 1|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 CDICDAPLR 10
CD C P R
Sbjct: 46 CDHCTKPFR 54


>sp|SPSS2_METLZ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 CDICDAPLR 10
CD C P R
Sbjct: 46 CDNCHKPFR 54


>sp|IF2B_THEPD|TRANSLATION initiation factor 2 subunit|Thermofilum pendens (strain DSM 2475

Query: 2 CDICDAP 8
C +C+AP
Sbjct: 108 CPVCEAP 114


>sp|SPSS1_METLZ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 1|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 CDICDAPLR 10
CD C P R
Sbjct: 46 CDNCRKPFR 54


>sp|TRM1_METB6|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanoregula boonei (strain

Query: 1 TCDICDAPLR 10
TC C PLR
Sbjct: 255 TCPFCGKPLR 264


>sp|DNLJ_NATPD|DNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 CDICDAPL 9
C +C++PL
Sbjct: 429 CPVCESPL 436


>sp|KAD_PYRFU|ADENYLATE kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 CDICDAPL 9
CD+C A L
Sbjct: 148 CDVCGAEL 155


>sp|SYP_HALLT|PROLINE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 TCDICD 6
TC ICD
Sbjct: 473 TCAICD 478


>sp|SYA_PYRFU|ALANINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 TCDICDAPL 9
TC +C P
Sbjct: 19 TCKVCGKPF 27


>sp|SYM_IGNH4|METHIONINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 TCDICDAP 8
TC C AP
Sbjct: 142 TCPYCGAP 149


>sp|SPSS_METTH|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 CDICDAPL 9
CD CD L
Sbjct: 46 CDYCDGRL 53


>sp|RNP4_HALSA|RIBONUCLEASE P protein component 4|Halobacterium salinarum (strain ATCC 700922

Query: 1 TCDICDAPL 9
TCD CDA L
Sbjct: 54 TCDDCDAVL 62


>sp|RNP4_HALS3|RIBONUCLEASE P protein component 4|Halobacterium salinarum (strain ATCC 29341

Query: 1 TCDICDAPL 9
TCD CDA L
Sbjct: 54 TCDDCDAVL 62


>sp|RL34_SULTO|LARGE ribosomal subunit protein eL34|Sulfurisphaera tokodaii (strain

Query: 2 CDICDAPLR 10
C IC PL+
Sbjct: 37 CAICKKPLQ 45


>sp|Y664_METJA|UNCHARACTERIZED protein MJ0664|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 TCDICDAPLR 10
TC C A LR
Sbjct: 265 TCPWCGAKLR 274


>sp|RLME_METMJ|RIBOSOMAL RNA large subunit methyltransferase|Methanoculleus marisnigri

Query: 1 TCDICDAPL 9
TCD + PL
Sbjct: 195 TCDDAEGPL 203


>sp|Y182_METKA|PUTATIVE ABC transporter ATP-binding protein|Methanopyrus kandleri (strain

Query: 1 TCDICDAPLR 10
TC +C LR
Sbjct: 9 TCAVCGLSLR 18


>sp|PUS10_IGNAA|TRNA pseudouridine synthase Pus10|Ignisphaera aggregans (strain DSM

Query: 1 TCDICD 6
TC ICD
Sbjct: 92 TCFICD 97


>sp|KAD_THEKO|ADENYLATE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 CDICDAPL 9
CD+C + L
Sbjct: 148 CDVCGSEL 155


>sp|KAD_PYRAB|ADENYLATE kinase|Pyrococcus abyssi (strain GE5 /

Query: 2 CDICDAPL 9
CDIC L
Sbjct: 148 CDICGGEL 155


>sp|Y2093_ARCFU|UNCHARACTERIZED protein AF_2093|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 TCDICDAPL 9
TC + D P+
Sbjct: 52 TCSLIDCPI 60


>sp|KAD_PYRHO|ADENYLATE kinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 CDICDAPL 9
CDIC L
Sbjct: 148 CDICGGDL 155


>sp|RNP4_METLZ|RIBONUCLEASE P protein component 4|Methanocorpusculum labreanum (strain ATCC

Query: 1 TCDICDAPLR 10
TC IC A R
Sbjct: 87 TCGICGAVTR 96




17|SequenceR|90|81|CSFNTTCDIC

>sp|MFNA_METLZ|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanocorpusculum labreanum

Query: 2 SFNTTCDI 9
SF+ TCDI
Sbjct: 121 SFDKTCDI 128


>sp|MCRAM_METJA|[METHYL coenzyme M reductase]-L-arginine

Query: 1 CSFNTTCDIC 10
C F CD C
Sbjct: 43 CQFTVGCDYC 52


>sp|ATGT_METMP|TRNA-GUANINE(15) transglycosylase|Methanococcus maripaludis (strain DSM 14266

Query: 2 SFNTTCDIC 10
SF TC +C
Sbjct: 277 SFPCTCKVC 285


>sp|ATGT_METM7|TRNA-GUANINE(15) transglycosylase|Methanococcus maripaludis (strain C7 /

Query: 2 SFNTTCDIC 10
SF TC +C
Sbjct: 277 SFPCTCKVC 285


>sp|ATGT_METM5|TRNA-GUANINE(15) transglycosylase|Methanococcus maripaludis (strain C5 /

Query: 2 SFNTTCDIC 10
SF TC +C
Sbjct: 277 SFPCTCKVC 285


>sp|LEU1_METJA|2-ISOPROPYLMALATE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CSFNTTCDIC 10
CS N +IC
Sbjct: 81 CSLNLDAEIC 90


>sp|TFE_THEPD|TRANSCRIPTION factor E|Thermofilum pendens (strain DSM 2475

Query: 4 NTTCDIC 10
N TC++C
Sbjct: 131 NYTCEVC 137


>sp|END3_METJA|ENDONUCLEASE III|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CSFNTTCDIC 10
CS + CD C
Sbjct: 184 CSSKSKCDKC 193


>sp|SYK_METBA|LYSINE--TRNA ligase|Methanosarcina barkeri

Query: 3 FNTTCDIC 10
FN CD C
Sbjct: 169 FNPRCDQC 176


>sp|ASNH2_METJA|PUTATIVE asparagine synthetase [glutamine-hydrolyzing] 2|Methanocaldococcus

Query: 3 FNTTCD 8
FNT CD
Sbjct: 489 FNTLCD 494


>sp|COFC_METBU|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 1 CSFNTTCDI 9
CSF + C+I
Sbjct: 141 CSFISHCEI 149


>sp|TRMY_METHJ|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanospirillum

Query: 4 NTTCDI 9
+TTCDI
Sbjct: 49 DTTCDI 54


>sp|RS11_METBU|SMALL ribosomal subunit protein uS11|Methanococcoides burtonii (strain

Query: 1 CSFNTT 6
CSFN T
Sbjct: 13 CSFNNT 18


>sp|Y003_METJA|UNCHARACTERIZED protein MJ0003|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 NTTCDI 9
+TTCDI
Sbjct: 105 STTCDI 110




18|SequenceR|95|86|PKGYTCSFNT

>sp|MFNA_ARCFU|PROBABLE L-aspartate decarboxylase|Archaeoglobus fulgidus (strain ATCC

Query: 1 PKGYTCSFNT 10
P GY CS T
Sbjct: 73 PAGYICSGGT 82


>sp|RADB_METBU|DNA repair and recombination protein|Methanococcoides burtonii (strain

Query: 1 PKGYTCSF 8
P+G TC F
Sbjct: 210 PEGTTCEF 217


>sp|MTAD_PYRAB|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase|Pyrococcus abyssi (strain GE5 /

Query: 4 YTCSFN 9
YTCSF+
Sbjct: 187 YTCSFD 192


>sp|APGM_PYRFU|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PKGYTCSFNT 10
PKG T +NT
Sbjct: 268 PKGATGEYNT 277


>sp|CHEB_METBF|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Methanosarcina barkeri

Query: 1 PKGYTCSFN 9
P G+T SF+
Sbjct: 210 PAGFTASFS 218


>sp|Y414_METJA|UNCHARACTERIZED protein MJ0414|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GYTCSFNT 10
GY C F T
Sbjct: 122 GYICPFTT 129


>sp|AMTAB_METJA|PROBABLE threonylcarbamoyladenosine tRNA

Query: 2 KGYTCSFNT 10
+GY C NT
Sbjct: 17 EGYGCVLNT 25


>sp|RL24E_AERPE|LARGE ribosomal subunit protein eL24|Aeropyrum pernix (strain ATCC

Query: 1 PKGYTCSF 8
PK TCSF
Sbjct: 2 PKSRTCSF 9


>sp|RS7_PYRIL|SMALL ribosomal subunit protein uS7|Pyrobaculum islandicum (strain DSM

Query: 5 TCSFN 9
TCSFN
Sbjct: 180 TCSFN 184


>sp|HMGCS_METST|HYDROXYMETHYLGLUTARYL-COA synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 YTCSFNT 10
+TCSF T
Sbjct: 174 HTCSFTT 180




19|SequenceR|100|91|CDFTVPKGYT

>sp|PUR2_METJA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 CDFTVPKGY 9
C + VPKGY
Sbjct: 341 CKYVVPKGY 349


>sp|RPO1C_THEVO|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermoplasma volcanium (strain ATCC

Query: 2 DFTVPKGYT 10
DF VPKG T
Sbjct: 25 DFEVPKGIT 33


>sp|IF2B_METST|TRANSLATION initiation factor 2 subunit|Methanosphaera stadtmanae (strain

Query: 3 FTVPKGYT 10
F VPKGY+
Sbjct: 32 FKVPKGYS 39


>sp|AROB_SULTO|3-DEHYDROQUINATE synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 DFTVPKGY 9
+FTVP GY
Sbjct: 248 NFTVPHGY 255


>sp|PUR2_METVS|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 341 CKYVVPNGY 349


>sp|PUR2_METMP|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 341 CKYVVPNGY 349


>sp|PUR2_METM7|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C7 /

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 341 CKYVVPNGY 349


>sp|PUR2_METM6|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C6 /

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 341 CKYVVPNGY 349


>sp|PUR2_METM5|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C5 /

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 341 CKYVVPNGY 349


>sp|PUR2_METKA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 CDFTVPKGY 9
C + VP+GY
Sbjct: 341 CKYVVPEGY 349


>sp|PUR2_METTH|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 CDFTVPKGY 9
C + VP+GY
Sbjct: 333 CKYLVPEGY 341


>sp|PUR2_METMJ|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 CDFTVPKGY 9
C + VP+GY
Sbjct: 332 CKYLVPEGY 340


>sp|PUR2_METB6|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanoregula boonei (strain DSM 21154

Query: 1 CDFTVPKGY 9
C + VP+GY
Sbjct: 330 CKYLVPEGY 338


>sp|PUR2_METBU|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 333 CKYAVPAGY 341


>sp|PUR2_METBF|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 334 CKYAVPAGY 342


>sp|PUR2_METAR|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 334 CKYVVPAGY 342


>sp|PUR2_METAC|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 336 CKYAVPAGY 344


>sp|PUR2_METMA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 336 CKYAVPAGY 344


>sp|PUR2_METS3|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 CDFTVPKGY 9
C + VP GY
Sbjct: 333 CKYIVPDGY 341


>sp|TRUD_METBU|PROBABLE tRNA pseudouridine synthase D|Methanococcoides burtonii (strain DSM

Query: 2 DFTVPKG 8
DF++PKG
Sbjct: 414 DFSLPKG 420


>sp|FLAB5_THEKO|FLAGELLIN B5|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 DFTVPKGYT 10
DFT P YT
Sbjct: 260 DFTTPSTYT 268


>sp|HIS6_METS3|IMIDAZOLE glycerol phosphate synthase subunit|Methanobrevibacter smithii

Query: 1 CDFTVPKG 8
CD VP+G
Sbjct: 12 CDLQVPEG 19


>sp|FLAB5_PYRHO|FLAGELLIN B5|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 DFTVPKGYT 10
DFT P YT
Sbjct: 240 DFTTPSTYT 248


>sp|HIS6_METST|IMIDAZOLE glycerol phosphate synthase subunit|Methanosphaera stadtmanae

Query: 1 CDFTVPKG 8
CD VP+G
Sbjct: 12 CDLQVPEG 19


>sp|THYX_PYRAE|FLAVIN-DEPENDENT thymidylate synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 FTVPKGY 9
F VPKG+
Sbjct: 106 FVVPKGF 112


>sp|CYAS_METPS|CYSTEATE synthase|Methanocella paludicola (strain DSM 17711

Query: 1 CDFTVPKGYT 10
C T+P YT
Sbjct: 11 CRHTIPDNYT 20


>sp|SYC_METBF|CYSTEINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 DFTVPKGYT 10
DF +PK T
Sbjct: 366 DFNIPKALT 374


>sp|GATD_PYRFU|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrococcus furiosus (strain ATCC 43587

Query: 2 DFTVPKGY 9
DF V KGY
Sbjct: 322 DFLVDKGY 329


>sp|GATD_PYRAB|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrococcus abyssi (strain GE5 /

Query: 2 DFTVPKGY 9
DF V KGY
Sbjct: 322 DFLVDKGY 329


>sp|HIS6_METTH|IMIDAZOLE glycerol phosphate synthase subunit|Methanothermobacter

Query: 1 CDFTVPKG 8
CD VP G
Sbjct: 12 CDLQVPNG 19


>sp|FLAB3_THEKO|FLAGELLIN B3|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 CDFTVPKGYT 10
DFT P YT
Sbjct: 242 IDFTTPSTYT 251


>sp|PGK_METBR|PHOSPHOGLYCERATE kinase|Methanobacterium bryantii

Query: 2 DFTVPKGY 9
DF + KGY
Sbjct: 250 DFIINKGY 257


>sp|METK_METST|S-ADENOSYLMETHIONINE synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 DFTVPKGYT 10
+FT+P G T
Sbjct: 95 EFTLPSGET 103


>sp|RL3_THESM|LARGE ribosomal subunit protein uL3|Thermococcus sibiricus (strain DSM

Query: 4 TVPKGYT 10
T+PK YT
Sbjct: 129 TLPKNYT 135


>sp|RL3_PYRFU|LARGE ribosomal subunit protein uL3|Pyrococcus furiosus (strain ATCC

Query: 4 TVPKGYT 10
T+PK YT
Sbjct: 134 TLPKNYT 140


>sp|RL3_PYRAB|LARGE ribosomal subunit protein uL3|Pyrococcus abyssi (strain GE5 /

Query: 4 TVPKGYT 10
T+PK YT
Sbjct: 131 TLPKNYT 137


>sp|MCH_METLZ|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 CDFTVPKGY 9
C +VP GY
Sbjct: 38 CGVSVPGGY 46


>sp|MCH_METHJ|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 CDFTVPKGYT 10
C +VP GY
Sbjct: 38 CGVSVPGGYA 47


>sp|DAPB_HALMA|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Haloarcula marismortui (strain ATCC 43049

Query: 3 FTVPKG 8
F VPKG
Sbjct: 64 FAVPKG 69


>sp|MOBDB_HALVD|PUTATIVE ABC transporter molybdenum-binding protein|Haloferax volcanii

Query: 2 DFTVPKGYT 10
DF P G+T
Sbjct: 281 DFLEPSGFT 289




20|SequenceR|105|96|SPKVACDFTV

>sp|Y951_METJA|UNCHARACTERIZED protein MJ0951|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 KVACDFT 9
K+ CDFT
Sbjct: 51 KIVCDFT 57


>sp|TRI_THEAC|TRICORN protease|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 SPKVACDFTV 10
S ++ACDF +
Sbjct: 762 SGRIACDFKL 771


>sp|PYRF_THEVO|OROTIDINE 5'-phosphate decarboxylase|Thermoplasma volcanium (strain ATCC

Query: 3 KVACDFTV 10
KV CDF V
Sbjct: 54 KVICDFKV 61


>sp|MFNC_METJA|(5-FORMYLFURAN-3-YL)METHYL phosphate transaminase|Methanocaldococcus jannaschii (strain ATCC

Query: 4 VACDFTV 10
V CDFTV
Sbjct: 138 VFCDFTV 144


>sp|TRI_THEVO|TRICORN protease|Thermoplasma volcanium (strain ATCC 51530

Query: 3 KVACDF 8
++ACDF
Sbjct: 724 RIACDF 729


>sp|Y786_METJA|UNCHARACTERIZED protein MJ0786|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 KVACDFTV 10
KV CDF +
Sbjct: 35 KVDCDFLI 42


>sp|EF1A_METTH|ELONGATION factor 1-alpha|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 PKVACDFT 9
PKVA +FT
Sbjct: 302 PKVAKEFT 309


>sp|TRM1_METKA|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanopyrus kandleri

Query: 2 PKVACD 7
PK+ CD
Sbjct: 50 PKIVCD 55


>sp|ATGT_METST|TRNA-GUANINE(15) transglycosylase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 SPKVACDFTV 10
S +V C++TV
Sbjct: 276 SCRVCCEYTV 285




21|SequenceR|110|101|DVCTVSPKVA

>sp|FLAH_METJA|ARCHAEAL flagellar ATP-binding protein FlaH|Methanocaldococcus jannaschii

Query: 2 VCTVSPK 8
+CTV+PK
Sbjct: 160 ICTVNPK 166


>sp|RLME_NITMS|RIBOSOMAL RNA large subunit methyltransferase|Nitrosopumilus maritimus

Query: 2 VCTVSPKVA 10
+C +SPKV+
Sbjct: 110 ICDLSPKVS 118


>sp|FRHB_METVO|COENZYME F420 hydrogenase subunit beta|Methanococcus voltae

Query: 1 DVCTVSPKVA 10
D C +PKVA
Sbjct: 53 DGCNAAPKVA 62


>sp|RLME_METHJ|RIBOSOMAL RNA large subunit methyltransferase|Methanospirillum hungatei JF-1

Query: 2 VCTVSPKVA 10
VC SPK++
Sbjct: 106 VCDASPKLS 114


>sp|HMDY_METJA|H(2)-FORMING methylenetetrahydromethanopterin dehydrogenase-related protein

Query: 1 DVCTVSPKV 9
+ CTVSP V
Sbjct: 125 NTCTVSPVV 133


>sp|AROD_METBU|3-DEHYDROQUINATE dehydratase|Methanococcoides burtonii (strain DSM 6242

Query: 1 DVCTVS 6
DVCT+S
Sbjct: 182 DVCTIS 187




22|SequenceR|115|106|SKFDQDVCTV

>sp|Y818_PYRAE|MEMO1 family protein PAE0818|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 SKFDQDVCTV 10
SKFD +C +
Sbjct: 226 SKFDISICGI 235


>sp|Y1105_PYRIL|MEMO1 family protein Pisl_1105|Pyrobaculum islandicum (strain DSM 4184

Query: 1 SKFDQDVCTV 10
SKFD +C +
Sbjct: 226 SKFDISICGI 235


>sp|TRPD_METBU|ANTHRANILATE phosphoribosyltransferase|Methanococcoides burtonii (strain DSM

Query: 3 FDQDVCTV 10
FD+D+C +
Sbjct: 194 FDKDLCNL 201


>sp|Y062_PYRAR|MEMO1 family protein Pars_0062|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 SKFDQDVC 8
SKFD +C
Sbjct: 226 SKFDISIC 233




23|SequenceR|120|111|IFNKQSKFDQ

>sp|HEM1_METMA|GLUTAMYL-TRNA reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 KQSKFDQ 10
KQ+KFDQ
Sbjct: 422 KQAKFDQ 428


>sp|SYL_PYRAE|LEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 IFNKQSKFDQ 10
++N +S FDQ
Sbjct: 743 LYNAKSVFDQ 752


>sp|CS2H_ACIS1|CARBON disulfide hydrolase|Acidianus sp. (strain A1-3)

Query: 1 IFNKQSKFDQ 10
I+N+ SKF+
Sbjct: 189 IYNETSKFEH 198


>sp|Y1147_METJA|UNCHARACTERIZED protein MJ1147|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 IFNKQSKF 8
IFNK+S F
Sbjct: 161 IFNKESHF 168




24|SequenceR|125|116|CTMNIIFNKQ

>sp|Y1654_ARCFU|UNCHARACTERIZED protein AF_1654|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 CTMNIIF 7
CT++IIF
Sbjct: 235 CTVSIIF 241




25|SequenceR|130|121|QWCFRCTMNI

>sp|SYI_ARCFU|ISOLEUCINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 WCFRC 6
WC RC
Sbjct: 176 WCHRC 180


>sp|SYI_SULAC|ISOLEUCINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 QWCFRC 6
WC RC
Sbjct: 179 HWCSRC 184


>sp|VAPC1_THEAC|RIBONUCLEASE VapC1|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 WCFRCT 7
W +RCT
Sbjct: 155 WIYRCT 160


>sp|SYV_AERPE|VALINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 QWCFRCTMNI 10
+WC RC +
Sbjct: 184 RWCPRCKTTL 193


>sp|SYV_NATPD|VALINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 174 WCPRCETAI 182


>sp|SYV_METKA|VALINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 190 WCPRCETAI 198


>sp|SYV_METJA|VALINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 172 WCPRCQTAI 180


>sp|SYV_HALSA|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 174 WCPRCETAI 182


>sp|SYV_HALS3|VALINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 174 WCPRCETAI 182


>sp|SYI_METMA|ISOLEUCINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 181 WCPRCETAI 189


>sp|SYI_METBF|ISOLEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 181 WCPRCETAI 189


>sp|SYI_METAR|ISOLEUCINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 181 WCPRCETAI 189


>sp|SYI_METAC|ISOLEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 181 WCPRCETAI 189


>sp|ARDF_PYRFU|ARCHAEAL ribosome dimerization factor|Pyrococcus furiosus (strain ATCC 43587

Query: 1 QWCFRCTMN 9
++ +RCT+N
Sbjct: 140 RFVYRCTLN 148


>sp|SYI_METMJ|ISOLEUCINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 180 WCPRCETAI 188


>sp|SYV_METMP|VALINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 172 WCPRCETAI 180


>sp|SYI_METMP|ISOLEUCINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 WCFRCTMNI 10
WC RC ++
Sbjct: 180 WCPRCETSL 188


>sp|SYI_META3|ISOLEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 WCFRCTMNI 10
WC RC ++
Sbjct: 181 WCPRCETSL 189


>sp|SYI_METTP|ISOLEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 181 WCPRCQTAI 189


>sp|SYI_THEKO|ISOLEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 QWCFRC 6
WC RC
Sbjct: 182 HWCPRC 187


>sp|SYI_SULTO|ISOLEUCINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 QWCFRC 6
WC RC
Sbjct: 179 HWCPRC 184


>sp|SYI_SACI4|ISOLEUCINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 QWCFRC 6
WC RC
Sbjct: 182 HWCPRC 187


>sp|SYI_SACI3|ISOLEUCINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 QWCFRC 6
WC RC
Sbjct: 182 HWCPRC 187


>sp|SYI_PYRHO|ISOLEUCINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 QWCFRC 6
WC RC
Sbjct: 182 HWCPRC 187


>sp|SYI_PYRFU|ISOLEUCINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 QWCFRC 6
WC RC
Sbjct: 182 HWCPRC 187


>sp|SYI_PYRAB|ISOLEUCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 QWCFRC 6
WC RC
Sbjct: 182 HWCPRC 187


>sp|SYI_AERPE|ISOLEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 QWCFRC 6
WC RC
Sbjct: 187 HWCPRC 192


>sp|SYI_METHJ|ISOLEUCINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 180 WCPRCETAI 188


>sp|SYI_METBU|ISOLEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 181 WCPRCETAI 189


>sp|SYV_THEKO|VALINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 WCFRCTMNI 10
WC RC ++
Sbjct: 170 WCPRCRTSL 178


>sp|SYV_PYRFU|VALINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 WCFRCTMNI 10
WC RC ++
Sbjct: 170 WCPRCRTSL 178


>sp|SYV_METBF|VALINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 176 WCPRCETAI 184


>sp|SYV_METTH|VALINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 175 WCPRCETAI 183


>sp|SYI_SACS2|ISOLEUCINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 QWCFRC 6
WC RC
Sbjct: 119 HWCPRC 124


>sp|SYV_METTP|VALINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 173 WCPRCATAI 181


>sp|SYV_PYRAE|VALINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 WCFRC 6
WC RC
Sbjct: 174 WCPRC 178


>sp|SYV_METAC|VALINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 176 WCPRCETAI 184


>sp|SYI_METKA|ISOLEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 WCFRC 6
WC RC
Sbjct: 185 WCPRC 189


>sp|SYI_METJA|ISOLEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WCFRC 6
WC RC
Sbjct: 180 WCPRC 184


>sp|SYI_METB6|ISOLEUCINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 180 WCPRCETAI 188


>sp|SYV_METMA|VALINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 176 WCPRCETAI 184


>sp|SYI_METTH|ISOLEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 WCFRC 6
WC RC
Sbjct: 183 WCPRC 187


>sp|SYI_METTM|ISOLEUCINE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 2 WCFRC 6
WC RC
Sbjct: 183 WCPRC 187


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 WCFRCTMNI 10
WC RC I
Sbjct: 180 WCPRCGTAI 188


>sp|FDHB_METFO|F420-DEPENDENT formate dehydrogenase subunit beta|Methanobacterium formicicum

Query: 3 CFRCTMNI 10
C RC +NI
Sbjct: 191 CRRCEVNI 198




26|SequenceR|135|126|DTEPLQWCFR

>sp|CBIM1_METPE|PUTATIVE cobalt transport protein CbiM|Methanosphaerula palustris (strain

Query: 4 PLQWCF 9
PLQWC
Sbjct: 9 PLQWCL 14


>sp|SYL2_SACS2|LEUCINE--TRNA ligase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 DTEPLQWC 8
DT P+ WC
Sbjct: 170 DTHPVGWC 177


>sp|SYH_METPE|HISTIDINE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 3 EPLQWCF 9
+PL+WC+
Sbjct: 95 KPLRWCY 101


>sp|SYH_METMJ|HISTIDINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 EPLQWCF 9
+PL+WC+
Sbjct: 95 KPLRWCY 101


>sp|SYH_METB6|HISTIDINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 3 EPLQWCF 9
+PL+WC+
Sbjct: 95 KPLRWCY 101


>sp|SYL2_SULTO|LEUCINE--TRNA ligase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 DTEPLQWC 8
DT P+ WC
Sbjct: 170 DTHPVGWC 177


>sp|SYL2_SULAC|LEUCINE--TRNA ligase 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 DTEPLQWC 8
DT P+ WC
Sbjct: 169 DTHPVGWC 176


>sp|SYL2_METS5|LEUCINE--TRNA ligase 2|Metallosphaera sedula (strain ATCC 51363

Query: 1 DTEPLQWC 8
DT P+ WC
Sbjct: 181 DTHPVGWC 188


>sp|Y963_METKA|MEMO1 family protein MK0963|Methanopyrus kandleri (strain AV19 /

Query: 5 LQWCFR 10
++WCFR
Sbjct: 23 IEWCFR 28


>sp|RS15_METMA|SMALL ribosomal subunit protein uS15|Methanosarcina mazei (strain ATCC

Query: 2 TEPLQWC 8
TEP +WC
Sbjct: 20 TEPPEWC 26


>sp|RS15_METBF|SMALL ribosomal subunit protein uS15|Methanosarcina barkeri (strain

Query: 2 TEPLQWC 8
TEP +WC
Sbjct: 20 TEPPEWC 26


>sp|HEM11_PYRCJ|GLUTAMYL-TRNA reductase 1|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 TEPLQWCFR 10
+E ++WC R
Sbjct: 214 SENVEWCLR 222


>sp|DPOL_THEAG|DNA polymerase|Thermococcus aggregans

Query: 2 TEPLQWCF 9
+EP++W F
Sbjct: 1223 SEPVRWAF 1230


>sp|RL10_PICTO|LARGE ribosomal subunit protein uL10|Picrophilus torridus (strain

Query: 2 TEPLQW 7
TEP QW
Sbjct: 2 TEPAQW 7


>sp|RS15_METAC|SMALL ribosomal subunit protein uS15|Methanosarcina acetivorans (strain

Query: 2 TEPLQWC 8
T+P +WC
Sbjct: 20 TDPPEWC 26


>sp|COBQ_THEON|PROBABLE cobyric acid synthase|Thermococcus onnurineus (strain NA1)

Query: 1 DTEPLQW 7
D EPL W
Sbjct: 263 DFEPLHW 269


>sp|COBQ_THEKO|PROBABLE cobyric acid synthase|Thermococcus kodakarensis (strain ATCC

Query: 1 DTEPLQW 7
D EPL W
Sbjct: 263 DFEPLHW 269


>sp|COBQ_THEGJ|PROBABLE cobyric acid synthase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 DTEPLQW 7
D EPL W
Sbjct: 263 DFEPLHW 269


>sp|COBQ_PYRFU|PROBABLE cobyric acid synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 DTEPLQW 7
D EPL W
Sbjct: 263 DFEPLHW 269


>sp|DPOL_THELI|DNA polymerase|Thermococcus litoralis

Query: 3 EPLQWCF 9
EP++W F
Sbjct: 864 EPVRWSF 870


>sp|Y105_METJA|UNCHARACTERIZED protein MJ0105|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 TEPLQWCFR 10
T PL W F+
Sbjct: 4 TRPLSWDFQ 12


>sp|Y249_ARCFU|UNCHARACTERIZED protein AF_0249|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 DTEPLQWCFR 10
+ E ++WC R
Sbjct: 74 EEERVRWCLR 83


>sp|Y045_METTH|MEMO1 family protein MTH_45|Methanothermobacter thermautotrophicus

Query: 5 LQWCF 9
++WCF
Sbjct: 23 IEWCF 27




27|SequenceR|140|131|NTCEYDTEPL

>sp|NDK_METMP|NUCLEOSIDE diphosphate kinase|Methanococcus maripaludis (strain DSM 14266

Query: 1 NTCEYDTEP 9
NTC D EP
Sbjct: 90 NTCPCDAEP 98


>sp|TOP3_SACS2|DNA topoisomerase 3|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 NTCEYDTE 8
N C+YD E
Sbjct: 109 NACDYDIE 116


>sp|TOP1_AERPE|DNA topoisomerase 1|Aeropyrum pernix (strain ATCC 700893

Query: 1 NTCEYDTE 8
N C+YD E
Sbjct: 100 NACDYDIE 107


>sp|TOP1_PYRAB|DNA topoisomerase 1|Pyrococcus abyssi (strain GE5 /

Query: 3 CEYDTE 8
C+YDTE
Sbjct: 106 CDYDTE 111


>sp|TOP1_PYRHO|DNA topoisomerase 1|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 CEYDTE 8
C+YDTE
Sbjct: 106 CDYDTE 111


>sp|TOP1_PYRFU|DNA topoisomerase 1|Pyrococcus furiosus (strain ATCC 43587

Query: 3 CEYDTE 8
C+YDTE
Sbjct: 106 CDYDTE 111


>sp|AMPPA_METMA|AMP phosphorylase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 NTCEYDTEPL 10
+T E+DT P+
Sbjct: 151 DTIEFDTHPI 160


>sp|AMPPA_METBF|AMP phosphorylase|Methanosarcina barkeri (strain Fusaro /

Query: 1 NTCEYDTEPL 10
+T E+DT P+
Sbjct: 150 DTIEFDTHPI 159


>sp|PRIL_METAR|DNA primase large subunit PriL|Methanocella arvoryzae (strain DSM 22066

Query: 3 CEYDTEPL 10
CEY T PL
Sbjct: 314 CEYVTHPL 321


>sp|AMPPA_METAC|AMP phosphorylase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 NTCEYDTEPL 10
+T E+DT P+
Sbjct: 150 DTIEFDTHPV 159


>sp|GCH1_PYRNV|GTP cyclohydrolase 1|Pyrobaculum neutrophilum (strain DSM 2338

Query: 4 EYDTEP 9
EYD EP
Sbjct: 62 EYDAEP 67


>sp|MAAL_HALMA|METHYLASPARTATE ammonia-lyase|Haloarcula marismortui (strain ATCC 43049

Query: 5 YDTEP 9
YDTEP
Sbjct: 161 YDTEP 165


>sp|RL24E_ARCFU|LARGE ribosomal subunit protein eL24|Archaeoglobus fulgidus (strain

Query: 3 CEYDTEP 9
C YD EP
Sbjct: 9 CGYDIEP 15




28|SequenceR|145|136|MCSTSNTCEY

>sp|CHED1_METMA|PROBABLE chemoreceptor glutamine deamidase CheD|Methanosarcina mazei

Query: 2 CSTSNTCEY 10
CS S+TC +
Sbjct: 29 CSLSDTCPF 37


>sp|CHED2_METAC|PROBABLE chemoreceptor glutamine deamidase CheD|Methanosarcina acetivorans

Query: 2 CSTSNTCEY 10
CS S TC +
Sbjct: 29 CSLSKTCSF 37


>sp|ILVC_METTP|KETOL-ACID reductoisomerase (NADP(+))|Methanothrix thermoacetophila (strain

Query: 3 STSNTCEY 10
S SNT EY
Sbjct: 250 SVSNTAEY 257


>sp|ILVC_METMA|KETOL-ACID reductoisomerase (NADP(+))|Methanosarcina mazei (strain ATCC

Query: 3 STSNTCEY 10
S SNT EY
Sbjct: 250 SVSNTAEY 257


>sp|ILVC_METBU|KETOL-ACID reductoisomerase (NADP(+))|Methanococcoides burtonii (strain DSM

Query: 3 STSNTCEY 10
S SNT EY
Sbjct: 250 SVSNTAEY 257


>sp|ILVC_METBF|KETOL-ACID reductoisomerase (NADP(+))|Methanosarcina barkeri (strain Fusaro /

Query: 3 STSNTCEY 10
S SNT EY
Sbjct: 250 SVSNTAEY 257


>sp|ILVC_METAC|KETOL-ACID reductoisomerase (NADP(+))|Methanosarcina acetivorans (strain ATCC

Query: 3 STSNTCEY 10
S SNT EY
Sbjct: 250 SVSNTAEY 257


>sp|ARLY_METMJ|ARGININOSUCCINATE lyase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 MCSTSNTCE 9
M STS CE
Sbjct: 248 MTSTSRLCE 256


>sp|RGYR1_SULTO|REVERSE gyrase 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 SNTCEY 10
SNTC Y
Sbjct: 669 SNTCPY 674


>sp|MVK_METJA|MEVALONATE kinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MCSTSNTCEY 10
+C+ NT +Y
Sbjct: 77 LCAIKNTLDY 86


>sp|THII_METMA|PROBABLE tRNA sulfurtransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 MCSTSNTC 8
MC NTC
Sbjct: 274 MCDRKNTC 281




29|SequenceR|150|141|PCSVTMCSTS

>sp|ATGT_METJA|TRNA-GUANINE(15) transglycosylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PCSVTMCST 9
PCS +CS+
Sbjct: 280 PCSCPVCSS 288


>sp|ATGT_KORCO|TRNA-GUANINE(15) transglycosylase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 PCSVTMCST 9
PCS +CS+
Sbjct: 277 PCSCPVCSS 285


>sp|THII_THEAC|TRNA sulfurtransferase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PCSVTMCSTS 10
PC + CS S
Sbjct: 194 PCDILFCSLS 203


>sp|ATGT_SULAC|TRNA-GUANINE(15) transglycosylase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 274 PCSCPICS 281


>sp|ATGT_SACS2|TRNA-GUANINE(15) transglycosylase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 277 PCSCPICS 284


>sp|ATGT_METVS|TRNA-GUANINE(15) transglycosylase|Methanococcus vannielii (strain ATCC 35089

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 279 PCSCKVCS 286


>sp|ATGT_THEON|TRNA-GUANINE(15) transglycosylase|Thermococcus onnurineus (strain NA1)

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 274 PCSCPVCS 281


>sp|ATGT_THEKO|TRNA-GUANINE(15) transglycosylase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 274 PCSCPVCS 281


>sp|ATGT_PYRHO|TRNA-GUANINE(15) transglycosylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 278 PCSCPVCS 285


>sp|ATGT_PYRAB|TRNA-GUANINE(15) transglycosylase|Pyrococcus abyssi (strain GE5 /

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 278 PCSCPVCS 285


>sp|ATGT_METMA|TRNA-GUANINE(15) transglycosylase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 275 PCSCPVCS 282


>sp|ATGT_METBF|TRNA-GUANINE(15) transglycosylase|Methanosarcina barkeri (strain Fusaro /

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 275 PCSCPVCS 282


>sp|ATGT_METAC|TRNA-GUANINE(15) transglycosylase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 275 PCSCPVCS 282


>sp|ATGT_AERPE|TRNA-GUANINE(15) transglycosylase|Aeropyrum pernix (strain ATCC 700893

Query: 1 PCSVTMCS 8
PCS +CS
Sbjct: 271 PCSCPVCS 278


>sp|ATGT_METTH|TRNA-GUANINE(15) transglycosylase|Methanothermobacter thermautotrophicus (strain

Query: 1 PCSVTMCS 8
PCS ++C+
Sbjct: 275 PCSCSVCT 282


>sp|AMPPA_METTP|AMP phosphorylase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 CSVTMCS 8
C+V MCS
Sbjct: 477 CAVKMCS 483


>sp|FTR_METJA|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 CSVTMC 7
CSV MC
Sbjct: 45 CSVIMC 50


>sp|THII_THEVO|TRNA sulfurtransferase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 PCSVTMCS 8
PC + CS
Sbjct: 194 PCDIFFCS 201


>sp|Y1373_METJA|UNCHARACTERIZED protein MJ1373|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CSVTMC 7
CS+T+C
Sbjct: 16 CSITLC 21




30|SequenceR|155|146|PYRQRPCSVT

>sp|KPTA_THEAC|PROBABLE RNA 2'-phosphotransferase|Thermoplasma acidophilum (strain ATCC

Query: 1 PYRQRPCSV 9
PYR R C V
Sbjct: 10 PYRGRECPV 18


>sp|KPTA_THEVO|PROBABLE RNA 2'-phosphotransferase|Thermoplasma volcanium (strain ATCC

Query: 1 PYRQRPCSV 9
PYR + C V
Sbjct: 10 PYRGKECPV 18




31|SequenceR|160|151|VTCNAPYRQR

>sp|KPTA_THEAC|PROBABLE RNA 2'-phosphotransferase|Thermoplasma acidophilum (strain ATCC

Query: 2 TCNAPYRQR 10
TC+ PYR R
Sbjct: 6 TCHGPYRGR 14


>sp|DP2L_METTP|DNA polymerase II large subunit|Methanothrix thermoacetophila (strain DSM

Query: 1 VTCNAPYRQ 9
V CNA YR+
Sbjct: 1029 VKCNAKYRR 1037


>sp|ENGB_META3|PROBABLE GTP-binding protein EngB|Methanococcus aeolicus (strain ATCC

Query: 3 CNAPYRQ 9
C AP+RQ
Sbjct: 183 CPAPWRQ 189


>sp|DP2L_THEVO|DNA polymerase II large subunit|Thermoplasma volcanium (strain ATCC 51530

Query: 3 CNAPYRQ 9
CNA YR+
Sbjct: 1005 CNAKYRR 1011


>sp|DP2L_PICTO|DNA polymerase II large subunit|Picrophilus torridus (strain ATCC 700027

Query: 3 CNAPYRQ 9
CNA YR+
Sbjct: 998 CNAKYRR 1004


>sp|DP2L_THEAC|DNA polymerase II large subunit|Thermoplasma acidophilum (strain ATCC

Query: 3 CNAPYRQ 9
CNA YR+
Sbjct: 1000 CNAKYRR 1006


>sp|Y328_METJA|UNCHARACTERIZED protein MJ0328|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 CNAPYR 8
CN+P+R
Sbjct: 13 CNSPHR 18


>sp|RPO3_METJA|DNA-DIRECTED RNA polymerase subunit Rpo3|Methanocaldococcus jannaschii (strain

Query: 3 CNAPYRQ 9
CNA Y+Q
Sbjct: 140 CNAVYKQ 146


>sp|DP2L_PYRFU|DNA polymerase II large subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 1 VTCNAPYRQ 9
V CN YR+
Sbjct: 1122 VKCNTKYRR 1130


>sp|DP2L_METMJ|DNA polymerase II large subunit|Methanoculleus marisnigri (strain ATCC

Query: 1 VTCNAPYRQ 9
+ CNA YR+
Sbjct: 1205 MKCNAKYRR 1213


>sp|SYM_NATPD|METHIONINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 13 VTCGLPY 19


>sp|SYM_METPE|METHIONINE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 8 VTCGLPY 14


>sp|SYM_METMA|METHIONINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 15 VTCGLPY 21


>sp|SYM_METBU|METHIONINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 12 VTCGLPY 18


>sp|SYM_METBF|METHIONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 11 VTCGLPY 17


>sp|SYM_METAC|METHIONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 15 VTCGLPY 21


>sp|SYM_HALWD|METHIONINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 31 VTCGLPY 37


>sp|SYM_HALSA|METHIONINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 14 VTCGLPY 20


>sp|SYM_HALMA|METHIONINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 14 VTCGLPY 20


>sp|DP2L_THEKO|DNA polymerase II large subunit|Thermococcus kodakarensis (strain ATCC

Query: 1 VTCNAPYRQ 9
V CN YR+
Sbjct: 1606 VKCNTKYRR 1614


>sp|SYM_METAR|METHIONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 18 VTCGLPY 24


>sp|SYM_ARCFU|METHIONINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 4 VTCGLPY 10


>sp|SYM_METMJ|METHIONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 8 VTCGLPY 14


>sp|SYM_METHJ|METHIONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 8 VTCGLPY 14


>sp|SYM_METLZ|METHIONINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 8 VTCGLPY 14


>sp|SYM_METTP|METHIONINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 10 VTCGLPY 16


>sp|SYM_METB6|METHIONINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 VTCNAPY 7
VTC PY
Sbjct: 8 VTCGLPY 14




32|SequenceR|165|156|HVHDRVTCNA

>sp|G6PI_HALSA|PROBABLE glucose-6-phosphate isomerase|Halobacterium salinarum (strain

Query: 1 HVHDRVT 7
H HDR+T
Sbjct: 31 HAHDRIT 37


>sp|TRF2_THEAC|TRICORN protease-interacting factor F2|Thermoplasma acidophilum (strain

Query: 4 DRVTCNA 10
D+VTCN
Sbjct: 46 DKVTCNG 52


>sp|THI4_METMA|THIAMINE thiazole synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 HDRVTCN 9
HD V CN
Sbjct: 171 HDAVVCN 177


>sp|DP2L_THEKO|DNA polymerase II large subunit|Thermococcus kodakarensis (strain ATCC

Query: 1 HVHDRV 6
H+HDR+
Sbjct: 1108 HLHDRI 1113


>sp|ASSY_THEVO|ARGININOSUCCINATE synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 HVHDRVT 7
HV DR+T
Sbjct: 251 HVEDRIT 257


>sp|CCA_THEVO|CCA-ADDING enzyme|Thermoplasma volcanium (strain ATCC 51530

Query: 3 HDRVTC 8
HDR TC
Sbjct: 266 HDRGTC 271


>sp|CCA_THEAC|CCA-ADDING enzyme|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 HDRVTC 8
HDR TC
Sbjct: 266 HDRGTC 271


>sp|TBPF_HALSA|TATA-BOX-BINDING protein F|Halobacterium salinarum (strain ATCC 700922

Query: 1 HVHDRVT 7
HV+DR+T
Sbjct: 174 HVNDRLT 180


>sp|PSTB_HALWD|PHOSPHATE import ATP-binding protein PstB|Haloquadratum walsbyi (strain DSM

Query: 2 VHDRVTCNA 10
VHDR+ NA
Sbjct: 192 VHDRLDDNA 200


>sp|SYDND_METMP|ASPARTATE--TRNA(ASP/ASN) ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 HVHDRVTCNA 10
H HD C A
Sbjct: 343 HKHDNKVCKA 352


>sp|SYDND_METM5|ASPARTATE--TRNA(ASP/ASN) ligase|Methanococcus maripaludis (strain C5 /

Query: 1 HVHDRVTCNA 10
H HD C A
Sbjct: 343 HKHDNKVCKA 352




33|SequenceR|170|161|RNGLCHVHDR

>sp|NADA2_METAC|QUINOLINATE synthase 2|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 RNGLCHVHD 9
R G CHVH+
Sbjct: 173 RPGFCHVHE 181


>sp|Y1289_HALVD|UNCHARACTERIZED protein HVO_1289|Haloferax volcanii (strain ATCC 29605

Query: 4 LCHVHD 9
+CHVHD
Sbjct: 110 ICHVHD 115


>sp|NADA_METB6|QUINOLINATE synthase|Methanoregula boonei (strain DSM 21154

Query: 3 GLCHVHDR 10
G C VHDR
Sbjct: 170 GFCLVHDR 177


>sp|SFSA_SULAC|SUGAR fermentation stimulation protein homolog|Sulfolobus

Query: 4 LCHVHD 9
LCH+HD
Sbjct: 36 LCHLHD 41


>sp|NADA_HALSA|QUINOLINATE synthase|Halobacterium salinarum (strain ATCC 700922

Query: 2 NGLCHVHDR 10
+G C VH+R
Sbjct: 233 DGYCQVHER 241


>sp|NADA_HALS3|QUINOLINATE synthase|Halobacterium salinarum (strain ATCC 29341

Query: 2 NGLCHVHDR 10
+G C VH+R
Sbjct: 233 DGYCQVHER 241


>sp|PYRC_PYRAE|DIHYDROOROTASE aerophilum (strain ATCC 51768

Query: 2 NGLCHVHDR 10
+GLCHV+ R
Sbjct: 231 SGLCHVNPR 239


>sp|NADA_PYRAB|QUINOLINATE synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 NGLCHVHDR 10
NG C+VH +
Sbjct: 167 NGHCYVHQK 175


>sp|NADA_PYRAE|QUINOLINATE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 NGLCHVHDR 10
+G CHVH +
Sbjct: 165 DGECHVHAK 173


>sp|NADA_HALMA|QUINOLINATE synthase|Haloarcula marismortui (strain ATCC 43049

Query: 3 GLCHVHDR 10
G C VH+R
Sbjct: 234 GYCQVHER 241


>sp|SFSA_SULTO|SUGAR fermentation stimulation protein homolog|Sulfurisphaera tokodaii

Query: 4 LCHVHD 9
+CH+HD
Sbjct: 30 ICHLHD 35


>sp|MTAD2_ARCFU|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 RNGLCHVH 8
RNGLC ++
Sbjct: 7 RNGLCFIN 14


>sp|NADA_THEKO|QUINOLINATE synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 NGLCHVHDR 10
NG C+VH +
Sbjct: 170 NGHCYVHRK 178


>sp|PROA_METBU|GAMMA-GLUTAMYL phosphate reductase|Methanococcoides burtonii (strain DSM 6242

Query: 2 NGLCHVH 8
+G+CHV+
Sbjct: 228 DGICHVY 234


>sp|FLPA_METHJ|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanospirillum hungatei JF-1

Query: 3 GLCHVH 8
LCH+H
Sbjct: 36 ALCHIH 41


>sp|RF1_METM5|PEPTIDE chain release factor subunit|Methanococcus maripaludis (strain C5 /

Query: 4 LCHVHD 9
LCH+H+
Sbjct: 383 LCHMHN 388


>sp|PGP_METBU|PHOSPHOGLYCOLATE phosphatase|Methanococcoides burtonii (strain DSM 6242

Query: 2 NGLCHVH 8
N LC+VH
Sbjct: 42 NPLCYVH 48


>sp|EF1B_PICTO|ELONGATION factor 1-beta|Picrophilus torridus (strain ATCC 700027

Query: 2 NGLCHVHD 9
NG+C ++D
Sbjct: 31 NGVCKIND 38


>sp|TRM1_HALSA|TRNA (guanine(26)-N(2))-dimethyltransferase|Halobacterium salinarum

Query: 2 NGLCHVHDR 10
N L H HDR
Sbjct: 109 NSLLHDHDR 117


>sp|TRM1_HALS3|TRNA (guanine(26)-N(2))-dimethyltransferase|Halobacterium salinarum

Query: 2 NGLCHVHDR 10
N L H HDR
Sbjct: 109 NSLLHDHDR 117


>sp|SYM_METLZ|METHIONINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 NGLCHV 7
NG CH+
Sbjct: 16 NGFCHL 21


>sp|TBPF_HALSA|TATA-BOX-BINDING protein F|Halobacterium salinarum (strain ATCC 700922

Query: 1 RNGLCHVHDR 10
++ L HV+DR
Sbjct: 169 QHALAHVNDR 178


>sp|SYT_THEAC|THREONINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 LCHVHD 9
+CH HD
Sbjct: 441 VCHSHD 446


>sp|PROA_METMA|GAMMA-GLUTAMYL phosphate reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 NGLCHVH 8
+G+CH++
Sbjct: 228 SGICHIY 234


>sp|PROA_METBF|GAMMA-GLUTAMYL phosphate reductase|Methanosarcina barkeri (strain Fusaro /

Query: 2 NGLCHVH 8
+G+CH++
Sbjct: 228 SGICHIY 234


>sp|PROA_METAC|GAMMA-GLUTAMYL phosphate reductase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 NGLCHVH 8
+G+CH++
Sbjct: 228 SGICHIY 234


>sp|PROA_NATPD|GAMMA-GLUTAMYL phosphate reductase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 GLCHVH 8
G+CHV+
Sbjct: 226 GVCHVY 231


>sp|PROA_HALWD|GAMMA-GLUTAMYL phosphate reductase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 GLCHVH 8
G+CHV+
Sbjct: 233 GVCHVY 238




34|SequenceR|175|166|MKPFTRNGLC

>sp|DP2L_PYRFU|DNA polymerase II large subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 1 MKPFTRNGLC 10
+KP+TR +C
Sbjct: 1169 VKPYTRQRIC 1178


>sp|GCSPA_SULTO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Sulfurisphaera

Query: 1 MKPFTRNGLC 10
M PF GLC
Sbjct: 71 MPPFLGGGLC 80


>sp|SYA_METLZ|ALANINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 KPFTRNGLC 10
+PF +G+C
Sbjct: 102 QPFVTSGVC 110


>sp|CARB_METHJ|CARBAMOYL phosphate synthase large chain|Methanospirillum hungatei JF-1

Query: 2 KPFTRNGL 9
K FT NGL
Sbjct: 945 KTFTENGL 952


>sp|NTPTH_PYRIL|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Pyrobaculum islandicum (strain DSM 4184

Query: 2 KPFTRNGL 9
KPF R G+
Sbjct: 66 KPFAREGI 73


>sp|RS5_METVS|SMALL ribosomal subunit protein uS5|Methanococcus vannielii (strain ATCC

Query: 3 PFTRNGLC 10
PFT G C
Sbjct: 138 PFTAKGTC 145


>sp|RS5_METVA|SMALL ribosomal subunit protein uS5|Methanococcus vannielii

Query: 3 PFTRNGLC 10
PFT G C
Sbjct: 138 PFTAKGTC 145


>sp|RS5_METM7|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain C7

Query: 3 PFTRNGLC 10
PFT G C
Sbjct: 142 PFTAKGAC 149


>sp|RS5_METM6|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain C6

Query: 3 PFTRNGLC 10
PFT G C
Sbjct: 142 PFTAKGAC 149


>sp|RS5_METMP|SMALL ribosomal subunit protein uS5|Methanococcus maripaludis (strain DSM

Query: 3 PFTRNGLC 10
PFT G C
Sbjct: 138 PFTAKGAC 145




35|SequenceR|180|171|WNCYLMKPFT

>sp|SYFA_PYRAR|PHENYLALANINE--TRNA ligase alpha subunit|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 WNCYLMKPF 9
W YL+KPF
Sbjct: 195 WRTYLLKPF 203


>sp|SYFA_METM5|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus maripaludis (strain C5 /

Query: 1 WNCYLMKPF 9
WN Y ++P+
Sbjct: 211 WNDYFIRPY 219


>sp|SYFA_METM7|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus maripaludis (strain C7 /

Query: 1 WNCYLMKPF 9
WN Y ++P+
Sbjct: 211 WNDYTIRPY 219


>sp|Y3408_METJA|UNCHARACTERIZED protein MJECS08|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 YLMKPFT 10
YL+KP+T
Sbjct: 837 YLLKPYT 843


>sp|FILR2_METH6|PROBABLE methanogenesis regulatory protein FilR2|Methanothrix harundinacea

Query: 2 NCYLMKPFT 10
N YL+KP +
Sbjct: 122 NSYLIKPLS 130


>sp|TRPF_METVS|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanococcus vannielii (strain ATCC 35089

Query: 1 WNCYLMKPF 9
+ C++MK F
Sbjct: 94 YGCFIMKSF 102


>sp|TRPF_METMP|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanococcus maripaludis (strain DSM 14266

Query: 1 WNCYLMKPF 9
+ C++MK F
Sbjct: 94 YGCFIMKSF 102


>sp|TRPF_METM7|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanococcus maripaludis (strain C7 /

Query: 1 WNCYLMKPF 9
+ C++MK F
Sbjct: 94 YGCFIMKSF 102


>sp|TRPF_METM6|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanococcus maripaludis (strain C6 /

Query: 1 WNCYLMKPF 9
+ C++MK F
Sbjct: 94 YGCFIMKSF 102


>sp|TRPF_METM5|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanococcus maripaludis (strain C5 /

Query: 1 WNCYLMKPF 9
+ C++MK F
Sbjct: 94 YGCFIMKSF 102


>sp|ENO_METLZ|ENOLASE labreanum (strain ATCC 43576

Query: 2 NCYLMKP 8
NC L+KP
Sbjct: 321 NCVLIKP 327


>sp|ENO3_METHJ|ENOLASE 3|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 NCYLMKP 8
NC L+KP
Sbjct: 320 NCVLIKP 326


>sp|HDRB_METKA|COB--COM heterodisulfide reductase subunit B|Methanopyrus kandleri (strain

Query: 1 WNCYLMKP 8
+ C+L+KP
Sbjct: 159 YGCHLLKP 166


>sp|HDRB2_METAC|FERREDOXIN/F(420)H(2)-DEPENDENT CoB-CoM heterodisulfide reductase subunit|Methanosarcina

Query: 1 WNCYLMKP 8
+ C+L+KP
Sbjct: 152 YGCHLIKP 159


>sp|SYI_METHJ|ISOLEUCINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 CYLMKPFT 10
C L+ PFT
Sbjct: 761 CRLLAPFT 768


>sp|HDRB_METMA|FERREDOXIN:COB-COM heterodisulfide reductase subunit B|Methanosarcina mazei (strain

Query: 1 WNCYLMKP 8
+ C+L+KP
Sbjct: 152 YGCHLIKP 159




36|SequenceR|185|176|KYGGTWNCYL

>sp|QUEC_HALMA|7-CYANO-7-DEAZAGUANINE synthase|Haloarcula marismortui (strain ATCC 43049

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 186 YADTWSCY 193


>sp|QUEC_METB6|7-CYANO-7-DEAZAGUANINE synthase|Methanoregula boonei (strain DSM 21154

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 177 YANTWSCY 184


>sp|QUEC_METTP|7-CYANO-7-DEAZAGUANINE synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 5 TWNCYL 10
TW+CYL
Sbjct: 187 TWSCYL 192


>sp|QUEC_METHJ|7-CYANO-7-DEAZAGUANINE synthase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 181 YEDTWSCY 188


>sp|QUEC_METPE|7-CYANO-7-DEAZAGUANINE synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 181 YEHTWSCY 188


>sp|QUEC_HALSA|7-CYANO-7-DEAZAGUANINE synthase|Halobacterium salinarum (strain ATCC 700922

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 184 YEHTWSCY 191


>sp|QUEC_HALS3|7-CYANO-7-DEAZAGUANINE synthase|Halobacterium salinarum (strain ATCC 29341

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 184 YEHTWSCY 191


>sp|QUEC_THEAC|7-CYANO-7-DEAZAGUANINE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 184 YEKTWSCY 191


>sp|MCRA_METKA|METHYL-COENZYME M reductase I subunit|Methanopyrus kandleri (strain AV19 /

Query: 3 GGTWNCY 9
G TW+CY
Sbjct: 159 GLTWDCY 165


>sp|QUEC_METLZ|7-CYANO-7-DEAZAGUANINE synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 182 YEHTWSCY 189


>sp|QUEC_AERPE|7-CYANO-7-DEAZAGUANINE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 5 TWNCYL 10
TW+CYL
Sbjct: 209 TWSCYL 214


>sp|QUEC_METMJ|7-CYANO-7-DEAZAGUANINE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 182 YELTWSCY 189


>sp|QUEC_THEVO|7-CYANO-7-DEAZAGUANINE synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 183 YELTWSCY 190


>sp|Y732_METJA|UNCHARACTERIZED protein MJ0732|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YGGTWNCYL 10
YG T+N YL
Sbjct: 32 YGSTYNSYL 40


>sp|QUEC_ARCFU|7-CYANO-7-DEAZAGUANINE synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 178 YELTWSCY 185


>sp|QUEC_SULAC|7-CYANO-7-DEAZAGUANINE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 5 TWNCY 9
TW+CY
Sbjct: 425 TWSCY 429


>sp|QUEC_SACS2|7-CYANO-7-DEAZAGUANINE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 TWNCY 9
TW+CY
Sbjct: 426 TWSCY 430


>sp|QUEC2_SULTO|7-CYANO-7-DEAZAGUANINE synthase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 TWNCY 9
TW+CY
Sbjct: 423 TWSCY 427


>sp|Y1325_METJA|UNCHARACTERIZED HTH-type transcriptional regulator MJ1325|Methanocaldococcus

Query: 4 GTWNCY 9
GTWN Y
Sbjct: 67 GTWNFY 72


>sp|CHEB_METBU|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Methanococcoides

Query: 4 GTWNC 8
G WNC
Sbjct: 149 GNWNC 153


>sp|SYI_HALWD|ISOLEUCINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 392 RYGHCWRC 399


>sp|SYI_METKA|ISOLEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 409 RYGHCWRC 416


>sp|AOCD_ARCFU|ORNITHINE cyclodeaminase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KYGGTW 6
+YGG W
Sbjct: 107 RYGGEW 112


>sp|SYI_METMA|ISOLEUCINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 393 RYGHCWRC 400


>sp|SYI_METBF|ISOLEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 393 RYGHCWRC 400


>sp|SYI_METAR|ISOLEUCINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 443 RYGHCWRC 450


>sp|SYI_METAC|ISOLEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 393 RYGHCWRC 400


>sp|RL32_ARCFU|LARGE ribosomal subunit protein eL32|Archaeoglobus fulgidus (strain

Query: 1 KYGGTWN 7
+YGG W+
Sbjct: 49 RYGGKWS 55


>sp|ARADH_HALVD|L-ARABINOSE 1-dehydrogenase (NAD(P)(+))|Haloferax volcanii (strain ATCC 29605

Query: 3 GGTWNCY 9
GGT+N Y
Sbjct: 83 GGTYNVY 89


>sp|HCP_METJA|HYDROXYLAMINE reductase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YGGTW 6
YGG+W
Sbjct: 279 YGGSW 283


>sp|POK_THEKO|PANTOATE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 YGGTW 6
+GGTW
Sbjct: 119 FGGTW 123


>sp|SYI_METTP|ISOLEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 394 RYGHCWRC 401


>sp|SYI_METBU|ISOLEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 393 RYGHCWRC 400


>sp|SYI_METMJ|ISOLEUCINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 389 RYGHCWRC 396


>sp|SYI_METHJ|ISOLEUCINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 389 RYGHCWRC 396


>sp|RFCL_AERPE|REPLICATION factor C large subunit|Aeropyrum pernix (strain ATCC 700893

Query: 1 KYGGTW 6
K+GG W
Sbjct: 307 KFGGNW 312


>sp|SYI_METTM|ISOLEUCINE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 385 RYGFCWRC 392


>sp|SYI_METTH|ISOLEUCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 385 RYGFCWRC 392


>sp|SYFA_METMJ|PHENYLALANINE--TRNA ligase alpha subunit|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 YGGTWN 7
+GGTW+
Sbjct: 303 WGGTWS 308


>sp|SYI_METB6|ISOLEUCINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 389 RYGHCWRC 396


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 391 RYGHCWRC 398


>sp|SYI_ARCFU|ISOLEUCINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KYGGTWNC 8
+YG W C
Sbjct: 387 RYGHCWRC 394


>sp|MCRX_METJA|METHYL-COENZYME M reductase II subunit|Methanocaldococcus jannaschii (strain ATCC

Query: 3 GGTWNCY 9
G W+CY
Sbjct: 159 GLVWDCY 165


>sp|QUEC_PYRAE|7-CYANO-7-DEAZAGUANINE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 5 TWNCY 9
TW+CY
Sbjct: 211 TWSCY 215


>sp|THIC2_METST|PHOSPHOMETHYLPYRIMIDINE synthase 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 KYGGTWNCYL 10
+YG + CY+
Sbjct: 318 RYGANFICYV 327


>sp|SYI_NATPD|ISOLEUCINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 YGGTWNC 8
YG W C
Sbjct: 396 YGHCWRC 402


>sp|SYI_HALSA|ISOLEUCINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 YGGTWNC 8
YG W C
Sbjct: 398 YGHCWRC 404


>sp|ASSY_THEAC|ARGININOSUCCINATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 YGGTWN 7
YGG W+
Sbjct: 305 YGGLWH 310


>sp|QUEC_PICTO|7-CYANO-7-DEAZAGUANINE synthase|Picrophilus torridus (strain ATCC 700027

Query: 2 YGGTWNCY 9
Y TW+CY
Sbjct: 182 YKLTWSCY 189




37|SequenceR|190|181|LATSWKYGGT

>sp|Y614_PYRHO|UNCHARACTERIZED protein PH0614|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LATSWKYGGT 10
LA++W YG T
Sbjct: 135 LASAWDYGST 144


>sp|Y1435_PYRAB|UNCHARACTERIZED protein PYRAB14350|Pyrococcus abyssi (strain GE5 /

Query: 1 LATSWKYGGT 10
LA++W YG T
Sbjct: 135 LASAWDYGST 144


>sp|ARGDC_METS5|ARGININE decarboxylase proenzyme|Metallosphaera sedula (strain ATCC 51363

Query: 2 ATSWKYGG 9
A SW +GG
Sbjct: 55 AKSWSFGG 62


>sp|PURP_PYRIL|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 LATSWKYG 8
L T WKYG
Sbjct: 239 LPTIWKYG 246


>sp|PURP_PYRNV|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrobaculum neutrophilum (strain DSM

Query: 1 LATSWKYG 8
L T WKYG
Sbjct: 250 LPTIWKYG 257


>sp|DNLI_HALMA|DNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 2 ATSWKYGG 9
A WKY G
Sbjct: 251 AVEWKYDG 258


>sp|RL30E_CALMQ|LARGE ribosomal subunit protein eL30|Caldivirga maquilingensis (strain

Query: 2 ATSWKYGG 9
TSW+ GG
Sbjct: 66 GTSWELGG 73


>sp|DGGGP_SULAC|DIGERANYLGERANYLGLYCERYL phosphate synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 LATSWKY 7
+AT+WK+
Sbjct: 28 IATTWKF 34


>sp|LEUD1_PYRFU|3-ISOPROPYLMALATE dehydratase small subunit 1|Pyrococcus furiosus (strain ATCC

Query: 4 SWKYG 8
+WKYG
Sbjct: 7 AWKYG 11


>sp|LEUD1_PYRAB|3-ISOPROPYLMALATE dehydratase small subunit 1|Pyrococcus abyssi (strain GE5 /

Query: 4 SWKYG 8
+WKYG
Sbjct: 7 AWKYG 11


>sp|ARGDC_SULAC|ARGININE decarboxylase proenzyme|Sulfolobus acidocaldarius (strain ATCC

Query: 4 SWKYGG 9
SW +GG
Sbjct: 59 SWSFGG 64


>sp|ARGDC_SULTO|ARGININE decarboxylase proenzyme|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 SWKYGG 9
SW +GG
Sbjct: 57 SWNFGG 62


>sp|Y934_PYRNV|UPF0282 protein Tneu_0934|Pyrobaculum neutrophilum (strain DSM 2338

Query: 5 WKYGGT 10
W +GGT
Sbjct: 142 WAFGGT 147


>sp|BACH_HALSS|HALORHODOPSIN sp. (strain SG1)

Query: 3 TSWKYGG 9
TSW Y G
Sbjct: 234 TSWAYSG 240


>sp|ARGDC_STAMF|ARGININE decarboxylase proenzyme|Staphylothermus marinus (strain ATCC

Query: 4 SWKYGG 9
SWK GG
Sbjct: 53 SWKLGG 58




38|SequenceR|195|186|TISLALATSW

>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1 (strain

Query: 3 SLALATSW 10
SLAL+ SW
Sbjct: 534 SLALSDSW 541




39|SequenceR|200|191|GFGGLTISLA

>sp|CMR1_SACS2|CRISPR system CMR subunit Cmr1|Saccharolobus solfataricus (strain ATCC

Query: 1 GFGGLTI 7
GFGGL+I
Sbjct: 250 GFGGLSI 256


>sp|MV3K_THEAC|MEVALONATE 3-kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 FGGLTIS 8
FGGLTI+
Sbjct: 147 FGGLTIT 153


>sp|HIS4_THEKO|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Thermococcus kodakarensis (strain

Query: 2 FGGLTISL 9
FGG+T+SL
Sbjct: 117 FGGITVSL 124


>sp|MV3K_PICTO|MEVALONATE-3-KINASE torridus (strain ATCC 700027

Query: 2 FGGLTISLA 10
+GGLT++ A
Sbjct: 152 YGGLTVNYA 160




40|SequenceR|205|196|YFRDAGFGGL

>sp|RS3_STAMF|SMALL ribosomal subunit protein uS3|Staphylothermus marinus (strain

Query: 1 YFRDAGFGGL 10
YF+DAG+ G+
Sbjct: 27 YFKDAGYAGM 36


>sp|AATA_METJA|A-TYPE ATP synthase subunit A|Methanocaldococcus jannaschii (strain ATCC

Query: 1 YFRDAGFGGL 10
YFRD G+G L
Sbjct: 318 YFRDMGYGVL 327


>sp|AATA_META3|A-TYPE ATP synthase subunit A|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 YFRDAGFGGL 10
YFRD G+G L
Sbjct: 317 YFRDMGYGVL 326


>sp|TRI_THEAC|TRICORN protease|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 YFRDAGFG 8
+FRDAGFG
Sbjct: 1014 WFRDAGFG 1021


>sp|AATA_METVS|A-TYPE ATP synthase subunit A|Methanococcus vannielii (strain ATCC 35089

Query: 1 YFRDAGFGGL 10
YFRD G G L
Sbjct: 316 YFRDQGLGVL 325


>sp|AATA_METMP|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain DSM 14266

Query: 1 YFRDAGFGGL 10
YFRD G G L
Sbjct: 316 YFRDQGLGVL 325


>sp|AATA_METM7|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C7 /

Query: 1 YFRDAGFGGL 10
YFRD G G L
Sbjct: 316 YFRDQGLGVL 325


>sp|AATA_METM6|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C6 /

Query: 1 YFRDAGFGGL 10
YFRD G G L
Sbjct: 316 YFRDQGLGVL 325


>sp|AATA_METM5|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C5 /

Query: 1 YFRDAGFGGL 10
YFRD G G L
Sbjct: 316 YFRDQGLGVL 325


>sp|AATA_METAR|A-TYPE ATP synthase subunit A|Methanocella arvoryzae (strain DSM 22066

Query: 1 YFRDAGFG 8
Y+RD G+G
Sbjct: 313 YYRDMGYG 320


>sp|COFH_METHJ|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanospirillum hungatei JF-1 (strain

Query: 2 FRDAGFGGL 10
FRDAG G L
Sbjct: 168 FRDAGVGTL 176


>sp|PYRB_PYRIL|ASPARTATE carbamoyltransferase catalytic subunit|Pyrobaculum islandicum

Query: 1 YFRDAGFG 8
YFR A FG
Sbjct: 283 YFRQAAFG 290


>sp|RADA_METTH|DNA repair and recombination protein|Methanothermobacter

Query: 2 FRDAGFGGL 10
RDAGFG +
Sbjct: 18 LRDAGFGDM 26


>sp|AATA_SACS2|A-TYPE ATP synthase subunit A|Saccharolobus solfataricus (strain ATCC

Query: 1 YFRDAGFGGL 10
YFRD G+ L
Sbjct: 317 YFRDQGYDTL 326


>sp|AATA_SACI7|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 YFRDAGFGGL 10
YFRD G+ L
Sbjct: 317 YFRDQGYDTL 326


>sp|AATA_SACI6|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain M.16.4 /

Query: 1 YFRDAGFGGL 10
YFRD G+ L
Sbjct: 317 YFRDQGYDTL 326


>sp|AATA_SACI4|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain M.14.25 /

Query: 1 YFRDAGFGGL 10
YFRD G+ L
Sbjct: 317 YFRDQGYDTL 326


>sp|AATA_SACI3|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain M.16.27)

Query: 1 YFRDAGFGGL 10
YFRD G+ L
Sbjct: 317 YFRDQGYDTL 326


>sp|AATA_SACI2|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 YFRDAGFGGL 10
YFRD G+ L
Sbjct: 317 YFRDQGYDTL 326


>sp|AATA_SACI1|A-TYPE ATP synthase subunit A|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 YFRDAGFGGL 10
YFRD G+ L
Sbjct: 317 YFRDQGYDTL 326


>sp|AATA_THESI|A-TYPE ATP synthase subunit A|Thermococcus sp. (strain KI)

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 315 YFRDQGY 321


>sp|AATA_THEKO|A-TYPE ATP synthase subunit A|Thermococcus kodakarensis (strain ATCC

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 315 YFRDQGY 321


>sp|AATA_THEGJ|A-TYPE ATP synthase subunit A|Thermococcus gammatolerans (strain DSM 15229

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 315 YFRDQGY 321


>sp|AATA_SULTO|A-TYPE ATP synthase subunit A|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 318 YFRDQGY 324


>sp|AATA_SULAC|A-TYPE ATP synthase subunit A|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 318 YFRDQGY 324


>sp|AATA_PYRNV|A-TYPE ATP synthase subunit A|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 320 YFRDQGY 326


>sp|AATA_PYRIL|A-TYPE ATP synthase subunit A|Pyrobaculum islandicum (strain DSM 4184

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 320 YFRDQGY 326


>sp|AATA_PYRCJ|A-TYPE ATP synthase subunit A|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 320 YFRDQGY 326


>sp|AATA_PYRAR|A-TYPE ATP synthase subunit A|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 320 YFRDQGY 326


>sp|AATA_PYRAE|A-TYPE ATP synthase subunit A|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 320 YFRDQGY 326


>sp|AATA_NANEQ|A-TYPE ATP synthase subunit A|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 307 YFRDQGY 313


>sp|AATA_METS5|A-TYPE ATP synthase subunit A|Metallosphaera sedula (strain ATCC 51363

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 317 YFRDQGY 323


>sp|AATA_DESSY|A-TYPE ATP synthase subunit A|Desulfurococcus sp. (strain SY)

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 315 YFRDQGY 321


>sp|AATA_THESM|A-TYPE ATP synthase subunit A|Thermococcus sibiricus (strain DSM 12597

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 315 YFRDMGY 321


>sp|AATA_THEON|A-TYPE ATP synthase subunit A|Thermococcus onnurineus (strain NA1)

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 315 YFRDMGY 321


>sp|AATA_PYRHO|A-TYPE ATP synthase subunit A|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 694 YFRDMGY 700


>sp|AATA_PYRFU|A-TYPE ATP synthase subunit A|Pyrococcus furiosus (strain ATCC 43587

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 743 YFRDMGY 749


>sp|AATA_PYRAB|A-TYPE ATP synthase subunit A|Pyrococcus abyssi (strain GE5 /

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 747 YFRDMGY 753


>sp|AATA_METTH|A-TYPE ATP synthase subunit A|Methanothermobacter thermautotrophicus

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 317 YFRDMGY 323


>sp|AATA_METST|A-TYPE ATP synthase subunit A|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 316 YFRDMGY 322


>sp|AATA_METMJ|A-TYPE ATP synthase subunit A|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 318 YFRDMGY 324


>sp|AATA_METMA|A-TYPE ATP synthase subunit A|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 312 YFRDMGY 318


>sp|AATA_METLZ|A-TYPE ATP synthase subunit A|Methanocorpusculum labreanum (strain ATCC

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 316 YFRDMGY 322


>sp|AATA_METB6|A-TYPE ATP synthase subunit A|Methanoregula boonei (strain DSM 21154

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 321 YFRDMGY 327


>sp|AATA_METAC|A-TYPE ATP synthase subunit A|Methanosarcina acetivorans (strain ATCC

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 312 YFRDMGY 318


>sp|AATA_HALMA|A-TYPE ATP synthase subunit A|Haloarcula marismortui (strain ATCC 43049

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 322 YFRDMGY 328


>sp|AATA_ARCFU|A-TYPE ATP synthase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 318 YFRDMGY 324


>sp|AATA1_METHJ|A-TYPE ATP synthase subunit A|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 315 YFRDMGY 321


>sp|RS3_PYRAB|SMALL ribosomal subunit protein uS3|Pyrococcus abyssi (strain GE5 /

Query: 2 FRDAGFGGL 10
R AG+GGL
Sbjct: 25 LRRAGYGGL 33


>sp|AATA_STAMF|A-TYPE ATP synthase subunit A|Staphylothermus marinus (strain ATCC 43588

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 315 YFRDMGY 321


>sp|RS3_PYRHO|SMALL ribosomal subunit protein uS3|Pyrococcus horikoshii (strain ATCC

Query: 2 FRDAGFGGL 10
R AG+GGL
Sbjct: 25 LRRAGYGGL 33


>sp|RS3_PYRFU|SMALL ribosomal subunit protein uS3|Pyrococcus furiosus (strain ATCC

Query: 2 FRDAGFGGL 10
R AG+GGL
Sbjct: 25 LRRAGYGGL 33


>sp|SYY_ARCFU|TYROSINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 RDAGFGG 9
RDA FGG
Sbjct: 270 RDAKFGG 276


>sp|RS3_THESM|SMALL ribosomal subunit protein uS3|Thermococcus sibiricus (strain DSM

Query: 2 FRDAGFGGL 10
R AG+GGL
Sbjct: 25 LRRAGYGGL 33


>sp|AATA_IGNH4|A-TYPE ATP synthase subunit A|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 YFRDAGFGGL 10
Y+RD G+ L
Sbjct: 325 YYRDMGYDSL 334


>sp|RS3_ARCFU|SMALL ribosomal subunit protein uS3|Archaeoglobus fulgidus (strain ATCC

Query: 3 RDAGFGGL 10
R AGFGG+
Sbjct: 26 RSAGFGGV 33


>sp|RS3_PICTO|SMALL ribosomal subunit protein uS3|Picrophilus torridus (strain ATCC

Query: 4 DAGFGGL 10
+AGFGG+
Sbjct: 26 NAGFGGM 32


>sp|COXX_HALWD|PROTOHEME IX farnesyltransferase|Haloquadratum walsbyi (strain DSM 16790

Query: 4 DAGFGGL 10
D GFGGL
Sbjct: 351 DIGFGGL 357


>sp|RS3_METB6|SMALL ribosomal subunit protein uS3|Methanoregula boonei (strain DSM

Query: 2 FRDAGFGGL 10
+ AGFGG+
Sbjct: 25 LKRAGFGGM 33


>sp|RS3_THEKO|SMALL ribosomal subunit protein uS3|Thermococcus kodakarensis (strain

Query: 2 FRDAGFGGL 10
R AG+GGL
Sbjct: 25 LRRAGYGGL 33


>sp|FRHD_METTH|COENZYME F420 hydrogenase subunit delta|Methanothermobacter

Query: 2 FRDAGFG 8
F+D GFG
Sbjct: 17 FKDDGFG 23


>sp|PCKA_AERPE|PHOSPHOENOLPYRUVATE carboxykinase (ATP)|Aeropyrum pernix (strain ATCC 700893

Query: 1 YFRDAGFGGL 10
Y RD GF L
Sbjct: 62 YLRDEGFDRL 71


>sp|GLMM_METS3|PROBABLE phosphoglucosamine mutase|Methanobrevibacter smithii (strain ATCC

Query: 3 RDAGFGG 9
+DA FGG
Sbjct: 306 KDAAFGG 312


>sp|HUTH_THEVO|PROBABLE histidine ammonia-lyase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 YFRDAGFGGL 10
Y + GFGGL
Sbjct: 52 YGVNTGFGGL 61


>sp|RS3_THEON|SMALL ribosomal subunit protein uS3|Thermococcus onnurineus (strain

Query: 2 FRDAGFGGL 10
R AG+GG+
Sbjct: 25 LRRAGYGGI 33


>sp|PURL_METTP|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanothrix thermoacetophila (strain DSM

Query: 2 FRDAGFGGL 10
F+D G GGL
Sbjct: 283 FKDLGGGGL 291


>sp|RPA_METJA|REPLICATION factor A|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YFRDAGFGGL 10
Y R+ +GGL
Sbjct: 247 YIREGYYGGL 256


>sp|ALF1_THETK|FRUCTOSE-BISPHOSPHATE aldolase class 1|Thermoproteus tenax (strain ATCC 35583

Query: 3 RDAGFGGL 10
RDAGF G+
Sbjct: 51 RDAGFDGV 58


>sp|NRPR2_METMA|GLOBAL nitrogen regulator NrpRII|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 DAGFGGL 10
DAGF G+
Sbjct: 184 DAGFSGI 190


>sp|ENDA_PYRIL|TRNA-SPLICING endonuclease|Pyrobaculum islandicum (strain DSM 4184

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 99 YFRDLGY 105


>sp|RS3_THEGJ|SMALL ribosomal subunit protein uS3|Thermococcus gammatolerans (strain

Query: 2 FRDAGFGGL 10
R AG+GG+
Sbjct: 25 LRRAGYGGI 33


>sp|ENDA_PYRAR|TRNA-SPLICING endonuclease|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 99 YFRDLGY 105


>sp|TRI_SACS2|TRICORN protease homolog|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 FRDAGFG 8
F D GFG
Sbjct: 1024 FEDVGFG 1030


>sp|ENDA_PYRNV|TRNA-SPLICING endonuclease|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 99 YFRDLGY 105


>sp|ENDA_PYRAE|TRNA-SPLICING endonuclease|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 YFRDAGF 7
YFRD G+
Sbjct: 99 YFRDLGY 105




41|SequenceR|210|201|RWQGLYFRDA

>sp|Y908_METJA|UNCHARACTERIZED protein MJ0908|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WQGLYFR 8
WQG+Y++
Sbjct: 153 WQGIYYK 159


>sp|SYI_THEKO|ISOLEUCINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 RWQGLYFRDA 10
+W+G+Y +DA
Sbjct: 368 KWKGVYVKDA 377


>sp|SYI_META3|ISOLEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 RWQGLYFRDA 10
+W+G++ +DA
Sbjct: 374 KWKGVFVKDA 383


>sp|GCSPA_THEGJ|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermococcus

Query: 2 WQGLYFRD 9
++GLYF+D
Sbjct: 379 FEGLYFKD 386


>sp|UPP_THEON|URACIL phosphoribosyltransferase|Thermococcus onnurineus (strain NA1)

Query: 1 RWQGLY-FRDA 10
RW+G+Y F D+
Sbjct: 6 RWEGVYSFEDS 16


>sp|UPP_THEKO|URACIL phosphoribosyltransferase|Thermococcus kodakarensis (strain ATCC

Query: 1 RWQGLY-FRDA 10
RW+G+Y F D+
Sbjct: 6 RWEGVYSFEDS 16


>sp|UPP_METMP|URACIL phosphoribosyltransferase|Methanococcus maripaludis (strain DSM

Query: 1 RWQGLY-FRDA 10
RW+G+Y F D+
Sbjct: 6 RWEGVYSFEDS 16


>sp|UPP_METM7|URACIL phosphoribosyltransferase|Methanococcus maripaludis (strain C7 /

Query: 1 RWQGLY-FRDA 10
RW+G+Y F D+
Sbjct: 6 RWEGVYSFEDS 16


>sp|UPP_METM6|URACIL phosphoribosyltransferase|Methanococcus maripaludis (strain C6 /

Query: 1 RWQGLY-FRDA 10
RW+G+Y F D+
Sbjct: 6 RWEGVYSFEDS 16


>sp|UPP_METM5|URACIL phosphoribosyltransferase|Methanococcus maripaludis (strain C5 /

Query: 1 RWQGLY-FRDA 10
RW+G+Y F D+
Sbjct: 6 RWEGVYSFEDS 16


>sp|TRM1_PYRAE|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrobaculum aerophilum

Query: 2 WQGLYFR 8
W+G YFR
Sbjct: 213 WEGHYFR 219


>sp|ACYP_METBU|ACYLPHOSPHATASE burtonii (strain DSM 6242

Query: 1 RWQGLYFR 8
R QG+YFR
Sbjct: 17 RVQGVYFR 24


>sp|UPP_PYRAB|URACIL phosphoribosyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 1 RWQGLY-FRDA 10
RW+G+Y F D+
Sbjct: 6 RWKGVYSFEDS 16


>sp|Y1081_METJA|UPF0047 protein MJ1081|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WQGLYFRD 9
WQG++F +
Sbjct: 114 WQGIFFAE 121


>sp|SYI_METKA|ISOLEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 RWQGLYFRDA 10
+++GLY RDA
Sbjct: 377 KYEGLYVRDA 386


>sp|SYI_METJA|ISOLEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RWQGLYFRDA 10
+W+G++ +DA
Sbjct: 369 KWKGVFVKDA 378


>sp|TRM1_PYRAR|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrobaculum arsenaticum

Query: 2 WQGLYFR 8
W+G YFR
Sbjct: 213 WEGHYFR 219


>sp|TRM1_PYRCJ|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrobaculum calidifontis

Query: 2 WQGLYFR 8
W+G YFR
Sbjct: 215 WEGHYFR 221


>sp|UPP_THEGJ|URACIL phosphoribosyltransferase|Thermococcus gammatolerans (strain DSM

Query: 1 RWQGLY-FRDA 10
RW G+Y F D+
Sbjct: 6 RWDGVYSFEDS 16


>sp|KDGK_THETE|2-DEHYDRO-3-DEOXYGLUCONOKINASE tenax

Query: 4 GLYFRDA 10
G YFRDA
Sbjct: 253 GSYFRDA 259


>sp|SYI_PYRHO|ISOLEUCINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 RWQGLYFRDA 10
+W+G+Y ++A
Sbjct: 368 KWKGIYVKEA 377


>sp|SYI_PYRAB|ISOLEUCINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 RWQGLYFRDA 10
+W+G+Y ++A
Sbjct: 368 KWKGIYVKEA 377


>sp|Y090_METJA|UNCHARACTERIZED protease MJ0090|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 GLYFRD 9
G YFRD
Sbjct: 298 GFYFRD 303


>sp|ILVB_METJA|PROBABLE acetolactate synthase large subunit|Methanocaldococcus jannaschii

Query: 1 RWQGLYF 7
+WQ LY+
Sbjct: 482 QWQNLYY 488


>sp|SYI_PYRFU|ISOLEUCINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 RWQGLYFRDA 10
+W+G+Y ++A
Sbjct: 368 KWKGVYVKEA 377


>sp|TRM56_METS5|TRNA (cytidine(56)-2'-O)-methyltransferase|Metallosphaera sedula

Query: 2 WQGLYFR 8
W G YFR
Sbjct: 50 WGGKYFR 56


>sp|TRM1_PYRNV|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrobaculum neutrophilum

Query: 2 WQGLYFR 8
W+G YFR
Sbjct: 211 WEGHYFR 217


>sp|SYR_METTH|ARGININE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 WQGLYFRDA 10
W+G + RD
Sbjct: 256 WEGQFVRDG 264


>sp|PCKG_THEKO|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Thermococcus kodakarensis (strain ATCC

Query: 1 RWQGLYF 7
RW+ LY+
Sbjct: 57 RWKALYY 63


>sp|PCKG_PYRHO|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 RWQGLYF 7
RW+ LY+
Sbjct: 54 RWKALYY 60


>sp|PCKG_PYRAB|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Pyrococcus abyssi (strain GE5 /

Query: 1 RWQGLYF 7
RW+ LY+
Sbjct: 54 RWKALYY 60


>sp|SYI_THEAC|ISOLEUCINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 WQGLYFRDA 10
W G + RDA
Sbjct: 357 WNGKFVRDA 365


>sp|PCKG_PYRFU|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Pyrococcus furiosus (strain ATCC 43587

Query: 1 RWQGLYF 7
RW+ LY+
Sbjct: 59 RWKALYY 65


>sp|FLPA_AERPE|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Aeropyrum pernix (strain ATCC

Query: 1 RWQGLY 6
RW+G+Y
Sbjct: 12 RWRGVY 17


>sp|Y1185_METJA|UNCHARACTERIZED protein MJ1185|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WQGLYF 7
W G YF
Sbjct: 71 WDGFYF 76




42|SequenceR|215|206|KGLGERWQGL

>sp|HDRC1_METAC|FERREDOXIN:COB-COM heterodisulfide reductase subunit C|Methanosarcina acetivorans

Query: 1 KGLGERWQGL 10
K LGERW G+
Sbjct: 149 KDLGERWIGI 158


>sp|SYL_PYRNV|LEUCINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 LGERWQ 8
LGERWQ
Sbjct: 11 LGERWQ 16


>sp|PDXS_ARCFU|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Archaeoglobus fulgidus (strain

Query: 1 KGLGERWQGL 10
KGLGE +GL
Sbjct: 311 KGLGEAMKGL 320


>sp|Y1602_METBF|UNCHARACTERIZED protein Mbar_A1602|Methanosarcina barkeri (strain Fusaro /

Query: 2 GLGERWQG 9
G GE W G
Sbjct: 269 GFGEYWTG 276


>sp|SYL_PYRAR|LEUCINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 LGERWQ 8
LGE+WQ
Sbjct: 11 LGEKWQ 16


>sp|Y819_PYRHO|UNCHARACTERIZED methyltransferase PH0819|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 LGERWQG 9
G+RW+G
Sbjct: 215 FGKRWRG 221


>sp|LIPA_SACS2|LIPOYL synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GLGERW 7
GLGE W
Sbjct: 196 GLGETW 201


>sp|FTSY_METJA|SIGNAL recognition particle receptor FtsY|Methanocaldococcus jannaschii

Query: 2 GLGERWQGL 10
G+G+R+Q L
Sbjct: 375 GVGQRYQDL 383


>sp|Y3528_METJA|UNCHARACTERIZED protein MJECL28|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KGLGERW 7
K LG+RW
Sbjct: 361 KKLGKRW 367


>sp|CARB_HALSA|CARBAMOYL phosphate synthase large chain|Halobacterium salinarum (strain ATCC

Query: 1 KGLGERWQ 8
+GLGER++
Sbjct: 961 EGLGERFE 968


>sp|FAU1_CALMQ|PROBABLE ribonuclease FAU-1|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 GLGERWQ 8
GLG RW+
Sbjct: 187 GLGIRWR 193


>sp|T1R1_METJA|PUTATIVE type I restriction enzyme|Methanocaldococcus jannaschii (strain

Query: 1 KGLGERWQG 9
KGL WQG
Sbjct: 204 KGLIWHWQG 212


>sp|CDPAS_HYPBU|CDP-ARCHAEOL synthase|Hyperthermus butylicus (strain DSM 5456

Query: 2 GLGERWQGL 10
G G+ W+GL
Sbjct: 48 GPGKTWEGL 56


>sp|Y35K_HALSI|UNCHARACTERIZED 36 kDa protein|Halobacterium salinarum (Halobacterium halobium)

Query: 1 KGLGERWQGL 10
+GL ERW L
Sbjct: 80 RGLRERWGSL 89


>sp|QUEC_PYRAE|7-CYANO-7-DEAZAGUANINE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 LGERWQG 9
LGE W+G
Sbjct: 81 LGELWRG 87


>sp|COFG_METKA|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanopyrus kandleri (strain AV19 /

Query: 2 GLGERWQ 8
G+GE W+
Sbjct: 175 GIGETWE 181




43|SequenceR|220|211|GFSFLKGLGE

>sp|COFC_METVM|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus vulcanius (strain ATCC

Query: 1 GFSFLKGLGE 10
GFSFLK L E
Sbjct: 145 GFSFLKHLKE 154


>sp|COFC_METJA|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 GFSFLKGLGE 10
GFSFLK L E
Sbjct: 151 GFSFLKHLEE 160


>sp|COFC_METFA|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus fervens (strain DSM 4213

Query: 1 GFSFLKGLGE 10
GFSFLK L E
Sbjct: 145 GFSFLKHLEE 154


>sp|COFC_METSF|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus sp. (strain FS406-22)

Query: 1 GFSFLKGLGE 10
GFSFLK L E
Sbjct: 145 GFSFLKHLEE 154


>sp|ENGB_HALMA|PROBABLE GTP-binding protein EngB|Haloarcula marismortui (strain ATCC

Query: 1 GFSFLKGLGE 10
GF F+KG+ E
Sbjct: 63 GFGFMKGVPE 72


>sp|COFC_METVS|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus vannielii (strain ATCC 35089

Query: 1 GFSFLKGLGE 10
GFSFLK + E
Sbjct: 149 GFSFLKHIKE 158


>sp|COFC_METIM|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus infernus (strain DSM 11812

Query: 1 GFSFLKGLGE 10
GFSFLK L E
Sbjct: 143 GFSFLKHLEE 152


>sp|ASD_ARCFU|PUTATIVE archaetidylserine decarboxylase proenzyme|Archaeoglobus fulgidus

Query: 1 GFSFLKGLGE 10
GF F++G+GE
Sbjct: 168 GFRFVRGVGE 177


>sp|COFC_METMP|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain DSM 14266

Query: 1 GFSFLKGLGE 10
GFSFLK + E
Sbjct: 149 GFSFLKHIEE 158


>sp|COFC_METM7|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain C7 /

Query: 1 GFSFLKGLGE 10
GFSFLK + E
Sbjct: 149 GFSFLKHIEE 158


>sp|COFC_METM6|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain C6 /

Query: 1 GFSFLKGLGE 10
GFSFLK + E
Sbjct: 149 GFSFLKHIEE 158


>sp|COFC_METM5|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain C5 /

Query: 1 GFSFLKGLGE 10
GFSFLK + E
Sbjct: 149 GFSFLKHIEE 158


>sp|COFC_META3|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 GFSFLKGLGE 10
GFSFLK + E
Sbjct: 148 GFSFLKHIEE 157


>sp|CCA_AERPE|CCA-ADDING enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 3 SFLKGLG 9
SFLKG+G
Sbjct: 172 SFLKGIG 178


>sp|SYS_METAC|SERINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GFSFLKGLG 9
GF+ KGLG
Sbjct: 162 GFTVYKGLG 170


>sp|CARB_THEAC|CARBAMOYL phosphate synthase large chain|Thermoplasma acidophilum (strain

Query: 2 FSFLKGLGE 10
+ FLK +GE
Sbjct: 133 YEFLKAMGE 141


>sp|Y3410_METJA|UNCHARACTERIZED protein MJECS10|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GFSFLKGLG 9
FSF+ GLG
Sbjct: 208 AFSFIFGLG 216


>sp|EF1A_DESMO|ELONGATION factor 1-alpha|Desulfurococcus mucosus (Desulfurococcus mobilis)

Query: 4 FLKGLG 9
FLKGLG
Sbjct: 178 FLKGLG 183


>sp|CCA_METMP|CCA-ADDING enzyme|Methanococcus maripaludis (strain DSM 14266

Query: 4 FLKGLG 9
FLKGLG
Sbjct: 170 FLKGLG 175


>sp|CCA_METM7|CCA-ADDING enzyme|Methanococcus maripaludis (strain C7 /

Query: 4 FLKGLG 9
FLKGLG
Sbjct: 170 FLKGLG 175


>sp|CCA_METM5|CCA-ADDING enzyme|Methanococcus maripaludis (strain C5 /

Query: 4 FLKGLG 9
FLKGLG
Sbjct: 170 FLKGLG 175


>sp|ADEC_STAMF|ADENINE deaminase|Staphylothermus marinus (strain ATCC 43588

Query: 1 GFSFLKGLG 9
G F+KGLG
Sbjct: 470 GKGFIKGLG 478


>sp|SYS_METBF|SERINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 GFSFLKGLG 9
GF+ KG+G
Sbjct: 162 GFTVYKGMG 170


>sp|SYS_METMA|SERINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GFSFLKGLG 9
GF+ KG+G
Sbjct: 162 GFAVYKGMG 170


>sp|ADEC_METBU|ADENINE deaminase|Methanococcoides burtonii (strain DSM 6242

Query: 1 GFSFLKGLG 9
G F+KG+G
Sbjct: 447 GTGFIKGMG 455


>sp|CCA_HALLT|CCA-ADDING enzyme|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 SFLKGLG 9
+FLKG+G
Sbjct: 161 AFLKGIG 167


>sp|SYH_PYRAB|HISTIDINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 4 FLKGLGE 10
FLK LGE
Sbjct: 194 FLKALGE 200


>sp|RIFK_METAC|RIBOFLAVIN kinase|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 LKGLGE 10
LKGLGE
Sbjct: 109 LKGLGE 114


>sp|Y303_PYRFU|UPF0284 protein PF0303|Pyrococcus furiosus (strain ATCC 43587

Query: 3 SFLKGLGE 10
+ LKGLGE
Sbjct: 233 AILKGLGE 240


>sp|RIFK_METBF|RIBOFLAVIN kinase|Methanosarcina barkeri (strain Fusaro /

Query: 5 LKGLGE 10
LKGLGE
Sbjct: 97 LKGLGE 102


>sp|RIFK_METMA|RIBOFLAVIN kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 LKGLGE 10
LKGLGE
Sbjct: 97 LKGLGE 102




44|SequenceR|225|216|WIGLGGFSFL

>sp|CPGS_PYRHO|CYCLIC 2,3-diphosphoglycerate synthetase|Pyrococcus horikoshii (strain

Query: 3 GLGGFSFL 10
GL GF+FL
Sbjct: 214 GLAGFTFL 221


>sp|CPGS_PYRAB|CYCLIC 2,3-diphosphoglycerate synthetase|Pyrococcus abyssi (strain GE5 /

Query: 3 GLGGFSFL 10
GL GF+FL
Sbjct: 210 GLAGFTFL 217


>sp|GCSPA_AERPE|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Aeropyrum pernix

Query: 2 IGLGGFSFL 10
I LGGFSF
Sbjct: 426 IPLGGFSFF 434


>sp|ILVD_PYRNV|DIHYDROXY-ACID dehydratase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 WIGLGG 6
W+G+GG
Sbjct: 118 WVGIGG 123


>sp|ILVD_PYRIL|DIHYDROXY-ACID dehydratase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 WIGLGG 6
W+G+GG
Sbjct: 118 WVGIGG 123


>sp|ILVD_PYRAR|DIHYDROXY-ACID dehydratase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 WIGLGG 6
W+G+GG
Sbjct: 118 WVGIGG 123


>sp|ILVD_PYRCJ|DIHYDROXY-ACID dehydratase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 WIGLGG 6
W+G+GG
Sbjct: 118 WVGIGG 123


>sp|ILVD_AERPE|DIHYDROXY-ACID dehydratase|Aeropyrum pernix (strain ATCC 700893

Query: 1 WIGLGG 6
W+G+GG
Sbjct: 116 WVGIGG 121


>sp|ILVD_PYRAE|DIHYDROXY-ACID dehydratase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 WIGLGG 6
W+G+GG
Sbjct: 118 WVGIGG 123


>sp|OGT_SULAC|METHYLATED-DNA--PROTEIN-CYSTEINE methyltransferase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 GLGGFS 8
GLGGFS
Sbjct: 127 GLGGFS 132


>sp|NIFD_METMI|NITROGENASE molybdenum-iron protein alpha chain|Methanococcus maripaludis

Query: 1 WIGLGGF 7
+IG GGF
Sbjct: 440 YIGFGGF 446


>sp|FEN_METLZ|FLAP endonuclease 1|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 WIGLGGFS 8
W GLGG +
Sbjct: 18 WDGLGGIA 25


>sp|IDI2_PYRAR|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 GLGGFSFL 10
GLGG SF+
Sbjct: 217 GLGGTSFV 224


>sp|NEP1_STAMF|RIBOSOMAL RNA small subunit methyltransferase|Staphylothermus marinus (strain

Query: 2 IGLGGF 7
IG+GGF
Sbjct: 181 IGIGGF 186


>sp|FEN_METTP|FLAP endonuclease 1|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 WIGLGGFSFL 10
WI + GF+ L
Sbjct: 23 WIAVDGFNTL 32


>sp|COFD_METHJ|2-PHOSPHO-L-LACTATE transferase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 WIGLGGFSFL 10
W G+ G SFL
Sbjct: 64 WWGVRGDSFL 73


>sp|SYW_ARCFU|TRYPTOPHAN--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 IGLGGFSFL 10
+ +GGF+F+
Sbjct: 283 VEIGGFAFI 291


>sp|Y1468_METJA|UNCHARACTERIZED protein MJ1468|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IGLGGFS 8
IG+GG+S
Sbjct: 512 IGVGGYS 518




45|SequenceR|230|221|VDILTWIGLG

>sp|ENO_METTH|ENOLASE thermautotrophicus (strain ATCC 29096

Query: 1 VDILTWIGLG 10
VD++TW G G
Sbjct: 24 VDVITWNGFG 33


>sp|ENO_METST|ENOLASE stadtmanae (strain ATCC 43021

Query: 2 DILTWIGLG 10
D+LTW G G
Sbjct: 25 DVLTWNGFG 33


>sp|RFCS_NANEQ|REPLICATION factor C small subunit|Nanoarchaeum equitans (strain Kin4-M)

Query: 3 ILTWIGLG 10
+L W+GLG
Sbjct: 308 LLAWLGLG 315


>sp|ACDD1_METTE|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 1 VDILTWIG 8
VDI WIG
Sbjct: 426 VDITNWIG 433


>sp|ARLY_PYRNV|ARGININOSUCCINATE lyase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 DILTWIGLG 10
++ WIGLG
Sbjct: 92 EVAGWIGLG 100


>sp|ACDD2_METTE|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 1 VDILTWIG 8
VDI WIG
Sbjct: 427 VDIANWIG 434


>sp|ACDD_METMA|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina mazei

Query: 1 VDILTWIG 8
VDI WIG
Sbjct: 426 VDIANWIG 433


>sp|AATI_ARCFU|A-TYPE ATP synthase subunit I|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VDILTWIG 8
V++LTW G
Sbjct: 573 VELLTWFG 580


>sp|SYE_IGNH4|GLUTAMATE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 4 LTWIGLG 10
L+W+G+G
Sbjct: 158 LSWLGIG 164


>sp|BAX1_ARCFU|ENDONUCLEASE Bax1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 6 WIGLG 10
WIGLG
Sbjct: 456 WIGLG 460


>sp|ARLY_SACS2|ARGININOSUCCINATE lyase|Saccharolobus solfataricus (strain ATCC 35092

Query: 6 WIGLG 10
WIGLG
Sbjct: 90 WIGLG 94


>sp|SPSS1_METLZ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 1|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 VDILTWIGLG 10
VD+ W+G+
Sbjct: 68 VDVAEWLGMA 77


>sp|CAS8_THETK|CRISPR system associated protein Cas8|Thermoproteus tenax (strain ATCC

Query: 1 VDILTWI 7
VDIL W+
Sbjct: 264 VDILVWV 270


>sp|PORA_METTH|PYRUVATE synthase subunit PorA|Methanothermobacter thermautotrophicus

Query: 4 LTWIGL 9
+TWIGL
Sbjct: 373 VTWIGL 378


>sp|UPPS_SULAC|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (GGDP specific)|Sulfolobus acidocaldarius (strain ATCC

Query: 2 DILTWI 7
D+LTWI
Sbjct: 66 DVLTWI 71


>sp|ACDD2_METAC|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 1 VDILTWIG 8
VD+ WIG
Sbjct: 426 VDVANWIG 433


>sp|ACDD1_METAC|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanosarcina

Query: 1 VDILTWIG 8
VD+ WIG
Sbjct: 426 VDVANWIG 433


>sp|ENO_PYRFU|ENOLASE furiosus (strain ATCC 43587

Query: 1 VDILTWIGLG 10
VD+ T +G+G
Sbjct: 26 VDVYTHVGMG 35


>sp|SYE_METLZ|GLUTAMATE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 4 LTWIGLG 10
L W+G+G
Sbjct: 160 LAWLGIG 166


>sp|ARLY_PYRAE|ARGININOSUCCINATE lyase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 DILTWIGLG 10
+I W+GLG
Sbjct: 92 EIGGWVGLG 100


>sp|MDH_METKA|MALATE dehydrogenase|Methanopyrus kandleri (strain AV19 /

Query: 1 VDILTWIGL 9
VD+LT++ L
Sbjct: 125 VDVLTYVAL 133


>sp|SYE_METB6|GLUTAMATE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 4 LTWIGLG 10
+ W+GLG
Sbjct: 160 IAWMGLG 166


>sp|ARLY_SULAC|ARGININOSUCCINATE lyase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 6 WIGLG 10
W+GLG
Sbjct: 91 WVGLG 95


>sp|ARLY_PYRIL|ARGININOSUCCINATE lyase|Pyrobaculum islandicum (strain DSM 4184

Query: 6 WIGLG 10
W+GLG
Sbjct: 96 WVGLG 100


>sp|AATA_METTP|A-TYPE ATP synthase subunit A|Methanothrix thermoacetophila (strain DSM

Query: 1 VDILTWIGLG 10
VDI+ ++G G
Sbjct: 247 VDIVIYVGCG 256


>sp|SYH_PYRAB|HISTIDINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 VDILTW 6
VDIL+W
Sbjct: 248 VDILSW 253


>sp|HELS_PYRCJ|ATP-DEPENDENT DNA helicase Hel308|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 VDILTWIG 8
VD+ W+G
Sbjct: 600 VDLFQWLG 607


>sp|GMSS1_HALMA|GLUTAMATE mutase sigma subunit 1|Haloarcula marismortui (strain ATCC 43049

Query: 1 VDILTWIG 8
+D+LT++G
Sbjct: 87 LDVLTYVG 94


>sp|AATA_METVS|A-TYPE ATP synthase subunit A|Methanococcus vannielii (strain ATCC 35089

Query: 1 VDILTWIGLG 10
VD++ +IG G
Sbjct: 251 VDVVVYIGCG 260


>sp|AATA_METMP|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain DSM 14266

Query: 1 VDILTWIGLG 10
VD++ +IG G
Sbjct: 251 VDVVVYIGCG 260


>sp|AATA_METM6|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C6 /

Query: 1 VDILTWIGLG 10
VD++ +IG G
Sbjct: 251 VDVVVYIGCG 260


>sp|AATA_METM5|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C5 /

Query: 1 VDILTWIGLG 10
VD++ +IG G
Sbjct: 251 VDVVVYIGCG 260


>sp|AATA_METM7|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C7 /

Query: 1 VDILTWIGLG 10
VD++ +IG G
Sbjct: 251 VDVVVYIGCG 260


>sp|Y3408_METJA|UNCHARACTERIZED protein MJECS08|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VDILTWIGLG 10
+ + WIG+G
Sbjct: 736 IGVSPWIGVG 745




46|SequenceR|235|226|VGILLVDILT

>sp|TRUA_PYRAB|TRNA pseudouridine synthase A|Pyrococcus abyssi (strain GE5 /

Query: 2 GILLVDI 8
G+LLVDI
Sbjct: 215 GLLLVDI 221


>sp|RISC_AERPE|RIBOFLAVIN synthase|Aeropyrum pernix (strain ATCC 700893

Query: 1 VGILLVDILT 10
VG+++V++LT
Sbjct: 81 VGLIMVEVLT 90




47|SequenceR|240|231|PGVYGVGILL

>sp|RS3_SULTO|SMALL ribosomal subunit protein uS3|Sulfurisphaera tokodaii (strain DSM

Query: 1 PGVYGVGILL 10
PGVYGV IL+
Sbjct: 174 PGVYGVEILI 183


>sp|RS3_SULAC|SMALL ribosomal subunit protein uS3|Sulfolobus acidocaldarius (strain

Query: 1 PGVYGVGILL 10
PGVYGV +++
Sbjct: 174 PGVYGVEVVI 183


>sp|Y908_METJA|UNCHARACTERIZED protein MJ0908|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PGVYGVGI 8
PG YG G+
Sbjct: 1001 PGCYGAGV 1008


>sp|RTCB_METKA|TRNA-SPLICING ligase RtcB|Methanopyrus kandleri (strain AV19 /

Query: 1 PGVYGVGILL 10
PG+YG I L
Sbjct: 57 PGIYGYSIAL 66


>sp|CETZ5_HALVD|TUBULIN-LIKE protein CetZ5|Haloferax volcanii (strain ATCC 29605

Query: 3 VYGVGIL 9
+YGVGIL
Sbjct: 131 IYGVGIL 137


>sp|FENR_METS5|FERREDOXIN--NADP reductase|Metallosphaera sedula (strain ATCC 51363

Query: 1 PGVYGVG 7
PGVY VG
Sbjct: 275 PGVYAVG 281


>sp|FEN_IGNH4|FLAP endonuclease 1|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 PGVYGVG 7
PGV GVG
Sbjct: 243 PGVKGVG 249


>sp|RS3_PYRAR|SMALL ribosomal subunit protein uS3|Pyrobaculum arsenaticum (strain DSM

Query: 1 PGVYGVGI 8
PG+YG+ +
Sbjct: 183 PGIYGIEV 190


>sp|RS3_PYRAE|SMALL ribosomal subunit protein uS3|Pyrobaculum aerophilum (strain ATCC

Query: 1 PGVYGVGI 8
PG+YG+ +
Sbjct: 183 PGIYGIEV 190


>sp|CETZ6_HALVD|TUBULIN-LIKE protein CetZ6|Haloferax volcanii (strain ATCC 29605

Query: 3 VYGVGIL 9
VYGVGI
Sbjct: 131 VYGVGIF 137


>sp|RS3_PYRCJ|SMALL ribosomal subunit protein uS3|Pyrobaculum calidifontis (strain DSM

Query: 1 PGVYGVGI 8
PG+YG+ +
Sbjct: 183 PGIYGIEV 190


>sp|FEN_METST|FLAP endonuclease 1|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 GVYGVG 7
GVYG+G
Sbjct: 231 GVYGIG 236


>sp|ARGJ_METTH|GLUTAMATE N-acetyltransferase|Methanothermobacter thermautotrophicus

Query: 2 GVYGVGILL 10
G YGVG+++
Sbjct: 27 GKYGVGLII 35


>sp|RS3_PYRIL|SMALL ribosomal subunit protein uS3|Pyrobaculum islandicum (strain DSM

Query: 1 PGVYGVGI 8
PG+YG+ +
Sbjct: 183 PGIYGIEV 190


>sp|RS3_SACS2|SMALL ribosomal subunit protein uS3|Saccharolobus solfataricus (strain

Query: 1 PGVYGVGILL 10
PG++GV +++
Sbjct: 174 PGIFGVEVVI 183


>sp|CSG_HALSA|CELL surface glycoprotein|Halobacterium salinarum (strain ATCC 700922

Query: 1 PGVYGVGIL 9
PG Y +GI+
Sbjct: 498 PGTYRLGII 506


>sp|CSG_HALS3|CELL surface glycoprotein|Halobacterium salinarum (strain ATCC 29341

Query: 1 PGVYGVGIL 9
PG Y +GI+
Sbjct: 498 PGTYRLGII 506


>sp|TRPB_PICTO|TRYPTOPHAN synthase beta chain|Picrophilus torridus (strain ATCC 700027

Query: 1 PGVYGVGI 8
PG G+GI
Sbjct: 204 PGTLGIGI 211


>sp|FEN_METMJ|FLAP endonuclease 1|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 PGVYGVG 7
PG+ GVG
Sbjct: 238 PGIRGVG 244


>sp|FPRA_METJA|COENZYME F420H(2) oxidase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GVYGVGIL 9
GVY VG+L
Sbjct: 14 GVYWVGVL 21


>sp|CSG_HALJT|CELL surface glycoprotein|Haloarcula japonica (strain ATCC 49778

Query: 1 PGVYGVGIL 9
PG Y +G++
Sbjct: 502 PGTYRIGVV 510


>sp|FEN_PICTO|FLAP endonuclease 1|Picrophilus torridus (strain ATCC 700027

Query: 1 PGVYGVG 7
PGV G+G
Sbjct: 239 PGVKGIG 245


>sp|SPSS2_METLZ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 GVYGVGIL 9
GVY VG+L
Sbjct: 191 GVYTVGVL 198


>sp|CBIH_METTH|PROBABLE cobalt-factor III C(17)-methyltransferase|Methanothermobacter

Query: 1 PGVYGVG 7
PGVYG+
Sbjct: 80 PGVYGMA 86


>sp|DAPB_METB6|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanoregula boonei (strain DSM 21154

Query: 1 PGVYGVGILL 10
PG+YG+ +L
Sbjct: 241 PGIYGMNDVL 250


>sp|SPSS1_METLZ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 1|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 GVYGVGIL 9
GVY VGI+
Sbjct: 191 GVYTVGIM 198


>sp|LEUC_CALMQ|3-ISOPROPYLMALATE dehydratase large subunit|Caldivirga maquilingensis (strain ATCC

Query: 1 PGVYGVGILL 10
PGVYG + L
Sbjct: 168 PGVYGKDVAL 177


>sp|CSG_HALMA|CELL surface glycoprotein|Haloarcula marismortui (strain ATCC 43049

Query: 1 PGVYGVGIL 9
PG Y +G++
Sbjct: 515 PGSYRIGVI 523


>sp|CETZ1_HALVD|TUBULIN-LIKE protein CetZ1|Haloferax volcanii (strain ATCC 29605

Query: 3 VYGVGIL 9
VYG+GIL
Sbjct: 131 VYGLGIL 137


>sp|CETZ4_HALVD|TUBULIN-LIKE protein CetZ4|Haloferax volcanii (strain ATCC 29605

Query: 3 VYGVGIL 9
VYG+GIL
Sbjct: 131 VYGLGIL 137


>sp|FEN_METPE|FLAP endonuclease 1|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 PGVYGVG 7
PG+ GVG
Sbjct: 238 PGIRGVG 244


>sp|TOP6B_SULTO|TYPE 2 DNA topoisomerase 6|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 105 GMYGLGV 111


>sp|TOP6B_SACSH|TYPE 2 DNA topoisomerase 6|Saccharolobus shibatae (strain ATCC 51178

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 106 GMYGLGV 112


>sp|TOP6B_SACS2|TYPE 2 DNA topoisomerase 6|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 106 GMYGLGV 112


>sp|TOP6B_SACI7|TYPE 2 DNA topoisomerase 6|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 106 GMYGLGV 112


>sp|TOP6B_SACI6|TYPE 2 DNA topoisomerase 6|Saccharolobus islandicus (strain M.16.4 /

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 106 GMYGLGV 112


>sp|TOP6B_SACI4|TYPE 2 DNA topoisomerase 6|Saccharolobus islandicus (strain M.14.25 /

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 106 GMYGLGV 112


>sp|TOP6B_SACI3|TYPE 2 DNA topoisomerase 6|Saccharolobus islandicus (strain M.16.27)

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 106 GMYGLGV 112


>sp|TOP6B_SACI2|TYPE 2 DNA topoisomerase 6|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 106 GMYGLGV 112


>sp|TOP6B_SACI1|TYPE 2 DNA topoisomerase 6|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 106 GMYGLGV 112


>sp|TOP6B_METS5|TYPE 2 DNA topoisomerase 6|Metallosphaera sedula (strain ATCC 51363

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 106 GMYGLGV 112


>sp|GCSPA_SULAC|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Sulfolobus

Query: 1 PGVYGVGI 8
PG YG+ I
Sbjct: 256 PGEYGIDI 263


>sp|CETZ3_HALVD|TUBULIN-LIKE protein CetZ3|Haloferax volcanii (strain ATCC 29605

Query: 3 VYGVGIL 9
VYG+GIL
Sbjct: 131 VYGLGIL 137


>sp|Y719_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 1 PGVYGVG 7
PG +GVG
Sbjct: 540 PGKFGVG 546


>sp|FPRA_METAZ|COENZYME F420H(2) oxidase|Methanobrevibacter arboriphilus

Query: 2 GVYGVGIL 9
GVY +G+L
Sbjct: 11 GVYWIGVL 18


>sp|PUR2_METVS|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 PGVYGV 6
PG+YG+
Sbjct: 36 PGIYGL 41


>sp|AATI_PYRHO|A-TYPE ATP synthase subunit I|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GVYGVGILL 10
G++G+G++L
Sbjct: 522 GIFGIGLIL 530


>sp|TOP6B_AERPE|TYPE 2 DNA topoisomerase 6|Aeropyrum pernix (strain ATCC 700893

Query: 2 GVYGVGI 8
G+YG+G+
Sbjct: 132 GMYGLGV 138




48|SequenceR|247|236|IYLSGDAPGVYG

>sp|GGPS_SULAC|GERANYLGERANYL diphosphate synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 YLSGDAPGVY 11
Y+SGD P +Y
Sbjct: 22 YISGDVPKLY 31


>sp|SYFB_METLZ|PHENYLALANINE--TRNA ligase beta subunit|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 IYLSGDAPGVYG 12
IY+SG+ GV+G
Sbjct: 499 IYVSGEKIGVFG 510


>sp|ILVD_NATPD|DIHYDROXY-ACID dehydratase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 LSGDAPGVYG 12
L GD PG YG
Sbjct: 13 LDGDEPGAYG 22


>sp|Y941_METKA|UNCHARACTERIZED methyltransferase MK0941|Methanopyrus kandleri (strain AV19 /

Query: 1 IYLSGDAPG 9
I LSGD PG
Sbjct: 5 IALSGDVPG 13


>sp|TRM56_METMJ|TRNA (cytidine(56)-2'-O)-methyltransferase|Methanoculleus marisnigri

Query: 1 IYLSGDAPGV 10
+YL+ D PGV
Sbjct: 35 MYLAADDPGV 44


>sp|ACYP_METBU|ACYLPHOSPHATASE burtonii (strain DSM 6242

Query: 1 IYLSGDAPGVY 11
IY+SG GVY
Sbjct: 12 IYVSGRVQGVY 22


>sp|CARB_SULTO|CARBAMOYL phosphate synthase large chain|Sulfurisphaera tokodaii (strain DSM

Query: 4 SGDAPGVYG 12
+GD GVYG
Sbjct: 762 AGDGKGVYG 770


>sp|MDH_METST|MALATE dehydrogenase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 YLSGDAPGVY 11
YL G+ GVY
Sbjct: 256 YLEGEVEGVY 265


>sp|DAPB_METB6|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanoregula boonei (strain DSM 21154

Query: 2 YLSGDAPGVYG 12
++ G PG+YG
Sbjct: 235 WVVGKKPGIYG 245


>sp|HYD1A_PYRFU|SULFHYDROGENASE 1 subunit alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 5 GDAPGVYG 12
GDA G+YG
Sbjct: 221 GDAYGIYG 228


>sp|DAPF_META3|DIAMINOPIMELATE epimerase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 IYLSGDAPGVY 11
+Y+ GDA VY
Sbjct: 278 VYMEGDAVIVY 288


>sp|MTD_METVS|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanococcus

Query: 5 GDAPGV 10
GDAPG+
Sbjct: 93 GDAPGI 98


>sp|CDC6G_HALMA|ORC1-TYPE DNA replication protein 7|Haloarcula marismortui (strain ATCC 43049

Query: 2 YLSGDAPGVYG 12
YLS PGV G
Sbjct: 169 YLSEAKPGVIG 179


>sp|ACYP_NATPD|ACYLPHOSPHATASE pharaonis (strain ATCC 35678

Query: 1 IYLSGDAPGVY 11
+Y+SG GVY
Sbjct: 9 VYVSGRVQGVY 19


>sp|Y1164_METJA|PUTATIVE HTH-type transcriptional regulatory protein|Methanocaldococcus

Query: 2 YLSGDAPGVYG 12
YL G P VY
Sbjct: 107 YLEGSPPMVYA 117


>sp|CARB_THEAC|CARBAMOYL phosphate synthase large chain|Thermoplasma acidophilum (strain

Query: 4 SGDAPGVYG 12
SGDA VYG
Sbjct: 773 SGDATMVYG 781


>sp|MTD_METM5|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanococcus

Query: 5 GDAPGV 10
GDAPG+
Sbjct: 94 GDAPGI 99


>sp|MTD_META3|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanococcus

Query: 5 GDAPGV 10
GDAPG+
Sbjct: 94 GDAPGI 99


>sp|DAPB_METHJ|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 YLSGDAPGVYG 12
++ G PG+YG
Sbjct: 236 WVFGKEPGIYG 246


>sp|MTD_METMP|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanococcus

Query: 5 GDAPGV 10
GDAPG+
Sbjct: 94 GDAPGI 99


>sp|MTD_METM7|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanococcus

Query: 5 GDAPGV 10
GDAPG+
Sbjct: 94 GDAPGI 99


>sp|EF2_THEVO|ELONGATION factor 2|Thermoplasma volcanium (strain ATCC 51530

Query: 1 IYLSGDAPG 9
+Y+SGD G
Sbjct: 324 LYISGDGKG 332


>sp|SYFB_METBF|PHENYLALANINE--TRNA ligase beta subunit|Methanosarcina barkeri (strain Fusaro /

Query: 1 IYLSGDAPGVYG 12
+Y++G GV+G
Sbjct: 503 VYVNGKKLGVFG 514


>sp|Y823_METJA|UNCHARACTERIZED ATP-binding protein MJ0823|Methanocaldococcus jannaschii (strain

Query: 4 SGDAPGVYG 12
+G PG YG
Sbjct: 66 TGAKPGTYG 74


>sp|AROD_METHJ|3-DEHYDROQUINATE dehydratase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 SGDAPGVY 11
SGDA G Y
Sbjct: 237 SGDASGYY 244


>sp|HDRB_METTM|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 7 APGVYG 12
APGV+G
Sbjct: 44 APGVFG 49


>sp|HDRB_METTH|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 7 APGVYG 12
APGV+G
Sbjct: 44 APGVFG 49


>sp|HDRB_METKA|COB--COM heterodisulfide reductase subunit B|Methanopyrus kandleri (strain

Query: 7 APGVYG 12
APGV+G
Sbjct: 46 APGVFG 51


>sp|HDRB1_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 7 APGVYG 12
APGV+G
Sbjct: 44 APGVFG 49


>sp|SYFB_METMA|PHENYLALANINE--TRNA ligase beta subunit|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 IYLSGDAPGVYG 12
+Y++G GV+G
Sbjct: 503 VYVNGKKLGVFG 514


>sp|MTD_METKA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanopyrus

Query: 5 GDAPGV 10
GDAPG+
Sbjct: 98 GDAPGL 103


>sp|MTD_METJA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanocaldococcus

Query: 5 GDAPGV 10
GDAPG+
Sbjct: 94 GDAPGL 99


>sp|SYFB_METAC|PHENYLALANINE--TRNA ligase beta subunit|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 IYLSGDAPGVYG 12
+Y++G GV+G
Sbjct: 503 VYVNGKKLGVFG 514


>sp|Y908_METJA|UNCHARACTERIZED protein MJ0908|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 6 DAPGVYG 12
D PG YG
Sbjct: 999 DKPGCYG 1005


>sp|Y210_METM6|PUTATIVE HTH-type transcriptional regulatory protein|Methanococcus

Query: 3 LSGDAPGVYG 12
LSG+ P VY
Sbjct: 105 LSGEPPVVYA 114


>sp|Y1702_METM7|PUTATIVE HTH-type transcriptional regulatory protein|Methanococcus

Query: 3 LSGDAPGVYG 12
LSG+ P VY
Sbjct: 105 LSGEPPVVYA 114


>sp|DAPF_METJA|DIAMINOPIMELATE epimerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 IYLSGDAPGVY 11
+Y+ GDA VY
Sbjct: 276 VYMIGDAVMVY 286


>sp|LEUC_CALMQ|3-ISOPROPYLMALATE dehydratase large subunit|Caldivirga maquilingensis (strain ATCC

Query: 7 APGVYG 12
APGVYG
Sbjct: 167 APGVYG 172


>sp|CBIHC_ARCFU|COBALAMIN biosynthesis protein CbiHC|Archaeoglobus fulgidus (strain ATCC

Query: 3 LSGDAPGVYG 12
+SG P +YG
Sbjct: 83 ISGGDPSIYG 92


>sp|HDRB2_METJA|COB--COM heterodisulfide reductase subunit B|Methanocaldococcus jannaschii

Query: 7 APGVYG 12
APGV+G
Sbjct: 44 APGVFG 49


>sp|CARA_SULAC|CARBAMOYL phosphate synthase small chain|Sulfolobus acidocaldarius (strain

Query: 3 LSGDAPGVYG 12
LS PGVYG
Sbjct: 115 LSEGIPGVYG 124


>sp|SRP54_METS3|SIGNAL recognition particle 54 kDa|Methanobrevibacter smithii (strain

Query: 3 LSGDAPGV 10
L G+APG+
Sbjct: 86 LGGEAPGL 93


>sp|HDRB1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B1|Methanococcus

Query: 7 APGVYG 12
APGV+G
Sbjct: 49 APGVFG 54


>sp|PCNA3_SULTO|DNA polymerase sliding clamp 3|Sulfurisphaera tokodaii (strain DSM

Query: 5 GDAPGVYG 12
GDA VYG
Sbjct: 191 GDAESVYG 198


>sp|HDRB2_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit B2|Methanococcus

Query: 7 APGVYG 12
APGV+G
Sbjct: 44 APGVFG 49


>sp|RS3_SULTO|SMALL ribosomal subunit protein uS3|Sulfurisphaera tokodaii (strain DSM

Query: 8 PGVYG 12
PGVYG
Sbjct: 174 PGVYG 178


>sp|GCH1L_METJA|GTP cyclohydrolase 1 type 2|Methanocaldococcus jannaschii (strain ATCC

Query: 1 IYLSGD 6
+YLSGD
Sbjct: 190 VYLSGD 195


>sp|ACYP_ARCFU|ACYLPHOSPHATASE fulgidus (strain ATCC 49558

Query: 1 IYLSGDAPGV 10
IY+SG+ GV
Sbjct: 6 IYVSGNVQGV 15


>sp|RS3_SULAC|SMALL ribosomal subunit protein uS3|Sulfolobus acidocaldarius (strain

Query: 8 PGVYG 12
PGVYG
Sbjct: 174 PGVYG 178


>sp|HMU_HALWD|HALOMUCIN walsbyi (strain DSM 16790

Query: 1 IYLSGDAPGV 10
I LSG PGV
Sbjct: 90 IDLSGSEPGV 99


>sp|ACYP_HALMA|ACYLPHOSPHATASE marismortui (strain ATCC 43049

Query: 1 IYLSGDAPGVY 11
+++SG GVY
Sbjct: 8 VFVSGRVQGVY 18


>sp|MTD_METTM|F420-DEPENDENT methylenetetrahydromethanopterin

Query: 5 GDAPGV 10
GDAPG+
Sbjct: 93 GDAPGL 98


>sp|MTD_METTH|F420-DEPENDENT methylenetetrahydromethanopterin

Query: 5 GDAPGV 10
GDAPG+
Sbjct: 93 GDAPGL 98


>sp|MRE11_AERPE|DNA double-strand break repair protein|Aeropyrum pernix (strain ATCC

Query: 1 IYLSGDAP 8
+ LSGDAP
Sbjct: 236 VDLSGDAP 243


>sp|PPSA_STAMF|PROBABLE phosphoenolpyruvate synthase|Staphylothermus marinus (strain ATCC

Query: 1 IYLSGDAPGVY 11
+ + G AP VY
Sbjct: 769 VSICGQAPSVY 779


>sp|MCM_SULAC|MINICHROMOSOME maintenance protein MCM|Sulfolobus acidocaldarius (strain ATCC

Query: 3 LSGDAPGVYG 12
+S AP +YG
Sbjct: 295 ISSIAPSIYG 304


>sp|MCM_SACS2|MINICHROMOSOME maintenance protein MCM|Saccharolobus solfataricus (strain ATCC

Query: 3 LSGDAPGVYG 12
+S AP +YG
Sbjct: 296 ISSIAPSIYG 305


>sp|CBIH_METTH|PROBABLE cobalt-factor III C(17)-methyltransferase|Methanothermobacter

Query: 4 SGDAPGVYG 12
SGD PGVYG
Sbjct: 77 SGD-PGVYG 84


>sp|Y555_METJA|PUTATIVE aminopeptidase MJ0555|Methanocaldococcus jannaschii (strain ATCC

Query: 1 IYLSGDAPGV 10
+ ++GD PG+
Sbjct: 231 VTIAGDHPGI 240




THE END