PSA_HUMAN Blast OutputR
Archaea
1|SequenceR|10|1|LSPAAAALWM

>sp|COBS_PYRCJ|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 SPAAAALWM 10
PAAAALW+
Sbjct: 39 GPAAAALWL 47


>sp|PTH_METVS|PEPTIDYL-TRNA hydrolase|Methanococcus vannielii (strain ATCC 35089

Query: 1 LSPAAAALWM 10
+SP+A WM
Sbjct: 37 ISPSAVMYWM 46


>sp|GLYA_METS5|SERINE hydroxymethyltransferase|Metallosphaera sedula (strain ATCC 51363

Query: 1 LSPAAAALWM 10
+SP A AL+M
Sbjct: 35 MSPLAEALYM 44




2|SequenceR|15|6|LLRRALSPAA

>sp|Y1087_PYRFU|DNA-BINDING protein PF1087|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LLRRALSPAA 10
+LRR L+P A
Sbjct: 44 ILRRILTPEA 53


>sp|Y1619_METKA|DNA-BINDING protein MK1619|Methanopyrus kandleri (strain AV19 /

Query: 1 LLRRALSPAA 10
+LRR L+P A
Sbjct: 46 MLRRILTPEA 55


>sp|Y471_THEPD|DNA-BINDING protein Tpen_0471|Thermofilum pendens (strain DSM 2475

Query: 1 LLRRALSPAA 10
+LRR L+P A
Sbjct: 45 ILRRILTPEA 54


>sp|RS4E_PYRAE|SMALL ribosomal subunit protein eS4|Pyrobaculum aerophilum (strain ATCC

Query: 2 LRRALSPA 9
LRR L+PA
Sbjct: 4 LRRTLAPA 11


>sp|KAE1_PYRAB|TRNA N6-adenosine threonylcarbamoyltransferase|Pyrococcus abyssi

Query: 1 LLRRALSPAA 10
LLR+ALS A
Sbjct: 54 LLRKALSEAG 63


>sp|RRP41_PYRIL|EXOSOME complex component Rrp41|Pyrobaculum islandicum (strain DSM 4184

Query: 1 LLRRALSPA 9
+LR AL PA
Sbjct: 102 ILREALEPA 110


>sp|RRP41_PYRAE|EXOSOME complex component Rrp41|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 LLRRALSPA 9
+LR AL PA
Sbjct: 102 ILREALEPA 110




3|SequenceR|20|11|PPGLFLLRRA

>sp|FLPA_METTP|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanothrix thermoacetophila

Query: 2 PGLFLLRR 9
PGL++LRR
Sbjct: 6 PGLYILRR 13


>sp|SLAA_SULAC|S-LAYER protein A|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PPGLFLL 7
P GLFLL
Sbjct: 1233 PAGLFLL 1239


>sp|Y367_PYRAB|PUTATIVE HTH-type transcriptional regulatory protein|Pyrococcus abyssi

Query: 3 GLFLLRRA 10
G+F+L+RA
Sbjct: 272 GMFVLKRA 279


>sp|GLMS_AERPE|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Aeropyrum pernix (strain ATCC

Query: 1 PPGLFLLRRA 10
PPG ++R+A
Sbjct: 41 PPGRLVVRKA 50




4|SequenceR|25|16|LLPPPPPGLF

>sp|TRUA_THESM|TRNA pseudouridine synthase A|Thermococcus sibiricus (strain DSM 12597

Query: 2 LPPPPP 7
LPP PP
Sbjct: 211 LPPAPP 216


>sp|PGK2_METTH|2-PHOSPHOGLYCERATE kinase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 PPPPGL 9
PPPP L
Sbjct: 156 PPPPEL 161


Query: 2 LPPPP 6
+PPPP
Sbjct: 155 IPPPP 159


>sp|PANB_HYPBU|3-METHYL-2-OXOBUTANOATE hydroxymethyltransferase|Hyperthermus butylicus (strain DSM 5456

Query: 1 LLPPPPP 7
L P PPP
Sbjct: 225 LTPTPPP 231


>sp|CAS4_AERPE|CRISPR-ASSOCIATED exonuclease Cas4|Aeropyrum pernix (strain ATCC 700893

Query: 1 LLPPPPPG 8
L PPP PG
Sbjct: 169 LEPPPKPG 176


>sp|Y856_METTH|METALLOPROTEASE MTH_856|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 PPPPGLF 10
PPP G F
Sbjct: 220 PPPSGRF 226


>sp|SRP54_HYPBU|SIGNAL recognition particle 54 kDa|Hyperthermus butylicus (strain DSM

Query: 5 PPPGL 9
PPPGL
Sbjct: 62 PPPGL 66


>sp|Y939_SULTO|KELCH domain-containing protein STK_09390|Sulfurisphaera tokodaii (strain

Query: 2 LPPPPP 7
LPPP P
Sbjct: 314 LPPPKP 319


>sp|REP75_PYRAB|REPLICATION initiator protein|Pyrococcus abyssi (strain GE5 /

Query: 1 LLPPPPPGL 9
L+PPP G+
Sbjct: 644 LIPPPDGGV 652


>sp|DNAK_METBU|CHAPERONE protein DnaK|Methanococcoides burtonii (strain DSM 6242

Query: 2 LPPPPPGL 9
+PP P GL
Sbjct: 436 IPPAPRGL 443


>sp|HEM3_PYRAR|PROBABLE porphobilinogen deaminase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 4 PPPPG 8
PPPPG
Sbjct: 192 PPPPG 196


Query: 1 LLPPPP 6
+LPPPP
Sbjct: 190 VLPPPP 195


>sp|HEM3_PYRIL|PROBABLE porphobilinogen deaminase|Pyrobaculum islandicum (strain DSM 4184

Query: 4 PPPPG 8
PPPPG
Sbjct: 192 PPPPG 196


>sp|Y1446_ARCFU|UNCHARACTERIZED protein AF_1446|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 LPPPPPGLF 10
LPP PP F
Sbjct: 80 LPPWPPVTF 88


>sp|IORA_PYRHO|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus horikoshii (strain ATCC

Query: 1 LLPPPPPGL 9
++PP PP L
Sbjct: 376 MVPPRPPSL 384


>sp|IORA_PYRAB|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus abyssi (strain GE5 /

Query: 1 LLPPPPPGL 9
++PP PP L
Sbjct: 376 IVPPRPPSL 384


>sp|EF2_AERPE|ELONGATION factor 2|Aeropyrum pernix (strain ATCC 700893

Query: 2 LPPPPP 7
LPP PP
Sbjct: 723 LPPSPP 728


>sp|PCKA_AERPE|PHOSPHOENOLPYRUVATE carboxykinase (ATP)|Aeropyrum pernix (strain ATCC 700893

Query: 5 PPPGLF 10
PPPGL
Sbjct: 22 PPPGLL 27


>sp|HEM3_PYRNV|PROBABLE porphobilinogen deaminase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 4 PPPPG 8
PPPPG
Sbjct: 192 PPPPG 196


>sp|IORA_THEKO|INDOLEPYRUVATE oxidoreductase subunit IorA|Thermococcus kodakarensis (strain ATCC

Query: 1 LLPPPPPGL 9
++PP PP L
Sbjct: 376 IVPPRPPSL 384


>sp|DNAK_CENSY|CHAPERONE protein DnaK|Cenarchaeum symbiosum (strain A)

Query: 2 LPPPPPGL 9
LPP P G+
Sbjct: 439 LPPAPRGI 446


>sp|AROB_AERPE|3-DEHYDROQUINATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 5 PPPGL 9
PPPGL
Sbjct: 303 PPPGL 307


>sp|AMID_SACS2|AMIDASE solfataricus (strain ATCC 35092

Query: 2 LPPPP 6
LPPPP
Sbjct: 261 LPPPP 265


>sp|EF2_IGNH4|ELONGATION factor 2|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 LPPPPP 7
LPP PP
Sbjct: 727 LPPEPP 732




5|SequenceR|30|21|SFVLLLLPPP

>sp|Y819_PYRHO|UNCHARACTERIZED methyltransferase PH0819|Pyrococcus horikoshii (strain ATCC

Query: 3 VLLLLPP 9
+LL+LPP
Sbjct: 6 ILLVLPP 12




6|SequenceR|35|26|RRSSRSFVLL

***** No hits found ******


7|SequenceR|40|31|LSHLRRRSSR

>sp|RPO2_THECE|DNA-DIRECTED RNA polymerase subunit Rpo2|Thermococcus celer

Query: 1 LSHLRRRSS 9
LSHLRR +S
Sbjct: 435 LSHLRRVTS 443


>sp|UVRC_METBU|UVRABC system protein C|Methanococcoides burtonii (strain DSM 6242

Query: 2 SHLRRRSSR 10
SH RRR++R
Sbjct: 532 SHRRRRTAR 540


>sp|RPO2_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo2|Sulfolobus acidocaldarius (strain ATCC

Query: 1 LSHLRR 6
LSHLRR
Sbjct: 421 LSHLRR 426


>sp|RPO2_SACS2|DNA-DIRECTED RNA polymerase subunit Rpo2|Saccharolobus solfataricus (strain ATCC

Query: 1 LSHLRR 6
LSHLRR
Sbjct: 423 LSHLRR 428


>sp|RPO2_SACSH|DNA-DIRECTED RNA polymerase subunit Rpo2|Saccharolobus shibatae (strain ATCC

Query: 1 LSHLRR 6
LSHLRR
Sbjct: 423 LSHLRR 428




8|SequenceR|45|36|MAALGLSHLR

>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 1 MAALGLSHL 9
+ ALGL HL
Sbjct: 92 LVALGLEHL 100


>sp|Y2030_SACS2|PUTATIVE ABC transporter ATP-binding protein|Saccharolobus solfataricus

Query: 1 MAALGLSHLR 10
M G+SHLR
Sbjct: 128 MKIYGISHLR 137


>sp|Y1893_SACS2|PUTATIVE ABC transporter ATP-binding protein|Saccharolobus solfataricus

Query: 1 MAALGLSHLR 10
M G+SHLR
Sbjct: 128 MKICGISHLR 137


>sp|TRUD_PYRAE|PROBABLE tRNA pseudouridine synthase D|Pyrobaculum aerophilum (strain ATCC

Query: 3 ALGLSH 8
ALGLSH
Sbjct: 82 ALGLSH 87




9|SequenceR|50|41|PRKEPMAALG

>sp|SYP_HALLT|PROLINE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 PRKEPMAA 8
P KEPMAA
Sbjct: 445 PIKEPMAA 452


>sp|MCH_HALMA|MESACONYL-COA hydratase|Haloarcula marismortui (strain ATCC 43049

Query: 1 PRKEPMAALG 10
PR+EP A G
Sbjct: 174 PRREPAATDG 183


>sp|MCH_HALHT|MESACONYL-COA hydratase|Haloarcula hispanica (strain ATCC 33960

Query: 1 PRKEPMAALG 10
PR+EP A G
Sbjct: 174 PRREPAATDG 183


>sp|SYH_METMJ|HISTIDINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 4 EPMAALG 10
EP+AALG
Sbjct: 204 EPLAALG 210




10|SequenceR|55|46|PLREFPRKEP

>sp|PYRC_HALSA|DIHYDROOROTASE salinarum (strain ATCC 700922

Query: 1 PLREFPRKE 9
PLR PR+E
Sbjct: 266 PLRSDPRRE 274


>sp|NCSA_HALVD|TRNA 2-thiolation protein NcsA|Haloferax volcanii (strain ATCC 29605

Query: 1 PLREFPRKE 9
PLR+ P KE
Sbjct: 217 PLRDVPEKE 225


>sp|UPPP_METBU|UNDECAPRENYL-DIPHOSPHATASE burtonii (strain DSM 6242

Query: 2 LREFPRKEP 10
+R F RK+P
Sbjct: 77 VRSFSRKQP 85


>sp|SYR_KORCO|ARGININE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 2 LREFPRKE 9
LRE+ RKE
Sbjct: 254 LREYQRKE 261


>sp|RL22_CALMQ|LARGE ribosomal subunit protein uL22|Caldivirga maquilingensis (strain

Query: 1 PLREFPRKE 9
P++EF RK+
Sbjct: 73 PIKEFTRKQ 81


>sp|SYK_HALSA|LYSINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 PLREFPRK 8
PLR PRK
Sbjct: 83 PLRGLPRK 90


>sp|RGYR_THEKO|REVERSE gyrase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PLREFPRKE 9
PLRE P+ E
Sbjct: 1580 PLRELPKLE 1588


>sp|Y329_METJA|UNCHARACTERIZED protein MJ0329|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LREFPRKE 9
LREF R+E
Sbjct: 455 LREFTREE 462


>sp|TRM4_METJA|TRNA (cytosine(48)-C(5))-methyltransferase|Methanocaldococcus jannaschii

Query: 2 LREFPRKEP 10
LR FP EP
Sbjct: 257 LRVFPPNEP 265




11|SequenceR|60|51|PSVDAPLREF

>sp|AGL16_SULAC|ARCHAEAL glycosylation protein 16|Sulfolobus acidocaldarius (strain ATCC

Query: 1 PSVDAPL 7
PSV+APL
Sbjct: 101 PSVEAPL 107


>sp|RBL_METJA|RIBULOSE bisphosphate carboxylase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PSVDAPLRE 9
P++ AP RE
Sbjct: 218 PNITAPYRE 226


>sp|CCA_HALLT|CCA-ADDING enzyme|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 PSVDAPLREF 10
P+ PLREF
Sbjct: 448 PAFGVPLREF 457


>sp|SYV_METKA|VALINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 4 DAPLREF 10
DAP REF
Sbjct: 105 DAPRREF 111


>sp|DNLI_METAR|DNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 SVDAPLRE 9
++D PLRE
Sbjct: 352 TIDLPLRE 359


>sp|NEP1_ARCFU|RIBOSOMAL RNA small subunit methyltransferase|Archaeoglobus fulgidus

Query: 4 DAPLREF 10
D+PLR+F
Sbjct: 74 DSPLRDF 80


>sp|PIMT_METBU|PROTEIN-L-ISOASPARTATE O-methyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PSVDAPLRE 9
P V PLRE
Sbjct: 146 PEVPPPLRE 154




12|SequenceR|65|56|LSYNIPSVDA

>sp|RADA_HALSA|DNA repair and recombination protein|Halobacterium salinarum (strain

Query: 1 LSYNIPSVD 9
L++NIP VD
Sbjct: 82 LTWNIPEVD 90


>sp|RADA_HALS3|DNA repair and recombination protein|Halobacterium salinarum (strain

Query: 1 LSYNIPSVD 9
L++NIP VD
Sbjct: 82 LTWNIPEVD 90


>sp|COBQ_ARCFU|PROBABLE cobyric acid synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LSYNIPSVDA 10
L YN PS D+
Sbjct: 227 LDYNFPSEDS 236


>sp|CSA2A_SACS2|CRISPR-ASSOCIATED protein Cas7/Csa2 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LSYNIPSVDA 10
SY +P++DA
Sbjct: 143 FSYMVPAIDA 152


>sp|SYM_SULAC|METHIONINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 YNIPSVDA 10
YN+PSV A
Sbjct: 315 YNLPSVIA 322


>sp|GLME_HALMA|GLUTAMATE mutase epsilon subunit|Haloarcula marismortui (strain ATCC 43049

Query: 1 LSYNIP 6
+SYNIP
Sbjct: 171 ISYNIP 176


>sp|Y1470_META3|UNCHARACTERIZED solute-binding protein Maeo_1470|Methanococcus aeolicus (strain

Query: 1 LSYNIPSV 8
L YNIP++
Sbjct: 176 LHYNIPTI 183


>sp|THS3_HALVD|CHAPERONIN subunit CTT3|Haloferax volcanii (strain ATCC 29605

Query: 3 YNIPSVD 9
YNI SVD
Sbjct: 255 YNITSVD 261


>sp|DAPA_METS3|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 LSYNIPS 7
++YN+PS
Sbjct: 132 IAYNVPS 138


>sp|Y1674_METJA|CRISPR-ASSOCIATED protein MJ1674|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 YNIPSV 8
YN+PSV
Sbjct: 346 YNLPSV 351




13|SequenceR|70|61|DPKLCLSYNI

>sp|SYP_PICTO|PROLINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 3 KLCLSYNI 10
KLCL YNI
Sbjct: 184 KLCLPYNI 191


>sp|RS6E_METLZ|SMALL ribosomal subunit protein eS6|Methanocorpusculum labreanum

Query: 1 DPKLCLSYNI 10
DPK LSY I
Sbjct: 10 DPKTGLSYKI 19


>sp|T2M5_METJA|TYPE II restriction enzyme MjaV|Methanocaldococcus jannaschii (strain

Query: 2 PKLCLSYNI 10
P LCLS+ I
Sbjct: 174 PHLCLSFKI 182


>sp|PHS_SULAC|PUTATIVE pterin-4-alpha-carbinolamine dehydratase|Sulfolobus

Query: 2 PKLCLSYN 9
P LC+ YN
Sbjct: 55 PDLCVYYN 62


>sp|PHS_METS5|PUTATIVE pterin-4-alpha-carbinolamine dehydratase|Metallosphaera sedula

Query: 2 PKLCLSYN 9
P LC+ YN
Sbjct: 56 PDLCVYYN 63


>sp|SYDND_META3|ASPARTATE--TRNA(ASP/ASN) ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 DPKLCLSYNI 10
+PKLC ++++
Sbjct: 346 NPKLCKAFDL 355


>sp|R1PKD_THEKO|ADP-DEPENDENT ribose-1-phosphate kinase|Thermococcus kodakarensis (strain ATCC

Query: 1 DPKLCLSYNI 10
DP LC + N+
Sbjct: 188 DPSLCRAKNL 197


>sp|Y208_METBF|UPF0285 protein Mbar_A0208|Methanosarcina barkeri (strain Fusaro /

Query: 4 LCLSYN 9
LCL YN
Sbjct: 145 LCLGYN 150


>sp|EF2_THEVO|ELONGATION factor 2|Thermoplasma volcanium (strain ATCC 51530

Query: 1 DPKLCLSYNI 10
DPK SY I
Sbjct: 258 DPKTAQSYRI 267


>sp|EF2_THEAC|ELONGATION factor 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 DPKLCLSYNI 10
DPK SY I
Sbjct: 258 DPKTAQSYRI 267


>sp|TOP3_SACS2|DNA topoisomerase 3|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 PKLCLSYNI 10
P LC YN+
Sbjct: 31 PILCRKYNV 39




14|SequenceR|75|66|TFDLLDPKLC

>sp|PAN1_HALVD|PROTEASOME-ACTIVATING nucleotidase 1|Haloferax volcanii (strain ATCC 29605

Query: 2 FDLLDPKL 9
FD+LDP +
Sbjct: 299 FDMLDPAI 306


>sp|CDC61_SACS2|ORC1-TYPE DNA replication protein 1|Saccharolobus solfataricus (strain ATCC

Query: 3 DLLDPKL 9
DLLDP++
Sbjct: 188 DLLDPRV 194


>sp|R1PKD_THEKO|ADP-DEPENDENT ribose-1-phosphate kinase|Thermococcus kodakarensis (strain ATCC

Query: 5 LDPKLC 10
LDP LC
Sbjct: 187 LDPSLC 192


>sp|Y907_METJA|UNCHARACTERIZED protein MJ0907|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 TFDLLDPK 8
+FDLL PK
Sbjct: 180 SFDLLKPK 187


>sp|SYM_THEAC|METHIONINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 DLLDPK 8
DL+DPK
Sbjct: 169 DLIDPK 174


>sp|SYM_KORCO|METHIONINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 3 DLLDPK 8
DL+DPK
Sbjct: 165 DLIDPK 170


>sp|KPRS_METTH|RIBOSE-PHOSPHATE pyrophosphokinase|Methanothermobacter thermautotrophicus (strain

Query: 3 DLLDPKLC 10
DLLD LC
Sbjct: 17 DLLDEPLC 24


>sp|PUS10_NITMS|TRNA pseudouridine synthase Pus10|Nitrosopumilus maritimus (strain SCM1)

Query: 1 TFDLLDPKL 9
+FD LDP++
Sbjct: 132 SFDSLDPEI 140




15|SequenceR|80|71|LKGEFTFDLL

>sp|Y1290_METJA|UNCHARACTERIZED protein MJ1290|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KGEFTFD 8
KG FTFD
Sbjct: 230 KGTFTFD 236


>sp|GCH3_METTH|GTP cyclohydrolase III|Methanothermobacter thermautotrophicus (strain

Query: 1 LKGEFTFDLL 10
++G FT+DL+
Sbjct: 235 IRGGFTYDLV 244


>sp|RTCA_SULAC|RNA 3'-terminal phosphate cyclase|Sulfolobus acidocaldarius (strain

Query: 2 KGEFTFDL 9
KG+F FD+
Sbjct: 83 KGDFVFDI 90


>sp|METXA_NATPD|HOMOSERINE O-acetyltransferase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 GEFTFD 8
GEFTF+
Sbjct: 10 GEFTFE 15


>sp|NEP1_METTP|RIBOSOMAL RNA small subunit methyltransferase|Methanothrix thermoacetophila

Query: 2 KGEFTFDLL 10
KGEF D+L
Sbjct: 180 KGEFISDVL 188


>sp|CAS1B_METRM|CRISPR-ASSOCIATED protein Cas1 2|Methanobrevibacter ruminantium (strain ATCC 35063

Query: 2 KGEFTFDLL 10
KG TFD L
Sbjct: 44 KGSITFDAL 52


>sp|RS8_CENSY|SMALL ribosomal subunit protein uS8|Cenarchaeum symbiosum (strain A)

Query: 2 KGEFTF 7
KGE+TF
Sbjct: 83 KGEYTF 88


>sp|RTCA_SULTO|RNA 3'-terminal phosphate cyclase|Sulfurisphaera tokodaii (strain DSM

Query: 2 KGEFTFDL 9
KG+F FD+
Sbjct: 83 KGDFEFDV 90


>sp|RS19_METBU|SMALL ribosomal subunit protein uS19|Methanococcoides burtonii (strain

Query: 2 KGEFTF 7
KGE+TF
Sbjct: 13 KGEYTF 18


>sp|CAS1C_METRM|CRISPR-ASSOCIATED protein Cas1 3|Methanobrevibacter ruminantium (strain ATCC 35063

Query: 2 KGEFTFDLL 10
KG TFD L
Sbjct: 44 KGSITFDAL 52


>sp|PCNA_METPE|DNA polymerase sliding clamp|Methanosphaerula palustris (strain ATCC

Query: 4 EFTFDL 9
EFTFD+
Sbjct: 224 EFTFDI 229




16|SequenceR|85|76|QAAAELKGEF

>sp|SYM_PYRNV|METHIONINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 AAAELKGE 9
A AELKGE
Sbjct: 263 AVAELKGE 270


>sp|Y2234_ARCFU|UNCHARACTERIZED protein AF_2234|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 AAAELKGEF 10
A ELKGEF
Sbjct: 53 AVMELKGEF 61


>sp|GPM_THEAC|2,3-BISPHOSPHOGLYCERATE-DEPENDENT phosphoglycerate mutase|Thermoplasma acidophilum (strain ATCC

Query: 1 QAAAELKG 8
AAAELKG
Sbjct: 39 HAAAELKG 46


>sp|IDI2_THEON|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Thermococcus onnurineus (strain NA1)

Query: 1 QAAAELKGEF 10
+A AELK EF
Sbjct: 187 KALAELKAEF 196


>sp|IDI2_THEKO|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 QAAAELKGEF 10
+A AELK EF
Sbjct: 187 KALAELKAEF 196


>sp|IDI2_THESM|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Thermococcus sibiricus (strain DSM 12597

Query: 2 AAAELKGEF 10
A AELKGE
Sbjct: 188 ALAELKGEL 196


>sp|Y1429_THEAC|UPF0159 protein Ta1429|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 ELKGEF 10
ELKGEF
Sbjct: 231 ELKGEF 236




17|SequenceR|90|81|TAQRVQAAAE

>sp|LEUC_NATPD|3-ISOPROPYLMALATE dehydratase large subunit|Natronomonas pharaonis (strain ATCC 35678

Query: 2 AQRVQAAAE 10
+QRV+AAAE
Sbjct: 380 SQRVKAAAE 388


>sp|LEUC_HALVD|3-ISOPROPYLMALATE dehydratase large subunit|Haloferax volcanii (strain ATCC 29605

Query: 2 AQRVQAAAE 10
+QRV+AAAE
Sbjct: 380 SQRVKAAAE 388


>sp|LEUC_HALMA|3-ISOPROPYLMALATE dehydratase large subunit|Haloarcula marismortui (strain ATCC 43049

Query: 2 AQRVQAAAE 10
+QRVQ AAE
Sbjct: 380 SQRVQRAAE 388




18|SequenceR|95|86|MVIQNTAQRV

>sp|FTTA_METMA|TRANSCRIPTION termination factor FttA|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 MVIQNTAQR 9
MV++NT +R
Sbjct: 399 MVVKNTIER 407


>sp|PROF1_LOKSG|LOKI profilin-1|Lokiarchaeum sp. (strain GC14_75)

Query: 1 MVIQNTAQR 9
M+++NT +R
Sbjct: 73 MIVENTEER 81




19|SequenceR|100|91|IDACNMVIQN

>sp|COOS_ARCFU|CARBON monoxide dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 IDACNMVIQN 10
IDA MV++N
Sbjct: 70 IDAAGMVVRN 79


>sp|ENO_METMP|ENOLASE maripaludis (strain DSM 14266

Query: 1 IDACNMVIQN 10
IDA NM +N
Sbjct: 349 IDAANMAFRN 358


>sp|ENO_METM7|ENOLASE maripaludis (strain C7 /

Query: 1 IDACNMVIQN 10
IDA NM +N
Sbjct: 349 IDAANMAFRN 358


>sp|ENO_METM5|ENOLASE maripaludis (strain C5 /

Query: 1 IDACNMVIQN 10
IDA NM +N
Sbjct: 349 IDAANMAFRN 358


>sp|SYDND_HALMA|ASPARTATE--TRNA(ASP/ASN) ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 IDACNMVIQN 10
+DAC V+Q+
Sbjct: 240 MDACEHVVQS 249


>sp|DHQS_METBU|3-DEHYDROQUINATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 IDACNMVIQ 9
+D CNM+ +
Sbjct: 222 VDTCNMMTK 230


>sp|Y1313_METMA|UPF0200 protein MM_1313|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 IDACNMVIQN 10
IDA N+ I+N
Sbjct: 153 IDASNVEIEN 162




20|SequenceR|105|96|ATIIDIDACN

>sp|HDLA_ARCPA|HETERODISULFIDE reductase subunit A-like protein|Archaeoglobus profundus (strain

Query: 3 IIDIDAC 9
+IDIDAC
Sbjct: 291 VIDIDAC 297


>sp|ATRMA_PYRAB|TRNA (uracil(54)-C(5))-methyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 3 IIDIDAC 9
I+DID C
Sbjct: 131 IVDIDEC 137


>sp|PURA_HALMA|ADENYLOSUCCINATE synthetase|Haloarcula marismortui (strain ATCC 43049

Query: 1 ATIIDIDACN 10
TIIDID N
Sbjct: 233 GTIIDIDHGN 242


>sp|FWDF_METJA|POLYFERREDOXIN protein FwdF|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 IIDIDACN 10
IID++ACN
Sbjct: 270 IIDVNACN 277


Query: 2 TIIDIDAC 9
T+ID DAC
Sbjct: 237 TVIDKDAC 244


>sp|DNAG_METM7|DNA primase DnaG|Methanococcus maripaludis (strain C7 /

Query: 3 IIDIDACN 10
IID+DA N
Sbjct: 334 IIDVDAAN 341


>sp|DNAG_METMP|DNA primase DnaG|Methanococcus maripaludis (strain DSM 14266

Query: 3 IIDIDACN 10
IID+DA N
Sbjct: 331 IIDVDATN 338


>sp|DNAG_METM5|DNA primase DnaG|Methanococcus maripaludis (strain C5 /

Query: 3 IIDIDACN 10
IID+DA N
Sbjct: 333 IIDVDATN 340


>sp|DNAG_METM6|DNA primase DnaG|Methanococcus maripaludis (strain C6 /

Query: 3 IIDIDACN 10
IID+DA N
Sbjct: 333 IIDVDATN 340


>sp|NAOX_METJA|NADH oxidase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 TIIDIDACN 10
T+ID+D+ N
Sbjct: 79 TVIDVDSKN 87




21|SequenceR|110|101|EPAYSATIID

>sp|GATA_HALSA|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Halobacterium salinarum (strain ATCC

Query: 1 EPAYSATIID 10
EP Y+AT+++
Sbjct: 49 EPPYNATVVE 58


>sp|EF1A_METKA|ELONGATION factor 1-alpha|Methanopyrus kandleri (strain AV19 /

Query: 1 EPAYSAT 7
EPAY+AT
Sbjct: 250 EPAYTAT 256


>sp|IPYR_PYRFU|INORGANIC pyrophosphatase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 EPAYSATIID 10
EP Y TII+
Sbjct: 78 EPVYPLTIIE 87


>sp|IPYR_PYRHO|INORGANIC pyrophosphatase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 EPAYSATIID 10
EP Y TII+
Sbjct: 78 EPTYPLTIIE 87


>sp|GATA_METS3|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanobrevibacter smithii (strain ATCC

Query: 3 AYSATIID 10
+Y+AT+ID
Sbjct: 97 SYNATVID 104


>sp|IPYR_PYRAB|INORGANIC pyrophosphatase|Pyrococcus abyssi (strain GE5 /

Query: 1 EPAYSATIID 10
EP Y TII+
Sbjct: 78 EPTYPLTIIE 87


>sp|FLPA_HALSA|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Halobacterium salinarum (strain

Query: 1 EPAYSATIID 10
EPAY ++D
Sbjct: 24 EPAYGEPVVD 33


>sp|FLPA_HALS3|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Halobacterium salinarum (strain

Query: 1 EPAYSATIID 10
EPAY ++D
Sbjct: 24 EPAYGEPVVD 33


>sp|FLUC_META3|FLUORIDE-SPECIFIC ion channel FluC|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 YSATIID 10
YS+T+ID
Sbjct: 51 YSSTVID 57




22|SequenceR|115|106|IEEDGEPAYS

>sp|MAP2_METTH|METHIONINE aminopeptidase|Methanothermobacter thermautotrophicus (strain

Query: 1 IEEDGEPAY 9
IEE G PA+
Sbjct: 44 IEEGGRPAF 52


>sp|Y1623_METJA|UNCHARACTERIZED protein MJ1623|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EEDGEPAY 9
E DG+PAY
Sbjct: 223 ELDGKPAY 230


>sp|Y114_METJA|UNCHARACTERIZED protein MJ0114|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 IEEDGEPAYS 10
+ +DG+P Y+
Sbjct: 245 VAKDGKPVYA 254


>sp|HIS6_HALSA|IMIDAZOLE glycerol phosphate synthase subunit|Halobacterium salinarum

Query: 1 IEEDGEPA 8
+++DGEPA
Sbjct: 15 LDDDGEPA 22


>sp|HIS6_HALS3|IMIDAZOLE glycerol phosphate synthase subunit|Halobacterium salinarum

Query: 1 IEEDGEPA 8
+++DGEPA
Sbjct: 15 LDDDGEPA 22


>sp|PURL_THESM|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermococcus sibiricus (strain DSM 12597

Query: 4 DGEPAYS 10
DG P+YS
Sbjct: 434 DGNPSYS 440


>sp|REG3_PYRAB|UNCHARACTERIZED HTH-type transcriptional regulator PYRAB01370|Pyrococcus abyssi

Query: 1 IEEDGEPAYS 10
++EDG +YS
Sbjct: 23 LQEDGRMSYS 32


>sp|UVRB_METMP|UVRABC system protein B|Methanococcus maripaludis (strain DSM 14266

Query: 3 EDGEPAY 9
++GEPAY
Sbjct: 315 KEGEPAY 321


>sp|SURE_THEPD|5'-NUCLEOTIDASE SurE|Thermofilum pendens (strain DSM 2475

Query: 4 DGEPAY 9
DGEP Y
Sbjct: 59 DGEPVY 64


>sp|SPSS_METTP|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 IEEDGEPAYS 10
+E GEP Y+
Sbjct: 131 VENSGEPEYT 140


>sp|DTDA_THEON|D-AMINOACYL-TRNA deacylase|Thermococcus onnurineus (strain NA1)

Query: 4 DGEPAYS 10
DG P YS
Sbjct: 34 DGNPVYS 40


>sp|REG3_PYRFU|UNCHARACTERIZED HTH-type transcriptional regulator PF1231|Pyrococcus furiosus

Query: 1 IEEDGEPAYS 10
++EDG +YS
Sbjct: 13 LQEDGRRSYS 22


>sp|IPYR_SULAC|INORGANIC pyrophosphatase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 IEEDGEP 7
+EEDG+P
Sbjct: 59 LEEDGDP 65


>sp|GLPK_PYRFU|GLYCEROL kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 EEDGEPAYS 10
++DG+P Y+
Sbjct: 89 KKDGKPVYN 97


>sp|Y3408_METJA|UNCHARACTERIZED protein MJECS08|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EEDGEP 7
+EDGEP
Sbjct: 488 DEDGEP 493


>sp|IPYR_AERPE|INORGANIC pyrophosphatase|Aeropyrum pernix (strain ATCC 700893

Query: 1 IEEDGEPA 8
+EEDG+P
Sbjct: 63 LEEDGDPV 70


>sp|HIS6_HALWD|IMIDAZOLE glycerol phosphate synthase subunit|Haloquadratum walsbyi (strain

Query: 1 IEEDGEPA 8
++EDG PA
Sbjct: 14 LDEDGNPA 21


>sp|IPYR_SULTO|INORGANIC pyrophosphatase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 IEEDGEP 7
+EEDG+P
Sbjct: 59 LEEDGDP 65


>sp|FEN_NANEQ|FLAP endonuclease 1|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 IEEDGEP 7
I +DGEP
Sbjct: 41 IRQDGEP 47


>sp|REG3_PYRHO|UNCHARACTERIZED HTH-type transcriptional regulator PH0140|Pyrococcus horikoshii

Query: 1 IEEDGEPAYS 10
++EDG +YS
Sbjct: 23 LQEDGRMSYS 32


>sp|DHQS_METKA|3-DEHYDROQUINATE synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 IEEDGEPA 8
+ EDGEP
Sbjct: 359 VREDGEPV 366




23|SequenceR|120|111|FGTAHIEEDG

>sp|Y1365_METJA|UNCHARACTERIZED protein MJ1365|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GTAHIEED 9
GTAH+ +D
Sbjct: 23 GTAHVSKD 30


>sp|PURP_META3|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanococcus aeolicus (strain ATCC

Query: 2 GTAHIEE 8
G AHIEE
Sbjct: 194 GNAHIEE 200


>sp|IORB_ARCFU|INDOLEPYRUVATE oxidoreductase subunit IorB|Archaeoglobus fulgidus (strain ATCC

Query: 1 FGTAHIEE 8
FG H+EE
Sbjct: 161 FGIEHVEE 168


>sp|SYT_NANEQ|THREONINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 FGTAHIEEDG 10
FG +I++DG
Sbjct: 470 FGIKYIDKDG 479


>sp|SYT_THEON|THREONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 1 FGTAHIEEDG 10
FG + +EDG
Sbjct: 458 FGITYYDEDG 467


>sp|PRNK_PYRAB|POLYRIBONUCLEOTIDE 5'-hydroxyl-kinase PYRAB01840|Pyrococcus abyssi (strain GE5 /

Query: 1 FGTAHIEEDG 10
FG + EDG
Sbjct: 334 FGRVRVREDG 343


>sp|KDPB_THEVO|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Thermoplasma volcanium (strain ATCC

Query: 4 AHIEEDG 10
AH+++DG
Sbjct: 104 AHVQKDG 110


>sp|RPO2C_ARCFU|DNA-DIRECTED RNA polymerase subunit Rpo2C|Archaeoglobus fulgidus (strain ATCC

Query: 4 AHIEEDG 10
AH++EDG
Sbjct: 274 AHLDEDG 280


>sp|Y1684_METTH|UNCHARACTERIZED protein MTH_1684|Methanothermobacter thermautotrophicus (strain

Query: 1 FGTAHIEED 9
+GT H ED
Sbjct: 120 YGTGHSRED 128


>sp|SYP_HALMA|PROLINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 3 TAHIEEDG 10
TAH +EDG
Sbjct: 167 TAHADEDG 174


>sp|TATCO_HALVD|SEC-INDEPENDENT protein translocase protein TatCo|Haloferax volcanii (strain ATCC

Query: 3 TAHIEE 8
TAHIEE
Sbjct: 190 TAHIEE 195


>sp|ATGT_METJA|TRNA-GUANINE(15) transglycosylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GTAHIEE 8
GT H+EE
Sbjct: 266 GTLHLEE 272


>sp|PRNK_PYRFU|POLYRIBONUCLEOTIDE 5'-hydroxyl-kinase PF0112|Pyrococcus furiosus (strain ATCC 43587

Query: 1 FGTAHIEEDG 10
FG + EDG
Sbjct: 334 FGRIRVREDG 343


>sp|QUEC2_SULTO|7-CYANO-7-DEAZAGUANINE synthase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 FGTAHIEEDG 10
FG IE+DG
Sbjct: 37 FGVIVIEKDG 46


>sp|PRNK_PYRHO|POLYRIBONUCLEOTIDE 5'-hydroxyl-kinase PH0197|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 FGTAHIEEDG 10
FG + EDG
Sbjct: 341 FGRIRVREDG 350




24|SequenceR|125|116|ENQYNFGTAH

>sp|GATD_PYRHO|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrococcus horikoshii (strain ATCC

Query: 1 ENQYNFGTA 9
EN YN G A
Sbjct: 52 ENGYNIGIA 60


>sp|GATD_PYRAB|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrococcus abyssi (strain GE5 /

Query: 1 ENQYNFGTA 9
EN YN G A
Sbjct: 52 ENGYNIGIA 60


>sp|DP2L_THEVO|DNA polymerase II large subunit|Thermoplasma volcanium (strain ATCC

Query: 1 ENQYNFGTA 9
EN YN TA
Sbjct: 414 ENNYNLPTA 422


>sp|CMO_PYRFU|TUNGSTEN-CONTAINING aldehyde ferredoxin oxidoreductase cofactor-modifying|Pyrococcus

Query: 3 QYNFG 7
QYNFG
Sbjct: 349 QYNFG 353


>sp|Y947_ARCFU|PUTATIVE RNase AF_0947|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ENQYNFGTAH 10
E + NF T H
Sbjct: 14 EREINFATEH 23


>sp|COBQ_METVS|PROBABLE cobyric acid synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 ENQYNFGT 8
EN Y FGT
Sbjct: 426 ENSYIFGT 433




25|SequenceR|130|121|TVKEDENQYN

>sp|MVHB_METFE|POLYFERREDOXIN protein MvhB|Methanothermus fervidus

Query: 1 TVKEDENQYN 10
TVK + QYN
Sbjct: 352 TVKRNRIQYN 361


>sp|AATB1_METHJ|A-TYPE ATP synthase subunit B|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 KEDENQY 9
KE+ENQ+
Sbjct: 186 KEEENQF 192


>sp|SRP54_PYRAB|SIGNAL recognition particle 54 kDa|Pyrococcus abyssi (strain GE5 /

Query: 2 VKEDENQYN 10
VKE NQYN
Sbjct: 412 VKELLNQYN 420


>sp|GUAAB_METJA|GMP synthase [glutamine-hydrolyzing] subunit B|Methanocaldococcus

Query: 2 VKEDENQYN 10
VK DE +YN
Sbjct: 244 VKGDEREYN 252


>sp|FAU1_CALMQ|PROBABLE ribonuclease FAU-1|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 TVKEDEN 7
T+K+DEN
Sbjct: 48 TIKDDEN 54




26|SequenceR|135|126|SPFSLTVKED

>sp|CYSO_AERPE|PROTEIN CysO|Aeropyrum pernix (strain ATCC 700893

Query: 1 SPFSLTVKE 9
+PFSL+VK+
Sbjct: 120 NPFSLSVKD 128


>sp|Y485_METJA|PROBABLE sulfurtransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 SPFSLTVKED 10
+PF LT+++D
Sbjct: 14 NPFFLTIRKD 23


>sp|PURL_METST|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 SPFSLTVKED 10
S F +TVKED
Sbjct: 657 SRFIITVKED 666


>sp|SYA_METAC|ALANINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 PFSLTVKED 10
PF++T KE+
Sbjct: 179 PFAVTYKEE 187


>sp|SAT_NITMS|SULFATE adenylyltransferase|Nitrosopumilus maritimus (strain SCM1)

Query: 3 FSLTVKED 10
FS+T+ ED
Sbjct: 27 FSITISED 34




27|SequenceR|140|131|GTQLTSPFSL

>sp|QUEC_PYRAE|7-CYANO-7-DEAZAGUANINE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GTQLTSP 7
GTQLT P
Sbjct: 87 GTQLTDP 93


>sp|ADEC_METBF|ADENINE deaminase|Methanosarcina barkeri (strain Fusaro /

Query: 1 GTQLTSPF 8
GT L SPF
Sbjct: 508 GTSLMSPF 515


>sp|ADEC_METMA|ADENINE deaminase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GTQLTSPF 8
GT L SPF
Sbjct: 512 GTSLESPF 519


>sp|ADEC_METAC|ADENINE deaminase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GTQLTSPF 8
GT L SPF
Sbjct: 510 GTSLESPF 517




28|SequenceR|145|136|KLTGTGTQLT

>sp|THIM2_METST|HYDROXYETHYLTHIAZOLE kinase 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 KLTGTGTQLT 10
K+TG+G LT
Sbjct: 203 KITGSGCMLT 212


>sp|KCY_METST|CYTIDYLATE kinase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 LTGTGTQLT 10
L GTGT T
Sbjct: 8 LAGTGTSTT 16




29|SequenceR|150|141|GVFDIKLTGT

>sp|TRPD_METB6|ANTHRANILATE phosphoribosyltransferase|Methanoregula boonei (strain DSM 21154

Query: 1 GVFDIKLTG 9
GV+D KLTG
Sbjct: 195 GVYDQKLTG 203


>sp|METK_PYRAB|S-ADENOSYLMETHIONINE synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 GVFDIKLTGT 10
G+F I +TGT
Sbjct: 265 GIFYITVTGT 274


>sp|METK_PYRHO|S-ADENOSYLMETHIONINE synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GVFDIKLTGT 10
G+F I +TGT
Sbjct: 265 GIFYITVTGT 274


>sp|AROC_METM5|CHORISMATE synthase|Methanococcus maripaludis (strain C5 /

Query: 1 GVFDIKLTGT 10
G+F+ K TGT
Sbjct: 68 GIFEGKTTGT 77


>sp|AROC_METBU|CHORISMATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 GVFDIKLTGT 10
G+F+ K TGT
Sbjct: 70 GIFEGKTTGT 79


>sp|RS4_CENSY|SMALL ribosomal subunit protein uS4|Cenarchaeum symbiosum (strain A)

Query: 4 DIKLTG 9
DIKLTG
Sbjct: 151 DIKLTG 156


>sp|AROC_META3|CHORISMATE synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 GVFDIKLTGT 10
G+F+ K TGT
Sbjct: 68 GIFEGKTTGT 77


>sp|AROC_METM7|CHORISMATE synthase|Methanococcus maripaludis (strain C7 /

Query: 1 GVFDIKLTGT 10
G+F+ K TGT
Sbjct: 68 GIFEGKTTGT 77


>sp|AROC_METMP|CHORISMATE synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 GVFDIKLTGT 10
G+F+ K TGT
Sbjct: 68 GIFEGKTTGT 77


>sp|AROC_METMA|CHORISMATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GVFDIKLTGT 10
G+F+ K TGT
Sbjct: 70 GIFEGKSTGT 79


>sp|MOAA_PYRAE|PROBABLE GTP 3',8-cyclase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GVFDIKLTG 9
GV D K+TG
Sbjct: 57 GVADFKITG 65


>sp|AROC_METVS|CHORISMATE synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 GVFDIKLTGT 10
G+F+ K TGT
Sbjct: 69 GIFEGKTTGT 78


>sp|RS8_META3|SMALL ribosomal subunit protein uS8|Methanococcus aeolicus (strain ATCC

Query: 1 GVFDIKLTG 9
G++ ++LTG
Sbjct: 59 GIYKVELTG 67




30|SequenceR|155|146|KDNLEGVFDI

>sp|RNP3_METMP|RIBONUCLEASE P protein component 3|Methanococcus maripaludis (strain DSM 14266

Query: 4 LEGVFDI 10
LEG+FDI
Sbjct: 2 LEGIFDI 8


>sp|RNP3_METM7|RIBONUCLEASE P protein component 3|Methanococcus maripaludis (strain C7 /

Query: 4 LEGVFDI 10
LEG+FDI
Sbjct: 2 LEGIFDI 8


>sp|RNP3_METM5|RIBONUCLEASE P protein component 3|Methanococcus maripaludis (strain C5 /

Query: 4 LEGVFDI 10
LEG+FDI
Sbjct: 2 LEGIFDI 8


>sp|RFCL_HALSA|REPLICATION factor C large subunit|Halobacterium salinarum (strain ATCC 700922

Query: 1 KDNLEGVFD 9
+D EGVFD
Sbjct: 222 RDRTEGVFD 230


>sp|RFCL_HALS3|REPLICATION factor C large subunit|Halobacterium salinarum (strain ATCC 29341

Query: 1 KDNLEGVFD 9
+D EGVFD
Sbjct: 222 RDRTEGVFD 230


>sp|BSUHB_THEKO|FRUCTOSE-1,6-BISPHOSPHATASE/INOSITOL-1-MONOPHOSPHATASE kodakarensis (strain ATCC BAA-918

Query: 1 KDNLEGVFDI 10
+ +L+GVFDI
Sbjct: 184 RGSLDGVFDI 193


>sp|RPO1N_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo1N|Sulfolobus acidocaldarius (strain ATCC

Query: 4 LEGVFD 9
LEGVFD
Sbjct: 594 LEGVFD 599


>sp|PYRI_METM6|ASPARTATE carbamoyltransferase regulatory chain|Methanococcus maripaludis

Query: 1 KDNLEGVFDI 10
K+N+EG F I
Sbjct: 115 KENIEGKFSI 124


>sp|GLCD1_CALMQ|GLUCOSE 1-dehydrogenase 1|Caldivirga maquilingensis (strain ATCC 700844

Query: 3 NLEGVFDI 10
++EGVFD+
Sbjct: 226 SIEGVFDL 233


>sp|PYRI_METM5|ASPARTATE carbamoyltransferase regulatory chain|Methanococcus maripaludis

Query: 1 KDNLEGVFDI 10
K+N+EG F I
Sbjct: 115 KENIEGKFSI 124


>sp|RPO1N_SACSH|DNA-DIRECTED RNA polymerase subunit Rpo1N|Saccharolobus shibatae (strain ATCC

Query: 4 LEGVFD 9
LEGVFD
Sbjct: 594 LEGVFD 599


>sp|RPO1N_SACS2|DNA-DIRECTED RNA polymerase subunit Rpo1N|Saccharolobus solfataricus (strain

Query: 4 LEGVFD 9
LEGVFD
Sbjct: 594 LEGVFD 599


>sp|PHSG_THELN|MALTODEXTRIN phosphorylase|Thermococcus litoralis (strain ATCC 51850

Query: 2 DNLEGVFDI 10
+NLEG+ D+
Sbjct: 14 ENLEGLLDL 22


>sp|RS3A_IGNH4|SMALL ribosomal subunit protein eS1|Ignicoccus hospitalis (strain KIN4/I

Query: 4 LEGVFDI 10
+EG+FD+
Sbjct: 105 IEGIFDV 111


>sp|Y066_METJA|UNCHARACTERIZED protein MJ0066|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 DNLEGVFDI 10
DNLE FD+
Sbjct: 219 DNLEEAFDL 227


>sp|HTPX_PYRHO|PROTEASE HtpX homolog|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 KDNLEGV 7
KD LEGV
Sbjct: 124 KDELEGV 130


>sp|KCY_META3|CYTIDYLATE kinase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 NLEGVFDI 10
N+EGVF I
Sbjct: 161 NIEGVFSI 168


>sp|Y1008_ARCFU|UNCHARACTERIZED protein AF_1008|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 NLEGVFD 9
NLEG+F+
Sbjct: 46 NLEGIFN 52


>sp|Y250_ARCFU|UNCHARACTERIZED protein AF_0250|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KDNLEGVFDI 10
K NLE VF++
Sbjct: 83 KGNLEEVFEL 92


>sp|Y1127_METJA|UNCHARACTERIZED protein MJ1127|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KDNLEGVFDI 10
K+N+E ++D+
Sbjct: 267 KENIERIYDM 276




31|SequenceR|160|151|YFGKMKDNLE

>sp|NCPP_METAR|PROBABLE inosine/xanthosine triphosphatase|Methanocella arvoryzae (strain

Query: 2 FGKMKDNLE 10
FGK+ DN+E
Sbjct: 20 FGKLFDNVE 28


>sp|FLAF_METVO|PUTATIVE flagella-related protein F|Methanococcus voltae

Query: 3 GKMKDNLE 10
GKM +NLE
Sbjct: 47 GKMNENLE 54


>sp|PDXT_NATPD|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Natronomonas pharaonis (strain

Query: 2 FGKMKDNLE 10
FG+ KD+ E
Sbjct: 115 FGRQKDSFE 123


>sp|PDXT_HALLT|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Halorubrum lacusprofundi (strain

Query: 2 FGKMKDNLE 10
FG+ KD+ E
Sbjct: 114 FGRQKDSFE 122


>sp|DPHB_METMP|DIPHTHINE synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 YFGKMKDNL 9
Y+GK+KD L
Sbjct: 215 YYGKIKDLL 223


>sp|DPHB_METM5|DIPHTHINE synthase|Methanococcus maripaludis (strain C5 /

Query: 1 YFGKMKD 7
Y+GK+KD
Sbjct: 215 YYGKIKD 221


>sp|Y425_METJA|UNCHARACTERIZED protein MJ0425|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YFGKMKDNL 9
Y+GKM +NL
Sbjct: 31 YYGKMFENL 39


>sp|DPHB_METM7|DIPHTHINE synthase|Methanococcus maripaludis (strain C7 /

Query: 1 YFGKMKD 7
Y+GK+KD
Sbjct: 215 YYGKIKD 221


>sp|DPHB_METM6|DIPHTHINE synthase|Methanococcus maripaludis (strain C6 /

Query: 1 YFGKMKD 7
Y+GK+KD
Sbjct: 215 YYGKIKD 221


>sp|KPTA_PYRAB|PROBABLE RNA 2'-phosphotransferase|Pyrococcus abyssi (strain GE5 /

Query: 1 YFGKMKDNLE 10
Y G +++NLE
Sbjct: 100 YHGTIRENLE 109


>sp|GLPK2_SACS2|GLYCEROL kinase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 YFGKMKD 7
YFG +KD
Sbjct: 119 YFGMIKD 125


>sp|Y1481_ARCFU|PUTATIVE antitoxin AF_1481|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 YFGKMKDN 8
YFG +KD+
Sbjct: 42 YFGVLKDS 49




32|SequenceR|165|156|TYKSRYFGKM

>sp|ENDA_THEKO|TRNA-SPLICING endonuclease|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 YKSRYFGKM 10
Y RYFGK+
Sbjct: 23 YNKRYFGKV 31


>sp|SYE_HALMA|GLUTAMATE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 TYKSRYFGK 9
TYK RY G+
Sbjct: 133 TYKQRYDGE 141


>sp|SYE_HALSA|GLUTAMATE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 TYKSRYFG 8
TYK RY G
Sbjct: 133 TYKQRYDG 140


>sp|SYE_HALS3|GLUTAMATE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 1 TYKSRYFG 8
TYK RY G
Sbjct: 133 TYKQRYDG 140


>sp|SYE_NATPD|GLUTAMATE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 TYKSRYFG 8
TYK RY G
Sbjct: 133 TYKDRYDG 140


>sp|ENDA_THEGJ|TRNA-SPLICING endonuclease|Thermococcus gammatolerans (strain DSM 15229

Query: 2 YKSRYFGKM 10
Y R+FGK+
Sbjct: 23 YNKRHFGKL 31


>sp|Y1635_METJA|TNPB-LIKE protein MJ1635|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YKSRYFGK 9
YKS+YF +
Sbjct: 290 YKSKYFNR 297


>sp|Y1859_ARCFU|UNCHARACTERIZED protein AF_1859|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 YKSRYFGKM 10
Y RY GKM
Sbjct: 116 YGLRYLGKM 124


>sp|ARLMC_PYRAB|23S rRNA (uracil(747)-C(5))-methyltransferase|Pyrococcus abyssi

Query: 3 KSRYFGK 9
K RYFG+
Sbjct: 60 KCRYFGR 66




33|SequenceR|170|161|EGSPTTYKSR

>sp|RPIA_PYRAB|RIBOSE-5-PHOSPHATE isomerase A|Pyrococcus abyssi (strain GE5 /

Query: 2 GSPTTYKSR 10
G PT+Y+SR
Sbjct: 53 GVPTSYQSR 61


>sp|RPIA_NATPD|RIBOSE-5-PHOSPHATE isomerase A|Natronomonas pharaonis (strain ATCC 35678

Query: 2 GSPTTYKSR 10
G PT+Y+SR
Sbjct: 55 GIPTSYQSR 63


>sp|ENDA_THEAC|TRNA-SPLICING endonuclease|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 EGSPTTYKSR 10
EG PT Y S+
Sbjct: 132 EGDPTVYSSQ 141


>sp|SYA_METMP|ALANINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 EGSPTTYKS 9
+G+PT Y+S
Sbjct: 247 QGTPTVYES 255


>sp|SYA_METM7|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 EGSPTTYKS 9
+G+PT Y+S
Sbjct: 247 QGTPTVYES 255


>sp|SYA_METM6|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 1 EGSPTTYKS 9
+G+PT Y+S
Sbjct: 247 QGTPTVYES 255


>sp|SYA_METM5|ALANINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 1 EGSPTTYKS 9
+G+PT Y+S
Sbjct: 247 QGTPTVYES 255


>sp|RL10_ARCFU|LARGE ribosomal subunit protein uL10|Archaeoglobus fulgidus (strain

Query: 2 GSPTTYKSR 10
GSP YK R
Sbjct: 6 GSPPEYKVR 14


>sp|CYAS_METPS|CYSTEATE synthase|Methanocella paludicola (strain DSM 17711

Query: 2 GSPTTYKSR 10
G+P T+KS+
Sbjct: 64 GAPVTFKSQ 72


>sp|CYAS_METBU|CYSTEATE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 2 GSPTTYKS 9
G P TYKS
Sbjct: 64 GRPVTYKS 71


>sp|SYA_PICTO|ALANINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 GSPTTYKS 9
G+PT Y+S
Sbjct: 254 GTPTVYES 261


>sp|CYAS_METMA|CYSTEATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 EGSPTTYKS 9
E P TYKS
Sbjct: 63 EAGPITYKS 71


>sp|SYA_METVS|ALANINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 EGSPTTYKS 9
+G+PT Y++
Sbjct: 247 QGTPTVYEA 255


>sp|CYAS_METAC|CYSTEATE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 EGSPTTYKS 9
E P TYKS
Sbjct: 63 EAGPITYKS 71


>sp|SYA_THEVO|ALANINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 EGSPTTYKS 9
+G+PT Y++
Sbjct: 256 QGTPTVYQA 264


>sp|SYA_THEAC|ALANINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 EGSPTTYKS 9
+G+PT Y++
Sbjct: 256 QGTPTVYQA 264


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 EGSPTTYKS 9
+GSPT Y +
Sbjct: 254 QGSPTIYDA 262


>sp|TRF3_THEVO|TRICORN protease-interacting factor F3|Thermoplasma volcanium (strain ATCC

Query: 3 SPTTYKSR 10
+P TYK+R
Sbjct: 528 TPDTYKNR 535


>sp|PURT_SULAC|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Sulfolobus

Query: 2 GSPTTYKSR 10
G P TY R
Sbjct: 361 GKPVTYNER 369


>sp|GGGPS_METAC|GERANYLGERANYLGLYCERYL phosphate synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 GSPTTYKSR 10
G+P YKS+
Sbjct: 113 GAPLVYKSQ 121


>sp|PURT_SACS2|FORMATE-DEPENDENT phosphoribosylglycinamide formyltransferase|Saccharolobus

Query: 2 GSPTTYKSR 10
G P TY+ R
Sbjct: 360 GKPVTYEKR 368


>sp|SYA_HALSA|ALANINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 EGSPTTYKS 9
+G+PT Y++
Sbjct: 264 QGTPTVYEA 272


>sp|SYA_HALS3|ALANINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 1 EGSPTTYKS 9
+G+PT Y++
Sbjct: 264 QGTPTVYEA 272


>sp|TF2B2_THEVO|TRANSCRIPTION initiation factor IIB 2|Thermoplasma volcanium (strain ATCC 51530

Query: 2 GSPTTYKS 9
GSP TY S
Sbjct: 69 GSPMTYLS 76


>sp|SYA_NATPD|ALANINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 EGSPTTYKS 9
+G+PT Y++
Sbjct: 268 QGTPTVYEA 276


>sp|TF2B2_THEAC|TRANSCRIPTION initiation factor IIB 2|Thermoplasma acidophilum (strain ATCC

Query: 2 GSPTTYKS 9
GSP TY S
Sbjct: 63 GSPMTYLS 70


>sp|SYA_HALMA|ALANINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 EGSPTTYKS 9
+G+PT Y++
Sbjct: 267 QGTPTVYEA 275


>sp|GGGPS_METBU|GERANYLGERANYLGLYCERYL phosphate synthase|Methanococcoides burtonii (strain DSM 6242

Query: 2 GSPTTYKS 9
G+P YKS
Sbjct: 113 GAPVVYKS 120




34|SequenceR|175|166|AAYRVEGSPT

>sp|SURE_METLZ|5'-NUCLEOTIDASE SurE|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 AYRVEGSPT 10
AY VEG PT
Sbjct: 66 AYTVEGRPT 74


>sp|RS11_NANEQ|SMALL ribosomal subunit protein uS11|Nanoarchaeum equitans (strain

Query: 2 AYRVEGSPT 10
A R+EGSPT
Sbjct: 42 ADRLEGSPT 50


>sp|PUR2_METB6|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanoregula boonei (strain DSM 21154

Query: 1 AAYRVEGSP 9
A Y++EG+P
Sbjct: 113 AEYKIEGNP 121


>sp|Y348_METJA|UNCHARACTERIZED protein MJ0348|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 YRVEGSP 9
YR+ GSP
Sbjct: 697 YRIYGSP 703


>sp|SURE_THEGJ|5'-NUCLEOTIDASE SurE|Thermococcus gammatolerans (strain DSM 15229

Query: 2 AYRVEGSPT 10
AY ++G+PT
Sbjct: 64 AYGIDGTPT 72


>sp|SURE_THEKO|5'-NUCLEOTIDASE SurE|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 AYRVEGSPT 10
AY ++G+PT
Sbjct: 64 AYGIDGTPT 72


>sp|SYS_HALLT|SERINE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 AYRVEGS 8
AYR+EG+
Sbjct: 220 AYRIEGT 226


>sp|FWDB_METJA|TUNGSTEN-CONTAINING formylmethanofuran dehydrogenase 2 subunit|Methanocaldococcus

Query: 2 AYRVEGSP 9
AYR++G P
Sbjct: 397 AYRMDGVP 404


>sp|GVPC1_HALSA|GAS vesicle protein C1|Halobacterium salinarum (strain ATCC 700922

Query: 1 AAYRVEGSP 9
AA VEGSP
Sbjct: 306 AAPEVEGSP 314


>sp|FWDB_METMP|TUNGSTEN-CONTAINING formylmethanofuran dehydrogenase 2 subunit|Methanococcus

Query: 2 AYRVEGSP 9
AYR++G P
Sbjct: 396 AYRMDGVP 403


>sp|CAS1_HYPBU|CRISPR-ASSOCIATED endonuclease Cas1|Hyperthermus butylicus (strain DSM 5456

Query: 1 AAYRVEG 7
A YRVEG
Sbjct: 136 AGYRVEG 142




35|SequenceR|180|171|EFQTVAAYRV

>sp|NFI_THEAC|BIFUNCTIONAL methyltransferase/endonuclease|Thermoplasma acidophilum (strain

Query: 1 EFQTVAAYRV 10
EF+TVAA+ V
Sbjct: 142 EFRTVAAFDV 151


>sp|CBID_THEAC|COBALT-PRECORRIN-5B C(1)-methyltransferase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 FQTVAAY 8
F+T+AAY
Sbjct: 275 FETIAAY 281




36|SequenceR|185|176|RADTAEFQTV

>sp|PURP_PYRIL|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrobaculum islandicum (strain DSM

Query: 1 RADTAEF 7
RAD AEF
Sbjct: 42 RADVAEF 48


>sp|DNAG_METS5|DNA primase DnaG|Metallosphaera sedula (strain ATCC 51363

Query: 1 RADTAEFQTV 10
RA+ AE QTV
Sbjct: 292 RAEVAEQQTV 301


>sp|PURP_PYRNV|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrobaculum neutrophilum (strain DSM

Query: 1 RADTAEF 7
RAD AEF
Sbjct: 53 RADAAEF 59


>sp|Y2291_ARCFU|UNCHARACTERIZED protein AF_2291|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 ADTAEFQT 9
ADTA+F T
Sbjct: 247 ADTADFGT 254


>sp|PAN2_HALSA|PROTEASOME-ACTIVATING nucleotidase 2|Halobacterium salinarum (strain ATCC 700922

Query: 2 ADTAEF 7
ADTAEF
Sbjct: 352 ADTAEF 357


>sp|ARLY_METVS|ARGININOSUCCINATE lyase|Methanococcus vannielii (strain ATCC 35089

Query: 4 TAEFQTV 10
TAEF+TV
Sbjct: 261 TAEFKTV 267




37|SequenceR|190|181|CPFARRADTA

>sp|RL6_METMP|LARGE ribosomal subunit protein uL6|Methanococcus maripaludis (strain

Query: 1 CPFARRADTA 10
C F R+A TA
Sbjct: 57 CAFPRKAQTA 66


>sp|RL6_METM7|LARGE ribosomal subunit protein uL6|Methanococcus maripaludis (strain

Query: 1 CPFARRADTA 10
C F R+A TA
Sbjct: 57 CTFPRKAQTA 66


>sp|RL6_METM6|LARGE ribosomal subunit protein uL6|Methanococcus maripaludis (strain

Query: 1 CPFARRADTA 10
C F R+A TA
Sbjct: 57 CTFPRKAQTA 66


>sp|HMDH_PYRHO|3-HYDROXY-3-METHYLGLUTARYL-COENZYME A reductase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 CPFARRA 7
CP ARRA
Sbjct: 143 CPNARRA 149


>sp|HMDH_PYRAB|3-HYDROXY-3-METHYLGLUTARYL-COENZYME A reductase|Pyrococcus abyssi (strain GE5 /

Query: 1 CPFARRA 7
CP ARRA
Sbjct: 138 CPNARRA 144




38|SequenceR|195|186|APEDWCPFAR

>sp|HTR8_HALS3|TRANSDUCER protein Htr8|Halobacterium salinarum (strain ATCC 29341

Query: 3 EDWCPFA 9
EDW PFA
Sbjct: 147 EDWLPFA 153


>sp|ACDA_METBU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanococcoides

Query: 2 PEDWCPFAR 10
PEDW F R
Sbjct: 738 PEDWYKFVR 746


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 PEDWCPFAR 10
PEDW F R
Sbjct: 739 PEDWWKFVR 747


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 PEDWCPFAR 10
PEDW F R
Sbjct: 741 PEDWWKFVR 749


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 PEDWCPFAR 10
PEDW F R
Sbjct: 741 PEDWWKFVR 749


>sp|ACDA1_METBF|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina barkeri

Query: 2 PEDWCPFAR 10
PEDW F R
Sbjct: 742 PEDWWKFVR 750


>sp|ACDA2_METMA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina mazei

Query: 2 PEDWCPFAR 10
PEDW F R
Sbjct: 743 PEDWWKFVR 751


>sp|ACDA1_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 PEDWCPFAR 10
PEDW F R
Sbjct: 742 PEDWWKFVR 750


>sp|ACDA1_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 PEDWCPFAR 10
PEDW F R
Sbjct: 742 PEDWWKFIR 750


>sp|ACDA1_METMA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina mazei

Query: 2 PEDWCPFAR 10
PEDW F R
Sbjct: 742 PEDWWKFIR 750


>sp|Y763_ARCFU|UNCHARACTERIZED protein AF_0763|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PEDWC 6
P+DWC
Sbjct: 60 PDDWC 64


>sp|OFOB2_SULTO|2-OXOACID:FERREDOXIN oxidoreductase 2, subunit beta|Sulfurisphaera tokodaii (strain

Query: 4 DWCP 7
DWCP
Sbjct: 10 DWCP 13


>sp|ASPG_THEKO|L-ASPARAGINASE kodakarensis (strain ATCC BAA-918

Query: 2 PEDWCPFAR 10
PEDW R
Sbjct: 59 PEDWVTIGR 67


>sp|GIN23_SULAC|DNA replication complex GINS protein|Sulfolobus acidocaldarius

Query: 3 EDWCPF 8
EDW PF
Sbjct: 25 EDWGPF 30


>sp|DPOL_PYRSD|DNA polymerase|Pyrococcus sp. (strain GB-D)

Query: 2 PEDWCPFAR 10
PE+W P +
Sbjct: 496 PEEWVPLIK 504


>sp|OFOB_SACSO|2-OXOACID:FERREDOXIN oxidoreductase subunit beta|Saccharolobus solfataricus

Query: 4 DWCP 7
DWCP
Sbjct: 10 DWCP 13


>sp|GATD_ARCFU|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Archaeoglobus fulgidus (strain ATCC

Query: 2 PEDWCPFAR 10
PE+W AR
Sbjct: 140 PENWIELAR 148


>sp|DPOL_THEHY|DNA polymerase|Thermococcus hydrothermalis

Query: 2 PEDWCPF 8
PE+W P
Sbjct: 462 PEEWIPL 468


>sp|Y485_METJA|PROBABLE sulfurtransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 EDWCPFAR 10
+D CP++R
Sbjct: 281 KDMCPYSR 288


>sp|ASPG_PYRFU|L-ASPARAGINASE furiosus (strain ATCC 43587

Query: 2 PEDWCPFA 9
PEDW A
Sbjct: 57 PEDWVDLA 64


>sp|DP2L_HALSA|DNA polymerase II large subunit|Halobacterium salinarum (strain ATCC

Query: 3 EDWCPFAR 10
+DW P AR
Sbjct: 564 DDWLPLAR 571


>sp|DPOL_THEKO|DNA polymerase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 PEDWCP 7
PE+W P
Sbjct: 855 PEEWLP 860


>sp|SYT_META3|THREONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 APEDWCPF 8
A +DW PF
Sbjct: 557 AGKDWVPF 564


>sp|OFOB_SULSP|2-OXOACID:FERREDOXIN oxidoreductase subunit beta|Sulfolobus sp

Query: 4 DWCP 7
DWCP
Sbjct: 10 DWCP 13


>sp|OFOB1_SULTO|2-OXOACID:FERREDOXIN oxidoreductase 1, subunit beta|Sulfurisphaera tokodaii (strain

Query: 4 DWCP 7
DWCP
Sbjct: 10 DWCP 13


>sp|Y1331_ARCFU|UNCHARACTERIZED protein AF_1331|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 WCPF 8
WCPF
Sbjct: 59 WCPF 62


>sp|PURO_METVS|IMP cyclohydrolase|Methanococcus vannielii (strain ATCC 35089

Query: 2 PEDWCPF 8
PED C F
Sbjct: 168 PEDLCKF 174


>sp|SYK1_METAC|LYSINE--TRNA ligase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 EDWCPF 8
EDW PF
Sbjct: 160 EDWSPF 165


>sp|OFOB1_AERPE|2-OXOACID:FERREDOXIN oxidoreductase 1, subunit beta|Aeropyrum pernix (strain ATCC

Query: 4 DWCP 7
DWCP
Sbjct: 16 DWCP 19


>sp|RS19E_PYRFU|SMALL ribosomal subunit protein eS19|Pyrococcus furiosus (strain ATCC

Query: 2 PEDWCPFAR 10
P +W PF +
Sbjct: 28 PPEWAPFVK 36


>sp|RS19E_PYRHO|SMALL ribosomal subunit protein eS19|Pyrococcus horikoshii (strain ATCC

Query: 2 PEDWCPFAR 10
P +W PF +
Sbjct: 28 PPEWAPFVK 36


>sp|RS19E_PYRAB|SMALL ribosomal subunit protein eS19|Pyrococcus abyssi (strain GE5 /

Query: 2 PEDWCPFAR 10
P +W PF +
Sbjct: 28 PPEWAPFVK 36


>sp|SYTE_SACS2|THREONINE--TRNA ligase editing subunit|Saccharolobus solfataricus (strain ATCC

Query: 1 APEDWCPF 8
A DW PF
Sbjct: 321 AGTDWIPF 328


>sp|DPOL2_METTH|DNA polymerase PolB subunit 2|Methanothermobacter thermautotrophicus

Query: 4 DWCPFAR 10
DW P A+
Sbjct: 68 DWAPIAK 74


>sp|ACDA2_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus fulgidus

Query: 2 PEDWCPFAR 10
P+DW F R
Sbjct: 730 PDDWHLFVR 738


>sp|RS19E_THEKO|SMALL ribosomal subunit protein eS19|Thermococcus kodakarensis (strain

Query: 2 PEDWCPFAR 10
P +W PF +
Sbjct: 28 PPEWAPFVK 36


>sp|RL24_NANEQ|LARGE ribosomal subunit protein uL24|Nanoarchaeum equitans (strain

Query: 2 PEDWCP 7
P DW P
Sbjct: 9 PSDWSP 14


>sp|RS19_PYRAE|SMALL ribosomal subunit protein uS19|Pyrobaculum aerophilum (strain

Query: 2 PEDWCPF 8
PE+W F
Sbjct: 23 PEEWATF 29


>sp|ACDA_METSH|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanothrix

Query: 2 PEDWCPFAR 10
P+DW F R
Sbjct: 728 PDDWHLFVR 736


>sp|RS19_PYRAR|SMALL ribosomal subunit protein uS19|Pyrobaculum arsenaticum (strain

Query: 2 PEDWCPF 8
PE+W F
Sbjct: 24 PEEWATF 30


>sp|SYK_METJA|LYSINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PEDWCP 7
P+DW P
Sbjct: 161 PDDWWP 166


>sp|CPGS_METKA|CYCLIC 2,3-diphosphoglycerate synthetase|Methanopyrus kandleri (strain

Query: 3 EDWCPFAR 10
E WCP R
Sbjct: 114 EYWCPDLR 121


>sp|THYX_HALMA|FLAVIN-DEPENDENT thymidylate synthase|Haloarcula marismortui (strain ATCC 43049

Query: 4 DWCP 7
DWCP
Sbjct: 225 DWCP 228


>sp|CBIZ_HALSA|ADENOSYLCOBINAMIDE amidohydrolase|Halobacterium salinarum (strain ATCC 700922

Query: 2 PEDWCP 7
P+DW P
Sbjct: 41 PDDWAP 46




39|SequenceR|200|191|FTAKIAPEDW

>sp|RL24_PYRAR|LARGE ribosomal subunit protein uL24|Pyrobaculum arsenaticum (strain

Query: 1 FTAKIAPE 8
F AK++PE
Sbjct: 28 FNAKLSPE 35


>sp|RL24_PYRAE|LARGE ribosomal subunit protein uL24|Pyrobaculum aerophilum (strain

Query: 1 FTAKIAPE 8
F AK++PE
Sbjct: 28 FNAKLSPE 35


>sp|AATD_METMA|A-TYPE ATP synthase subunit D|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 FTAKIAPE 8
FTAK +PE
Sbjct: 83 FTAKESPE 90


>sp|TRPA_SULAC|TRYPTOPHAN synthase alpha chain|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 FTAKIAPED 9
FTA + P+D
Sbjct: 138 FTAPLMPDD 146


>sp|SYW_PYRFU|TRYPTOPHAN--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 FTAKIAPEDW 10
+T K+A E W
Sbjct: 366 YTGKLAQEQW 375


>sp|CBIN_ARCFU|COBALT transport protein CbiN|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 FTAKIAPEDW 10
F AK+ E+W
Sbjct: 13 FAAKVTAEEW 22




40|SequenceR|205|196|VLSIDFTAKI

>sp|Y415_ARCFU|UNCHARACTERIZED protein AF_0415|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 IDFTAKI 10
IDF+AKI
Sbjct: 27 IDFSAKI 33


>sp|RNH2_PYRIL|RIBONUCLEASE HII|Pyrobaculum islandicum (strain DSM 4184

Query: 2 LSIDFTAKI 10
L +DFTA++
Sbjct: 81 LELDFTARL 89


>sp|RNH2_PYRNV|RIBONUCLEASE HII|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 LSIDFTAKI 10
L +D+TAK+
Sbjct: 84 LELDYTAKL 92


>sp|TRF2_THEAC|TRICORN protease-interacting factor F2|Thermoplasma acidophilum (strain

Query: 1 VLSIDFTAKI 10
V+ IDF AK+
Sbjct: 75 VIDIDFHAKV 84


>sp|CHEB1_METAC|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase 1|Methanosarcina

Query: 3 SIDFTAK 9
+IDFTAK
Sbjct: 98 AIDFTAK 104


>sp|TRPCD_ARCFU|TRYPTOPHAN biosynthesis protein TrpCD|Archaeoglobus fulgidus (strain ATCC

Query: 3 SIDFTAKI 10
SID TAKI
Sbjct: 165 SIDVTAKI 172


>sp|TRF2_THEVO|TRICORN protease-interacting factor F2|Thermoplasma volcanium (strain

Query: 1 VLSIDFTAKI 10
V+ IDF AK+
Sbjct: 75 VVDIDFHAKV 84


>sp|Y343_METJA|UNCHARACTERIZED protein MJ0343|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 SIDFTAKI 10
+ID+TAK+
Sbjct: 787 TIDYTAKL 794




41|SequenceR|210|201|RDKPVVLSID

>sp|CDC45_SULAC|CELL division control protein 45|Sulfolobus acidocaldarius (strain ATCC

Query: 1 RDKPVVL 7
RDKPVVL
Sbjct: 309 RDKPVVL 315


>sp|THII_DESA1|TRNA sulfurtransferase|Desulfurococcus amylolyticus (strain DSM 18924

Query: 1 RDKPVVL 7
RDKPVVL
Sbjct: 436 RDKPVVL 442


>sp|KPTA1_ARCFU|PROBABLE RNA 2'-phosphotransferase 1|Archaeoglobus fulgidus (strain ATCC

Query: 2 DKPVVLSID 10
D P+VL ID
Sbjct: 167 DTPIVLEID 175


>sp|AMPD_ARCFU|ANHYDROMEVALONATE phosphate decarboxylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 DKPVVLSID 10
DKPV+L+++
Sbjct: 52 DKPVILNVE 60


>sp|ASST_METAC|L-ASPARTATE semialdehyde sulfurtransferase|Methanosarcina acetivorans (strain

Query: 1 RDKPVVLSID 10
RDKPV+ ++
Sbjct: 301 RDKPVIKQVN 310


>sp|Y1598_METJA|UPF0284 protein MJ1598|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RDKPVVLS 8
R+KPV+L+
Sbjct: 230 RNKPVILA 237


>sp|SPEB_METJA|AGMATINASE jannaschii (strain ATCC 43067

Query: 2 DKPVVLSID 10
DKP+ ++ID
Sbjct: 203 DKPIYVTID 211


>sp|Y912_ARCFU|UNCHARACTERIZED protein AF_0912|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 KPVVLSID 10
+PVV+SID
Sbjct: 238 EPVVVSID 245


>sp|SERA_METJA|D-3-PHOSPHOGLYCERATE dehydrogenase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 DKPVVLSID 10
+KPV+L +D
Sbjct: 432 NKPVILEVD 440


>sp|SYM_METKA|METHIONINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 DKPVVLSID 10
D+P +L+ID
Sbjct: 647 DEPALLTID 655


>sp|ASPG_THEKO|L-ASPARAGINASE kodakarensis (strain ATCC BAA-918

Query: 1 RDKPVVLS 8
R+KPVV++
Sbjct: 254 REKPVVMT 261


>sp|CBIA_HALMA|COBYRINATE a,c-diamide synthase|Haloarcula marismortui (strain ATCC 43049

Query: 2 DKPVVLSID 10
D PVVL +D
Sbjct: 105 DLPVVLVVD 113


>sp|Y449_METJA|UNCHARACTERIZED transporter MJ0449|Methanocaldococcus jannaschii (strain ATCC

Query: 2 DKPVVLSI 9
+KP++LSI
Sbjct: 5 EKPLILSI 12




42|SequenceR|215|206|NSLAVRDKPV

>sp|Y1421_ARCFU|UPF0182 protein AF_1421|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 SLAVRDKP 9
+LA+ DKP
Sbjct: 683 TLAIEDKP 690


>sp|THSA_SULTO|CHAPERONIN subunit alpha|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 NSLAVRDK 8
NSLA RD+
Sbjct: 149 NSLATRDQ 156


>sp|GLCD1_VULM7|GLUCOSE 1-dehydrogenase 1|Vulcanisaeta moutnovskia (strain 768-28)

Query: 1 NSLAVRDKP 9
+SLA+RD P
Sbjct: 12 DSLALRDMP 20




43|SequenceR|220|211|DIVNMNSLAV

>sp|DHYS_THEON|PROBABLE deoxyhypusine synthase|Thermococcus onnurineus (strain NA1)

Query: 1 DIVNMNSLAV 10
DIV +N+LAV
Sbjct: 241 DIVKLNNLAV 250


>sp|DHYS_THEKO|PROBABLE deoxyhypusine synthase|Thermococcus kodakarensis (strain ATCC

Query: 1 DIVNMNSLAV 10
DIV +N+LAV
Sbjct: 241 DIVKLNNLAV 250


>sp|DHYS_THEGJ|PROBABLE deoxyhypusine synthase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 DIVNMNSLAV 10
DIV +N+LAV
Sbjct: 241 DIVKLNNLAV 250


>sp|DHYS_PYRFU|PROBABLE deoxyhypusine synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 DIVNMNSLAV 10
DIV +N+LAV
Sbjct: 241 DIVKLNNLAV 250


>sp|DHYS_PYRHO|PROBABLE deoxyhypusine synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 DIVNMNSLAV 10
DIV +N+LA+
Sbjct: 240 DIVKLNNLAI 249


>sp|DHYS_PYRAB|PROBABLE deoxyhypusine synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 DIVNMNSLAV 10
DIV +N+LA+
Sbjct: 240 DIVKLNNLAI 249


>sp|THSA_SULTO|CHAPERONIN subunit alpha|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 DIVNMNSLA 9
D+ N+NSLA
Sbjct: 144 DVSNLNSLA 152


>sp|KCY_SACI6|CYTIDYLATE kinase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 DIVNMNSLA 9
DI+N+N +A
Sbjct: 45 DIINLNKVA 53


>sp|KCY_SACI4|CYTIDYLATE kinase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 DIVNMNSLA 9
DI+N+N +A
Sbjct: 45 DIINLNKVA 53


>sp|KCY_SACI3|CYTIDYLATE kinase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 DIVNMNSLA 9
DI+N+N +A
Sbjct: 45 DIINLNKVA 53


>sp|KCY_SACI2|CYTIDYLATE kinase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 DIVNMNSLA 9
DI+N+N +A
Sbjct: 45 DIINLNKVA 53


>sp|KCY_SACI7|CYTIDYLATE kinase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 DIVNMNSLA 9
DI+N+N +A
Sbjct: 45 DIINLNKVA 53


>sp|KCY_SACI1|CYTIDYLATE kinase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 DIVNMNSLA 9
DI+N+N +A
Sbjct: 45 DIINLNKVA 53




44|SequenceR|225|216|PYPKRDIVNM

>sp|TRPD_METBF|ANTHRANILATE phosphoribosyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 3 PKRDIVNM 10
PKRDIV M
Sbjct: 283 PKRDIVVM 290


>sp|AROB_PYRAB|3-DEHYDROQUINATE synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 PYPKRDIV 8
PYP +DI+
Sbjct: 282 PYPPKDII 289


>sp|DPOL2_SACS2|DNA polymerase 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PYPKRDIVNM 10
PYP R I NM
Sbjct: 506 PYPTRYIANM 515


>sp|FTTA_LOKSG|TRANSCRIPTION termination factor FttA|Lokiarchaeum sp. (strain GC14_75)

Query: 1 PYPKRDIVN 9
PY KRD+ N
Sbjct: 292 PYSKRDVKN 300


>sp|TRPD_METB6|ANTHRANILATE phosphoribosyltransferase|Methanoregula boonei (strain DSM 21154

Query: 1 PYPKRDIVNM 10
P P RDIV M
Sbjct: 284 PGPARDIVLM 293


>sp|TRPD_HALSA|ANTHRANILATE phosphoribosyltransferase|Halobacterium salinarum (strain ATCC

Query: 3 PKRDIV 8
PKRDIV
Sbjct: 283 PKRDIV 288


>sp|TRPD_HALS3|ANTHRANILATE phosphoribosyltransferase|Halobacterium salinarum (strain ATCC

Query: 3 PKRDIV 8
PKRDIV
Sbjct: 283 PKRDIV 288


>sp|Y513_METJA|UNCHARACTERIZED protein MJ0513|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PYPKRDI 7
PYPK+D+
Sbjct: 54 PYPKKDV 60


>sp|CBID_METKA|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 3 PKRDIVN 9
P RDIVN
Sbjct: 249 PSRDIVN 255


>sp|PRNK_METJA|POLYRIBONUCLEOTIDE 5'-hydroxyl-kinase MJ1315|Methanocaldococcus jannaschii (strain

Query: 4 KRDIVNM 10
KRD+VNM
Sbjct: 269 KRDLVNM 275


>sp|COOS1_METMA|CARBON monoxide dehydrogenase 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PYPKRDIVNM 10
P PK+ VN+
Sbjct: 242 PEPKKSTVNL 251


>sp|COOS1_METAC|CARBON monoxide dehydrogenase 1|Methanosarcina acetivorans (strain ATCC

Query: 1 PYPKRDIVNM 10
P PK+ VN+
Sbjct: 242 PEPKKSTVNL 251


>sp|TRPD_HALWD|ANTHRANILATE phosphoribosyltransferase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 PKRDIV 8
PKRDI+
Sbjct: 285 PKRDII 290


>sp|SYT_PYRNV|THREONINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 PYPKRDIVN 9
PY R+IVN
Sbjct: 86 PYAAREIVN 94


>sp|PORA_METJA|PYRUVATE synthase subunit PorA|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PYPKRDI 7
P+PK D+
Sbjct: 305 PFPKEDV 311


>sp|GLYA_PYRAE|SERINE hydroxymethyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PYPKRDIVN 9
P+P R+I N
Sbjct: 176 PHPVREIAN 184


>sp|RPA_METTH|REPLICATION factor A|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 YPKRDIVNM 10
YP RDI ++
Sbjct: 644 YPHRDIADL 652


>sp|FWDE_METJA|FERREDOXIN-TYPE protein FwdE|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YPKRDIVNM 10
YPK I+N+
Sbjct: 46 YPKEKILNV 54


>sp|Y275_METJA|UNCHARACTERIZED protein MJ0275|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PYPKRDI 7
YP+RDI
Sbjct: 139 EYPERDI 145


>sp|LONB_METJA|ARCHAEAL Lon protease|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PYPKRDI 7
P PK+DI
Sbjct: 522 PLPKKDI 528




45|SequenceR|230|221|LNEDDPYPKR

>sp|HLY_NATA1|HALOLYSIN asiatica (strain ATCC 700177

Query: 2 NEDDPYP 8
N+ DPYP
Sbjct: 185 NDGDPYP 191


>sp|PYRG_METBF|CTP synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 LNEDDPYP 8
+ED PYP
Sbjct: 404 FDEDSPYP 411


>sp|GLCD3_SACS2|GLUCOSE 1-dehydrogenase 3|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LNEDDPYP 8
LN+ DP+P
Sbjct: 213 LNKRDPFP 220


>sp|HLY_HALMT|HALOLYSIN mediterranei (strain ATCC 33500

Query: 2 NEDDPYP 8
N+ DPYP
Sbjct: 179 NDGDPYP 185


>sp|RFCL_METTH|REPLICATION factor C large subunit|Methanothermobacter thermautotrophicus

Query: 1 LNEDDPYPKR 10
L +DPY KR
Sbjct: 133 LTANDPYSKR 142


>sp|PYRG_METMA|CTP synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LNEDDPYP 8
+ED PYP
Sbjct: 404 FDEDTPYP 411


>sp|PYRG_METAC|CTP synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 LNEDDPYP 8
+ED PYP
Sbjct: 404 FDEDTPYP 411


>sp|Y878_METJA|UNCHARACTERIZED lipoprotein MJ0878|Methanocaldococcus jannaschii (strain ATCC

Query: 2 NEDDPYP 8
N+DDP P
Sbjct: 93 NKDDPVP 99


>sp|SYH_METMA|HISTIDINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LNEDDPYPK 9
+NE P+PK
Sbjct: 88 VNELQPFPK 96


>sp|SYH_METAC|HISTIDINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 LNEDDPYPK 9
+NE P+PK
Sbjct: 88 VNELQPFPK 96


>sp|HMGCS_PICTO|HYDROXYMETHYLGLUTARYL-COA synthase|Picrophilus torridus (strain ATCC 700027

Query: 3 EDDPYPK 9
E +PYPK
Sbjct: 189 EGEPYPK 195


>sp|FWDF_METJA|POLYFERREDOXIN protein FwdF|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LNEDDPYPK 9
+ ED+ YPK
Sbjct: 97 IKEDERYPK 105


>sp|THII_SULAC|PROBABLE tRNA sulfurtransferase|Sulfolobus acidocaldarius (strain ATCC

Query: 1 LNEDDPYPK 9
LN DD Y K
Sbjct: 49 LNTDDDYSK 57


>sp|PYRH_PYRCJ|URIDYLATE kinase|Pyrobaculum calidifontis (strain DSM 21063

Query: 4 DDPYPK 9
DD YPK
Sbjct: 79 DDAYPK 84


>sp|SYFB_METKA|PHENYLALANINE--TRNA ligase beta subunit|Methanopyrus kandleri (strain AV19 /

Query: 2 NEDDPYPKR 10
N+ PYP+R
Sbjct: 467 NKHRPYPQR 475


>sp|ENCP1_PYRFU|FERRITIN-LIKE-ENCAPSULIN shell fusion protein|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LNEDDPYPK 9
+N D PY K
Sbjct: 9 INRDKPYTK 17




46|SequenceR|235|226|FKVEVLNEDD

>sp|GUAAA_METMA|GMP synthase [glutamine-hydrolyzing] subunit A|Methanosarcina mazei

Query: 2 KVEVLNEDD 10
+VEVL EDD
Sbjct: 105 EVEVLEEDD 113


>sp|GUAAA_METTH|GMP synthase [glutamine-hydrolyzing] subunit A|Methanothermobacter

Query: 2 KVEVLNEDD 10
++E+L+EDD
Sbjct: 103 ELEILDEDD 111


>sp|PGP1_SACS2|PHOSPHOGLYCOLATE phosphatase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 FKVEVLNEDD 10
FKV V N DD
Sbjct: 185 FKVAVGNADD 194


>sp|SYDND_ARCFU|ASPARTATE--TRNA(ASP/ASN) ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 VEVLNEDD 10
+EVLNE D
Sbjct: 93 IEVLNEAD 100


>sp|PURP_IGNH4|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Ignicoccus hospitalis (strain KIN4/I

Query: 4 EVLNED 9
EVLNED
Sbjct: 69 EVLNED 74




47|SequenceR|240|231|VPTRAFKVEV

>sp|SURE_PICTO|5'-NUCLEOTIDASE SurE|Picrophilus torridus (strain ATCC 700027

Query: 1 VPTRAFKVE 9
VP RAFK +
Sbjct: 48 VPLRAFKFD 56




48|SequenceR|245|236|LYTSMVPTRA

***** No hits found ******


49|SequenceR|250|241|VVFAVLYTSM

>sp|Y2160_ARCFU|UNCHARACTERIZED protein AF_2160|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 VFAVLYTSM 10
VFA LYTS+
Sbjct: 16 VFAALYTSI 24


>sp|DPHB_THEON|DIPHTHINE synthase|Thermococcus onnurineus (strain NA1)

Query: 1 VVFAVLYTSM 10
+VFA YTS+
Sbjct: 29 LVFAEFYTSL 38


>sp|DPHB_THEKO|DIPHTHINE synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 VFAVLYTSM 10
VFA YTS+
Sbjct: 30 VFAEFYTSL 38




50|SequenceR|255|246|FDYEGVVFAV

>sp|RGYR_PYRAB|REVERSE gyrase|Pyrococcus abyssi (strain GE5 /

Query: 2 DYEGVVFAV 10
DYE +VFAV
Sbjct: 39 DYEKLVFAV 47


>sp|GLMM_THEKO|PROBABLE phosphoglucosamine mutase|Thermococcus kodakarensis (strain ATCC

Query: 1 FDYEGVV 7
FDYEG++
Sbjct: 388 FDYEGLI 394


>sp|IORA_ARCFU|INDOLEPYRUVATE oxidoreductase subunit IorA|Archaeoglobus fulgidus (strain ATCC

Query: 2 DYEGVV 7
DYEG+V
Sbjct: 354 DYEGIV 359


>sp|KAE1_METAR|TRNA N6-adenosine threonylcarbamoyltransferase|Methanocella arvoryzae

Query: 1 FDYEGVVFA 9
+D++GV F+
Sbjct: 66 YDFDGVAFS 74


>sp|HEM3_PICTO|PROBABLE porphobilinogen deaminase|Picrophilus torridus (strain ATCC 700027

Query: 2 DYEGVVFA 9
DY+G++ A
Sbjct: 156 DYDGIIMA 163


>sp|ADEC_METBU|ADENINE deaminase|Methanococcoides burtonii (strain DSM 6242

Query: 2 DYEGVVF 8
DY GVVF
Sbjct: 178 DYPGVVF 184


>sp|Y1397_METJA|UNCHARACTERIZED protein MJ1397|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FDYEGVVF 8
++Y GVVF
Sbjct: 28 YEYRGVVF 35




51|SequenceR|260|251|SRTEVFDYEG

>sp|PRIS_METB6|DNA primase small subunit PriS|Methanoregula boonei (strain DSM 21154

Query: 2 RTEVFDY 8
RTE+FDY
Sbjct: 56 RTELFDY 62


>sp|Y1420_ARCFU|UNCHARACTERIZED protein AF_1420|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 TEVFDYE 9
TEVFDY+
Sbjct: 98 TEVFDYQ 104


>sp|Y1303_METHJ|UPF0182 protein Mhun_1303|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 SRTEVFDY 8
+RTE FDY
Sbjct: 475 TRTEEFDY 482


>sp|FLAB4_PYRHO|FLAGELLIN B4|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 EVFDYEG 10
+VF+YEG
Sbjct: 168 DVFEYEG 174


>sp|FOLD_NITMS|BIFUNCTIONAL protein FolD|Nitrosopumilus maritimus (strain SCM1)

Query: 4 EVFDYEG 10
E+FDY G
Sbjct: 147 EMFDYHG 153


>sp|GLMM_THEKO|PROBABLE phosphoglucosamine mutase|Thermococcus kodakarensis (strain ATCC

Query: 4 EVFDYEG 10
+ FDYEG
Sbjct: 386 KTFDYEG 392


>sp|NAH1_METJA|NA(+)/H(+) antiporter 1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SRTEVFDYEG 10
S E+F+Y G
Sbjct: 53 SAMEIFEYAG 62


>sp|CBID_SACI6|COBALT-PRECORRIN-5B C(1)-methyltransferase|Saccharolobus islandicus (strain M.16.4 /

Query: 5 VFDYEG 10
+FDY+G
Sbjct: 336 IFDYDG 341


>sp|CBID_SACI4|COBALT-PRECORRIN-5B C(1)-methyltransferase|Saccharolobus islandicus (strain M.14.25 /

Query: 5 VFDYEG 10
+FDY+G
Sbjct: 336 IFDYDG 341


>sp|CBID_SACI3|COBALT-PRECORRIN-5B C(1)-methyltransferase|Saccharolobus islandicus (strain M.16.27)

Query: 5 VFDYEG 10
+FDY+G
Sbjct: 336 IFDYDG 341


>sp|MRE11_METMA|DNA double-strand break repair protein|Methanosarcina mazei (strain

Query: 1 SRTEVFDYEG 10
S+ +FDY G
Sbjct: 131 SKIPLFDYSG 140


>sp|CBID_SACI7|COBALT-PRECORRIN-5B C(1)-methyltransferase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 5 VFDYEG 10
+FDY+G
Sbjct: 336 IFDYDG 341


>sp|CBID_SACI1|COBALT-PRECORRIN-5B C(1)-methyltransferase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 5 VFDYEG 10
+FDY+G
Sbjct: 336 IFDYDG 341


>sp|CBID_SACS2|COBALT-PRECORRIN-5B C(1)-methyltransferase|Saccharolobus solfataricus (strain ATCC

Query: 5 VFDYEG 10
+FDY+G
Sbjct: 336 IFDYDG 341


>sp|CDC6C_HALMA|ORC1-TYPE DNA replication protein 3|Haloarcula marismortui (strain ATCC 43049

Query: 3 TEVFDYE 9
E+FDYE
Sbjct: 107 AEIFDYE 113


>sp|SYK_ARCFU|LYSINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 EVFDYE 9
E+FDYE
Sbjct: 248 EIFDYE 253


>sp|Y441_NANEQ|PROTEIN NEQ441|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 RTEVFDYEG 10
+TEV+ +EG
Sbjct: 166 KTEVYVFEG 174


>sp|CDC66_HALSA|ORC1-TYPE DNA replication protein 6|Halobacterium salinarum (strain ATCC

Query: 4 EVFDYE 9
E+FDYE
Sbjct: 108 EIFDYE 113


>sp|MAAL_HALMA|METHYLASPARTATE ammonia-lyase|Haloarcula marismortui (strain ATCC 43049

Query: 2 RTEVFDY 8
RTEV DY
Sbjct: 254 RTEVTDY 260




52|SequenceR|265|256|CVGDKSRTEV

>sp|TRM1_SACS2|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus solfataricus

Query: 1 CVGDKSRT 8
C+GD SRT
Sbjct: 347 CLGDASRT 354


>sp|TRM1_SACI7|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 1 CVGDKSRT 8
C+GD S+T
Sbjct: 347 CLGDASKT 354


>sp|TRM1_SACI6|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 1 CVGDKSRT 8
C+GD S+T
Sbjct: 347 CLGDASKT 354


>sp|TRM1_SACI4|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 1 CVGDKSRT 8
C+GD S+T
Sbjct: 347 CLGDASKT 354


>sp|TRM1_SACI3|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 1 CVGDKSRT 8
C+GD S+T
Sbjct: 347 CLGDASKT 354


>sp|TRM1_SACI2|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 1 CVGDKSRT 8
C+GD S+T
Sbjct: 347 CLGDASKT 354


>sp|TRM1_SACI1|TRNA (guanine(26)-N(2))-dimethyltransferase|Saccharolobus islandicus

Query: 1 CVGDKSRT 8
C+GD S+T
Sbjct: 347 CLGDASKT 354


>sp|FTTA_PYRHO|TRANSCRIPTION termination factor FttA|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 VGDKSRTEV 10
VG++ RTEV
Sbjct: 570 VGEEGRTEV 578


>sp|FTTA_PYRAB|TRANSCRIPTION termination factor FttA|Pyrococcus abyssi (strain GE5 /

Query: 2 VGDKSRTEV 10
VG++ RTEV
Sbjct: 567 VGEEGRTEV 575


>sp|RL10_AERPE|LARGE ribosomal subunit protein uL10|Aeropyrum pernix (strain ATCC 700893

Query: 3 GDKSRTEV 10
GDK+ TE+
Sbjct: 121 GDKAETEI 128


>sp|FTTA_THEKO|TRANSCRIPTION termination factor FttA|Thermococcus kodakarensis (strain ATCC

Query: 2 VGDKSRTEV 10
VG+ RTEV
Sbjct: 567 VGEDGRTEV 575


>sp|GCH3_HALLT|GTP cyclohydrolase III|Halorubrum lacusprofundi (strain ATCC 49239

Query: 4 DKSRTEV 10
D+SRTEV
Sbjct: 115 DESRTEV 121


>sp|RS9_THESM|SMALL ribosomal subunit protein uS9|Thermococcus sibiricus (strain DSM

Query: 1 CVGDKSRTE 9
VGD RTE
Sbjct: 115 LVGDSRRTE 123


>sp|HEM1_NATPD|GLUTAMYL-TRNA reductase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 VGDKSRTE 9
VG+++RTE
Sbjct: 144 VGERARTE 151




53|SequenceR|270|261|TYVRVCVGDK

>sp|HIS8_METMJ|HISTIDINOL-PHOSPHATE aminotransferase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 YVRVCVGD 9
Y+RVC+G+
Sbjct: 331 YIRVCIGE 338


>sp|HIS8_METPE|HISTIDINOL-PHOSPHATE aminotransferase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 YVRVCVGD 9
YVRV +GD
Sbjct: 330 YVRVSIGD 337


>sp|SYL_THEVO|LEUCINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 YVRVCVGDK 10
YV++ +GDK
Sbjct: 257 YVKIKIGDK 265


>sp|PFDA_METKA|PREFOLDIN subunit alpha|Methanopyrus kandleri (strain AV19 /

Query: 1 TYVRVCVGD 9
++VR CV D
Sbjct: 72 SFVRACVTD 80


>sp|MTNA_AERPE|PUTATIVE methylthioribose-1-phosphate isomerase|Aeropyrum pernix (strain

Query: 2 YVRVCVGD 9
YVR+ +GD
Sbjct: 323 YVRITLGD 330


>sp|COFH_META3|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanococcus aeolicus (strain ATCC

Query: 2 YVRVCVGD 9
+ +CVGD
Sbjct: 58 FTNICVGD 65


>sp|Y087_METJA|PUTATIVE ABC transporter permease protein|Methanocaldococcus jannaschii

Query: 3 VRVCVG 8
VR+C+G
Sbjct: 285 VRICIG 290


>sp|DP2L_METTH|DNA polymerase II large subunit|Methanothermobacter thermautotrophicus

Query: 2 YVRVCVGDK 10
Y R C GD+
Sbjct: 739 YTRDCYGDE 747


>sp|COBS_HALLT|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 TYVRVCVGD 9
T VCVGD
Sbjct: 157 TATLVCVGD 165


>sp|ABLA_METMP|L-LYSINE 2,3-aminomutase|Methanococcus maripaludis (strain DSM 14266

Query: 4 RVCVGD 9
R+C+GD
Sbjct: 394 RMCIGD 399


>sp|DP2L_HALMA|DNA polymerase II large subunit|Haloarcula marismortui (strain ATCC 43049

Query: 1 TYVRVCVGDK 10
TYV C GD+
Sbjct: 1141 TYVGQCDGDE 1150


>sp|RL21_SULTO|LARGE ribosomal subunit protein eL21|Sulfurisphaera tokodaii (strain

Query: 3 VRVCVGDK 10
VRV +GDK
Sbjct: 76 VRVTLGDK 83


>sp|Y3021_SACS2|UNCHARACTERIZED protein SSO3021|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 YVRVCVGDK 10
YV+ VGDK
Sbjct: 239 YVKGLVGDK 247


>sp|Y3407_METJA|UNCHARACTERIZED protein MJECS07|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YVRVCVGDK 10
Y++ +GDK
Sbjct: 319 YIKTTIGDK 327


>sp|MBHLA_PYRFU|MEMBRANE-BOUND hydrogenase subunit alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 2 YVRVCVGD 9
Y+RV VG+
Sbjct: 97 YIRVIVGE 104




54|SequenceR|275|266|AKGVPTYVRV

>sp|FMDC_METWO|MOLYBDENUM-CONTAINING formylmethanofuran dehydrogenase 1 subunit|Methanothermobacter

Query: 2 KGVPTYVR 9
KGVP Y+R
Sbjct: 371 KGVPVYLR 378


>sp|FMDC_METTM|MOLYBDENUM-CONTAINING formylmethanofuran dehydrogenase 1 subunit|Methanothermobacter

Query: 2 KGVPTYVR 9
KGVP Y+R
Sbjct: 371 KGVPVYLR 378


>sp|FMDC_METTH|MOLYBDENUM-CONTAINING formylmethanofuran dehydrogenase 1 subunit|Methanothermobacter

Query: 2 KGVPTYVR 9
KGVP Y+R
Sbjct: 371 KGVPVYLR 378


>sp|Y1499_SULAC|PROBABLE glycosyltransferase Saci_1499|Sulfolobus acidocaldarius (strain

Query: 1 AKGVPTYVRV 10
A G+P YV V
Sbjct: 249 ASGIPIYVEV 258


>sp|TOP6B_THEKO|TYPE 2 DNA topoisomerase 6|Thermococcus kodakarensis (strain ATCC

Query: 3 GVPTYVRV 10
G+P YVRV
Sbjct: 55 GIPPYVRV 62


>sp|SEPS_METM5|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanococcus maripaludis (strain C5 /

Query: 1 AKGVPTYVR 9
A+GVPT +R
Sbjct: 458 AEGVPTGIR 466


>sp|TOP6B_THEGJ|TYPE 2 DNA topoisomerase 6|Thermococcus gammatolerans (strain DSM

Query: 3 GVPTYVRV 10
G+P Y+RV
Sbjct: 55 GIPPYIRV 62


>sp|UPPP_METBU|UNDECAPRENYL-DIPHOSPHATASE burtonii (strain DSM 6242

Query: 3 GVPTYVR 9
GVP YVR
Sbjct: 72 GVPDYVR 78


>sp|KCY_METAC|CYTIDYLATE kinase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 AKGVPTYVRV 10
AKGVP +++
Sbjct: 88 AKGVPNVLKI 97


>sp|AATC_METS3|A-TYPE ATP synthase subunit C|Methanobrevibacter smithii (strain ATCC

Query: 2 KGVPTYVRV 10
KGVP Y V
Sbjct: 85 KGVPDYADV 93


>sp|AAT_SULTO|ASPARTATE aminotransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 GVPTYVRV 10
GVP YV++
Sbjct: 139 GVPVYVKM 146


>sp|RL24_METS5|LARGE ribosomal subunit protein uL24|Metallosphaera sedula (strain ATCC

Query: 1 AKGVPTYVRV 10
A G P Y+++
Sbjct: 65 ADGTPVYIKI 74


>sp|TATC_METAR|SEC-INDEPENDENT protein translocase protein TatC|Methanocella arvoryzae (strain

Query: 1 AKGVPTYVRV 10
A VP+YV++
Sbjct: 54 AHAVPSYVKI 63


>sp|FPOO_METMA|F(420)H(2) dehydrogenase subunit O|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 AKGVPTYVRV 10
KG+PT + V
Sbjct: 8 GKGIPTVIPV 17




55|SequenceR|280|271|FKGQEAKGVP

>sp|QUEC_METBU|7-CYANO-7-DEAZAGUANINE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 FKGQEAKGVP 10
F G+EAK P
Sbjct: 132 FNGEEAKTFP 141


>sp|PYRC_METJA|DIHYDROOROTASE jannaschii (strain ATCC 43067

Query: 1 FKGQEAKGVP 10
F G E KG P
Sbjct: 397 FDGWEVKGFP 406


>sp|SYP_AERPE|PROLINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 5 EAKGVP 10
EAKGVP
Sbjct: 345 EAKGVP 350


>sp|SYP_PYRCJ|PROLINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 FKGQEAKGV 9
F G+E KGV
Sbjct: 301 FYGEEEKGV 309


>sp|Y787_METJA|UNCHARACTERIZED protein MJ0787|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 FKGQEAKGVP 10
FKG KG P
Sbjct: 157 FKGPPFKGCP 166


>sp|CMR2_PYRFU|CRISPR system Cmr subunit Cmr2|Pyrococcus furiosus (strain ATCC 43587

Query: 1 FKGQEAK 7
FKG+E+K
Sbjct: 145 FKGEESK 151


>sp|EF2_METRM|ELONGATION factor 2|Methanobrevibacter ruminantium (strain ATCC 35063

Query: 3 GQEAKGV 9
GQE KGV
Sbjct: 655 GQETKGV 661




56|SequenceR|285|276|AVELAFKGQE

>sp|Y1396_METJA|UNCHARACTERIZED protein MJ1396|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AVELAFKGQE 10
AVEL++ GQ+
Sbjct: 577 AVELSYNGQD 586


>sp|KAE1_THEPD|TRNA N6-adenosine threonylcarbamoyltransferase|Thermofilum pendens

Query: 3 ELAFKGQE 10
ELA KG+E
Sbjct: 186 ELALKGRE 193




57|SequenceR|290|281|PLTKAAVELA

>sp|CPGS_METTH|CYCLIC 2,3-diphosphoglycerate synthetase|Methanothermobacter

Query: 1 PLTKAAVE 8
P+T+AAVE
Sbjct: 20 PVTRAAVE 27




58|SequenceR|295|286|YDKYFPLTKA

>sp|GATE_METMA|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanosarcina mazei (strain ATCC

Query: 1 YDKYFPLTKA 10
Y KY PL +A
Sbjct: 475 YSKYLPLFEA 484


>sp|CPGS_METST|CYCLIC 2,3-diphosphoglycerate synthetase|Methanosphaera stadtmanae

Query: 2 DKYFPLTKA 10
+ YFP+TK+
Sbjct: 16 EHYFPVTKS 24


>sp|KAE1_STAMF|TRNA N6-adenosine threonylcarbamoyltransferase|Staphylothermus marinus

Query: 1 YDKYFP 6
YDKY P
Sbjct: 31 YDKYIP 36


>sp|DPHB_METLZ|DIPHTHINE synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 YDKYFPLT 8
Y K+FP+T
Sbjct: 139 YGKWFPMT 146


>sp|Y1404_METJA|UNCHARACTERIZED protein MJ1404|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YDKYFP 6
YDKY P
Sbjct: 392 YDKYHP 397


>sp|PURP_THEKO|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Thermococcus kodakarensis (strain

Query: 1 YDKYFPL 7
Y KYFP+
Sbjct: 37 YTKYFPV 43


>sp|GLPK_HALVD|GLYCEROL kinase|Haloferax volcanii (strain ATCC 29605

Query: 2 DKYFPLTKA 10
D YF TKA
Sbjct: 134 DAYFSATKA 142


>sp|PURP_PYRHO|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrococcus horikoshii (strain ATCC

Query: 1 YDKYFPL 7
Y KYFP+
Sbjct: 38 YTKYFPV 44


>sp|PURP_PYRFU|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrococcus furiosus (strain ATCC

Query: 1 YDKYFPL 7
Y KYFP+
Sbjct: 39 YTKYFPV 45


>sp|SYA_METAR|ALANINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 YDKYFPL 7
Y+KY+P+
Sbjct: 18 YEKYYPV 24


>sp|SYV_THEVO|VALINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 YDKYFP 6
+DKY+P
Sbjct: 469 FDKYYP 474


>sp|PURP_PYRAB|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrococcus abyssi (strain GE5 /

Query: 1 YDKYFPL 7
Y KYFP+
Sbjct: 42 YTKYFPV 48


>sp|SYV_THEAC|VALINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 YDKYFP 6
+DKY+P
Sbjct: 469 FDKYYP 474


>sp|HYPF_METJA|PROBABLE carbamoyltransferase HypF|Methanocaldococcus jannaschii (strain

Query: 1 YDKYF 5
YDKYF
Sbjct: 298 YDKYF 302


>sp|TRPB2_METAC|TRYPTOPHAN synthase beta chain 2|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 YDKYF 5
YDKYF
Sbjct: 433 YDKYF 437




59|SequenceR|300|291|YPVNFYDKYF

>sp|DP2L_METM7|DNA polymerase II large subunit|Methanococcus maripaludis (strain C7 /

Query: 1 YPVNFYDK 8
YP+ FY+K
Sbjct: 940 YPIEFYEK 947


>sp|MTRA_METHJ|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A|Methanospirillum hungatei JF-1

Query: 3 VNFYDKY 9
+ FYDKY
Sbjct: 205 IGFYDKY 211


>sp|DP2L_METJA|DNA polymerase II large subunit|Methanocaldococcus jannaschii (strain

Query: 1 YPVNFYDK 8
YP+ FY+K
Sbjct: 946 YPLEFYEK 953


>sp|Y1626_METJA|UNCHARACTERIZED protein MJ1626|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PVNFYDKYF 10
P NFY++ F
Sbjct: 326 PANFYNREF 334


>sp|SYDND_HALSA|ASPARTATE--TRNA(ASP/ASN) ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 YPVNFYDK 8
+PV +YDK
Sbjct: 175 FPVVYYDK 182


>sp|PYCA_ARCFU|PYRUVATE carboxylase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PVNFYDK 8
PVNFY +
Sbjct: 342 PVNFYPR 348


>sp|AATA_PYRHO|A-TYPE ATP synthase subunit A|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 VNFYDK 8
+NFYDK
Sbjct: 904 LNFYDK 909


>sp|AATA_PYRAB|A-TYPE ATP synthase subunit A|Pyrococcus abyssi (strain GE5 /

Query: 3 VNFYDK 8
+NFYDK
Sbjct: 957 LNFYDK 962


>sp|DNLI_CALMQ|DNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 YPVNFY 6
YP+N Y
Sbjct: 348 YPINLY 353


>sp|DNLI_SULAC|DNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 YPVNFY 6
YPVN Y
Sbjct: 343 YPVNVY 348


>sp|DP2L_METTP|DNA polymerase II large subunit|Methanothrix thermoacetophila (strain

Query: 1 YPVNFYD 7
YP+ FY+
Sbjct: 918 YPLEFYE 924


>sp|DP2L_METBU|DNA polymerase II large subunit|Methanococcoides burtonii (strain DSM

Query: 1 YPVNFYD 7
YP+ FY+
Sbjct: 954 YPLEFYE 960


>sp|DP2L_ARCFU|DNA polymerase II large subunit|Archaeoglobus fulgidus (strain ATCC

Query: 1 YPVNFYD 7
YP+ FY+
Sbjct: 952 YPLEFYE 958


>sp|SYDND_META3|ASPARTATE--TRNA(ASP/ASN) ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 YPVNFYDK 8
+P++++DK
Sbjct: 182 FPISYFDK 189


>sp|DP2L_METM6|DNA polymerase II large subunit|Methanococcus maripaludis (strain C6 /

Query: 1 YPVNFYDKYF 10
YP+ FY+K
Sbjct: 940 YPLEFYEKSL 949


>sp|DP2L_METM5|DNA polymerase II large subunit|Methanococcus maripaludis (strain C5 /

Query: 1 YPVNFYDKYF 10
YP+ FY+K
Sbjct: 940 YPLEFYEKSL 949


>sp|DP2L_METVS|DNA polymerase II large subunit|Methanococcus vannielii (strain ATCC

Query: 1 YPVNFYDKYF 10
YP+ FY+K
Sbjct: 940 YPLEFYEKSL 949


>sp|DNLI_SULTO|DNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 YPVNFY 6
YPVN Y
Sbjct: 343 YPVNVY 348


>sp|DP2L_METMP|DNA polymerase II large subunit|Methanococcus maripaludis (strain DSM

Query: 1 YPVNFYDKYF 10
YP+ FY+K
Sbjct: 940 YPLEFYEKSL 949


>sp|Y1141_METJA|UNCHARACTERIZED protein MJ1141|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 VNFYDKYF 10
+ FY+KY+
Sbjct: 80 IEFYNKYY 87


>sp|DP2L_PYRAB|DNA polymerase II large subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 YPVNFYDKYF 10
YP+ FY+ +
Sbjct: 1198 YPLEFYEATY 1207


>sp|SYA_METST|ALANINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 VNFYDKY 9
+NFYD +
Sbjct: 432 INFYDSH 438


>sp|TRPB2_METAC|TRYPTOPHAN synthase beta chain 2|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 YPVNFYDKYF 10
+ ++ YDKYF
Sbjct: 428 FDMSSYDKYF 437


>sp|DP2L_PYRHO|DNA polymerase II large subunit|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 YPVNFYDKYF 10
YP+ FY+ +
Sbjct: 1176 YPLEFYEATY 1185


>sp|DP2L_PYRFU|DNA polymerase II large subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 1 YPVNFYDKYF 10
YP+ FY+ +
Sbjct: 1011 YPLEFYEATY 1020


>sp|APE2_SACS2|LEUCYL aminopeptidase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 PVNFYDKYF 10
+ FY+KYF
Sbjct: 210 SIEFYEKYF 218


>sp|Y2119_ARCFU|UNCHARACTERIZED protein AF_2119|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 YPVNFYDKY 9
YPV FY ++
Sbjct: 224 YPVKFYAEF 232


>sp|FSR_METJA|COENZYME F420-dependent sulfite reductase|Methanocaldococcus jannaschii

Query: 5 FYDKYF 10
FY+KY+
Sbjct: 70 FYEKYY 75


>sp|HCP_METVS|HYDROXYLAMINE reductase|Methanococcus vannielii (strain ATCC 35089

Query: 3 VNFYDKY 9
VNF DKY
Sbjct: 70 VNFDDKY 76


>sp|SPEE_THEAC|POLYAMINE aminopropyltransferase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 PVNFYDKYF 10
PVN KYF
Sbjct: 245 PVNMSGKYF 253


>sp|APE1_SACS2|PROBABLE aminopeptidase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 VNFYDKYF 10
+ FY+KYF
Sbjct: 209 IEFYEKYF 216


>sp|ARCSA_THEAC|ARCHAEOSINE synthase subunit alpha|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 YPVNFYD 7
YP FYD
Sbjct: 293 YPARFYD 299


>sp|Y136_ARCFU|UNCHARACTERIZED protein AF_0136|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 VNFYDKYF 10
+N Y+KY+
Sbjct: 155 LNIYEKYY 162


>sp|TRPB2_METMA|TRYPTOPHAN synthase beta chain 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 6 YDKYF 10
YDKYF
Sbjct: 433 YDKYF 437


>sp|Y1599_METJA|UNCHARACTERIZED protein MJ1599|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 FYDKY 9
FYDKY
Sbjct: 226 FYDKY 230


>sp|TRF3_THEAC|TRICORN protease-interacting factor F3|Thermoplasma acidophilum (strain

Query: 3 VNFYDKYF 10
V FY+ YF
Sbjct: 203 VEFYENYF 210


>sp|RNZ_METM6|RIBONUCLEASE Z|Methanococcus maripaludis (strain C6 /

Query: 1 YPVNFYD 7
YP+N Y+
Sbjct: 110 YPINVYE 116


>sp|RNZ_METM7|RIBONUCLEASE Z|Methanococcus maripaludis (strain C7 /

Query: 1 YPVNFYD 7
YP+N Y+
Sbjct: 110 YPINVYE 116


>sp|RNZ_METM5|RIBONUCLEASE Z|Methanococcus maripaludis (strain C5 /

Query: 1 YPVNFYD 7
YP+N Y+
Sbjct: 110 YPINVYE 116


>sp|SYS2_METVS|TYPE-2 serine--tRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 PVNFYDK 8
PV F+DK
Sbjct: 332 PVKFFDK 338


>sp|DP2L_THEAC|DNA polymerase II large subunit|Thermoplasma acidophilum (strain ATCC

Query: 1 YPVNFYD 7
YPV FY+
Sbjct: 887 YPVLFYE 893




60|SequenceR|305|296|IKPLPYPVNF

>sp|COBD_ARCFU|PROBABLE cobalamin biosynthesis protein CobD|Archaeoglobus fulgidus

Query: 3 PLPYPVNF 10
P PYP+NF
Sbjct: 71 PFPYPLNF 78


>sp|RLME_METVS|RIBOSOMAL RNA large subunit methyltransferase|Methanococcus vannielii

Query: 1 IKPLPY 6
IKPLPY
Sbjct: 82 IKPLPY 87


>sp|TRPB1_THEKO|TRYPTOPHAN synthase beta chain 1|Thermococcus kodakarensis (strain ATCC

Query: 1 IKPLPYPV 8
+ P PYPV
Sbjct: 190 VGPYPYPV 197


>sp|RLME_METM6|RIBOSOMAL RNA large subunit methyltransferase|Methanococcus maripaludis

Query: 1 IKPLPY 6
+KPLPY
Sbjct: 82 VKPLPY 87


>sp|RLME_METM7|RIBOSOMAL RNA large subunit methyltransferase|Methanococcus maripaludis

Query: 1 IKPLPY 6
+KPLPY
Sbjct: 82 VKPLPY 87


>sp|RLME_METM5|RIBOSOMAL RNA large subunit methyltransferase|Methanococcus maripaludis

Query: 1 IKPLPY 6
+KPLPY
Sbjct: 82 VKPLPY 87


>sp|DNAG_PYRAB|DNA primase DnaG|Pyrococcus abyssi (strain GE5 /

Query: 1 IKPLPYP 7
+KPLP P
Sbjct: 344 VKPLPVP 350


>sp|OFOA1_AERPE|2-OXOACID:FERREDOXIN oxidoreductase 1, subunit alpha|Aeropyrum pernix (strain ATCC

Query: 2 KPLPYPVNF 10
+PL YP +F
Sbjct: 63 RPLYYPADF 71


>sp|BGAL_SACS2|BETA-GALACTOSIDASE solfataricus (strain ATCC 35092

Query: 3 PLPYPVNF 10
PLP P NF
Sbjct: 91 PLPRPQNF 98


>sp|GSA_NATPD|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 PLPYPV 8
P PYPV
Sbjct: 29 PQPYPV 34


>sp|COBS_METAC|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 KPLPYPVN 9
KPLP P N
Sbjct: 170 KPLPRPEN 177


>sp|RPO1C_METAC|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanosarcina acetivorans (strain

Query: 1 IKPLPYPVN 9
+K LP+P N
Sbjct: 10 LKDLPFPSN 18


>sp|RS4E_AERPE|SMALL ribosomal subunit protein eS4|Aeropyrum pernix (strain ATCC 700893

Query: 4 LPYPVNF 10
LPYPV F
Sbjct: 103 LPYPVKF 109


>sp|Y1209_CALMQ|PROTEIN Cmaq_1209|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 KPLPYPV 8
KPLP PV
Sbjct: 125 KPLPNPV 131


>sp|SYK_METTH|LYSINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 PLPYPVNF 10
P PYPV +
Sbjct: 276 PAPYPVPY 283


>sp|SYK_THEAC|LYSINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 PYPVNF 10
PYPV+F
Sbjct: 354 PYPVDF 359


>sp|SYK_METST|LYSINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 PLPYPVNF 10
P PYPV +
Sbjct: 258 PAPYPVPY 265


>sp|PRIS_HYPBU|DNA primase small subunit PriS|Hyperthermus butylicus (strain DSM 5456

Query: 2 KPLPYPVN 9
KP+P P N
Sbjct: 218 KPIPIPPN 225


>sp|Y1571_AERPE|UNCHARACTERIZED protein APE_1571.1|Aeropyrum pernix (strain ATCC 700893

Query: 3 PLPYPVN 9
P+PYP++
Sbjct: 230 PVPYPID 236


>sp|ARGDC_STAMF|ARGININE decarboxylase proenzyme|Staphylothermus marinus (strain ATCC 43588

Query: 1 IKPLPYPVNF 10
+KP Y VN+
Sbjct: 109 LKPKEYTVNY 118


>sp|GLCS_SACS2|GLUCOSE-BINDING protein GlcS|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 LPYPVNF 10
LP+P NF
Sbjct: 211 LPFPYNF 217


>sp|Y2119_ARCFU|UNCHARACTERIZED protein AF_2119|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 IKPLPYPV 8
+KP P PV
Sbjct: 332 LKPYPIPV 339




61|SequenceR|310|301|IAILDIKPLP

>sp|DNLI_METLZ|DNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 IAILDIKPLP 10
IAI++ KP+P
Sbjct: 297 IAIMNGKPMP 306


>sp|HIS6_PYRAE|IMIDAZOLE glycerol phosphate synthase subunit|Pyrobaculum aerophilum

Query: 1 IAILDIKPLP 10
IAILDI P
Sbjct: 50 IAILDITAAP 59


>sp|THIC1_METTH|PHOSPHOMETHYLPYRIMIDINE synthase 1|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 ILDIKPLP 10
ILD+ P+P
Sbjct: 110 ILDLSPIP 117


>sp|Y061_SULTO|PUTATIVE esterase STK_00610|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 IAILDIKP 8
+ ILD+KP
Sbjct: 19 VKILDVKP 26


>sp|RL10_THEVO|LARGE ribosomal subunit protein uL10|Thermoplasma volcanium (strain ATCC

Query: 1 IAILDIKP 8
+A+LDIKP
Sbjct: 172 MAMLDIKP 179


>sp|DNLI_METB6|DNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 IAILDIKPLP 10
IAI D +P+P
Sbjct: 297 IAIKDDRPMP 306


>sp|CAS7_METJA|CRISPR-ASSOCIATED protein Cas7/Cst2/DevR|Methanocaldococcus jannaschii (strain ATCC

Query: 1 IAILDIKPLP 10
IA++ KP+P
Sbjct: 256 IAVVSEKPIP 265


>sp|GCST_AERPE|PROBABLE aminomethyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 3 ILDIKPL 9
+LD+KPL
Sbjct: 168 LLDLKPL 174


>sp|PYRE_SACS2|OROTATE phosphoribosyltransferase|Saccharolobus solfataricus (strain ATCC

Query: 4 LDIKPLP 10
LD++PLP
Sbjct: 30 LDLRPLP 36


>sp|CAS1C_METHJ|CRISPR-ASSOCIATED endonuclease Cas1 3|Methanospirillum hungatei JF-1 (strain ATCC

Query: 5 DIKPLP 10
DIKP+P
Sbjct: 7 DIKPIP 12




62|SequenceR|315|306|AAFDAIAILD

>sp|SYA_METMJ|ALANINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 FDAIAILD 10
FD +A+LD
Sbjct: 534 FDGMAVLD 541




63|SequenceR|320|311|NEMAGAAFDA

>sp|KORB_METTM|2-OXOGLUTARATE synthase subunit KorB|Methanothermobacter marburgensis (strain

Query: 2 EMAGAAFDA 10
EMAG FD+
Sbjct: 39 EMAGVDFDS 47


>sp|Y538_METJA|UNCHARACTERIZED protein MJ0538|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 NEMAGAAFD 9
NE++GA F+
Sbjct: 243 NELSGAMFE 251


>sp|RS5_METST|SMALL ribosomal subunit protein uS5|Methanosphaera stadtmanae (strain

Query: 4 AGAAFDA 10
AGA FDA
Sbjct: 200 AGAVFDA 206


>sp|RTCA_CALMQ|RNA 3'-terminal phosphate cyclase|Caldivirga maquilingensis (strain

Query: 4 AGAAFD 9
AGAAFD
Sbjct: 283 AGAAFD 288




64|SequenceR|325|316|TVLGWNEMAG

>sp|SYFA_SULTO|PHENYLALANINE--TRNA ligase alpha subunit|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 LGWNEMAG 10
LGW EMAG
Sbjct: 402 LGWVEMAG 409


>sp|SYFA_METS5|PHENYLALANINE--TRNA ligase alpha subunit|Metallosphaera sedula (strain ATCC 51363

Query: 3 LGWNEMAG 10
LGW EMAG
Sbjct: 403 LGWVEMAG 410


>sp|SYFA_SULAC|PHENYLALANINE--TRNA ligase alpha subunit|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 LGWNEMAG 10
LGW EM+G
Sbjct: 402 LGWVEMSG 409


>sp|HPPA_PYRAE|K(+)-INSENSITIVE pyrophosphate-energized proton pump|Pyrobaculum aerophilum (strain

Query: 2 VLGWNEMAG 10
+LGWN +AG
Sbjct: 616 LLGWNALAG 624


>sp|SYFA_SACS2|PHENYLALANINE--TRNA ligase alpha subunit|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 LGWNEMAG 10
LGW EM G
Sbjct: 404 LGWVEMCG 411


>sp|THIL_PYRAB|THIAMINE-MONOPHOSPHATE kinase|Pyrococcus abyssi (strain GE5 /

Query: 2 VLGWNEMAG 10
VLGW +AG
Sbjct: 296 VLGWEHLAG 304


>sp|HIS5_HALSA|IMIDAZOLE glycerol phosphate synthase subunit|Halobacterium salinarum (strain

Query: 3 LGWNEMA 9
+GWNE+A
Sbjct: 131 MGWNELA 137


>sp|HEM1_METS5|GLUTAMYL-TRNA reductase|Metallosphaera sedula (strain ATCC 51363

Query: 3 LGWNEM 8
LGWNE+
Sbjct: 31 LGWNEI 36


>sp|RFCS_THEKO|REPLICATION factor C small subunit|Thermococcus kodakarensis (strain ATCC

Query: 2 VLGWNEMA 9
++ WNEMA
Sbjct: 430 LIDWNEMA 437


>sp|CARB_METLZ|CARBAMOYL phosphate synthase large chain|Methanocorpusculum labreanum (strain

Query: 1 TVLGWNEM 8
+V GWNE+
Sbjct: 207 SVKGWNEI 214


>sp|SEPS_METMJ|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 VLGWNEMA 9
VLGW E+A
Sbjct: 291 VLGWVEVA 298


>sp|DHE3_PYRAB|GLUTAMATE dehydrogenase|Pyrococcus abyssi (strain GE5 /

Query: 2 VLGWNEMAG 10
VLGW+++ G
Sbjct: 205 VLGWDDLKG 213


>sp|HIS4_METLZ|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanocorpusculum labreanum

Query: 2 VLGWNEMAG 10
V GW E+AG
Sbjct: 137 VSGWQELAG 145


>sp|CARB_METPE|CARBAMOYL phosphate synthase large chain|Methanosphaerula palustris (strain

Query: 1 TVLGWNEM 8
+V+GW E+
Sbjct: 207 SVMGWKEL 214


>sp|CARB_METB6|CARBAMOYL phosphate synthase large chain|Methanoregula boonei (strain DSM

Query: 1 TVLGWNEM 8
+V+GW E+
Sbjct: 207 SVMGWKEL 214


>sp|SYM_THEON|METHIONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 1 TVLGWNE 7
TVLGW E
Sbjct: 216 TVLGWIE 222


>sp|CARB_METTH|CARBAMOYL phosphate synthase large chain|Methanothermobacter

Query: 1 TVLGWNE 7
+VLGW E
Sbjct: 207 SVLGWKE 213


>sp|CARB_METS3|CARBAMOYL phosphate synthase large chain|Methanobrevibacter smithii (strain

Query: 1 TVLGWNE 7
+VLGW E
Sbjct: 207 SVLGWKE 213


>sp|CARB1_METJA|CARBAMOYL phosphate synthase large chain,|Methanocaldococcus jannaschii

Query: 1 TVLGWNE 7
+VLGW E
Sbjct: 206 SVLGWKE 212


>sp|CARB_METBF|CARBAMOYL phosphate synthase large chain|Methanosarcina barkeri (strain

Query: 1 TVLGWNEM 8
+VLGW E+
Sbjct: 209 SVLGWAEI 216


>sp|CCA_THEKO|CCA-ADDING enzyme|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 VLGWN 6
VLGWN
Sbjct: 335 VLGWN 339


>sp|CARB_METMA|CARBAMOYL phosphate synthase large chain|Methanosarcina mazei (strain ATCC

Query: 1 TVLGWNEM 8
+VLGW E+
Sbjct: 209 SVLGWAEV 216


>sp|CARB_METAC|CARBAMOYL phosphate synthase large chain|Methanosarcina acetivorans (strain

Query: 1 TVLGWNEM 8
+VLGW E+
Sbjct: 209 SVLGWAEV 216


>sp|DHE3_PYREN|GLUTAMATE dehydrogenase|Pyrococcus endeavori

Query: 2 VLGWNEMAG 10
VLGW ++ G
Sbjct: 205 VLGWGDLKG 213


>sp|GLKA_PYRFU|ADP-DEPENDENT glucose/glucosamine kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 GWNEM 8
GWNE+
Sbjct: 104 GWNEL 108


>sp|CARB_ARCFU|CARBAMOYL phosphate synthase large chain|Archaeoglobus fulgidus (strain ATCC

Query: 2 VLGWNE 7
VLGW E
Sbjct: 210 VLGWKE 215


>sp|CARB_METTP|CARBAMOYL phosphate synthase large chain|Methanothrix thermoacetophila

Query: 1 TVLGWNEM 8
+V+GW E+
Sbjct: 209 SVIGWTEV 216


>sp|SYM_THEKO|METHIONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 TVLGW 5
TVLGW
Sbjct: 216 TVLGW 220


>sp|DHE3_PYRFU|GLUTAMATE dehydrogenase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 VLGWNEMAG 10
VLGW+ + G
Sbjct: 205 VLGWDTLKG 213


>sp|SYG_AERPE|GLYCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 4 GWNEMAG 10
GW E+AG
Sbjct: 325 GWIEVAG 331


>sp|HIS5_HALMA|IMIDAZOLE glycerol phosphate synthase subunit|Haloarcula marismortui (strain

Query: 3 LGWNEM 8
+GWNE+
Sbjct: 128 MGWNEL 133


>sp|HIS5_NATPD|IMIDAZOLE glycerol phosphate synthase subunit|Natronomonas pharaonis (strain

Query: 3 LGWNEM 8
+GWNE+
Sbjct: 128 MGWNEL 133




65|SequenceR|330|321|ATERYTVLGW

>sp|G1PDH_THESM|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Thermococcus sibiricus (strain DSM 12597

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 325 ERYTILG 331


>sp|G1PDH_SACS2|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Saccharolobus solfataricus (strain ATCC

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 325 ERYTILG 331


>sp|G1PDH_SACI7|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Saccharolobus islandicus (strain Y.G.57.14

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 325 ERYTILG 331


>sp|G1PDH_SACI6|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Saccharolobus islandicus (strain M.16.4 /

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 325 ERYTILG 331


>sp|G1PDH_SACI4|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Saccharolobus islandicus (strain M.14.25 /

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 325 ERYTILG 331


>sp|G1PDH_SACI3|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Saccharolobus islandicus (strain M.16.27)

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 325 ERYTILG 331


>sp|G1PDH_SACI2|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Saccharolobus islandicus (strain L.S.2.15 /

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 325 ERYTILG 331


>sp|G1PDH_SACI1|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Saccharolobus islandicus (strain Y.N.15.51

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 325 ERYTILG 331


>sp|G1PDH_PYRHO|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 321 ERYTILG 327


>sp|G1PDH_METTP|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanothrix thermoacetophila (strain DSM

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 330 ERYTILG 336


>sp|G1PDH_METTH|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanothermobacter thermautotrophicus

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 322 ERYTILG 328


>sp|G1PDH_METST|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanosphaera stadtmanae (strain ATCC

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 322 ERYTILG 328


>sp|G1PDH_METS5|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Metallosphaera sedula (strain ATCC 51363

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 325 ERYTILG 331


>sp|G1PDH_METS3|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanobrevibacter smithii (strain ATCC

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 322 ERYTILG 328


>sp|G1PDH_METBU|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanococcoides burtonii (strain DSM 6242

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 332 ERYTILG 338


>sp|G1PDH_METBF|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanosarcina barkeri (strain Fusaro /

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 331 ERYTILG 337


>sp|G1PDH_SULTO|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 324 ERYTILG 330


>sp|G1PDH_SULAC|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Sulfolobus acidocaldarius (strain ATCC

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 325 ERYTILG 331


>sp|G1PDH_THEAC|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 327 ERYTILG 333


>sp|G1PDH_THEVO|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Thermoplasma volcanium (strain ATCC 51530

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 327 ERYTILG 333


>sp|G1PDH_PYRAB|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrococcus abyssi (strain GE5 /

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 321 ERYTILG 327


>sp|G1PDH_METAR|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanocella arvoryzae (strain DSM 22066

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 319 ERYTILG 325


>sp|G1PDH_PYRFU|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrococcus furiosus (strain ATCC 43587

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 321 ERYTILG 327


>sp|G1PDH_KORCO|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Korarchaeum cryptofilum (strain OPF8)

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 288 ERYTILG 294


>sp|G1PDH_THEKO|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Thermococcus kodakarensis (strain ATCC

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 326 ERYTILG 332


>sp|G1PDH_IGNH4|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 326 ERYTILG 332


>sp|G1PDH_AERPE|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Aeropyrum pernix (strain ATCC 700893

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 327 ERYTILG 333


>sp|G1PDH_HYPBU|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Hyperthermus butylicus (strain DSM 5456

Query: 3 ERYTVLG 9
ERYT+LG
Sbjct: 323 ERYTILG 329


>sp|G1PDH_PYRCJ|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 314 DRYTILG 320


>sp|G1PDH_METKA|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanopyrus kandleri (strain AV19 /

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 327 DRYTILG 333


>sp|G1PDH_CALMQ|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Caldivirga maquilingensis (strain ATCC

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 327 DRYTILG 333


>sp|G1PDH_METAC|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanosarcina acetivorans (strain ATCC

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 331 DRYTILG 337


>sp|G1PDH_METMA|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 331 DRYTILG 337


>sp|G1PDH_PYRIL|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrobaculum islandicum (strain DSM 4184

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 318 DRYTILG 324


>sp|G1PDH_HALMA|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Haloarcula marismortui (strain ATCC 43049

Query: 3 ERYTVLG 9
+RYTVLG
Sbjct: 328 DRYTVLG 334


>sp|G1PDH_HALSA|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Halobacterium salinarum (strain ATCC 700922

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 328 DRYTILG 334


>sp|G1PDH_HALS3|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Halobacterium salinarum (strain ATCC 29341

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 328 DRYTILG 334


>sp|TRPE_SACS2|ANTHRANILATE synthase component 1|Saccharolobus solfataricus (strain ATCC

Query: 4 RYTVLGW 10
RY+V+ W
Sbjct: 40 RYSVIAW 46


>sp|G1PDH_PYRAE|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 318 DRYTILG 324


>sp|G1PDH_PYRNV|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 318 DRYTILG 324


>sp|COFG_METTP|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 4 RYTVLGW 10
RY LGW
Sbjct: 299 RYVKLGW 305


>sp|G1PDH_PYRAR|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 318 DRYTILG 324


>sp|G1PDH_NATPD|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Natronomonas pharaonis (strain ATCC 35678

Query: 3 ERYTVLG 9
+RYT+LG
Sbjct: 328 DRYTILG 334


>sp|G1PDH_PICTO|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Picrophilus torridus (strain ATCC 700027

Query: 4 RYTVLG 9
RYT+LG
Sbjct: 326 RYTILG 331


>sp|G1PDH_STAMF|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Staphylothermus marinus (strain ATCC 43588

Query: 4 RYTVLG 9
RYT+LG
Sbjct: 331 RYTILG 336


>sp|HELS_THEKO|ATP-DEPENDENT DNA helicase Hel308|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 TERYTVLGW 10
T+RY GW
Sbjct: 750 TKRYANFGW 758




66|SequenceR|335|326|PDILLATERY

>sp|UVRC_NATPD|UVRABC system protein C|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PDILLATERY 10
PD+LL +ERY
Sbjct: 308 PDVLLLSERY 317


>sp|WTPC_PYRFU|MOLYBDATE/TUNGSTATE import ATP-binding protein WtpC|Pyrococcus furiosus (strain ATCC

Query: 2 DILLATER 9
DIL++TER
Sbjct: 271 DILISTER 278


>sp|TRM1_METPE|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosphaerula palustris

Query: 1 PDILLATER 9
PD+ L+TER
Sbjct: 288 PDLSLSTER 296


>sp|MTSB_METBA|METHYLATED-THIOL--CORRINOID protein MtsB|Methanosarcina barkeri

Query: 1 PDILLATE 8
P+ILLA E
Sbjct: 119 PEILLANE 126


>sp|MTSB_METMA|METHYLATED-THIOL--CORRINOID protein MtsB|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PDILLATE 8
P+ILLA E
Sbjct: 119 PEILLANE 126


>sp|SYV_THEVO|VALINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 5 LATERY 10
LATERY
Sbjct: 82 LATERY 87


>sp|SYM_SACI4|METHIONINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 PDILLATE 8
PD++ ATE
Sbjct: 318 PDVIAATE 325


>sp|SYM_SACS2|METHIONINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PDILLATE 8
PD++ ATE
Sbjct: 318 PDVIAATE 325


>sp|RS15_HALWD|SMALL ribosomal subunit protein uS15|Haloquadratum walsbyi (strain DSM

Query: 1 PDILLATER 9
PD+ LAT++
Sbjct: 65 PDVKLATDK 73




67|SequenceR|340|331|SCSNKPDILL

>sp|Y1466_METJA|UNCHARACTERIZED protein MJ1466|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CSNKPDILL 10
CSNKP IL+
Sbjct: 133 CSNKPKILV 141


>sp|Y017_METJA|UNCHARACTERIZED protein MJ0017|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CSNKPDILL 10
CSNKP IL+
Sbjct: 133 CSNKPKILV 141


>sp|NADK_ARCFU|NAD kinase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SCSNKPDIL 9
SCS PD+L
Sbjct: 104 SCSAMPDVL 112


>sp|TOP6B_METAC|TYPE 2 DNA topoisomerase 6|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 SCSNKPDILL 10
+ +N+PDIL+
Sbjct: 153 TSTNEPDILM 162


>sp|KAE1B_METVS|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 SCSNKPDILL 10
S +NKP+I+L
Sbjct: 246 SHTNKPEIML 255


>sp|PAN_THEON|PROTEASOME-ACTIVATING nucleotidase|Thermococcus onnurineus (strain NA1)

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 283 AATNRPDIL 291


>sp|PAN_THEKO|PROTEASOME-ACTIVATING nucleotidase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 282 AATNRPDIL 290


>sp|PAN_THEGJ|PROTEASOME-ACTIVATING nucleotidase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 282 AATNRPDIL 290


>sp|PAN_PYRHO|PROTEASOME-ACTIVATING nucleotidase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 284 AATNRPDIL 292


>sp|PAN_PYRFU|PROTEASOME-ACTIVATING nucleotidase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 281 AATNRPDIL 289


>sp|PAN_PYRAB|PROTEASOME-ACTIVATING nucleotidase|Pyrococcus abyssi (strain GE5 /

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 281 AATNRPDIL 289


>sp|PAN_METTH|PROTEASOME-ACTIVATING nucleotidase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 295 AATNRPDIL 303


>sp|PAN_METAR|PROTEASOME-ACTIVATING nucleotidase|Methanocella arvoryzae (strain DSM 22066

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 303 AATNRPDIL 311


>sp|SAV_SULAC|PROTEIN SAV|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 629 AATNRPDIL 637


>sp|PAN_METVS|PROTEASOME-ACTIVATING nucleotidase|Methanococcus vannielii (strain ATCC 35089

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 292 AATNRPDIL 300


>sp|BIOA_METJA|ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE aminotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CSNKPDILL 10
C N P ILL
Sbjct: 88 CGNVPSILL 96


>sp|PAN_METJA|PROTEASOME-ACTIVATING nucleotidase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 SNKPDIL 9
+N+PDIL
Sbjct: 316 TNRPDIL 322


>sp|AROA_PYRFU|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 CSNKPDIL 9
CSN PD+
Sbjct: 290 CSNFPDLF 297


>sp|TOP6B_METMA|TYPE 2 DNA topoisomerase 6|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SCSNKPDILL 10
+ +N+PDIL+
Sbjct: 153 TSTNEPDILV 162


>sp|AROA_PYRAB|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 2 CSNKPDIL 9
CSN PD+
Sbjct: 292 CSNFPDLF 299


>sp|PAN_METMP|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain DSM 14266

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 292 AATNRPDIL 300


>sp|PAN_METM5|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain C5 /

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 292 AATNRPDIL 300


>sp|PAN_METM6|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain C6 /

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 292 AATNRPDIL 300


>sp|PAN_METM7|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain C7 /

Query: 1 SCSNKPDIL 9
+ +N+PDIL
Sbjct: 292 AATNRPDIL 300


>sp|TOP1_ARCFU|DNA topoisomerase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 CSNKPD 7
CSN PD
Sbjct: 604 CSNYPD 609


>sp|PAN_METMA|PROTEASOME-ACTIVATING nucleotidase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SCSNKPDIL 9
+ +N+PD+L
Sbjct: 303 AATNRPDVL 311


>sp|PAN_METAC|PROTEASOME-ACTIVATING nucleotidase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 SCSNKPDIL 9
+ +N+PD+L
Sbjct: 303 AATNRPDVL 311


>sp|PSTB_PYRFU|PHOSPHATE import ATP-binding protein PstB|Pyrococcus furiosus (strain ATCC

Query: 5 KPDILL 10
KPDILL
Sbjct: 167 KPDILL 172


>sp|DAPB_METB6|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanoregula boonei (strain DSM 21154

Query: 3 SNKPDILL 10
S KPD+L+
Sbjct: 57 SKKPDVLI 64


>sp|Y476_PYRFU|PROTEIN PF0476|Pyrococcus furiosus (strain ATCC 43587

Query: 1 SCSNKPDILL 10
S + KPD+L+
Sbjct: 56 SLNRKPDVLI 65


>sp|Y1542_METJA|UNCHARACTERIZED protein MJ1542|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CSNKPDILL 10
+NKPDI++
Sbjct: 455 ANNKPDIVV 463


>sp|ACDA_METBU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanococcoides

Query: 2 CSNKPD 7
CSN PD
Sbjct: 519 CSNYPD 524


>sp|Y1642_METJA|UNCHARACTERIZED protein MJ1642|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SCSNKPDI 8
SCS PD+
Sbjct: 81 SCSGLPDV 88




68|SequenceR|345|336|WQRSSSCSNK

>sp|RPO3_METST|DNA-DIRECTED RNA polymerase subunit Rpo3|Methanosphaera stadtmanae (strain ATCC

Query: 1 WQRSSSCSNK 10
WQ +++C K
Sbjct: 155 WQATTTCGYK 164




69|SequenceR|350|341|VVLAVWQRSS

>sp|RL18_HALMA|LARGE ribosomal subunit protein uL18|Haloarcula marismortui (strain ATCC

Query: 2 VLAVWQRS 9
VLA WQR+
Sbjct: 136 VLADWQRT 143


>sp|RL10E_AERPE|LARGE ribosomal subunit protein uL16|Aeropyrum pernix (strain ATCC 700893

Query: 1 VVLAVWQR 8
VVL VW R
Sbjct: 133 VVLEVWAR 140


>sp|Y614_PYRHO|UNCHARACTERIZED protein PH0614|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 VVLAVWQRSS 10
V+L +W+R S
Sbjct: 246 VILYLWRRRS 255


>sp|Y706_METJA|UNCHARACTERIZED protein MJ0706|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VVLAVWQRS 9
++LA+W+ +
Sbjct: 87 IILAIWKNN 95




70|SequenceR|355|346|ALEHGVVLAV

>sp|MBHJ_PYRFU|PROBABLE membrane-bound hydrogenase subunit mbhJ|Pyrococcus furiosus (strain

Query: 1 ALEHGVVLAV 10
A+ HGVVLA+
Sbjct: 138 AILHGVVLAL 147


>sp|KAE1B_METMJ|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 LEHGVVLAV 10
LEHGVVL +
Sbjct: 297 LEHGVVLPL 305


>sp|LMRAC_THELN|LEUCINE/METHIONINE racemase|Thermococcus litoralis (strain ATCC 51850

Query: 3 EHGVVLAV 10
EHG++LAV
Sbjct: 236 EHGILLAV 243


>sp|GUAAB_METJA|GMP synthase [glutamine-hydrolyzing] subunit B|Methanocaldococcus

Query: 1 ALEHGVVLAV 10
AL HG+VL V
Sbjct: 148 ALPHGMVLEV 157


>sp|AATA_THEPD|A-TYPE ATP synthase subunit A|Thermofilum pendens (strain DSM 2475

Query: 1 ALEHGVVLAV 10
A HGV LAV
Sbjct: 585 AQRHGVTLAV 594


>sp|COPA_ARCFU|PROBABLE copper-exporting P-type ATPase|Archaeoglobus fulgidus (strain ATCC

Query: 1 ALEHGVVL 8
ALEHG+ L
Sbjct: 472 ALEHGIEL 479


>sp|Y3226_SACS2|UNCHARACTERIZED aldolase SSO3226|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 ALEHGVVLA 9
AL+HG+V+
Sbjct: 21 ALDHGLVMG 29


>sp|GUAAB_METTH|GMP synthase [glutamine-hydrolyzing] subunit B|Methanothermobacter

Query: 1 ALEHGVVLAV 10
AL HG+VL +
Sbjct: 146 ALPHGLVLEI 155




71|SequenceR|360|351|GFWQHALEHG

>sp|GSA_METAR|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanocella arvoryzae (strain DSM 22066

Query: 2 FWQHALEHG 10
FW+H L++G
Sbjct: 381 FWKHMLQNG 389


>sp|Y3551_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 4 QHALEH 9
QHALEH
Sbjct: 121 QHALEH 126


>sp|AROD_METVS|3-DEHYDROQUINATE dehydratase|Methanococcus vannielii (strain ATCC 35089

Query: 2 FWQHALEHG 10
F +HA++HG
Sbjct: 74 FLKHAIKHG 82


>sp|PHR_METTH|DEOXYRIBODIPYRIMIDINE photo-lyase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 WQHALEHG 10
W HALE+
Sbjct: 34 WNHALEYA 41


>sp|PHR_METTM|DEOXYRIBODIPYRIMIDINE photo-lyase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 3 WQHALEHG 10
W HALE+
Sbjct: 34 WNHALEYA 41


>sp|COFH_METAR|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanocella arvoryzae (strain DSM

Query: 3 WQHALEH 9
W+H L+H
Sbjct: 213 WEHRLKH 219


>sp|AMPD_PYRHO|ANHYDROMEVALONATE phosphate decarboxylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 WQHALEHG 10
W+ ++EHG
Sbjct: 161 WKDSVEHG 168


>sp|TRPC_PYRAB|INDOLE-3-GLYCEROL phosphate synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 FWQHALEHG 10
F HA EHG
Sbjct: 117 FVDHAREHG 125


>sp|RGYR_PYRFU|REVERSE gyrase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GFWQHALE 8
GF+ H LE
Sbjct: 499 GFYNHVLE 506


>sp|ALF1_HALSA|FRUCTOSE-BISPHOSPHATE aldolase class 1|Halobacterium salinarum (strain ATCC 700922

Query: 3 WQHALEHG 10
+ H LEHG
Sbjct: 20 YDHGLEHG 27


>sp|ALF1_HALS3|FRUCTOSE-BISPHOSPHATE aldolase class 1|Halobacterium salinarum (strain ATCC 29341

Query: 3 WQHALEHG 10
+ H LEHG
Sbjct: 20 YDHGLEHG 27


>sp|FEN_METTH|FLAP endonuclease 1|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 WQHALEHG 10
W+ ALE G
Sbjct: 105 WKRALEEG 112


>sp|RS3_METBF|SMALL ribosomal subunit protein uS3|Methanosarcina barkeri (strain Fusaro

Query: 1 GFWQHALE 8
G WQH E
Sbjct: 287 GVWQHKHE 294


>sp|GLYA_HYPBU|SERINE hydroxymethyltransferase|Hyperthermus butylicus (strain DSM 5456

Query: 3 WQHALEHG 10
W++ L+HG
Sbjct: 219 WRNPLDHG 226


>sp|DMSC_HALSA|PUTATIVE dimethyl sulfoxide reductase membrane|Halobacterium salinarum

Query: 1 GFWQHALEHG 10
G W + L+HG
Sbjct: 36 GAWAYQLQHG 45


>sp|FEN_PYRFU|FLAP endonuclease 1|Pyrococcus furiosus (strain ATCC 43587

Query: 3 WQHALEHG 10
W+ ALE G
Sbjct: 105 WREALEKG 112


>sp|FEN_THEGJ|FLAP endonuclease 1|Thermococcus gammatolerans (strain DSM 15229

Query: 3 WQHALEHG 10
W ALE G
Sbjct: 105 WHEALERG 112


>sp|PURL_THEAC|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 GFWQHALE 8
G W+H L+
Sbjct: 749 GAWEHGLD 756


>sp|CBIL_METJA|PROBABLE cobalt-precorrin-2 C(20)-methyltransferase|Methanocaldococcus

Query: 2 FWQHALE 8
+W++ALE
Sbjct: 78 YWENALE 84


>sp|NNR_METKA|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Methanopyrus kandleri (strain

Query: 3 WQHALEHG 10
W H +HG
Sbjct: 231 WSHKGQHG 238


>sp|RS3_METMA|SMALL ribosomal subunit protein uS3|Methanosarcina mazei (strain ATCC

Query: 1 GFWQHALE 8
G WQH E
Sbjct: 283 GVWQHKHE 290


>sp|PGK_HALSA|PHOSPHOGLYCERATE kinase|Halobacterium salinarum (strain ATCC 700922

Query: 5 HALEHG 10
HAL HG
Sbjct: 212 HALSHG 217


>sp|PGK_HALS3|PHOSPHOGLYCERATE kinase|Halobacterium salinarum (strain ATCC 29341

Query: 5 HALEHG 10
HAL HG
Sbjct: 212 HALSHG 217


>sp|CBID_METM5|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanococcus maripaludis (strain C5 /

Query: 2 FWQHALE 8
FW H L+
Sbjct: 242 FWDHMLD 248


>sp|RAD50_PYRAB|DNA double-strand break repair Rad50|Pyrococcus abyssi (strain GE5 /

Query: 1 GFWQHALE 8
G W+HA E
Sbjct: 104 GKWRHASE 111


>sp|GSA_HALLT|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 FWQHALEHG 10
FWQ E G
Sbjct: 404 FWQEMKEQG 412




72|SequenceR|365|356|MTVLNGFWQH

>sp|RS3_METMA|SMALL ribosomal subunit protein uS3|Methanosarcina mazei (strain ATCC

Query: 4 LNGFWQH 10
+NG WQH
Sbjct: 281 VNGVWQH 287


>sp|RS3_METBU|SMALL ribosomal subunit protein uS3|Methanococcoides burtonii (strain DSM

Query: 4 LNGFWQH 10
+NG WQH
Sbjct: 280 VNGVWQH 286


>sp|RS3_METBF|SMALL ribosomal subunit protein uS3|Methanosarcina barkeri (strain Fusaro

Query: 4 LNGFWQH 10
+NG WQH
Sbjct: 285 VNGVWQH 291


>sp|RS3_METAC|SMALL ribosomal subunit protein uS3|Methanosarcina acetivorans (strain

Query: 4 LNGFWQH 10
+NG WQH
Sbjct: 292 VNGVWQH 298


>sp|RL15E_METTH|LARGE ribosomal subunit protein eL15|Methanothermobacter

Query: 1 MTVLNGFW 8
M VLN +W
Sbjct: 110 MEVLNSYW 117


>sp|RL15E_METLZ|LARGE ribosomal subunit protein eL15|Methanocorpusculum labreanum (strain

Query: 1 MTVLNGFW 8
M VLN +W
Sbjct: 113 MEVLNSYW 120


>sp|RL15E_METJA|LARGE ribosomal subunit protein eL15|Methanocaldococcus jannaschii

Query: 1 MTVLNGFW 8
M VLN +W
Sbjct: 111 MEVLNSYW 118


>sp|RL15E_METB6|LARGE ribosomal subunit protein eL15|Methanoregula boonei (strain DSM

Query: 1 MTVLNGFW 8
M VLN +W
Sbjct: 113 MEVLNSYW 120


>sp|SECG_METBF|PREPROTEIN translocase subunit SecG|Methanosarcina barkeri (strain Fusaro /

Query: 1 MTVLNGFW 8
++ +NGFW
Sbjct: 47 LSAVNGFW 54


>sp|RL15E_METM5|LARGE ribosomal subunit protein eL15|Methanococcus maripaludis (strain C5

Query: 1 MTVLNGFW 8
M VLN +W
Sbjct: 111 MEVLNSYW 118


>sp|RL15E_METBU|LARGE ribosomal subunit protein eL15|Methanococcoides burtonii (strain

Query: 1 MTVLNGFW 8
M VLN +W
Sbjct: 113 MEVLNSYW 120


>sp|RL15E_METHJ|LARGE ribosomal subunit protein eL15|Methanospirillum hungatei JF-1

Query: 1 MTVLNGFW 8
M VLN +W
Sbjct: 113 MEVLNSYW 120


>sp|RL15E_ARCFU|LARGE ribosomal subunit protein eL15|Archaeoglobus fulgidus (strain ATCC

Query: 1 MTVLNGFW 8
M VLN +W
Sbjct: 112 MEVLNSYW 119


>sp|SECG_METMA|PREPROTEIN translocase subunit SecG|Methanosarcina mazei (strain ATCC

Query: 1 MTVLNGFW 8
++ +NGFW
Sbjct: 47 LSAVNGFW 54


>sp|RL15E_METMP|LARGE ribosomal subunit protein eL15|Methanococcus maripaludis (strain

Query: 1 MTVLNGFW 8
M VLN +W
Sbjct: 111 MEVLNSYW 118


>sp|SECG_METAC|PREPROTEIN translocase subunit SecG|Methanosarcina acetivorans (strain ATCC

Query: 1 MTVLNGFW 8
++ +NGFW
Sbjct: 47 LSAVNGFW 54


>sp|RL15E_METAR|LARGE ribosomal subunit protein eL15|Methanocella arvoryzae (strain DSM

Query: 1 MTVLNGFW 8
M VLN +W
Sbjct: 113 MEVLNSYW 120


>sp|TMCA_SACI7|TRNA(MET) cytidine acetyltransferase TmcA|Saccharolobus islandicus (strain

Query: 1 MTVLNGFWQH 10
M +NG+++H
Sbjct: 23 MDAVNGYYRH 32


>sp|MALA_HALJT|ALPHA-AMYLASE MalA|Haloarcula japonica (strain ATCC 49778

Query: 3 VLNGFWQ 9
V NGFW+
Sbjct: 416 VPNGFWR 422


>sp|Y1514_METJA|PUTATIVE gamma-glutamylcyclotransferase MJ1514|Methanocaldococcus

Query: 6 GFWQH 10
GFW H
Sbjct: 13 GFWNH 17


>sp|RL37A_THEAC|LARGE ribosomal subunit protein eL43|Thermoplasma acidophilum (strain

Query: 3 VLNGFWQ 9
V NG WQ
Sbjct: 50 VANGIWQ 56


>sp|GLMU_METVS|BIFUNCTIONAL protein GlmU|Methanococcus vannielii (strain ATCC 35089

Query: 4 LNGFW 8
LNG+W
Sbjct: 207 LNGYW 211


>sp|GLMU_METM7|BIFUNCTIONAL protein GlmU|Methanococcus maripaludis (strain C7 /

Query: 4 LNGFW 8
LNG+W
Sbjct: 203 LNGYW 207


>sp|GLMU_METM5|BIFUNCTIONAL protein GlmU|Methanococcus maripaludis (strain C5 /

Query: 4 LNGFW 8
LNG+W
Sbjct: 203 LNGYW 207


>sp|GLMU_METJA|BIFUNCTIONAL protein GlmU|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 LNGFW 8
LNG+W
Sbjct: 201 LNGYW 205


>sp|GLMU_META3|BIFUNCTIONAL protein GlmU|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 LNGFW 8
LNG+W
Sbjct: 203 LNGYW 207


>sp|Y2613_METAC|UNCHARACTERIZED serpin-like protein MA_2613/MA_2612|Methanosarcina acetivorans

Query: 4 LNGFWQH 10
NG W+H
Sbjct: 204 FNGKWEH 210




73|SequenceR|370|361|HTWWEMTVLN

>sp|AGLD_HALVD|GLYCOSYLTRANSFERASE AglD|Haloferax volcanii (strain ATCC 29605

Query: 2 TWWEMTV 8
TWW++TV
Sbjct: 246 TWWQLTV 252


>sp|IDH_CALNO|ISOCITRATE dehydrogenase [NADP]|Caldococcus noboribetus

Query: 3 WWEMT 7
WWE+T
Sbjct: 71 WWEVT 75


>sp|DP2L_METTH|DNA polymerase II large subunit|Methanothermobacter thermautotrophicus

Query: 3 WWEMTVLN 10
WW T+L+
Sbjct: 424 WWIQTILS 431


>sp|HMEC_ARCFU|HDR-LIKE menaquinol oxidoreductase cytochrome b-like|Archaeoglobus

Query: 1 HTWWE 5
+TWWE
Sbjct: 63 YTWWE 67


>sp|SRP19_METAC|SIGNAL recognition particle 19 kDa|Methanosarcina acetivorans (strain

Query: 2 TWWEMT 7
+WWE++
Sbjct: 62 SWWEVS 67


>sp|SRP19_METBU|SIGNAL recognition particle 19 kDa|Methanococcoides burtonii (strain DSM

Query: 2 TWWE 5
TWWE
Sbjct: 62 TWWE 65


>sp|SRP19_METBF|SIGNAL recognition particle 19 kDa|Methanosarcina barkeri (strain Fusaro

Query: 2 TWWEMT 7
+WWE++
Sbjct: 62 SWWEVS 67


>sp|SRP19_METMA|SIGNAL recognition particle 19 kDa|Methanosarcina mazei (strain ATCC

Query: 2 TWWEMT 7
+WWE++
Sbjct: 62 SWWEVS 67


>sp|HPCAS_SULTO|3-HYDROXYPROPIONYL-COENZYME A synthetase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 HTWWE 5
H WW+
Sbjct: 413 HQWWQ 417


>sp|HPCAS_METS5|3-HYDROXYPROPIONYL-COENZYME A synthetase|Metallosphaera sedula (strain ATCC 51363

Query: 1 HTWWE 5
H WW+
Sbjct: 415 HQWWQ 419




74|SequenceR|375|366|ENLWLHTWWE

>sp|CDC6_METB6|ORC1-TYPE DNA replication protein|Methanoregula boonei (strain DSM 21154

Query: 1 ENLWLHTWW 9
E WL TW+
Sbjct: 421 ETKWLKTWF 429


>sp|CAS4_AERPE|CRISPR-ASSOCIATED exonuclease Cas4|Aeropyrum pernix (strain ATCC 700893

Query: 2 NLWLHT 7
N WLHT
Sbjct: 99 NRWLHT 104


>sp|RL30E_METB6|LARGE ribosomal subunit protein eL30|Methanoregula boonei (strain DSM

Query: 1 ENLWLHTW 8
ENL++HT+
Sbjct: 53 ENLFIHTF 60


>sp|DP2L_METST|DNA polymerase II large subunit|Methanosphaera stadtmanae (strain ATCC

Query: 4 WLHTWW 9
W WW
Sbjct: 428 WCEEWW 433


>sp|Y1196_METJA|PUTATIVE amino-acid transporter MJ1196|Methanocaldococcus jannaschii (strain

Query: 3 LWLHTWWE 10
LW T WE
Sbjct: 180 LWTATGWE 187


>sp|CBIM_METJA|PUTATIVE cobalt transport protein CbiM|Methanocaldococcus jannaschii

Query: 3 LWLHTWW 9
+W WW
Sbjct: 11 MWCAVWW 17


>sp|SYC_METMP|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 NLWLHT 7
N WLHT
Sbjct: 251 NYWLHT 256


>sp|K6PF_THEZI|ADP-SPECIFIC phosphofructokinase|Thermococcus zilligii

Query: 5 LHTWWE 10
LHTW++
Sbjct: 85 LHTWFD 90


>sp|HEM1_METB6|GLUTAMYL-TRNA reductase|Methanoregula boonei (strain DSM 21154

Query: 5 LHTWWE 10
LHTW E
Sbjct: 343 LHTWAE 348


>sp|SERK_STAMF|ATP-DEPENDENT L-serine kinase|Staphylothermus marinus (strain ATCC 43588

Query: 1 ENLWLHTWW 9
EN+ L TW+
Sbjct: 100 ENVKLKTWY 108


>sp|Y215_METJA|UNCHARACTERIZED protein MJ0215|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ENLWLHTWWE 10
+ LWL W E
Sbjct: 48 DELWLRRWCE 57


>sp|SYC_METM6|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 2 NLWLHT 7
N WLHT
Sbjct: 251 NYWLHT 256


>sp|SYC_METM7|CYSTEINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 2 NLWLHT 7
N WLHT
Sbjct: 251 NYWLHT 256


>sp|Y3520_METJA|UNCHARACTERIZED protein MJECL20|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ENLWLHTWWE 10
+ LWL W E
Sbjct: 38 DELWLRRWCE 47


>sp|SYP_SACI7|PROLINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 ENLWLHTW 8
ENLWL ++
Sbjct: 120 ENLWLKSY 127


>sp|SYP_SACI2|PROLINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 ENLWLHTW 8
ENLWL ++
Sbjct: 120 ENLWLKSY 127


>sp|SYP_SACI1|PROLINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 ENLWLHTW 8
ENLWL ++
Sbjct: 120 ENLWLKSY 127


>sp|SYP_SACS2|PROLINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 ENLWLHTW 8
ENLWL ++
Sbjct: 120 ENLWLKSY 127


>sp|SYP_SACI6|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 ENLWLHTW 8
ENLWL ++
Sbjct: 120 ENLWLKSY 127


>sp|SYP_SACI4|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 ENLWLHTW 8
ENLWL ++
Sbjct: 120 ENLWLKSY 127


>sp|SYP_SACI3|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 ENLWLHTW 8
ENLWL ++
Sbjct: 120 ENLWLKSY 127




75|SequenceR|380|371|WSAFGENLWL

>sp|RFCS_METMA|REPLICATION factor C small subunit|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 FGENLW 9
FGE+LW
Sbjct: 71 FGEDLW 76


>sp|RFCS_METBF|REPLICATION factor C small subunit|Methanosarcina barkeri (strain Fusaro /

Query: 4 FGENLW 9
FGE+LW
Sbjct: 67 FGEDLW 72


>sp|RFCS_METAC|REPLICATION factor C small subunit|Methanosarcina acetivorans (strain ATCC

Query: 4 FGENLW 9
FGE+LW
Sbjct: 71 FGEDLW 76


>sp|Y1451_METJA|UNCHARACTERIZED protein MJ1451|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 FGENLW 9
FGE LW
Sbjct: 85 FGETLW 90


>sp|RTCA_AERPE|RNA 3'-terminal phosphate cyclase|Aeropyrum pernix (strain ATCC 700893

Query: 1 WSAFGENL 8
W+ FGE +
Sbjct: 251 WAVFGETV 258


>sp|SYA_PICTO|ALANINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 4 FGENLW 9
FGE++W
Sbjct: 599 FGEHVW 604


>sp|EF2_SACS2|ELONGATION factor 2|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 GENLWL 10
GE LWL
Sbjct: 323 GEELWL 328


>sp|EF2_SACI7|ELONGATION factor 2|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 5 GENLWL 10
GE LWL
Sbjct: 323 GEELWL 328


>sp|EF2_SACI6|ELONGATION factor 2|Saccharolobus islandicus (strain M.16.4 /

Query: 5 GENLWL 10
GE LWL
Sbjct: 323 GEELWL 328


>sp|EF2_SACI4|ELONGATION factor 2|Saccharolobus islandicus (strain M.14.25 /

Query: 5 GENLWL 10
GE LWL
Sbjct: 323 GEELWL 328


>sp|EF2_SACI3|ELONGATION factor 2|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 5 GENLWL 10
GE LWL
Sbjct: 323 GEELWL 328


>sp|EF2_SACI2|ELONGATION factor 2|Saccharolobus islandicus (strain L.S.2.15 /

Query: 5 GENLWL 10
GE LWL
Sbjct: 323 GEELWL 328


>sp|EF2_SACI1|ELONGATION factor 2|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 5 GENLWL 10
GE LWL
Sbjct: 323 GEELWL 328


>sp|AROK_PYRAB|SHIKIMATE kinase|Pyrococcus abyssi (strain GE5 /

Query: 1 WSAFGE 6
WS+FG+
Sbjct: 262 WSSFGD 267


>sp|Y3523_METJA|UNCHARACTERIZED protein MJECL23|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 GENLW 9
GENLW
Sbjct: 737 GENLW 741


>sp|SYM_METB6|METHIONINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 WSAFGENL 8
W FGE +
Sbjct: 369 WKVFGERI 376


>sp|Y1421_ARCFU|UPF0182 protein AF_1421|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 WSAFGENL 8
W FGE L
Sbjct: 861 WETFGEML 868


>sp|Y2170_ARCFU|KELCH domain-containing protein AF_2170|Archaeoglobus fulgidus (strain

Query: 1 WSAFGENLWL 10
W AF + +W+
Sbjct: 211 WIAFTDRVWV 220




76|SequenceR|385|376|CLYEIWSAFG

>sp|PYRB_PYRAR|ASPARTATE carbamoyltransferase catalytic subunit|Pyrobaculum arsenaticum

Query: 2 LYEIWSAFG 10
LY IW FG
Sbjct: 140 LYTIWREFG 148


>sp|PYRB_PYRIL|ASPARTATE carbamoyltransferase catalytic subunit|Pyrobaculum islandicum

Query: 2 LYEIWSAFG 10
+Y IW FG
Sbjct: 140 VYTIWREFG 148


>sp|PYRB_PYRCJ|ASPARTATE carbamoyltransferase catalytic subunit|Pyrobaculum calidifontis

Query: 2 LYEIWSAFG 10
+Y IW FG
Sbjct: 140 VYTIWREFG 148


>sp|PYRB_PYRAE|ASPARTATE carbamoyltransferase catalytic subunit|Pyrobaculum aerophilum

Query: 2 LYEIWSAFG 10
+Y IW FG
Sbjct: 140 VYTIWREFG 148


>sp|AROK_PYRAB|SHIKIMATE kinase|Pyrococcus abyssi (strain GE5 /

Query: 2 LYEIWSAFG 10
+ E WS+FG
Sbjct: 258 IIEAWSSFG 266


>sp|DAPAL_PYRFU|UNCHARACTERIZED DapA-like lyase PF0657|Pyrococcus furiosus (strain ATCC 43587

Query: 4 EIWSAF 9
EIW+AF
Sbjct: 216 EIWNAF 221


>sp|AROE_METVS|SHIKIMATE dehydrogenase (NADP(+))|Methanococcus vannielii (strain ATCC 35089

Query: 3 YEIWSAF 9
+EIW+ F
Sbjct: 261 FEIWTGF 267


>sp|SYL_META3|LEUCINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 EIWSAFG 10
EIW FG
Sbjct: 805 EIWEMFG 811


>sp|RNZ_THEKO|RIBONUCLEASE Z|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 YEIWS 7
YEIWS
Sbjct: 128 YEIWS 132


>sp|RNZ_THEGJ|RIBONUCLEASE Z|Thermococcus gammatolerans (strain DSM 15229

Query: 3 YEIWS 7
YEIWS
Sbjct: 128 YEIWS 132


>sp|RNZ_THEON|RIBONUCLEASE Z|Thermococcus onnurineus (strain NA1)

Query: 3 YEIWS 7
YEIWS
Sbjct: 128 YEIWS 132


>sp|CAS1B_METRM|CRISPR-ASSOCIATED protein Cas1 2|Methanobrevibacter ruminantium (strain ATCC 35063

Query: 3 YEIWSAFG 10
+E WSAF
Sbjct: 168 HEYWSAFA 175


>sp|RNZ_THESM|RIBONUCLEASE Z|Thermococcus sibiricus (strain DSM 12597

Query: 3 YEIWS 7
YEIWS
Sbjct: 128 YEIWS 132


>sp|GUAAB_HALSA|GMP synthase [glutamine-hydrolyzing] subunit B|Halobacterium salinarum

Query: 3 YEIWSAFG 10
YE W AF
Sbjct: 223 YEPWQAFA 230


>sp|GUAAB_HALS3|GMP synthase [glutamine-hydrolyzing] subunit B|Halobacterium salinarum

Query: 3 YEIWSAFG 10
YE W AF
Sbjct: 223 YEPWQAFA 230


>sp|DAPAL_PYRHO|UNCHARACTERIZED DapA-like lyase PH0847|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 EIWSAF 9
E+W+AF
Sbjct: 215 EVWNAF 220


>sp|SYT_HYPBU|THREONINE--TRNA ligase|Hyperthermus butylicus (strain DSM 5456

Query: 2 LYEIWS 7
LYE+W+
Sbjct: 274 LYELWA 279


>sp|SUCC_NATPD|SUCCINATE--COA ligase [ADP-forming] subunit beta|Natronomonas pharaonis (strain

Query: 2 LYEIWS 7
LYE+W+
Sbjct: 176 LYELWA 181


>sp|AROK_THEGJ|SHIKIMATE kinase|Thermococcus gammatolerans (strain DSM 15229

Query: 2 LYEIWSAFG 10
L E WS FG
Sbjct: 257 LSEEWSRFG 265


>sp|MALK_THELN|TREHALOSE/MALTOSE import ATP-binding protein MalK|Thermococcus litoralis (strain

Query: 2 LYEIWSAFG 10
L ++W FG
Sbjct: 6 LVDVWKVFG 14


>sp|SRP54_THEVO|SIGNAL recognition particle 54 kDa|Thermoplasma volcanium (strain ATCC

Query: 2 LYEIWSAF 9
+Y++W F
Sbjct: 328 MYDVWEKF 335


>sp|SRP54_THEAC|SIGNAL recognition particle 54 kDa|Thermoplasma acidophilum (strain ATCC

Query: 2 LYEIWSAF 9
+Y++W F
Sbjct: 328 MYDVWEKF 335




77|SequenceR|390|381|FCHDVCLYEI

>sp|PYRG_NATPD|CTP synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 HDVCLYEI 10
HDVC+ E+
Sbjct: 145 HDVCIIEV 152


>sp|RADA_CENSY|DNA repair and recombination protein|Cenarchaeum symbiosum (strain A)

Query: 1 FCHDVCL 7
FCH +C+
Sbjct: 123 FCHTMCV 129


>sp|FLAJ_METVO|FLAGELLA accessory protein J|Methanococcus voltae

Query: 1 FCHDVCLYEI 10
F HD C Y I
Sbjct: 389 FGHDTCSYLI 398


>sp|KAE1_METS5|TRNA N6-adenosine threonylcarbamoyltransferase|Metallosphaera sedula

Query: 3 HDVCL 7
HDVCL
Sbjct: 223 HDVCL 227


>sp|Y51B_METJA|UNCHARACTERIZED polyferredoxin-like protein MJ0514.2|Methanocaldococcus jannaschii

Query: 1 FCHDVCLYEI 10
C DVC+ EI
Sbjct: 226 ICKDVCVGEI 235


>sp|NDK_METMA|NUCLEOSIDE diphosphate kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 DVCLYE 9
+VCLYE
Sbjct: 144 EVCLYE 149


>sp|NDK_METBF|NUCLEOSIDE diphosphate kinase|Methanosarcina barkeri (strain Fusaro /

Query: 4 DVCLYE 9
+VCLYE
Sbjct: 144 EVCLYE 149


>sp|NDK_METAC|NUCLEOSIDE diphosphate kinase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 DVCLYE 9
+VCLYE
Sbjct: 144 EVCLYE 149


>sp|Y635_METJA|UNCHARACTERIZED protein MJ0635|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 DVCLYEI 10
D C+YE+
Sbjct: 191 DACVYEV 197


>sp|COFG_METPE|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 FCHDVC 6
+C+D+C
Sbjct: 88 YCYDLC 93


>sp|SLAA_ACIAM|S-LAYER protein A|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 2 CHDVCLYEI 10
CH + YEI
Sbjct: 941 CHPIYTYEI 949


>sp|IDI2_SULTO|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 DVCLYE 9
++CLYE
Sbjct: 15 EICLYE 20


>sp|IDI2_METS5|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Metallosphaera sedula (strain ATCC 51363

Query: 4 DVCLYE 9
++CLYE
Sbjct: 12 EICLYE 17


>sp|Y1006_METJA|UNCHARACTERIZED ATP-binding protein MJ1006|Methanocaldococcus jannaschii (strain

Query: 1 FCHDVCL 7
CH +CL
Sbjct: 189 LCHVICL 195


>sp|Y1076_METJA|UNCHARACTERIZED ATP-binding protein MJ1076|Methanocaldococcus jannaschii (strain

Query: 1 FCHDVCL 7
CH +CL
Sbjct: 167 LCHVICL 173


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 FCHDVCL 7
F HD+C+
Sbjct: 447 FLHDLCV 453


>sp|Y3526_METJA|UNCHARACTERIZED ATP-binding protein MJECL26|Methanocaldococcus jannaschii (strain

Query: 1 FCHDVCL 7
CH +CL
Sbjct: 171 LCHVICL 177


>sp|Y625_METJA|UNCHARACTERIZED ATP-binding protein MJ0625|Methanocaldococcus jannaschii (strain

Query: 1 FCHDVCL 7
CH +CL
Sbjct: 167 LCHVICL 173


>sp|FDHB_METFO|F420-DEPENDENT formate dehydrogenase subunit beta|Methanobacterium formicicum

Query: 1 FCHDVCL 7
+C D CL
Sbjct: 310 YCEDCCL 316




78|SequenceR|395|386|IDYEPFCHDV

>sp|Y138_METJA|PUTATIVE glutamine amidotransferase-like protein MJ0138|Methanocaldococcus

Query: 1 IDYEPFCHD 9
IDYE FC +
Sbjct: 434 IDYESFCRN 442


>sp|NCPP_SULTO|PROBABLE inosine/xanthosine triphosphatase|Sulfurisphaera tokodaii (strain

Query: 1 IDYEPFCHD 9
+ +PFCH+
Sbjct: 38 VSSQPFCHE 46


>sp|SYK_HALSA|LYSINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 IDYEPFCHD 9
+DYEPF D
Sbjct: 264 VDYEPFGKD 272


>sp|RFCS_METJA|REPLICATION factor C small subunit|Methanocaldococcus jannaschii (strain ATCC

Query: 1 IDYEPFCHDV 10
IDY F +DV
Sbjct: 1034 IDYNDFVYDV 1043


>sp|T1SH_METJA|TYPE I restriction enzyme MjaIX|Methanocaldococcus jannaschii (strain

Query: 1 IDYEPF 6
ID+EPF
Sbjct: 213 IDFEPF 218


>sp|Y1307_METLZ|UPF0179 protein Mlab_1307|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 IDYEPFCHDV 10
I Y P C DV
Sbjct: 95 ITYTPVCDDV 104


>sp|SYK_HALMA|LYSINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 IDYEPFCHD 9
+D+EPF D
Sbjct: 263 VDFEPFGKD 271


>sp|MOAC_THEVO|PROBABLE cyclic pyranopterin monophosphate synthase|Thermoplasma volcanium

Query: 5 PFCHDV 10
P+CH++
Sbjct: 67 PYCHNI 72


>sp|MOAC_THEAC|PROBABLE cyclic pyranopterin monophosphate synthase|Thermoplasma

Query: 5 PFCHDV 10
P+CH++
Sbjct: 60 PYCHNI 65


>sp|Y1185_METJA|UNCHARACTERIZED protein MJ1185|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 IDYEPF 6
+DYEP+
Sbjct: 319 VDYEPY 324


>sp|Y534_METFV|UNCHARACTERIZED protein Mfer_0534|Methanothermus fervidus (strain ATCC 43054

Query: 4 EPFCHD 9
EPFC D
Sbjct: 631 EPFCVD 636


>sp|CBSA_SULAC|CYTOCHROME b558/566 subunit A|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 IDYEPFCHDV 10
+DY+PF ++
Sbjct: 368 LDYQPFMPNI 377


>sp|SYK_NATPD|LYSINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 IDYEPFCHD 9
+D+EPF D
Sbjct: 262 VDFEPFGKD 270


>sp|AGAL_SACS2|ALPHA-GALACTOSIDASE solfataricus (strain ATCC 35092

Query: 1 IDYEPFCHD 9
IDY PF D
Sbjct: 424 IDYVPFWKD 432


>sp|AATI_HALSA|A-TYPE ATP synthase subunit I|Halobacterium salinarum (strain ATCC 700922

Query: 2 DYEPFCHD 9
DY+P HD
Sbjct: 309 DYKPTGHD 316


>sp|HPRL1_HALWD|HGPRTASE-LIKE protein 1|Haloquadratum walsbyi (strain DSM 16790

Query: 2 DYEPFCHDV 10
DYE F H V
Sbjct: 18 DYEYFVHPV 26


>sp|HPRL1_HALWC|HGPRTASE-LIKE protein 1|Haloquadratum walsbyi (strain DSM 16854

Query: 2 DYEPFCHDV 10
DYE F H V
Sbjct: 18 DYEYFVHPV 26


>sp|GVPD_HALMT|PROTEIN GvpD|Haloferax mediterranei (strain ATCC 33500

Query: 1 IDYEPF 6
+DYEP+
Sbjct: 432 LDYEPY 437


>sp|SALAC_HALSA|SALACTIN salinarum (strain ATCC 700922

Query: 2 DYEPF 6
DYEPF
Sbjct: 242 DYEPF 246


>sp|RIBB_ARCFU|3,4-DIHYDROXY-2-BUTANONE 4-phosphate synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 PFCHDV 10
PF HDV
Sbjct: 70 PFMHDV 75


>sp|IF2P_PYRFU|PROBABLE translation initiation factor IF-2|Pyrococcus furiosus (strain ATCC

Query: 1 IDYEPFCHDV 10
I+YE + +DV
Sbjct: 381 IEYEGYVYDV 390


>sp|TRUB_METTH|PROBABLE tRNA pseudouridine synthase B|Methanothermobacter

Query: 6 FCHDV 10
+CHDV
Sbjct: 173 YCHDV 177


>sp|HPRT_METIK|HYPOXANTHINE/GUANINE phosphoribosyltransferase|Methanotorris igneus (strain DSM 5666

Query: 2 DYEPFCHDV 10
DYE F H +
Sbjct: 17 DYEYFIHPI 25




79|SequenceR|400|391|VFQTWIDYEP

>sp|CDC66_HALSA|ORC1-TYPE DNA replication protein 6|Halobacterium salinarum (strain ATCC

Query: 1 VFQTWIDYEP 10
VF+ DYEP
Sbjct: 105 VFEEIFDYEP 114


>sp|HMGCS_HALVD|HYDROXYMETHYLGLUTARYL-COA synthase|Haloferax volcanii (strain ATCC 29605

Query: 2 FQTWIDYE 9
F+TW DYE
Sbjct: 285 FETWDDYE 292


>sp|HDLA_ARCPA|HETERODISULFIDE reductase subunit A-like protein|Archaeoglobus profundus (strain

Query: 3 QTWIDYE 9
QTW+D++
Sbjct: 240 QTWVDWD 246


>sp|RS15_PYRAR|SMALL ribosomal subunit protein uS15|Pyrobaculum arsenaticum (strain

Query: 4 TWIDYEP 10
TWI Y P
Sbjct: 27 TWIQYTP 33


>sp|GLCV_SACS2|GLUCOSE import ATP-binding protein GlcV|Saccharolobus solfataricus

Query: 1 VFQTWIDY 8
VFQTW Y
Sbjct: 87 VFQTWALY 94


>sp|RS15_PYRIL|SMALL ribosomal subunit protein uS15|Pyrobaculum islandicum (strain DSM

Query: 4 TWIDYEP 10
TWI Y P
Sbjct: 24 TWIQYTP 30


>sp|RS15_PYRAE|SMALL ribosomal subunit protein uS15|Pyrobaculum aerophilum (strain

Query: 4 TWIDYEP 10
TWI Y P
Sbjct: 24 TWIQYTP 30


>sp|RS15_PYRCJ|SMALL ribosomal subunit protein uS15|Pyrobaculum calidifontis (strain

Query: 4 TWIDYEP 10
TWI Y P
Sbjct: 24 TWIQYTP 30


>sp|CAS6A_METJA|CRISPR-ASSOCIATED endoribonuclease Cas6 1|Methanocaldococcus jannaschii (strain ATCC

Query: 1 VFQTWIDYE 9
VF+ W DY+
Sbjct: 208 VFKVWGDYD 216


>sp|Y868_THEGJ|UPF0200 protein TGAM_0868|Thermococcus gammatolerans (strain DSM 15229

Query: 3 QTWIDYE 9
QTW D+E
Sbjct: 133 QTWEDFE 139


>sp|Y1334_THEKO|UPF0200 protein TK1334|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 QTWIDYE 9
QTW D+E
Sbjct: 133 QTWEDFE 139


>sp|LYSJ_THEKO|PUTATIVE [LysW]-aminoadipate semialdehyde/glutamate semialdehyde

Query: 5 WIDYE 9
W+DYE
Sbjct: 78 WVDYE 82


>sp|THIL_PYRCJ|THIAMINE-MONOPHOSPHATE kinase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 FQTWIDY 8
FQTW D+
Sbjct: 51 FQTWADF 57


>sp|PPSA_AERPE|PHOSPHOENOLPYRUVATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 1 VFQTWIDYEP 10
+ +WI Y P
Sbjct: 543 IISSWIGYHP 552


>sp|RS15_HYPBU|SMALL ribosomal subunit protein uS15|Hyperthermus butylicus (strain DSM

Query: 5 WIDYEP 10
WI Y+P
Sbjct: 24 WIQYDP 29


>sp|NURA_SULAC|DNA double-strand break repair nuclease|Sulfolobus acidocaldarius

Query: 3 QTWIDYEP 10
+ WI+Y P
Sbjct: 37 ELWINYSP 44


>sp|RS15_METKA|SMALL ribosomal subunit protein uS15|Methanopyrus kandleri (strain AV19

Query: 4 TWIDYEP 10
+W++Y P
Sbjct: 24 SWVEYSP 30


>sp|Y557_PICTO|PUTATIVE HTH-type transcriptional regulatory protein|Picrophilus torridus

Query: 2 FQTWIDY 8
F+T+IDY
Sbjct: 102 FKTFIDY 108


>sp|DTDA_METLZ|D-AMINOACYL-TRNA deacylase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 FQTWIDY 8
F TW+ Y
Sbjct: 271 FSTWVAY 277


>sp|LIPB2_PICTO|PROBABLE octanoyltransferase 2|Picrophilus torridus (strain ATCC 700027

Query: 1 VFQTWIDYEP 10
+F+T ++Y+P
Sbjct: 33 IFETPMEYKP 42


>sp|LYSY_IGNH4|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 2 FQTWIDYE 9
++TW YE
Sbjct: 117 YKTWYGYE 124


>sp|YORA_PYRWO|UNCHARACTERIZED 24.7 kDa protein in|Pyrococcus woesei

Query: 2 FQTWIDYEP 10
F +W+ Y P
Sbjct: 120 FFSWVTYSP 128


>sp|IDI_HALSA|ISOPENTENYL-DIPHOSPHATE Delta-isomerase|Halobacterium salinarum (strain ATCC 700922

Query: 5 WIDYE 9
W+DYE
Sbjct: 170 WVDYE 174


>sp|Y2292_ARCFU|UNCHARACTERIZED protein AF_2292|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VFQTWIDYE 9
V+ W DYE
Sbjct: 177 VYSPWEDYE 185


>sp|ARGDC_IGNH4|ARGININE decarboxylase proenzyme|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 QTWIDYE 9
TW DYE
Sbjct: 85 HTWPDYE 91




80|SequenceR|405|396|TYDASVFQTW

>sp|GATB_HALSA|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Halobacterium salinarum (strain ATCC

Query: 2 YDASVFQTW 10
YDA++ TW
Sbjct: 355 YDAALAATW 363


>sp|RADA_METTH|DNA repair and recombination protein|Methanothermobacter

Query: 1 TYDASVFQT 9
TY+A+VF T
Sbjct: 236 TYNAAVFVT 244


>sp|SYL1_METS5|LEUCINE--TRNA ligase 1|Metallosphaera sedula (strain ATCC 51363

Query: 1 TYDASVFQTW 10
TYD ++++W
Sbjct: 448 TYDNPLWKSW 457


>sp|DPHB_AERPE|DIPHTHINE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 2 YDASVFQT 9
YD SV++T
Sbjct: 273 YDRSVYET 280




81|SequenceR|410|401|LEQARTYDAS

>sp|SRP54_HALSA|SIGNAL recognition particle 54 kDa|Halobacterium salinarum (strain ATCC

Query: 2 EQARTYDAS 10
+QAR +DAS
Sbjct: 225 QQARQFDAS 233


>sp|SRP54_HALS3|SIGNAL recognition particle 54 kDa|Halobacterium salinarum (strain ATCC

Query: 2 EQARTYDAS 10
+QAR +DAS
Sbjct: 225 QQARQFDAS 233




82|SequenceR|415|406|NDLADLEQAR

>sp|SYT_THEPD|THREONINE--TRNA ligase|Thermofilum pendens (strain DSM 2475

Query: 1 NDLADLEQAR 10
+DLAD E+A+
Sbjct: 84 DDLADPEEAK 93


>sp|HCP_METJA|HYDROXYLAMINE reductase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 NDLADLEQ 8
+DL DLEQ
Sbjct: 235 HDLKDLEQ 242


>sp|Y1094_ARCFU|UNCHARACTERIZED protein AF_1094|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 LADLEQAR 10
L+DLEQ R
Sbjct: 48 LSDLEQGR 55


>sp|HCP_METVS|HYDROXYLAMINE reductase|Methanococcus vannielii (strain ATCC 35089

Query: 1 NDLADLEQ 8
+DL DLEQ
Sbjct: 239 HDLKDLEQ 246


>sp|FEN_KORCO|FLAP endonuclease 1|Korarchaeum cryptofilum (strain OPF8)

Query: 2 DLADLEQAR 10
++ DLE+AR
Sbjct: 111 EIGDLEEAR 119




83|SequenceR|420|411|EIPHSNDLAD

>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1

Query: 1 EIPHSNDLAD 10
EIP +NDLAD
Sbjct: 41 EIPIANDLAD 50


>sp|DP2L_METAR|DNA polymerase II large subunit|Methanocella arvoryzae (strain DSM

Query: 1 EIPHSNDLAD 10
EIP + DLAD
Sbjct: 42 EIPSATDLAD 51


>sp|GVPE_HALMT|TRANSCRIPTIONAL activator GvpE|Haloferax mediterranei (strain ATCC 33500

Query: 3 PHSNDLAD 10
PH NDLAD
Sbjct: 122 PHLNDLAD 129


>sp|METK_METVS|S-ADENOSYLMETHIONINE synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 EIPHSND 7
EIPH+ND
Sbjct: 157 EIPHAND 163


>sp|METK_METMI|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (Methanococcus deltae)

Query: 1 EIPHSND 7
EIPH+ND
Sbjct: 157 EIPHAND 163


>sp|METK_METMP|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 EIPHSND 7
EIPH+ND
Sbjct: 157 EIPHAND 163


>sp|METK_METM5|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain C5 /

Query: 1 EIPHSND 7
EIPH+ND
Sbjct: 157 EIPHAND 163


>sp|METK_METM6|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain C6 /

Query: 1 EIPHSND 7
EIPH+ND
Sbjct: 157 EIPHAND 163


>sp|METK_METM7|S-ADENOSYLMETHIONINE synthase|Methanococcus maripaludis (strain C7 /

Query: 1 EIPHSND 7
EIPH+ND
Sbjct: 157 EIPHAND 163


>sp|DP2L_METMJ|DNA polymerase II large subunit|Methanoculleus marisnigri (strain

Query: 1 EIPHSNDLAD 10
EIP ++DLAD
Sbjct: 40 EIPVASDLAD 49


>sp|DP2L_METMA|DNA polymerase II large subunit|Methanosarcina mazei (strain ATCC

Query: 1 EIPHSNDLAD 10
EIP + DLAD
Sbjct: 43 EIPLAKDLAD 52


>sp|DP2L_METBF|DNA polymerase II large subunit|Methanosarcina barkeri (strain Fusaro

Query: 1 EIPHSNDLAD 10
EIP + DLAD
Sbjct: 43 EIPLAKDLAD 52


>sp|DP2L_METAC|DNA polymerase II large subunit|Methanosarcina acetivorans (strain

Query: 1 EIPHSNDLAD 10
EIP + DLAD
Sbjct: 43 EIPLAKDLAD 52


>sp|DP2L_METBU|DNA polymerase II large subunit|Methanococcoides burtonii (strain DSM

Query: 1 EIPHSNDLAD 10
EIP + DLAD
Sbjct: 43 EIPLAKDLAD 52


>sp|DP2L_PICTO|DNA polymerase II large subunit|Picrophilus torridus (strain ATCC

Query: 1 EIPHSNDLAD 10
EIP +ND+A+
Sbjct: 39 EIPIANDMAE 48


>sp|RL18_AERPE|LARGE ribosomal subunit protein uL18|Aeropyrum pernix (strain ATCC 700893

Query: 1 EIPHSNDL 8
EIPHS ++
Sbjct: 130 EIPHSEEI 137


>sp|DP2L_METM6|DNA polymerase II large subunit|Methanococcus maripaludis (strain C6

Query: 1 EIPHSNDLAD 10
EIP + D+AD
Sbjct: 43 EIPLAKDMAD 52


>sp|DP2L_METMP|DNA polymerase II large subunit|Methanococcus maripaludis (strain DSM

Query: 1 EIPHSNDLAD 10
EIP + D+AD
Sbjct: 43 EIPLAKDMAD 52


>sp|DP2L_METM5|DNA polymerase II large subunit|Methanococcus maripaludis (strain C5

Query: 1 EIPHSNDLAD 10
EIP + D+AD
Sbjct: 43 EIPLAKDMAD 52


>sp|DP2L_METM7|DNA polymerase II large subunit|Methanococcus maripaludis (strain C7

Query: 1 EIPHSNDLAD 10
EIP + D+AD
Sbjct: 43 EIPLAKDMAD 52


>sp|RL18_HYPBU|LARGE ribosomal subunit protein uL18|Hyperthermus butylicus (strain DSM

Query: 1 EIPHSNDL 8
EIPHS ++
Sbjct: 130 EIPHSEEV 137


>sp|DP2L_METVS|DNA polymerase II large subunit|Methanococcus vannielii (strain ATCC

Query: 1 EIPHSNDLAD 10
EIP + D+AD
Sbjct: 43 EIPLAKDMAD 52


>sp|RL18_ARCFU|LARGE ribosomal subunit protein uL18|Archaeoglobus fulgidus (strain ATCC

Query: 1 EIPHSNDL 8
E+PHS+++
Sbjct: 131 EVPHSDEV 138


>sp|DCDA_METJA|DIAMINOPIMELATE decarboxylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EIPHSNDLAD 10
+IP DLAD
Sbjct: 264 QIPTQKDLAD 273


>sp|Y1488_METJA|UNCHARACTERIZED protein MJ1488|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IPHSND 7
IPH ND
Sbjct: 56 IPHGND 61


>sp|DPOL1_SULOH|DNA polymerase 1|Sulfurisphaera ohwakuensis

Query: 1 EIPHSN 6
EIPH+N
Sbjct: 25 EIPHAN 30


>sp|CDC67_HALSA|ORC1-TYPE DNA replication protein 7|Halobacterium salinarum (strain ATCC

Query: 1 EIPHSND 7
E+PH ND
Sbjct: 59 ELPHRND 65


>sp|DP2L_METJA|DNA polymerase II large subunit|Methanocaldococcus jannaschii (strain

Query: 1 EIPHSNDLAD 10
EIP + D+AD
Sbjct: 46 EIPLAADMAD 55


>sp|SPSS_METAC|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 PHSNDL 8
PHS+DL
Sbjct: 310 PHSHDL 315


>sp|GVPE1_HALSA|TRANSCRIPTIONAL activator GvpE1|Halobacterium salinarum (strain ATCC 700922

Query: 3 PHSNDLA 9
PH NDLA
Sbjct: 122 PHLNDLA 128


>sp|DP2L_PYRHO|DNA polymerase II large subunit|Pyrococcus horikoshii (strain ATCC

Query: 1 EIPHSNDLA 9
EIP ++D+A
Sbjct: 40 EIPQASDMA 48


>sp|DP2L_HALWD|DNA polymerase II large subunit|Haloquadratum walsbyi (strain DSM

Query: 1 EIPHSNDLAD 10
EIP + D+AD
Sbjct: 38 EIPVARDMAD 47


>sp|SPSS_METMA|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 PHSNDL 8
PHS+DL
Sbjct: 310 PHSHDL 315


>sp|PYRG_PYRCJ|CTP synthase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 EIPHSNDL 8
E+PH N++
Sbjct: 82 ELPHRNNI 89


>sp|SPSS_METBF|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina barkeri (strain Fusaro /

Query: 3 PHSNDL 8
PHS+DL
Sbjct: 310 PHSHDL 315


>sp|DNAG_METBF|DNA primase DnaG|Methanosarcina barkeri (strain Fusaro /

Query: 2 IPHSNDLAD 10
+P S +LAD
Sbjct: 134 VPESQELAD 142


>sp|ENDA_ARCFU|TRNA-SPLICING endonuclease|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EIPHSNDLAD 10
++PHS L D
Sbjct: 254 DLPHSEYLVD 263


>sp|DP2L_METST|DNA polymerase II large subunit|Methanosphaera stadtmanae (strain

Query: 1 EIPHSNDLAD 10
EIP + DLA+
Sbjct: 33 EIPLAKDLAE 42


>sp|DP2L_METTH|DNA polymerase II large subunit|Methanothermobacter

Query: 1 EIPHSNDLAD 10
EIP + DLA+
Sbjct: 34 EIPLAKDLAE 43


>sp|TRKA1_METMZ|TRK system potassium uptake protein|Methanosarcina mazei

Query: 2 IPHSNDL 8
IPH +DL
Sbjct: 194 IPHGDDL 200


>sp|DP2L_HALMA|DNA polymerase II large subunit|Haloarcula marismortui (strain ATCC

Query: 1 EIPHSNDLAD 10
EIP + D+AD
Sbjct: 38 EIPTARDMAD 47


>sp|DNAG_METMA|DNA primase DnaG|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 IPHSNDLAD 10
+P S +LAD
Sbjct: 134 VPESQELAD 142


>sp|TRKA1_METMA|TRK system potassium uptake protein|Methanosarcina mazei (strain ATCC

Query: 2 IPHSNDL 8
IPH +DL
Sbjct: 194 IPHGDDL 200


>sp|DNAG_METAC|DNA primase DnaG|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 IPHSNDLAD 10
+P S +LAD
Sbjct: 134 VPESQELAD 142




84|SequenceR|425|416|HGVSVEIPHS

>sp|SYA_IGNH4|ALANINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 GVSVEIPHS 10
GV VE+PH+
Sbjct: 458 GVRVEVPHN 466


>sp|SYA_NATPD|ALANINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 HGVSVEIP 8
HG VEIP
Sbjct: 477 HGADVEIP 484


>sp|SYA_METS5|ALANINE--TRNA ligase|Metallosphaera sedula (strain ATCC 51363

Query: 2 GVSVEIPHS 10
G+ VE+PH+
Sbjct: 458 GLKVEVPHN 466


>sp|SYA_HYPBU|ALANINE--TRNA ligase|Hyperthermus butylicus (strain DSM 5456

Query: 2 GVSVEIPHS 10
GV+V++PH+
Sbjct: 459 GVNVDVPHN 467


>sp|SYA_SULAC|ALANINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 VSVEIPHS 10
++VEIPH+
Sbjct: 462 INVEIPHN 469


>sp|SYA_AERPE|ALANINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 GVSVEIPHS 10
G VE+PH+
Sbjct: 443 GAPVEVPHN 451


>sp|RL18_AERPE|LARGE ribosomal subunit protein uL18|Aeropyrum pernix (strain ATCC 700893

Query: 5 VEIPHS 10
VEIPHS
Sbjct: 129 VEIPHS 134


>sp|Y1421_ARCFU|UPF0182 protein AF_1421|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 HGVSVEIPH 9
HG ++IPH
Sbjct: 91 HGEPLKIPH 99


>sp|PSTB_HALWD|PHOSPHATE import ATP-binding protein PstB|Haloquadratum walsbyi (strain DSM

Query: 2 GVSVEIP 8
GVS+EIP
Sbjct: 65 GVSMEIP 71


>sp|DPCKG_METVS|GTP-DEPENDENT dephospho-CoA kinase|Methanococcus vannielii (strain ATCC 35089

Query: 3 VSVEIPH 9
V VEIPH
Sbjct: 61 VPVEIPH 67


>sp|K6PF_PYRFU|ADP-SPECIFIC phosphofructokinase|Pyrococcus furiosus (strain ATCC 43587

Query: 5 VEIPHS 10
+E+PHS
Sbjct: 180 IEVPHS 185


>sp|AROE_METTH|SHIKIMATE dehydrogenase (NADP(+))|Methanothermobacter thermautotrophicus

Query: 1 HGVSVEIPHS 10
GV+V IPH
Sbjct: 61 EGVNVTIPHK 70


>sp|RS15_PYRHO|SMALL ribosomal subunit protein uS15|Pyrococcus horikoshii (strain ATCC

Query: 1 HGVSVEIP 8
HG++ EIP
Sbjct: 85 HGLAPEIP 92


>sp|RS15_PYRAB|SMALL ribosomal subunit protein uS15|Pyrococcus abyssi (strain GE5 /

Query: 1 HGVSVEIP 8
HG++ EIP
Sbjct: 85 HGLAPEIP 92


>sp|DMSA_HALSA|PUTATIVE dimethyl sulfoxide reductase catalytic|Halobacterium salinarum

Query: 2 GVSVEIP 8
GVS+E+P
Sbjct: 670 GVSLEVP 676


>sp|RL1_KORCO|LARGE ribosomal subunit protein uL1|Korarchaeum cryptofilum (strain

Query: 5 VEIPHS 10
VE+PHS
Sbjct: 53 VELPHS 58


>sp|FOLD_PICTO|BIFUNCTIONAL protein FolD|Picrophilus torridus (strain ATCC 700027

Query: 1 HGVSVEIP 8
HG+ +E P
Sbjct: 88 HGIMIETP 95


>sp|RS15_PYRAR|SMALL ribosomal subunit protein uS15|Pyrobaculum arsenaticum (strain

Query: 1 HGVSVEIP 8
HG+ EIP
Sbjct: 81 HGIKYEIP 88


>sp|MER_METMA|5,10-METHYLENETETRAHYDROMETHANOPTERIN reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 HGVSVE 6
HG+SVE
Sbjct: 244 HGISVE 249


>sp|ASSY_METBF|ARGININOSUCCINATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 HGVSVEIPHS 10
HG+ VE+ S
Sbjct: 159 HGIPVEVTKS 168


>sp|ASSY_METBA|ARGININOSUCCINATE synthase|Methanosarcina barkeri

Query: 1 HGVSVEIPHS 10
HG+ VE+ S
Sbjct: 159 HGIPVEVTKS 168


>sp|RS15_PYRFU|SMALL ribosomal subunit protein uS15|Pyrococcus furiosus (strain ATCC

Query: 1 HGVSVEIP 8
HG++ EIP
Sbjct: 85 HGLAPEIP 92


>sp|AROA_METLZ|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanocorpusculum labreanum (strain ATCC

Query: 1 HGVSVE 6
HGVSVE
Sbjct: 205 HGVSVE 210


>sp|RS15_PYRIL|SMALL ribosomal subunit protein uS15|Pyrobaculum islandicum (strain DSM

Query: 1 HGVSVEIP 8
HG+ EIP
Sbjct: 78 HGIRQEIP 85


>sp|G1PDH_METM6|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanococcus maripaludis (strain C6 /

Query: 2 GVSVEIPHS 10
G+S+ I HS
Sbjct: 208 GISIAIAHS 216




85|SequenceR|430|421|DVESPHGVSV

>sp|PCKG_THEAC|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 DVESPHGVSV 10
+VE PHG V
Sbjct: 241 EVEDPHGRKV 250


>sp|RL6_PYRAE|LARGE ribosomal subunit protein uL6|Pyrobaculum aerophilum (strain ATCC

Query: 1 DVESPHGVSV 10
+VE P GVSV
Sbjct: 9 EVEIPKGVSV 18


>sp|CAS6L_PYRFU|PUTATIVE CRISPR-associated endoribonuclease-like protein Cas6|Pyrococcus

Query: 2 VESPHG 7
+ESPHG
Sbjct: 43 LESPHG 48


>sp|Y1243_METJA|UPF0251 protein MJ1243|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 PHGVSV 10
PHGVS+
Sbjct: 24 PHGVSL 29


>sp|PYCB_METTH|PYRUVATE carboxylase subunit B|Methanothermobacter thermautotrophicus

Query: 1 DVESPHG 7
D+++PHG
Sbjct: 538 DIQTPHG 544


>sp|GATE_METVS|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanococcus vannielii (strain ATCC

Query: 1 DVESPHGVS 9
D E PH VS
Sbjct: 86 DDEPPHNVS 94


>sp|GATE_SULAC|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Sulfolobus acidocaldarius (strain ATCC

Query: 1 DVESPHGVS 9
D E PHG++
Sbjct: 85 DEEPPHGLN 93


>sp|PCNA_METM7|DNA polymerase sliding clamp|Methanococcus maripaludis (strain C7 /

Query: 1 DVESPHGVSV 10
D+E P+ VS+
Sbjct: 125 DIEYPNSVSI 134


>sp|PCNA_METMP|DNA polymerase sliding clamp|Methanococcus maripaludis (strain DSM

Query: 1 DVESPHGVSV 10
D+E P+ VS+
Sbjct: 125 DIEYPNSVSI 134


>sp|PCNA_METM5|DNA polymerase sliding clamp|Methanococcus maripaludis (strain C5 /

Query: 1 DVESPHGVSV 10
D+E P+ VS+
Sbjct: 125 DIEYPNNVSI 134


>sp|RL6_METAC|LARGE ribosomal subunit protein uL6|Methanosarcina acetivorans (strain

Query: 2 VESPHGVSV 10
+E P GVSV
Sbjct: 9 IEIPEGVSV 17


>sp|R1PKD_THEKO|ADP-DEPENDENT ribose-1-phosphate kinase|Thermococcus kodakarensis (strain ATCC

Query: 2 VESPHGVSV 10
VE P GV+V
Sbjct: 88 VEEPSGVAV 96


>sp|COFD_METKA|2-PHOSPHO-L-LACTATE transferase|Methanopyrus kandleri (strain AV19 /

Query: 1 DVESPHGVSV 10
DVE P G+ V
Sbjct: 272 DVELPEGLEV 281


>sp|PCNA_METM6|DNA polymerase sliding clamp|Methanococcus maripaludis (strain C6 /

Query: 1 DVESPHGVSV 10
D+E P+ VS+
Sbjct: 125 DIEYPNNVSI 134


>sp|LYSY_HALMA|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 4 SPHGVSV 10
+PHGVS+
Sbjct: 73 TPHGVSM 79


>sp|ATGT_ARCFU|TRNA-GUANINE(15) transglycosylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 VESPHG 7
+E+PHG
Sbjct: 18 IETPHG 23


>sp|LYSY_HALWD|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 4 SPHGVSV 10
+PHGVS+
Sbjct: 74 TPHGVSM 80


>sp|LYSY_NATPD|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 4 SPHGVSV 10
+PHGVS+
Sbjct: 74 TPHGVSM 80


>sp|RL6_METMA|LARGE ribosomal subunit protein uL6|Methanosarcina mazei (strain ATCC

Query: 2 VESPHGVSV 10
+E P GVSV
Sbjct: 9 IEIPEGVSV 17


>sp|LYSY_PYRHO|PUTATIVE [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate

Query: 5 PHGVSV 10
PHGVS+
Sbjct: 72 PHGVSM 77




86|SequenceR|435|426|ADFIEDVESP

>sp|RL19E_SACS2|LARGE ribosomal subunit protein eL19|Saccharolobus solfataricus (strain

Query: 2 DFIEDVES 9
D+IEDV+S
Sbjct: 27 DYIEDVQS 34


>sp|PURA_METTH|ADENYLOSUCCINATE synthetase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 FIEDVES 9
FIED+ES
Sbjct: 308 FIEDIES 314


>sp|Y2201_ARCFU|UNCHARACTERIZED protein AF_2201|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 DFIEDVES 9
DFI D ES
Sbjct: 63 DFIRDAES 70


>sp|PURA_METST|ADENYLOSUCCINATE synthetase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 DFIEDVE 8
D+IED+E
Sbjct: 307 DYIEDIE 313


>sp|Y2141_ARCFU|UNCHARACTERIZED protein AF_2141|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 FIEDVE 8
FIEDVE
Sbjct: 122 FIEDVE 127


>sp|PUR1_METJA|AMIDOPHOSPHORIBOSYLTRANSFERASE jannaschii (strain ATCC 43067

Query: 1 ADFIEDVE 8
A+F++D+E
Sbjct: 207 AEFVKDIE 214


>sp|AMPPA_METBU|AMP phosphorylase|Methanococcoides burtonii (strain DSM 6242

Query: 2 DFIEDVESP 10
DF ED+ SP
Sbjct: 48 DFTEDMISP 56


>sp|DNLI2_THEPD|DNA ligase 2|Thermofilum pendens (strain DSM 2475

Query: 1 ADFIEDVES 9
ADF E +ES
Sbjct: 13 ADFYERIES 21




87|SequenceR|440|431|KSYSIADFIE

>sp|CFBE_METJA|COENZYME F(430) synthetase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 SYSIADFIE 10
SY+I DF+E
Sbjct: 321 SYAIKDFLE 329


>sp|MAP2_THEKO|METHIONINE aminopeptidase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 KSYSIADFIE 10
K Y IA+F+E
Sbjct: 30 KLYDIAEFVE 39


>sp|Y181_METJA|UNCHARACTERIZED protein MJ0181|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KSYSIADFIE 10
KSY + DFI+
Sbjct: 13 KSYELKDFIK 22


>sp|MAP2_THEON|METHIONINE aminopeptidase|Thermococcus onnurineus (strain NA1)

Query: 1 KSYSIADFIE 10
K Y IA+F+E
Sbjct: 30 KLYDIAEFVE 39


>sp|SYT_THEAC|THREONINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 KSYSIADFIE 10
K+YS+++FI+
Sbjct: 636 KTYSLSEFID 645


>sp|Y991_METJA|UNCHARACTERIZED protein MJ0991|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KSYSIADFIE 10
K Y IA+F+E
Sbjct: 54 KIYKIAEFVE 63


>sp|TOP6B_METAC|TYPE 2 DNA topoisomerase 6|Methanosarcina acetivorans (strain ATCC

Query: 1 KSYSIADFIE 10
KS S+A+F E
Sbjct: 14 KSISVAEFFE 23


>sp|TOP6B_METMA|TYPE 2 DNA topoisomerase 6|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 KSYSIADFIE 10
KS S+A+F E
Sbjct: 14 KSISVAEFFE 23


>sp|TOP6B_METBF|TYPE 2 DNA topoisomerase 6|Methanosarcina barkeri (strain Fusaro /

Query: 1 KSYSIADFIE 10
KS S+A+F E
Sbjct: 14 KSISVAEFFE 23


>sp|SYC_THEPD|CYSTEINE--TRNA ligase|Thermofilum pendens (strain DSM 2475

Query: 1 KSYSIADFI 9
K+Y +AD+I
Sbjct: 441 KNYELADYI 449


>sp|SPSS_METKA|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanopyrus kandleri (strain AV19 /

Query: 3 YSIADFIE 10
YS+ DF E
Sbjct: 44 YSVCDFCE 51


>sp|SYI_AERPE|ISOLEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 3 YSIADFIE 10
YS+ D++E
Sbjct: 995 YSVEDYVE 1002


>sp|CISY_THEAC|CITRATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 KSYSIADFI 9
K Y I DF+
Sbjct: 75 KGYKIPDFV 83


>sp|SPSS_METTP|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 YSIADFIE 10
YS+ DF E
Sbjct: 48 YSVCDFCE 55


>sp|THI4_PYRAB|THIAMINE thiazole synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 KSYSIADFIE 10
K Y +AD IE
Sbjct: 95 KGYYVADAIE 104




88|SequenceR|445|436|IVSAGKSYSI

>sp|Y544_THEVO|UNCHARACTERIZED solute-binding protein TV0544|Thermoplasma volcanium (strain ATCC

Query: 2 VSAGKSYSI 10
V AGK YS+
Sbjct: 85 VQAGKQYSV 93


>sp|LYSK_SACI7|[LYSW]-LYSINE/[LYSW]-ORNITHINE hydrolase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 IVSAGKSYSI 10
I+ AG+SY++
Sbjct: 208 IIRAGESYNV 217


>sp|LYSK_SACI4|[LYSW]-LYSINE/[LYSW]-ORNITHINE hydrolase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 IVSAGKSYSI 10
I+ AG+SY++
Sbjct: 208 IIRAGESYNV 217


>sp|LYSK_SACI3|[LYSW]-LYSINE/[LYSW]-ORNITHINE hydrolase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 IVSAGKSYSI 10
I+ AG+SY++
Sbjct: 208 IIRAGESYNV 217


>sp|LYSK_SACI2|[LYSW]-LYSINE/[LYSW]-ORNITHINE hydrolase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 IVSAGKSYSI 10
I+ AG+SY++
Sbjct: 208 IIRAGESYNV 217


>sp|LYSK_SACI1|[LYSW]-LYSINE/[LYSW]-ORNITHINE hydrolase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 IVSAGKSYSI 10
I+ AG+SY++
Sbjct: 208 IIRAGESYNV 217


>sp|LYSK_SACI6|[LYSW]-LYSINE/[LYSW]-ORNITHINE hydrolase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 IVSAGKSYSI 10
I+ AG+SY++
Sbjct: 208 IIRAGESYNV 217


>sp|LYSK_SACS2|[LYSW]-LYSINE/[LYSW]-ORNITHINE hydrolase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 IVSAGKSYSI 10
I+ AG+SY++
Sbjct: 208 IIRAGESYNV 217




89|SequenceR|450|441|DHLMRIVSAG

>sp|TRPA_ARCFU|TRYPTOPHAN synthase alpha chain|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 DHLMRIVSAG 10
DH+ +++SAG
Sbjct: 202 DHVRQLISAG 211


>sp|TRPA_HALVD|TRYPTOPHAN synthase alpha chain|Haloferax volcanii (strain ATCC 29605

Query: 1 DHLMRIVSAG 10
DH RIV++G
Sbjct: 212 DHAERIVASG 221


>sp|KTHY_HALSA|PROBABLE thymidylate kinase|Halobacterium salinarum (strain ATCC 700922

Query: 1 DHLMRIVS 8
DHL R+VS
Sbjct: 67 DHLSRVVS 74


>sp|KTHY_HALS3|PROBABLE thymidylate kinase|Halobacterium salinarum (strain ATCC 29341

Query: 1 DHLMRIVS 8
DHL R+VS
Sbjct: 67 DHLSRVVS 74


>sp|TRPA_HALMA|TRYPTOPHAN synthase alpha chain|Haloarcula marismortui (strain ATCC 43049

Query: 2 HLMRIVSAG 10
H RIVSAG
Sbjct: 230 HAERIVSAG 238


>sp|SYA_METS3|ALANINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 DHLMRIVS 8
DH+M I+S
Sbjct: 388 DHIMNIIS 395


>sp|SRP54_HALWD|SIGNAL recognition particle 54 kDa|Haloquadratum walsbyi (strain DSM

Query: 1 DHLMRIV 7
DH++RIV
Sbjct: 73 DHVLRIV 79


>sp|SRP54_HALSA|SIGNAL recognition particle 54 kDa|Halobacterium salinarum (strain ATCC

Query: 1 DHLMRIV 7
DH++RIV
Sbjct: 73 DHVLRIV 79


>sp|SRP54_HALS3|SIGNAL recognition particle 54 kDa|Halobacterium salinarum (strain ATCC

Query: 1 DHLMRIV 7
DH++RIV
Sbjct: 73 DHVLRIV 79




90|SequenceR|455|446|KDGIYDHLMR

>sp|DEOC_THEGJ|DEOXYRIBOSE-PHOSPHATE aldolase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 KDGIYDHLMR 10
KDG YD++ R
Sbjct: 103 KDGDYDYVKR 112


>sp|CHEB_NATPD|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Natronomonas pharaonis

Query: 2 DGIYDHLMR 10
DG+ D +MR
Sbjct: 346 DGVLDTIMR 354


>sp|Y1914_METTH|UPF0425 pyridoxal phosphate-dependent protein

Query: 1 KDGIYD 6
+DGIYD
Sbjct: 28 RDGIYD 33


>sp|PYLC_METMA|3-METHYL-D-ORNITHINE--L-LYSINE ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 IYDHLM 9
IY+HLM
Sbjct: 293 IYEHLM 298


>sp|PYLC_METBF|3-METHYL-D-ORNITHINE--L-LYSINE ligase|Methanosarcina barkeri (strain Fusaro /

Query: 4 IYDHLM 9
IY+HLM
Sbjct: 285 IYEHLM 290


>sp|PYLC_METAC|3-METHYL-D-ORNITHINE--L-LYSINE ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 IYDHLM 9
IY+HLM
Sbjct: 285 IYEHLM 290


>sp|Y1470_META3|UNCHARACTERIZED solute-binding protein Maeo_1470|Methanococcus aeolicus (strain

Query: 1 KDGIYDHL 8
K G+YD+L
Sbjct: 233 KTGVYDYL 240


>sp|KAE1B_METLZ|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 KDGIYDHL 8
KDG Y HL
Sbjct: 180 KDGSYIHL 187


>sp|HUTU_THEAC|PROBABLE urocanate hydratase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 IYDHLMR 10
+YD LMR
Sbjct: 244 VYDELMR 250


>sp|MDH_NITMS|MALATE dehydrogenase|Nitrosopumilus maritimus (strain SCM1)

Query: 2 DGIYDH 7
DG YDH
Sbjct: 251 DGEYDH 256


>sp|TRUA_METBU|TRNA pseudouridine synthase A|Methanococcoides burtonii (strain DSM 6242

Query: 1 KDGIYDHLMR 10
++ ++DHL+R
Sbjct: 245 RERVHDHLVR 254


>sp|MSMJS_METJA|SMALL-CONDUCTANCE mechanosensitive channel MscMJ|Methanocaldococcus jannaschii

Query: 2 DGIYDHLM 9
DGI++H +
Sbjct: 108 DGIFEHYL 115


>sp|MTM3_METJA|TYPE II methyltransferase M.MjaIII|Methanocaldococcus jannaschii (strain

Query: 1 KDGIYDHLM 9
KDGIY+ L+
Sbjct: 278 KDGIYELLI 286




91|SequenceR|460|451|GKKFDKDGIY

>sp|Y665_METJA|UNCHARACTERIZED protein MJ0665|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KKFDKDGI 9
KKF+K+GI
Sbjct: 24 KKFEKEGI 31


>sp|RFCS_METS3|REPLICATION factor C small subunit|Methanobrevibacter smithii (strain ATCC

Query: 1 GKKFDKDGIY 10
GK+ D+D +Y
Sbjct: 208 GKQVDEDAVY 217


>sp|SYI_METLZ|ISOLEUCINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 GKKFDKDG 8
GK+F +DG
Sbjct: 890 GKQFGRDG 897


>sp|Y3528_METJA|UNCHARACTERIZED protein MJECL28|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GKKFDKDGIY 10
GKK DK+ I+
Sbjct: 561 GKKLDKNTIH 570


>sp|RPO11_METKA|DNA-DIRECTED RNA polymerase subunit Rpo11|Methanopyrus kandleri (strain AV19 /

Query: 2 KKFDKDGI 9
KK+DKD +
Sbjct: 11 KKYDKDEV 18


>sp|Y1463_METJA|UPF0128 protein MJ1463|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GKKFDKDG 8
G KF KDG
Sbjct: 62 GDKFSKDG 69


>sp|RLME_META3|RIBOSOMAL RNA large subunit methyltransferase|Methanococcus aeolicus (strain

Query: 1 GKKFDKD 7
GKKFDK+
Sbjct: 205 GKKFDKN 211


>sp|GATD_SULAC|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Sulfolobus acidocaldarius (strain ATCC

Query: 2 KKFDKDGIY 10
KK KDG++
Sbjct: 350 KKASKDGVF 358


>sp|Y1357_DESA1|MEMO1 family protein DKAM_1357|Desulfurococcus amylolyticus (strain DSM

Query: 3 KFDKDGIY 10
K D DG+Y
Sbjct: 218 KLDTDGLY 225


>sp|PPSA_METJA|PROBABLE phosphoenolpyruvate synthase|Methanocaldococcus jannaschii (strain

Query: 3 KFDKDGI 9
K DKDGI
Sbjct: 757 KIDKDGI 763


>sp|SCAF_PYRFU|DUF35 domain-containing scaffold protein|Pyrococcus furiosus (strain ATCC

Query: 2 KKFDKDGI 9
++FD+DG+
Sbjct: 115 REFDEDGL 122


>sp|CSG_METBF|MAJOR S-layer protein|Methanosarcina barkeri (strain Fusaro /

Query: 3 KFDKDGIY 10
+FDKDG Y
Sbjct: 447 EFDKDGEY 454




92|SequenceR|465|456|LYMNMGKKFD

>sp|FUMC_SACS2|FUMARATE hydratase class II|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LYMNMGKKF 9
L+MN G KF
Sbjct: 10 LFMNTGTKF 18


>sp|SYR_PYRFU|ARGININE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 YMNMGKKFD 10
Y+N+ +KFD
Sbjct: 179 YLNLKRKFD 187


>sp|Y163_ARCFU|UNCHARACTERIZED protein AF_0163|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LYMNMGK 7
YMN+GK
Sbjct: 97 FYMNIGK 103


>sp|FDHB2_METMP|F420-DEPENDENT formate dehydrogenase 2 subunit|Methanococcus maripaludis (strain

Query: 3 MNMGKKF 9
+N+GKKF
Sbjct: 252 INLGKKF 258


>sp|METK_SACI7|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 LYMNMGKKFD 10
+Y+N G K D
Sbjct: 256 IYVNTGDKID 265


>sp|METK_SACI6|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 LYMNMGKKFD 10
+Y+N G K D
Sbjct: 256 IYVNTGDKID 265


>sp|METK_SACI4|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 LYMNMGKKFD 10
+Y+N G K D
Sbjct: 256 IYVNTGDKID 265


>sp|METK_SACI3|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 LYMNMGKKFD 10
+Y+N G K D
Sbjct: 256 IYVNTGDKID 265


>sp|METK_SACI2|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 LYMNMGKKFD 10
+Y+N G K D
Sbjct: 256 IYVNTGDKID 265


>sp|ACDA_METJA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanocaldococcus

Query: 1 LYMNMGKKF 9
LY++ G+KF
Sbjct: 655 LYLSNGEKF 663


>sp|METK_SACI1|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 LYMNMGKKFD 10
+Y+N G K D
Sbjct: 256 IYVNTGDKID 265


>sp|METK_SACS2|S-ADENOSYLMETHIONINE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LYMNMGKKFD 10
+Y+N G K D
Sbjct: 256 VYVNTGDKID 265


>sp|GGR_METAC|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 MNMGKKFD 10
MN+GK+++
Sbjct: 139 MNLGKEYE 146


>sp|BRIX_PYRAB|PROBABLE Brix domain-containing ribosomal biogenesis|Pyrococcus abyssi

Query: 1 LYMNMGKK 8
LYM GKK
Sbjct: 29 LYMTRGKK 36


>sp|GLCAE_SACS2|D-GLUCOSAMINE-6-PHOSPHATE 4-epimerase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LYMNMGKKFD 10
+Y+N K FD
Sbjct: 4 IYLNWDKMFD 13




93|SequenceR|470|461|QQFKTLYMNM

>sp|QUEC_SACS2|7-CYANO-7-DEAZAGUANINE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 QQFKTLYM 8
Q FK LYM
Sbjct: 178 QNFKPLYM 185


>sp|MTRA2_METRM|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit A 2|Methanobrevibacter ruminantium

Query: 1 QQFKTLYMN 9
Q FK LY N
Sbjct: 88 QSFKALYEN 96




94|SequenceR|475|466|TAANKQQFKT

***** No hits found ******


95|SequenceR|480|471|EWLDETAANK

>sp|SYA_PYRAE|ALANINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 WLDETA 7
W+DETA
Sbjct: 157 WIDETA 162


>sp|Y352_METJA|UNCHARACTERIZED protein MJ0352|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WLDETAA 8
W+DE+AA
Sbjct: 38 WIDESAA 44


>sp|ILVC_HALMA|KETOL-ACID reductoisomerase (NADP(+))|Haloarcula marismortui (strain ATCC

Query: 1 EWLDETAANK 10
EW++E AN+
Sbjct: 291 EWINENQANR 300


>sp|ILVC_HALWD|KETOL-ACID reductoisomerase (NADP(+))|Haloquadratum walsbyi (strain DSM 16790

Query: 1 EWLDETAANK 10
EW+ E AN+
Sbjct: 313 EWISENQANR 322


>sp|PHR_METTH|DEOXYRIBODIPYRIMIDINE photo-lyase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 EWLDETAA 8
EW+DE A
Sbjct: 124 EWVDEAAG 131




96|SequenceR|485|476|ANELSEWLDE

>sp|ASST_METAC|L-ASPARTATE semialdehyde sulfurtransferase|Methanosarcina acetivorans (strain

Query: 1 ANELSEWL 8
ANEL EW+
Sbjct: 341 ANELKEWV 348


>sp|Y642_METJA|UNCHARACTERIZED protein MJ0642|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 NELSEWLDE 10
N LS+WLD+
Sbjct: 125 NPLSKWLDK 133


>sp|Y1976_SACS2|UPF0145 protein SSO1976|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 ANELSEWLDE 10
+NELSE +DE
Sbjct: 91 SNELSEAMDE 100


>sp|PUR2_PYRFU|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 ELSEWLDE 10
E+ EW+DE
Sbjct: 131 EMKEWIDE 138


>sp|RFCL_THEKO|REPLICATION factor C large subunit|Thermococcus kodakarensis (strain ATCC

Query: 2 NELSEWLDE 10
NEL +W+DE
Sbjct: 253 NELLQWIDE 261


>sp|GYRB_ARCFU|DNA gyrase subunit B|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 NELSEWLD 9
N LSEWL+
Sbjct: 127 NALSEWLE 134


>sp|Y426_ARCFU|UNCHARACTERIZED protein AF_0426|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 ELSEWLDE 10
++ EWLDE
Sbjct: 228 KIQEWLDE 235


>sp|Y666_METJA|PUTATIVE molybdopterin biosynthesis protein MJ0666|Methanocaldococcus

Query: 3 ELSEWLDE 10
+LSE+LDE
Sbjct: 20 KLSEYLDE 27


>sp|LYSJ_THEKO|PUTATIVE [LysW]-aminoadipate semialdehyde/glutamate semialdehyde

Query: 3 ELSEWLD 9
ELS W+D
Sbjct: 74 ELSHWVD 80


>sp|PUR2_PYRHO|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 ELSEWLDE 10
E+ +W+DE
Sbjct: 130 EMRKWIDE 137


>sp|Y1394_METJA|UNCHARACTERIZED protein MJ1394|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ANELSEW 7
AN++SEW
Sbjct: 349 ANKMSEW 355


>sp|SYK_PYRHO|LYSINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 NELSEWLD 9
NE++EWL+
Sbjct: 451 NEVAEWLE 458


>sp|IDI2_META3|ISOPENTENYL-DIPHOSPHATE delta-isomerase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 NELSEWL 8
NEL EW+
Sbjct: 350 NELKEWI 356


>sp|PDAD_PYRHO|PYRUVOYL-DEPENDENT arginine decarboxylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 6 EWLDE 10
EWLDE
Sbjct: 51 EWLDE 55


>sp|THIRX_METJA|THIOREDOXIN jannaschii (strain ATCC 43067

Query: 2 NELSEWL 8
NE++EW+
Sbjct: 45 NEIAEWV 51




97|SequenceR|490|481|IPKGSANELS

>sp|PINA_SACI5|HOLLIDAY junction branch migration ATPase|Saccharolobus islandicus (strain

Query: 3 KGSANELS 10
KG ANELS
Sbjct: 79 KGEANELS 86


>sp|Y632_METJA|UNCHARACTERIZED ATP-binding protein MJ0632|Methanocaldococcus jannaschii (strain

Query: 1 IPKGSANEL 9
IPK + NEL
Sbjct: 118 IPKNTLNEL 126


>sp|RL34_THESM|LARGE ribosomal subunit protein eL34|Thermococcus sibiricus (strain DSM

Query: 1 IPKGSANEL 9
IP+G NEL
Sbjct: 46 IPRGRPNEL 54


>sp|ACDA_METJA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanocaldococcus

Query: 2 PKGSANEL 9
PKG AN++
Sbjct: 708 PKGRANKI 715


>sp|SMC_THEAC|CHROMOSOME partition protein Smc|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 IPKGSANELS 10
+ KGS NE S
Sbjct: 67 VSKGSGNECS 76




98|SequenceR|495|486|NMVAAIPKGS

>sp|HELS_HALMA|ATP-DEPENDENT DNA helicase Hel308|Haloarcula marismortui (strain ATCC 43049

Query: 1 NMVAAIPKGS 10
N+VA+IP S
Sbjct: 42 NLVASIPTAS 51


>sp|OGT_METTH|METHYLATED-DNA--PROTEIN-CYSTEINE methyltransferase|Methanothermobacter thermautotrophicus (strain

Query: 1 NMVAAIPKGS 10
++V++IP+GS
Sbjct: 100 DVVSSIPRGS 109


>sp|NFI_NANEQ|BIFUNCTIONAL methyltransferase-like/endonuclease|Nanoarchaeum equitans (strain

Query: 1 NMVAAIPKG 9
N++ IPKG
Sbjct: 25 NLIEQIPKG 33


>sp|OFOA1_AERPE|2-OXOACID:FERREDOXIN oxidoreductase 1, subunit alpha|Aeropyrum pernix (strain ATCC

Query: 1 NMVAAIP 7
NMVA++P
Sbjct: 420 NMVASVP 426


>sp|HELS_HALSA|ATP-DEPENDENT DNA helicase Hel308|Halobacterium salinarum (strain ATCC 700922

Query: 1 NMVAAIPKGS 10
N+VA++P S
Sbjct: 42 NLVASVPTAS 51


>sp|HELS_HALS3|ATP-DEPENDENT DNA helicase Hel308|Halobacterium salinarum (strain ATCC 29341

Query: 1 NMVAAIPKGS 10
N+VA++P S
Sbjct: 42 NLVASVPTAS 51


>sp|HELS_AERPE|ATP-DEPENDENT DNA helicase Hel308|Aeropyrum pernix (strain ATCC 700893

Query: 1 NMVAAIPKGS 10
N+V A P GS
Sbjct: 45 NLVVAAPTGS 54




99|SequenceR|500|491|QKTWTNMVAA

>sp|COXX_HALWD|PROTOHEME IX farnesyltransferase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 TWTNMVAA 10
+W NM+AA
Sbjct: 297 SWVNMLAA 304




100|SequenceR|505|496|LPFGMQKTWT

>sp|RGYR2_SULTO|REVERSE gyrase 2|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 PFGMQKTW 9
PFG QK+W
Sbjct: 85 PFGPQKSW 92


>sp|RGYR1_SULAC|REVERSE gyrase 1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 PFGMQKTW 9
PFG QK+W
Sbjct: 88 PFGPQKSW 95


>sp|RGYR1_AERPE|REVERSE gyrase 1|Aeropyrum pernix (strain ATCC 700893

Query: 2 PFGMQKTW 9
P+G Q+TW
Sbjct: 91 PWGAQRTW 98


>sp|RGYR1_SACS2|REVERSE gyrase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 PFGMQKTWT 10
P G Q++WT
Sbjct: 89 PIGPQRSWT 97


>sp|SYM_METMJ|METHIONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 LPFGMQKTWT 10
+P MQ+ WT
Sbjct: 488 MPDAMQRAWT 497


>sp|AGLB1_ARCFU|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PFGMQKTW 9
PFG++ TW
Sbjct: 63 PFGLKITW 70


>sp|PSTOM_PYRHO|STOMATIN homolog PH1511|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LPFGMQK 7
LP GMQK
Sbjct: 168 LPAGMQK 174


>sp|SYN_THEKO|ASPARAGINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 FGMQKTWT 10
FG++K W+
Sbjct: 194 FGLEKVWS 201


>sp|SYN_PYRHO|ASPARAGINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 FGMQKTWT 10
FG++K W+
Sbjct: 198 FGLEKVWS 205


>sp|CAS3_HALVD|CRISPR-ASSOCIATED nuclease/helicase Cas3|Haloferax volcanii (strain ATCC 29605

Query: 1 LPFGMQKTWT 10
LP G+ KT+T
Sbjct: 306 LPTGLGKTFT 315


>sp|QUEC_SACS2|7-CYANO-7-DEAZAGUANINE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LPFGMQKTW 9
LP + KTW
Sbjct: 135 LPLLLDKTW 143


>sp|SYN_THEGJ|ASPARAGINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 3 FGMQKTWT 10
FG++K W+
Sbjct: 194 FGLEKVWS 201


>sp|SYN_PYRAB|ASPARAGINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 3 FGMQKTWT 10
FG++K W+
Sbjct: 198 FGLEKVWS 205


>sp|SYN_PYRFU|ASPARAGINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 FGMQKTWT 10
FG++K W+
Sbjct: 198 FGLEKVWS 205


>sp|CDPAS_STAMF|CDP-ARCHAEOL synthase|Staphylothermus marinus (strain ATCC 43588

Query: 3 FGMQKTW 9
FG KTW
Sbjct: 52 FGKNKTW 58


>sp|PDAD_NITMS|PYRUVOYL-DEPENDENT arginine decarboxylase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 LPFGMQKTW 9
+PF + K W
Sbjct: 133 IPFDVDKNW 141




101|SequenceR|510|501|AEVYILPFGM

>sp|Y054_METJA|UNCHARACTERIZED protein MJ0054|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 YILPFG 9
YI+PFG
Sbjct: 74 YIVPFG 79


>sp|Y1052_METJA|UPF0045 thiamine-binding protein family member|Methanocaldococcus

Query: 1 AEVYILPFG 9
AEV I+P G
Sbjct: 9 AEVSIIPLG 17


>sp|AMZA_ARCFU|ARCHAEMETZINCIN fulgidus (strain ATCC 49558

Query: 1 AEVYILP 7
AEV++LP
Sbjct: 28 AEVFVLP 34


>sp|RLME_THEVO|RIBOSOMAL RNA large subunit methyltransferase|Thermoplasma volcanium (strain

Query: 1 AEVYILPFG 9
+E+YI+ FG
Sbjct: 185 SEIYIMFFG 193


>sp|SYT_PYRCJ|THREONINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 EVYILPFG 9
EVY PFG
Sbjct: 107 EVYKAPFG 114


>sp|SYT_PYRNV|THREONINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 EVYILPFG 9
EVY PFG
Sbjct: 107 EVYKAPFG 114


>sp|SYT_PYRIL|THREONINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 EVYILPFG 9
EVY PFG
Sbjct: 107 EVYKAPFG 114


>sp|SYT_STAMF|THREONINE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 2 EVYILPFG 9
EVY PFG
Sbjct: 109 EVYRAPFG 116


>sp|SYT_NANEQ|THREONINE--TRNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 EVYILPFG 9
EVY PFG
Sbjct: 109 EVYKAPFG 116


>sp|Y516_AERPE|UPF0113 protein APE_0516.1|Aeropyrum pernix (strain ATCC 700893

Query: 2 EVYILPFGM 10
EV+ LP+G+
Sbjct: 53 EVFYLPWGL 61


>sp|CSA3_THETK|CRISPR locus-related putative DNA-binding protein|Thermoproteus tenax

Query: 2 EVYILP 7
EVY+LP
Sbjct: 104 EVYVLP 109


>sp|Y1215_PYRHO|PROBABLE ABC transporter permease protein|Pyrococcus horikoshii (strain ATCC

Query: 2 EVYILPFGM 10
+Y+LPF +
Sbjct: 105 TIYVLPFAL 113


>sp|SYH_THEKO|HISTIDINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 EVYILPFG 9
+VY++P G
Sbjct: 341 DVYVIPIG 348




102|SequenceR|515|506|DEVQEAEVYI

>sp|CCA_AERPE|CCA-ADDING enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 1 DEVQEAEVYI 10
DE EA VYI
Sbjct: 343 DEALEAAVYI 352


>sp|ACYP_METBU|ACYLPHOSPHATASE burtonii (strain DSM 6242

Query: 1 DEVQEAEVYI 10
D+V AE+Y+
Sbjct: 5 DDVSCAEIYV 14


>sp|PUR5_ARCFU|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 EVQEAEVY 9
EV+EAE+Y
Sbjct: 274 EVEEAEMY 281




103|SequenceR|520|511|RLLRDDEVQE

>sp|ORNAT_THEKO|ORNITHINE aminotransferase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 LLRDDEVQ 9
LL DDEVQ
Sbjct: 259 LLADDEVQ 266


>sp|BIOW_METRM|6-CARBOXYHEXANOATE--COA ligase|Methanobrevibacter ruminantium (strain ATCC 35063

Query: 1 RLLRDDEVQE 10
R+LR+DE++E
Sbjct: 30 RILREDEIEE 39


>sp|THIC_METM5|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus maripaludis (strain C5 /

Query: 1 RLLRDDEVQE 10
RL+++D+V+E
Sbjct: 334 RLMKEDDVKE 343


>sp|AATA_HYPBU|A-TYPE ATP synthase subunit A|Hyperthermus butylicus (strain DSM 5456

Query: 2 LLRDDEVQE 10
LLR+DE++E
Sbjct: 468 LLREDELRE 476


>sp|THIC_METM6|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus maripaludis (strain C6 /

Query: 1 RLLRDDEVQE 10
RL+++D+V+E
Sbjct: 334 RLMKEDDVKE 343


>sp|THIC_METMP|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 RLLRDDEVQE 10
RL+++D+V+E
Sbjct: 334 RLMKEDDVKE 343


>sp|THIC_METM7|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus maripaludis (strain C7 /

Query: 1 RLLRDDEVQE 10
RL+++D+V+E
Sbjct: 334 RLMKEDDVKE 343


>sp|FEN_HALWD|FLAP endonuclease 1|Haloquadratum walsbyi (strain DSM 16790

Query: 3 LRDDEVQE 10
L+D+EVQE
Sbjct: 88 LKDEEVQE 95


>sp|RGYR_THEKO|REVERSE gyrase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 RLLRDDEV 8
R+LRD+EV
Sbjct: 520 RVLRDEEV 527


>sp|MUTL_METTP|DNA mismatch repair protein MutL|Methanothrix thermoacetophila (strain

Query: 1 RLLRDDEV 8
R LR+DEV
Sbjct: 308 RFLREDEV 315


>sp|THIC_METVS|PHOSPHOMETHYLPYRIMIDINE synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 RLLRDDEVQE 10
RL++++EV+E
Sbjct: 334 RLMKEEEVKE 343


>sp|AATA_PYRFU|A-TYPE ATP synthase subunit A|Pyrococcus furiosus (strain ATCC 43587

Query: 1 RLLRDDEVQE 10
R+LR+D +Q+
Sbjct: 921 RMLREDYLQQ 930


>sp|AATA_AERPE|A-TYPE ATP synthase subunit A|Aeropyrum pernix (strain ATCC 700893

Query: 2 LLRDDEVQE 10
LLR+ E+QE
Sbjct: 473 LLRESELQE 481


>sp|DMD_SACS2|DIPHOSPHOMEVALONATE decarboxylase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 RLLRDDEVQE 10
R+L +DE++E
Sbjct: 62 RILSEDEMKE 71




104|SequenceR|525|516|KKQSLRLLRD

>sp|RS7_HALSA|SMALL ribosomal subunit protein uS7|Halobacterium salinarum (strain ATCC

Query: 1 KKQSLRLLRD 10
K+Q+L+++RD
Sbjct: 92 KQQALKIVRD 101


>sp|RS7_HALS3|SMALL ribosomal subunit protein uS7|Halobacterium salinarum (strain ATCC

Query: 1 KKQSLRLLRD 10
K+Q+L+++RD
Sbjct: 92 KQQALKIVRD 101




105|SequenceR|530|521|GGACFKKQSL

>sp|AGLM_HALVD|UDP-GLUCOSE 6-dehydrogenase AglM|Haloferax volcanii (strain ATCC 29605

Query: 1 GGACFKKQS 9
GG+CF K +
Sbjct: 266 GGSCFPKDT 274


>sp|CAPPA_METAC|PHOSPHOENOLPYRUVATE carboxylase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 GACFKKQS 9
GACFK+ S
Sbjct: 455 GACFKEVS 462


>sp|KPRS2_ARCFU|RIBOSE-PHOSPHATE pyrophosphokinase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GGACFKK 7
GGA FKK
Sbjct: 25 GGAVFKK 31


>sp|PYLS_METTE|PYRROLYSINE--TRNA ligase|Methanosarcina thermophila

Query: 2 GACFKKQS 9
G C++K+S
Sbjct: 350 GPCYRKES 357


>sp|PYLS_METMA|PYRROLYSINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GACFKKQS 9
G C++K+S
Sbjct: 326 GPCYRKES 333


>sp|PYLS_METBU|PYRROLYSINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 GACFKKQS 9
G C++K+S
Sbjct: 288 GPCYRKES 295


>sp|PYLS_METBF|PYRROLYSINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 GACFKKQS 9
G C++K+S
Sbjct: 291 GPCYRKES 298


>sp|PYLS_METBA|PYRROLYSINE--TRNA ligase|Methanosarcina barkeri

Query: 2 GACFKKQS 9
G C++K+S
Sbjct: 291 GPCYRKES 298


>sp|PYLS_METAC|PYRROLYSINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 GACFKKQS 9
G C++K+S
Sbjct: 315 GPCYRKES 322




106|SequenceR|535|526|EGVYSGGACF

>sp|SEPS_METKA|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 EGVYSG 6
EGVYSG
Sbjct: 466 EGVYSG 471


>sp|HELS_PYRCJ|ATP-DEPENDENT DNA helicase Hel308|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 EGVYSGG 7
EGVY GG
Sbjct: 206 EGVYHGG 212


>sp|LEU3_HALVD|3-ISOPROPYLMALATE dehydrogenase|Haloferax volcanii (strain ATCC 29605

Query: 1 EGVYSG 6
EGVYSG
Sbjct: 116 EGVYSG 121


>sp|SYA_THEPD|ALANINE--TRNA ligase|Thermofilum pendens (strain DSM 2475

Query: 3 VYSGGAC 9
VY GG C
Sbjct: 553 VYEGGEC 559


>sp|Y372_PYRAE|UPF0284 protein PAE0372|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 EGVYSGGACF 10
EGV GGA F
Sbjct: 299 EGVAMGGALF 308


>sp|PUS10_CENSY|TRNA pseudouridine synthase Pus10|Cenarchaeum symbiosum (strain A)

Query: 1 EGVYSGGAC 9
EGV SG AC
Sbjct: 190 EGVISGHAC 198


>sp|ARGB_METS3|ACETYLGLUTAMATE kinase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 EGVYSGG 7
EGV SGG
Sbjct: 240 EGVISGG 246


>sp|HICDH_PYRHO|ISOCITRATE/HOMOISOCITRATE dehydrogenase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 EGVYSGGACF 10
EG+YSG +
Sbjct: 115 EGLYSGEGAY 124


>sp|ARGB_METMA|ACETYLGLUTAMATE kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 EGVYSGG 7
EGV SGG
Sbjct: 241 EGVISGG 247


>sp|GFPS_METMA|GERANYLFARNESYL diphosphate synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GVYSGGA 8
G Y+GGA
Sbjct: 186 GAYTGGA 192


>sp|FENR_SACS2|FERREDOXIN--NADP reductase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GVYSGG 7
GVY+GG
Sbjct: 275 GVYAGG 280


>sp|PGP_PYRAE|PHOSPHOGLYCOLATE phosphatase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 EGVYSGGAC 9
E + SGGAC
Sbjct: 218 EIILSGGAC 226


>sp|Y1534_PYRCJ|UPF0284 protein Pcal_1534|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 EGVYSGGACF 10
EGV GGA F
Sbjct: 299 EGVGMGGALF 308




107|SequenceR|540|531|WQPCDEGVYS

>sp|PROA_METMA|GAMMA-GLUTAMYL phosphate reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 CDEGVYS 10
CDEG YS
Sbjct: 292 CDEGSYS 298


>sp|GLCDH_METS5|GLUCOSE 1-dehydrogenase|Metallosphaera sedula (strain ATCC 51363

Query: 1 WQPCDEGVYS 10
W CD+ YS
Sbjct: 169 WWRCDDSTYS 178


>sp|ENO_METLZ|ENOLASE labreanum (strain ATCC 43576

Query: 2 QPCDEGV 8
+PCDE V
Sbjct: 51 RPCDEAV 57


>sp|HUTI_THEVO|IMIDAZOLONEPROPIONASE volcanium (strain ATCC 51530

Query: 4 CDEGVYS 10
CDEG +S
Sbjct: 207 CDEGAFS 213


>sp|HUTI_HALMA|IMIDAZOLONEPROPIONASE marismortui (strain ATCC 43049

Query: 4 CDEGVYS 10
C+EGV+S
Sbjct: 218 CEEGVFS 224


>sp|RL2_IGNH4|LARGE ribosomal subunit protein uL2|Ignicoccus hospitalis (strain

Query: 1 WQPCDEGVYS 10
W P EG+Y+
Sbjct: 71 WIPAAEGMYT 80


>sp|TDXH_THEVO|PEROXIREDOXIN volcanium (strain ATCC 51530

Query: 1 WQPCDEGV 8
WQP EG+
Sbjct: 168 WQPGQEGI 175


>sp|Y696_METJA|UNCHARACTERIZED protein MJ0696|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 CDEGVY 9
CD+G+Y
Sbjct: 113 CDDGIY 118


>sp|TDXH2_THEAC|PEROXIREDOXIN 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 WQPCDEGV 8
WQP EG+
Sbjct: 164 WQPGQEGI 171


>sp|GLNA_METJA|GLUTAMINE synthetase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 WQPCDEGVY 9
W P D+G Y
Sbjct: 158 WVPADDGGY 166


>sp|EF2_METM7|ELONGATION factor 2|Methanococcus maripaludis (strain C7 /

Query: 2 QPCDEGVYS 10
+P DE VY+
Sbjct: 496 EPMDESVYA 504


>sp|EF2_METM6|ELONGATION factor 2|Methanococcus maripaludis (strain C6 /

Query: 2 QPCDEGVYS 10
+P DE VY+
Sbjct: 496 EPMDESVYA 504


>sp|DLDH2_HALMA|DIHYDROLIPOYL dehydrogenase 2|Haloarcula marismortui (strain ATCC 43049

Query: 1 WQPCDEGV 8
W+ DEG+
Sbjct: 246 WEETDEGI 253


>sp|THI4_PYRAR|THIAMINE thiazole synthase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 WQPCDEGVYS 10
+QP +G+Y+
Sbjct: 88 YQPAGDGLYT 97


>sp|TDXH2_PICTO|PEROXIREDOXIN 2|Picrophilus torridus (strain ATCC 700027

Query: 1 WQPCDEGV 8
W+P D+G+
Sbjct: 168 WRPGDKGI 175


>sp|SYI_METB6|ISOLEUCINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 1 WQPCDEGV 8
WQ CD+ +
Sbjct: 792 WQACDDAL 799


>sp|GLCD2_CALMQ|GLUCOSE 1-dehydrogenase 2|Caldivirga maquilingensis (strain ATCC 700844

Query: 4 CDEGVYS 10
CD+G Y+
Sbjct: 175 CDDGTYN 181


>sp|TRM56_AERPE|TRNA (cytidine(56)-2'-O)-methyltransferase|Aeropyrum pernix (strain

Query: 4 CDEGV 8
CDEGV
Sbjct: 47 CDEGV 51


>sp|Y1498_SULAC|PARB-LIKE protein Saci_1498|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 CDEGVYS 10
CD+ +YS
Sbjct: 121 CDDNIYS 127




108|SequenceR|545|536|TIPVMWQPCD

>sp|EF2_NANEQ|ELONGATION factor 2|Nanoarchaeum equitans (strain Kin4-M)

Query: 3 PVMWQPC 9
P+ W+PC
Sbjct: 591 PIAWEPC 597


>sp|RPO3_METJA|DNA-DIRECTED RNA polymerase subunit Rpo3|Methanocaldococcus jannaschii (strain

Query: 6 WQPCD 10
WQPC+
Sbjct: 137 WQPCN 141


>sp|NUCS_METJA|ENDONUCLEASE NucS|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PVMWQP 8
PV WQP
Sbjct: 74 PVNWQP 79


>sp|GLGA_METJA|PROBABLE glycogen synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IPVMWQPC 9
+P W+PC
Sbjct: 378 MPSYWEPC 385


>sp|SYFA_METAR|PHENYLALANINE--TRNA ligase alpha subunit|Methanocella arvoryzae (strain DSM 22066

Query: 1 TIPVMWQ 7
++PV+WQ
Sbjct: 488 SVPVVWQ 494


>sp|Y1393_METJA|UNCHARACTERIZED protein MJ1393|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IPVMWQPC 9
IPV+W C
Sbjct: 390 IPVVWANC 397


>sp|RAD25_HALSA|PUTATIVE DNA 3'-5' helicase Rad25|Halobacterium salinarum (strain ATCC

Query: 3 PVMWQPCD 10
PV+W P D
Sbjct: 59 PVVWYPRD 66


>sp|Y1394_METJA|UNCHARACTERIZED protein MJ1394|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IPVMWQPC 9
+P++W C
Sbjct: 770 VPIVWANC 777


>sp|TDXH1_SULME|PEROXIREDOXIN 1|Sulfuracidifex metallicus (Sulfolobus metallicus)

Query: 1 TIPVMWQP 8
++PV W+P
Sbjct: 164 SLPVDWEP 171


>sp|SYI_METB6|ISOLEUCINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 6 WQPCD 10
WQ CD
Sbjct: 792 WQACD 796




109|SequenceR|550|541|ESTSITIPVM

>sp|PDXS_AERPE|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Aeropyrum pernix (strain ATCC

Query: 3 TSITIPVM 10
+SITIPVM
Sbjct: 111 SSITIPVM 118


>sp|PDXS_SULTO|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Sulfurisphaera tokodaii

Query: 3 TSITIPVM 10
SITIPVM
Sbjct: 92 NSITIPVM 99


>sp|PDXS_SACS2|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus solfataricus

Query: 3 TSITIPVM 10
+SITIPVM
Sbjct: 114 SSITIPVM 121


>sp|PDXS_SULAC|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Sulfolobus acidocaldarius

Query: 3 TSITIPVM 10
SITIPVM
Sbjct: 112 NSITIPVM 119


>sp|PDXS_SACI7|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus (strain

Query: 4 SITIPVM 10
SITIPVM
Sbjct: 115 SITIPVM 121


>sp|PDXS_SACI6|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus (strain

Query: 4 SITIPVM 10
SITIPVM
Sbjct: 115 SITIPVM 121


>sp|PDXS_SACI4|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus (strain

Query: 4 SITIPVM 10
SITIPVM
Sbjct: 115 SITIPVM 121


>sp|PDXS_SACI3|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus (strain

Query: 4 SITIPVM 10
SITIPVM
Sbjct: 115 SITIPVM 121


>sp|PDXS_SACI2|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus (strain

Query: 4 SITIPVM 10
SITIPVM
Sbjct: 115 SITIPVM 121


>sp|PDXS_SACI1|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus (strain

Query: 4 SITIPVM 10
SITIPVM
Sbjct: 115 SITIPVM 121


>sp|PDXS_METS5|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Metallosphaera sedula (strain

Query: 4 SITIPVM 10
SITIPVM
Sbjct: 114 SITIPVM 120




110|SequenceR|555|546|AQNPDESTSI

>sp|IF1A_DESA1|TRANSLATION initiation factor 1A|Desulfurococcus amylolyticus (strain DSM

Query: 3 NPDESTSI 10
NPDE T I
Sbjct: 23 NPDEGTII 30


>sp|LYSZ_SULAC|[LYSW]-AMINOADIPATE/[LYSW]-GLUTAMATE kinase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 AQNPDEST 8
A +PDEST
Sbjct: 156 AYDPDEST 163


>sp|TBPB_HALSA|TATA-BOX-BINDING protein B|Halobacterium salinarum (strain ATCC 700922

Query: 1 AQNPDES 7
QNPDE+
Sbjct: 162 GQNPDEA 168


>sp|SYI_METAR|ISOLEUCINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 AQNPDESTSI 10
A+NPD T++
Sbjct: 889 AENPDVVTAV 898


>sp|GRPE_METAC|PROTEIN GrpE|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 AQNPDES 7
A+NPDE+
Sbjct: 201 ARNPDET 207


>sp|GRPE_METBF|PROTEIN GrpE|Methanosarcina barkeri (strain Fusaro /

Query: 1 AQNPDES 7
A+NPDE+
Sbjct: 201 ARNPDEA 207


>sp|TRPA_METB6|TRYPTOPHAN synthase alpha chain|Methanoregula boonei (strain DSM 21154

Query: 1 AQNPDESTSI 10
A +PD+ TSI
Sbjct: 23 AGDPDKETSI 32




111|SequenceR|560|551|LIKLKAQNPD

>sp|TAL_NITMS|PROBABLE transaldolase|Nitrosopumilus maritimus (strain SCM1)

Query: 3 KLKAQNPD 10
K+KA+NPD
Sbjct: 212 KVKAENPD 219


>sp|RNZ_METM6|RIBONUCLEASE Z|Methanococcus maripaludis (strain C6 /

Query: 1 LIKLKAQNPD 10
+++ KA+NPD
Sbjct: 284 IVEFKAENPD 293


>sp|RL18_PYRAR|LARGE ribosomal subunit protein uL18|Pyrobaculum arsenaticum (strain DSM

Query: 3 KLKAQNPD 10
KLK +NPD
Sbjct: 154 KLKEENPD 161


>sp|Y1428_METJA|TPR repeat-containing protein MJ1428|Methanocaldococcus jannaschii

Query: 2 IKLKAQNP 9
IKL +QNP
Sbjct: 295 IKLNSQNP 302


>sp|GCSH2_SULTO|PROBABLE glycine cleavage system H|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LIKLKAQNPD 10
L+K+K NP+
Sbjct: 110 LVKMKVNNPE 119


>sp|RNZ_METMP|RIBONUCLEASE Z|Methanococcus maripaludis (strain DSM 14266

Query: 1 LIKLKAQNPD 10
+++ KA+NP+
Sbjct: 284 IVEFKAENPE 293


>sp|GCSH2_SACS2|PROBABLE glycine cleavage system H|Saccharolobus solfataricus (strain ATCC

Query: 1 LIKLKAQNPD 10
L+K+K NP+
Sbjct: 110 LVKMKMSNPE 119


>sp|HELS_HALMA|ATP-DEPENDENT DNA helicase Hel308|Haloarcula marismortui (strain ATCC 43049

Query: 1 LIKLKAQNPD 10
L KL+ NPD
Sbjct: 163 LAKLRRLNPD 172


>sp|CARA_ARCFU|CARBAMOYL phosphate synthase small chain|Archaeoglobus fulgidus (strain ATCC

Query: 3 KLKAQNPD 10
K+K NPD
Sbjct: 208 KIKEMNPD 215


>sp|ADEC_METST|ADENINE deaminase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 LKAQNP 9
LKAQNP
Sbjct: 346 LKAQNP 351


>sp|SYS_THEON|SERINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 2 IKLKAQNPD 10
IKL +NPD
Sbjct: 4 IKLIRENPD 12


>sp|AMPPA_METBU|AMP phosphorylase|Methanococcoides burtonii (strain DSM 6242

Query: 1 LIKLKAQNPD 10
+IK++ NPD
Sbjct: 393 IIKIQGGNPD 402


>sp|SYS_THESM|SERINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 2 IKLKAQNPD 10
IKL +NPD
Sbjct: 4 IKLIRENPD 12




112|SequenceR|565|556|EPKDMLIKLK

>sp|FDHD_METTH|SULFUR carrier protein FdhD|Methanothermobacter thermautotrophicus (strain

Query: 2 PKDMLIKL 9
P DMLIK+
Sbjct: 193 PADMLIKV 200


>sp|THS_METJA|THERMOSOME subunit|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EPKDMLIKLK 10
+P DML+KL+
Sbjct: 455 DPIDMLVKLR 464


>sp|GUAA_AERPE|GMP synthase [glutamine-hydrolyzing]|Aeropyrum pernix (strain ATCC

Query: 2 PKDMLIKL 9
PKDM +KL
Sbjct: 352 PKDMRLKL 359


>sp|PORB_METBF|PYRUVATE synthase subunit PorB|Methanosarcina barkeri (strain Fusaro /

Query: 2 PKDMLIKLK 10
P+DM+ K+K
Sbjct: 185 PRDMIRKVK 193


>sp|SYV_PYRFU|VALINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 PKDMLIKLK 10
P+DM ++LK
Sbjct: 378 PEDMFLRLK 386


>sp|SYV_PYRHO|VALINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 PKDMLIKLK 10
P+DM ++LK
Sbjct: 378 PEDMFLRLK 386


>sp|SYV_PYRAB|VALINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 PKDMLIKLK 10
P+DM ++LK
Sbjct: 378 PEDMFLRLK 386


>sp|RLME_METS3|RIBOSOMAL RNA large subunit methyltransferase|Methanobrevibacter smithii

Query: 1 EPKDMLIKLK 10
E KDML +LK
Sbjct: 163 EYKDMLTRLK 172


>sp|ENO_PYRFU|ENOLASE furiosus (strain ATCC 43587

Query: 1 EPKDMLIK 8
EP D+LIK
Sbjct: 220 EPLDVLIK 227


>sp|ENO_PYRAB|ENOLASE abyssi (strain GE5 /

Query: 1 EPKDMLIK 8
EP D+LIK
Sbjct: 220 EPLDVLIK 227


>sp|THSB_SULTO|CHAPERONIN subunit beta|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 EPKDMLIKLK 10
+P D+L+KL+
Sbjct: 465 DPIDLLVKLR 474


>sp|ENO_THEKO|ENOLASE kodakarensis (strain ATCC BAA-918

Query: 1 EPKDMLIK 8
EP D+LIK
Sbjct: 220 EPLDVLIK 227


>sp|GATD_NANEQ|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 EPKDMLIKLK 10
EP LIKLK
Sbjct: 23 EPNYYLIKLK 32


>sp|SYV_THEKO|VALINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 PKDMLIKLK 10
P DM ++LK
Sbjct: 378 PPDMFLRLK 386




113|SequenceR|570|561|LVVNMEPKDM

>sp|THIC_METMJ|PHOSPHOMETHYLPYRIMIDINE synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 VVNMEPKDM 10
VV+MEP D+
Sbjct: 136 VVHMEPDDL 144


>sp|NPD_CALMQ|NAD-DEPENDENT protein deacetylase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 LVVNMEPKD 9
+++N+EP D
Sbjct: 217 IIINLEPTD 225


>sp|THI4_METMJ|THIAMINE thiazole synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 LVVNMEPKDM 10
LVVN P DM
Sbjct: 141 LVVNWTPVDM 150


>sp|SYM_HALSA|METHIONINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 LVVNMEPKDM 10
+V NMEP ++
Sbjct: 648 VVANMEPSEL 657


>sp|THIOL_METJA|ACETYL-COA acetyltransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 VVNMEPKDM 10
+ N+EPKD+
Sbjct: 270 MANIEPKDV 278


>sp|THIC2_METST|PHOSPHOMETHYLPYRIMIDINE synthase 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 VNMEPKDM 10
+NM+P DM
Sbjct: 137 INMDPDDM 144


>sp|SYM_PYRFU|METHIONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LVVNMEPKDM 10
+V N+EPK +
Sbjct: 681 IVANLEPKKL 690


>sp|TMCA_THEPD|TRNA(MET) cytidine acetyltransferase TmcA|Thermofilum pendens (strain DSM

Query: 1 LVVNMEPKDM 10
LV N+EP D+
Sbjct: 109 LVNNLEPNDL 118


>sp|SYM_PYRHO|METHIONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LVVNMEPKDM 10
+V N+EPK +
Sbjct: 680 IVANLEPKKL 689


>sp|SYM_THEON|METHIONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 1 LVVNMEPKDM 10
++ N+EPK +
Sbjct: 690 IIANLEPKKL 699


>sp|SYM_THEKO|METHIONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 LVVNMEPKDM 10
++ N+EPK +
Sbjct: 698 IIANLEPKKL 707


>sp|SYM_PYRAB|METHIONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 LVVNMEPKDM 10
+V N+EPK +
Sbjct: 679 VVANLEPKKL 688




114|SequenceR|575|566|PKVNKLVVNM

>sp|RSMA_METBU|PROBABLE ribosomal RNA small subunit|Methanococcoides burtonii (strain DSM

Query: 1 PKVNKLVVNM 10
PK NK+V N+
Sbjct: 99 PKFNKVVANL 108


>sp|RL5_METJA|LARGE ribosomal subunit protein uL5|Methanocaldococcus jannaschii

Query: 1 PKVNKLVVN 9
P++ K+VVN
Sbjct: 15 PRIEKVVVN 23


>sp|NTPTH_PYRCJ|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 PKVNKLVVNM 10
P V K VVN+
Sbjct: 77 PSVGKYVVNL 86


>sp|NTPTH_PYRAE|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PKVNKLVVNM 10
P V K VVN+
Sbjct: 76 PSVGKYVVNL 85


>sp|RL5_META3|LARGE ribosomal subunit protein uL5|Methanococcus aeolicus (strain ATCC

Query: 1 PKVNKLVVNM 10
P++ K+ VNM
Sbjct: 15 PRIEKVTVNM 24


>sp|RL5_METKA|LARGE ribosomal subunit protein uL5|Methanopyrus kandleri (strain AV19

Query: 1 PKVNKLVVNM 10
P+V K+ VN+
Sbjct: 24 PRVGKVTVNI 33


>sp|Y954_METJA|UNCHARACTERIZED protein MJ0954|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PKVNKLV 7
PKVNK+V
Sbjct: 356 PKVNKIV 362


>sp|Y735_METS5|UPF0284 protein Msed_0735|Metallosphaera sedula (strain ATCC 51363

Query: 3 VNKLVVN 9
VNKLVVN
Sbjct: 90 VNKLVVN 96


>sp|Y1676_METJA|UNCHARACTERIZED protein MJ1676|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PKVNKLV 7
PKVN+LV
Sbjct: 21 PKVNELV 27


>sp|RSMA_PYRHO|PROBABLE ribosomal RNA small subunit|Pyrococcus horikoshii (strain ATCC

Query: 1 PKVNKLVVNM 10
PK NK+V N+
Sbjct: 102 PKFNKVVSNI 111


>sp|RRP4_NITMS|EXOSOME complex component Rrp4|Nitrosopumilus maritimus (strain SCM1)

Query: 1 PKVNKLVV 8
PK+N LV+
Sbjct: 58 PKINDLVI 65




115|SequenceR|580|571|KVWQDPKVNK

>sp|END4_HALMA|PROBABLE endonuclease 4|Haloarcula marismortui (strain ATCC 43049

Query: 1 KVWQDPKVN 9
+VWQDP ++
Sbjct: 37 QVWQDPNID 45


>sp|END4_HALWD|PROBABLE endonuclease 4|Haloquadratum walsbyi (strain DSM 16790

Query: 1 KVWQDPKVN 9
+VWQDP ++
Sbjct: 36 QVWQDPSID 44


>sp|END4_NATPD|PROBABLE endonuclease 4|Natronomonas pharaonis (strain ATCC 35678

Query: 1 KVWQDPKV 8
+VWQDP +
Sbjct: 37 QVWQDPNI 44


>sp|END4_HALSA|PROBABLE endonuclease 4|Halobacterium salinarum (strain ATCC 700922

Query: 1 KVWQDPKV 8
+VWQDP +
Sbjct: 36 QVWQDPNI 43


>sp|END4_HALS3|PROBABLE endonuclease 4|Halobacterium salinarum (strain ATCC 29341

Query: 1 KVWQDPKV 8
+VWQDP +
Sbjct: 36 QVWQDPNI 43


>sp|TOP6B_HALMA|TYPE 2 DNA topoisomerase 6|Haloarcula marismortui (strain ATCC 43049

Query: 3 WQDPKVNK 10
WQ PKVN+
Sbjct: 300 WQPPKVNE 307


>sp|RL31_THEAC|LARGE ribosomal subunit protein eL31|Thermoplasma acidophilum (strain

Query: 1 KVWQDPKVNK 10
K+W DPKV++
Sbjct: 49 KIWIDPKVSE 58


>sp|ASPD_METHJ|L-ASPARTATE dehydrogenase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 KVWQDPKVNK 10
++W DP+V++
Sbjct: 191 ELWADPEVDR 200


>sp|RTCB_PYRHO|TRNA-SPLICING ligase RtcB|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 WQDPKV 8
W+DPKV
Sbjct: 237 WKDPKV 242


>sp|RTCB_METKA|TRNA-SPLICING ligase RtcB|Methanopyrus kandleri (strain AV19 /

Query: 3 WQDPKV 8
W DPKV
Sbjct: 240 WSDPKV 245


>sp|RL37_STAMF|LARGE ribosomal subunit protein eL37|Staphylothermus marinus (strain

Query: 3 WQDPKVNK 10
WQ+ KVN+
Sbjct: 51 WQNKKVNR 58


>sp|RTCB_PYRFU|TRNA-SPLICING ligase RtcB|Pyrococcus furiosus (strain ATCC 43587

Query: 3 WQDPKV 8
W+DPK+
Sbjct: 245 WEDPKI 250


>sp|FMDC_METBF|MOLYBDENUM-CONTAINING formylmethanofuran dehydrogenase 1 subunit|Methanosarcina barkeri

Query: 2 VWQDPK 7
VWQ PK
Sbjct: 71 VWQGPK 76


>sp|Y1650_METJA|UNCHARACTERIZED protein MJ1650|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KVWQDPK 7
K+WQ PK
Sbjct: 67 KIWQTPK 73


>sp|Y3887_METAC|UPF0284 protein MA_3887|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 WQDPKVNK 10
W DP+V K
Sbjct: 3 WIDPEVTK 10


>sp|Y1570_METJA|UNCHARACTERIZED protein MJ1570|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 WQDPKVNK 10
WQDP V K
Sbjct: 3 WQDPLVKK 10


>sp|Y1039_PYRHO|UNCHARACTERIZED ABC transporter extracellular-binding protein|Pyrococcus horikoshii

Query: 3 WQDPKVNK 10
W+DP+V K
Sbjct: 237 WEDPQVRK 244


>sp|Y642_METMP|UPF0285 protein MMP0642|Methanococcus maripaludis (strain DSM 14266

Query: 3 WQDPKVNK 10
W++P V+K
Sbjct: 275 WENPNVSK 282


>sp|DNLI_CENSY|DNA ligase|Cenarchaeum symbiosum (strain A)

Query: 2 VWQDPKV 8
VW DP+V
Sbjct: 511 VWFDPEV 517


>sp|KATG_ARCFU|CATALASE-PEROXIDASE fulgidus (strain ATCC 49558

Query: 2 VWQDP 6
VWQDP
Sbjct: 415 VWQDP 419


>sp|QUED_PYRAB|PUTATIVE 6-carboxy-5,6,7,8-tetrahydropterin synthase|Pyrococcus abyssi

Query: 1 KVWQDPK 7
+VW+DP+
Sbjct: 137 RVWEDPR 143


>sp|Y962_METM5|UPF0285 protein MmarC5_0962|Methanococcus maripaludis (strain C5 /

Query: 2 VWQDPKVNK 10
+W++P V++
Sbjct: 274 IWENPNVSE 282


>sp|PDXS_METS5|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Metallosphaera sedula (strain

Query: 3 WQDPKV 8
W+DP++
Sbjct: 299 WEDPEI 304


>sp|PURL_PYRFU|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrococcus furiosus (strain ATCC 43587

Query: 1 KVWQDPKV 8
KVW+ P V
Sbjct: 385 KVWRSPNV 392


>sp|GYAR_THELN|GLYOXYLATE reductase|Thermococcus litoralis (strain ATCC 51850

Query: 1 KVWQDPK 7
++W+DPK
Sbjct: 26 ELWKDPK 32


>sp|DNLI_PYRFU|DNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 KVWQDPKV 8
+VW PKV
Sbjct: 494 RVWLQPKV 501


>sp|RL37_METKA|LARGE ribosomal subunit protein eL37|Methanopyrus kandleri (strain AV19

Query: 3 WQDPKVNK 10
WQ+ KVN+
Sbjct: 51 WQNKKVNR 58


>sp|PDXS_SULAC|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Sulfolobus acidocaldarius

Query: 3 WQDPKV 8
W+DP++
Sbjct: 298 WEDPEI 303


>sp|KATG_METB6|CATALASE-PEROXIDASE boonei (strain DSM 21154

Query: 2 VWQDP 6
+WQDP
Sbjct: 428 IWQDP 432


>sp|KATG_METAC|CATALASE-PEROXIDASE acetivorans (strain ATCC 35395

Query: 2 VWQDP 6
+WQDP
Sbjct: 433 IWQDP 437


>sp|KATG1_HALMA|CATALASE-PEROXIDASE 1|Haloarcula marismortui (strain ATCC 43049

Query: 2 VWQDP 6
+WQDP
Sbjct: 427 IWQDP 431


>sp|PDXS_SULTO|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Sulfurisphaera tokodaii (strain

Query: 3 WQDPKV 8
W+DP++
Sbjct: 278 WEDPEI 283


>sp|KATG_NATPD|CATALASE-PEROXIDASE pharaonis (strain ATCC 35678

Query: 2 VWQDP 6
+WQDP
Sbjct: 410 IWQDP 414


>sp|QUED_PYRHO|PUTATIVE 6-carboxy-5,6,7,8-tetrahydropterin synthase|Pyrococcus horikoshii

Query: 1 KVWQDPK 7
++W+DP+
Sbjct: 137 RIWEDPR 143


>sp|KATG_METHJ|CATALASE-PEROXIDASE hungatei JF-1 (strain ATCC

Query: 2 VWQDP 6
+WQDP
Sbjct: 428 IWQDP 432


>sp|DNLI_PYRAY|DNA ligase|Pyrococcus abyssi

Query: 1 KVWQDPKV 8
+VW PKV
Sbjct: 494 RVWIQPKV 501


>sp|RGYR_PYRAB|REVERSE gyrase|Pyrococcus abyssi (strain GE5 /

Query: 1 KVWQDPKVN 9
K W+ PKV+
Sbjct: 1102 KQWRAPKVS 1110


>sp|ASSY_THEAC|ARGININOSUCCINATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 VWQDPKVN 9
+W DP +N
Sbjct: 308 LWHDPVMN 315


>sp|DTDA_CALMQ|D-AMINOACYL-TRNA deacylase|Caldivirga maquilingensis (strain ATCC 700844

Query: 3 WQDPKVNK 10
W+DPK +
Sbjct: 157 WRDPKAQE 164


>sp|KATG_HALSA|CATALASE-PEROXIDASE salinarum (strain ATCC 700922

Query: 2 VWQDP 6
+WQDP
Sbjct: 417 IWQDP 421


>sp|KATG_HALS3|CATALASE-PEROXIDASE salinarum (strain ATCC 29341

Query: 2 VWQDP 6
+WQDP
Sbjct: 417 IWQDP 421


>sp|DNLI_PYRAB|DNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 KVWQDPKV 8
+VW PKV
Sbjct: 494 RVWIQPKV 501




116|SequenceR|585|576|TGLNLKVWQD

>sp|MTD_METLZ|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanocorpusculum

Query: 4 NLKVWQ 9
NLK WQ
Sbjct: 54 NLKAWQ 59


>sp|GUAAB_METVS|GMP synthase [glutamine-hydrolyzing] subunit B|Methanococcus vannielii

Query: 1 TGLNLKVWQ 9
TGL ++WQ
Sbjct: 223 TGLQKELWQ 231


>sp|Y1383_METJA|UNCHARACTERIZED protein MJ1383|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 NLKVWQ 9
N+KVW+
Sbjct: 38 NIKVWE 43


>sp|RIFK_HALWD|RIBOFLAVIN kinase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 TGLNLKVWQD 10
TG+ + W+D
Sbjct: 157 TGIQIDGWED 166




117|SequenceR|590|581|RYFGVTGLNL

>sp|AROE_METAR|SHIKIMATE dehydrogenase (NADP(+))|Methanocella arvoryzae (strain DSM 22066

Query: 1 RYFGVTGLNL 10
RY G GLN+
Sbjct: 52 RYLGFGGLNV 61


>sp|GLYA_METHJ|SERINE hydroxymethyltransferase|Methanospirillum hungatei JF-1 (strain

Query: 3 FGVTGL 8
FG+TGL
Sbjct: 320 FGITGL 325


>sp|Y1859_ARCFU|UNCHARACTERIZED protein AF_1859|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 RYFGVTGLN 9
RY G GLN
Sbjct: 119 RYLGKMGLN 127


>sp|PRIS_METST|DNA primase small subunit PriS|Methanosphaera stadtmanae (strain ATCC

Query: 3 FGVTGLNL 10
FG+T +NL
Sbjct: 138 FGLTNINL 145


>sp|NARG_HALMT|RESPIRATORY nitrate reductase subunit alpha|Haloferax mediterranei (strain ATCC

Query: 2 YFGVTGLN 9
Y+G TG+N
Sbjct: 962 YWGPTGVN 969


>sp|ECFA_METAC|ENERGY-COUPLING factor transporter ATP-binding protein|Methanosarcina acetivorans

Query: 2 YFGVTGLN 9
Y G+TG N
Sbjct: 30 YIGITGKN 37




118|SequenceR|595|586|SSYQTRYFGV

>sp|GPDA_ARCFU|NADP(+)-DEPENDENT glycerol-3-phosphate dehydrogenase|Archaeoglobus fulgidus (strain

Query: 3 YQTRYFGV 10
++T YFGV
Sbjct: 169 FETEYFGV 176


>sp|COFC_METMA|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SSYQTRYFG 9
S Y+ +Y+G
Sbjct: 132 SKYRVKYYG 140


>sp|DPO4_HALSA|DNA polymerase IV|Halobacterium salinarum (strain ATCC 700922

Query: 1 SSYQTRYFGV 10
+SY+ R +GV
Sbjct: 61 ASYEAREYGV 70


>sp|DPO4_HALS3|DNA polymerase IV|Halobacterium salinarum (strain ATCC 29341

Query: 1 SSYQTRYFGV 10
+SY+ R +GV
Sbjct: 61 ASYEAREYGV 70




119|SequenceR|600|591|SELMASSYQT

***** No hits found ******


120|SequenceR|605|596|IGPLLSELMA

>sp|DTDA_METHJ|D-AMINOACYL-TRNA deacylase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 GPLLSELMA 10
GPL SELMA
Sbjct: 402 GPLYSELMA 410


>sp|RL10_METVS|LARGE ribosomal subunit protein uL10|Methanococcus vannielii (strain ATCC

Query: 2 GPLLSELMA 10
GP LSEL A
Sbjct: 139 GPFLSELKA 147


>sp|RL10_METMP|LARGE ribosomal subunit protein uL10|Methanococcus maripaludis (strain

Query: 2 GPLLSELMA 10
GP LSEL A
Sbjct: 139 GPFLSELKA 147


>sp|RL10_METM6|LARGE ribosomal subunit protein uL10|Methanococcus maripaludis (strain C6

Query: 2 GPLLSELMA 10
GP LSEL A
Sbjct: 139 GPFLSELKA 147


>sp|RL10_METM7|LARGE ribosomal subunit protein uL10|Methanococcus maripaludis (strain C7

Query: 2 GPLLSELMA 10
GP LSEL A
Sbjct: 139 GPFLSELKA 147


>sp|RL10_METM5|LARGE ribosomal subunit protein uL10|Methanococcus maripaludis (strain C5

Query: 2 GPLLSELMA 10
GP LSEL A
Sbjct: 139 GPFLSELKA 147


>sp|RL10_METVO|LARGE ribosomal subunit protein uL10|Methanococcus voltae

Query: 2 GPLLSELMA 10
GP LSEL A
Sbjct: 139 GPFLSELKA 147


>sp|SYE_HYPBU|GLUTAMATE--TRNA ligase|Hyperthermus butylicus (strain DSM 5456

Query: 1 IGPLLSELMA 10
+GP++ ++MA
Sbjct: 13 VGPVMGKIMA 22


>sp|DLDH_HALVD|DIHYDROLIPOYL dehydrogenase|Haloferax volcanii (strain ATCC 29605

Query: 1 IGPLLSELMA 10
+GP SEL+A
Sbjct: 420 VGPEASELIA 429


>sp|DLDH3_HALMA|DIHYDROLIPOYL dehydrogenase 3|Haloarcula marismortui (strain ATCC 43049

Query: 1 IGPLLSELMA 10
+GP SEL+A
Sbjct: 423 VGPEASELIA 432


>sp|DLDH2_HALMA|DIHYDROLIPOYL dehydrogenase 2|Haloarcula marismortui (strain ATCC 43049

Query: 1 IGPLLSELMA 10
+GP SEL+A
Sbjct: 419 VGPEASELIA 428




121|SequenceR|610|601|LSLDRIGPLL

>sp|GATA_METS3|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanobrevibacter smithii (strain ATCC

Query: 1 LSLDRIGPL 9
+SLD+IGPL
Sbjct: 203 MSLDQIGPL 211


>sp|GATA_METVS|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanococcus vannielii (strain ATCC

Query: 1 LSLDRIGPL 9
+S D+IGPL
Sbjct: 184 MSFDQIGPL 192


>sp|GATA_METST|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanosphaera stadtmanae (strain ATCC

Query: 1 LSLDRIGPL 9
+SLD+IGP
Sbjct: 203 MSLDQIGPF 211


>sp|GATA_METMP|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanococcus maripaludis (strain DSM

Query: 1 LSLDRIGPL 9
+S D+IGPL
Sbjct: 184 MSFDQIGPL 192


>sp|GATA_METM7|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanococcus maripaludis (strain C7 /

Query: 1 LSLDRIGPL 9
+S D+IGPL
Sbjct: 184 MSFDQIGPL 192


>sp|GATA_METM6|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanococcus maripaludis (strain C6 /

Query: 1 LSLDRIGPL 9
+S D+IGPL
Sbjct: 184 MSFDQIGPL 192


>sp|GATA_METM5|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanococcus maripaludis (strain C5 /

Query: 1 LSLDRIGPL 9
+S D+IGPL
Sbjct: 184 MSFDQIGPL 192


>sp|GATA_METJA|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanocaldococcus jannaschii (strain

Query: 1 LSLDRIGPL 9
+S D+IGPL
Sbjct: 186 MSFDQIGPL 194


>sp|DNAG_META3|DNA primase DnaG|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 SLDRIGPLL 10
+LDR+GP +
Sbjct: 92 TLDRVGPCI 100


>sp|GATA_METTH|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanothermobacter thermautotrophicus

Query: 1 LSLDRIGPL 9
+S D+IGPL
Sbjct: 206 MSFDQIGPL 214


>sp|DNAG_THEVO|DNA primase DnaG|Thermoplasma volcanium (strain ATCC 51530

Query: 2 SLDRIGP 8
++DRIGP
Sbjct: 106 TIDRIGP 112


>sp|DNAG_THEAC|DNA primase DnaG|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 SLDRIGP 8
++DRIGP
Sbjct: 106 TIDRIGP 112


>sp|DNAG_PICTO|DNA primase DnaG|Picrophilus torridus (strain ATCC 700027

Query: 2 SLDRIGP 8
++DRIGP
Sbjct: 92 TIDRIGP 98


>sp|DNAG_METLZ|DNA primase DnaG|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 SLDRIGPLL 10
++DRIGP +
Sbjct: 91 TIDRIGPCM 99


>sp|SRP54_HALWD|SIGNAL recognition particle 54 kDa|Haloquadratum walsbyi (strain DSM 16790

Query: 2 SLDRIGPL 9
++DR+GPL
Sbjct: 336 AMDRMGPL 343


>sp|DNAG_HALLT|DNA primase DnaG|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 SLDRIGP 8
++DRIGP
Sbjct: 89 TIDRIGP 95


>sp|DNAG_METTP|DNA primase DnaG|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 SLDRIGPLL 10
++DR+GP +
Sbjct: 91 TIDRVGPCM 99


>sp|DNAG_THEON|DNA primase DnaG|Thermococcus onnurineus (strain NA1)

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 120 TIDRVGP 126


>sp|DNAG_THEKO|DNA primase DnaG|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 118 TIDRVGP 124


>sp|DNAG_THEGJ|DNA primase DnaG|Thermococcus gammatolerans (strain DSM 15229

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 119 TIDRVGP 125


>sp|DNAG_PYRHO|DNA primase DnaG|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 120 TIDRVGP 126


>sp|DNAG_NATPD|DNA primase DnaG|Natronomonas pharaonis (strain ATCC 35678

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 89 TIDRVGP 95


>sp|DNAG_METVS|DNA primase DnaG|Methanococcus vannielii (strain ATCC 35089

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 90 TIDRVGP 96


>sp|DNAG_METMP|DNA primase DnaG|Methanococcus maripaludis (strain DSM 14266

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 90 TIDRVGP 96


>sp|DNAG_METM7|DNA primase DnaG|Methanococcus maripaludis (strain C7 /

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 90 TIDRVGP 96


>sp|DNAG_METM6|DNA primase DnaG|Methanococcus maripaludis (strain C6 /

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 90 TIDRVGP 96


>sp|DNAG_METM5|DNA primase DnaG|Methanococcus maripaludis (strain C5 /

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 90 TIDRVGP 96


>sp|DAPF_METTH|DIAMINOPIMELATE epimerase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 LSLDRIGPLL 10
+ LDR+GP +
Sbjct: 178 VDLDRLGPAI 187


>sp|DNAG_STAMF|DNA primase DnaG|Staphylothermus marinus (strain ATCC 43588

Query: 2 SLDRIGP 8
S+DR+GP
Sbjct: 86 SVDRVGP 92


>sp|DNAG_PYRAB|DNA primase DnaG|Pyrococcus abyssi (strain GE5 /

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 120 TIDRVGP 126


>sp|DNAG_METAR|DNA primase DnaG|Methanocella arvoryzae (strain DSM 22066

Query: 2 SLDRIGPLL 10
++DR+GP +
Sbjct: 91 TIDRVGPCI 99


>sp|DNAG_METBF|DNA primase DnaG|Methanosarcina barkeri (strain Fusaro /

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 91 TIDRVGP 97


>sp|DNAG_PYRFU|DNA primase DnaG|Pyrococcus furiosus (strain ATCC 43587

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 120 TIDRVGP 126


>sp|DNAG_METMA|DNA primase DnaG|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 91 TIDRVGP 97


>sp|DNAG_METAC|DNA primase DnaG|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 91 TIDRVGP 97


>sp|DNAG_METJA|DNA primase DnaG|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 93 TIDRVGP 99


>sp|DNAG_METBU|DNA primase DnaG|Methanococcoides burtonii (strain DSM 6242

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 91 TIDRVGP 97


>sp|DNAG_THEPD|DNA primase DnaG|Thermofilum pendens (strain DSM 2475

Query: 2 SLDRIGP 8
S+D++GP
Sbjct: 92 SIDKVGP 98


>sp|DNAG_METB6|DNA primase DnaG|Methanoregula boonei (strain DSM 21154

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 91 TIDRVGP 97


>sp|DNAG_METMJ|DNA primase DnaG|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 91 TIDRVGP 97


>sp|DNAG_METPE|DNA primase DnaG|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 SLDRIGP 8
++DR+GP
Sbjct: 91 TIDRVGP 97


>sp|GLMM_THEON|PROBABLE phosphoglucosamine mutase|Thermococcus onnurineus (strain NA1)

Query: 3 LDRIGPL 9
+DR+GP+
Sbjct: 343 IDRLGPI 349


>sp|GLMM_THEGJ|PROBABLE phosphoglucosamine mutase|Thermococcus gammatolerans (strain DSM

Query: 3 LDRIGPL 9
+DR+GP+
Sbjct: 343 IDRLGPI 349


>sp|GLMM_PYRHO|PROBABLE phosphoglucosamine mutase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 LDRIGPL 9
+DR+GP+
Sbjct: 343 IDRLGPI 349


>sp|GLMM_THEKO|PROBABLE phosphoglucosamine mutase|Thermococcus kodakarensis (strain ATCC

Query: 3 LDRIGPL 9
+DR+GP+
Sbjct: 343 IDRLGPI 349


>sp|AATA_SULTO|A-TYPE ATP synthase subunit A|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 LDRIGPL 9
LD++GP+
Sbjct: 548 LDKVGPI 554




122|SequenceR|615|606|RDVPPLSLDR

>sp|PFP_THETK|PYROPHOSPHATE--FRUCTOSE 6-phosphate 1-phosphotransferase|Thermoproteus tenax (strain ATCC

Query: 1 RDVPPLSLDR 10
R VPP + DR
Sbjct: 266 RGVPPTAFDR 275


>sp|Y1064_METJA|UNCHARACTERIZED acetyltransferase MJ1064|Methanocaldococcus jannaschii (strain ATCC

Query: 1 RDVPPLSL 8
RD+PP S+
Sbjct: 194 RDIPPYSV 201


>sp|IF6_THEVO|TRANSLATION initiation factor 6|Thermoplasma volcanium (strain ATCC 51530

Query: 1 RDVPPLSLDR 10
RD P+ +DR
Sbjct: 203 RDTTPIEIDR 212


>sp|PGP_HALLT|PHOSPHOGLYCOLATE phosphatase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 VPPLSLD 9
VPPL+LD
Sbjct: 2 VPPLALD 8


>sp|PURL_HALMA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Haloarcula marismortui (strain ATCC 43049

Query: 1 RDVPPLSLDR 10
RD+P +SLD
Sbjct: 380 RDLPTVSLDE 389


Query: 2 DVPPLSL 8
D PPLSL
Sbjct: 546 DAPPLSL 552


>sp|RL2_STAMF|LARGE ribosomal subunit protein uL2|Staphylothermus marinus (strain

Query: 4 PPLSLDR 10
PPL LDR
Sbjct: 31 PPLKLDR 37


>sp|PSB1_CENSY|PROTEASOME subunit beta 1|Cenarchaeum symbiosum (strain A)

Query: 1 RDVPPLSLDR 10
RD+PP S+ +
Sbjct: 75 RDIPPNSVAK 84


>sp|GATB_METST|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Methanosphaera stadtmanae (strain ATCC

Query: 2 DVPPLSLD 9
D+PPL +D
Sbjct: 252 DLPPLKID 259


>sp|CAPPA_PICTO|PHOSPHOENOLPYRUVATE carboxylase|Picrophilus torridus (strain ATCC 700027

Query: 1 RDVPPL 6
RD+PP+
Sbjct: 123 RDIPPI 128


>sp|CARB_ARCFU|CARBAMOYL phosphate synthase large chain|Archaeoglobus fulgidus (strain ATCC

Query: 3 VPPLSLD 9
+PP+SLD
Sbjct: 797 LPPVSLD 803


>sp|RPO3_NATPD|DNA-DIRECTED RNA polymerase subunit Rpo3|Natronomonas pharaonis (strain ATCC

Query: 2 DVPPLSLD 9
DVP LS+D
Sbjct: 39 DVPTLSID 46


>sp|Y043_METJA|UNCHARACTERIZED protein MJ0043|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RDVPPLSLDR 10
RD+ LSLD+
Sbjct: 257 RDIKYLSLDK 266


>sp|RPO3_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo3|Halobacterium salinarum (strain ATCC

Query: 2 DVPPLSLD 9
DVP LS+D
Sbjct: 40 DVPTLSID 47


>sp|RPO3_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo3|Halobacterium salinarum (strain ATCC

Query: 2 DVPPLSLD 9
DVP LS+D
Sbjct: 40 DVPTLSID 47


>sp|Y1151_ARCFU|UNCHARACTERIZED protein AF_1151|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 RDVPPLSLDR 10
+DV P+SL++
Sbjct: 48 KDVKPVSLEK 57


>sp|TF2B5_HALSA|TRANSCRIPTION initiation factor IIB 5|Halobacterium salinarum (strain ATCC 700922

Query: 3 VPPLSLDR 10
PP+SLD+
Sbjct: 216 TPPVSLDQ 223




123|SequenceR|620|611|NQLGLRDVPP

>sp|PPAC_METTP|MANGANESE-DEPENDENT inorganic pyrophosphatase|Methanothrix thermoacetophila (strain

Query: 1 NQLGLRDVPP 10
NQLG++DV P
Sbjct: 29 NQLGMKDVVP 38


>sp|Y240_METJA|PUTATIVE adenylate cyclase MJ0240|Methanocaldococcus jannaschii (strain ATCC

Query: 2 QLGLRDVPP 10
+LG ++VPP
Sbjct: 96 KLGFKEVPP 104


>sp|ACSA_PYRAE|ACETYL-COENZYME A synthetase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 QLGLRDVP 9
+LGL+DVP
Sbjct: 234 RLGLKDVP 241


>sp|SYK_CENSM|LYSINE--TRNA ligase|Cenarchaeum symbiosum

Query: 2 QLGLRDVP 9
+LGL DVP
Sbjct: 330 ELGLEDVP 337


>sp|ACSA_PYRAR|ACETYL-COENZYME A synthetase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 QLGLRDVP 9
+LGL+DVP
Sbjct: 234 RLGLKDVP 241


>sp|SYK_CENSY|LYSINE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 2 QLGLRDVP 9
+LGL DVP
Sbjct: 331 ELGLEDVP 338


>sp|BRIX_THEKO|PROBABLE Brix domain-containing ribosomal biogenesis|Thermococcus

Query: 2 QLGLRDVPP 10
++G R++PP
Sbjct: 92 EIGFRNIPP 100


>sp|HDRC1_METJA|COB--COM heterodisulfide reductase iron-sulfur subunit|Methanocaldococcus

Query: 2 QLGLRDVPP 10
++GL ++PP
Sbjct: 142 EIGLTEIPP 150


>sp|CDPAS_METLZ|CDP-ARCHAEOL synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 3 LGLRDVP 9
LGL+DVP
Sbjct: 169 LGLKDVP 175


>sp|SYH_KORCO|HISTIDINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 4 GLRDVPP 10
G RD PP
Sbjct: 7 GFRDFPP 13


>sp|TRUD_ARCFU|PROBABLE tRNA pseudouridine synthase D|Archaeoglobus fulgidus (strain ATCC

Query: 2 QLGLRDVP 9
+LGLR++P
Sbjct: 216 KLGLRELP 223


>sp|HDRC_METKA|COB--COM heterodisulfide reductase iron-sulfur subunit|Methanopyrus kandleri

Query: 3 LGLRDVPP 10
+GL +VPP
Sbjct: 149 IGLDEVPP 156


>sp|CDPAS_THEPD|CDP-ARCHAEOL synthase|Thermofilum pendens (strain DSM 2475

Query: 3 LGLRDVP 9
LGL+DVP
Sbjct: 197 LGLKDVP 203


>sp|Y2001_METTM|UNCHARACTERIZED protein MTBMA_p00010|Methanothermobacter marburgensis (strain ATCC

Query: 3 LGLRDVPP 10
L LRD PP
Sbjct: 180 LFLRDTPP 187


>sp|HDRC1_METMP|H(2)/FORMATE:COB-COM heterodisulfide,ferredoxin reductase subunit C1|Methanococcus

Query: 3 LGLRDVPP 10
+GL ++PP
Sbjct: 141 IGLTEIPP 148


>sp|SYS2_METM5|TYPE-2 serine--tRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 1 NQLGLRDV 8
+Q+G+RDV
Sbjct: 89 HQIGIRDV 96


>sp|SYS2_METM6|TYPE-2 serine--tRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 1 NQLGLRDV 8
+Q+G+RDV
Sbjct: 89 HQIGIRDV 96


>sp|SYS2_METMP|TYPE-2 serine--tRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 NQLGLRDV 8
+Q+G+RDV
Sbjct: 89 HQIGIRDV 96


>sp|SYS2_METVS|TYPE-2 serine--tRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 NQLGLRDV 8
+Q+G+RDV
Sbjct: 89 HQIGIRDV 96


>sp|SYS2_METM7|TYPE-2 serine--tRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 NQLGLRDV 8
+Q+G+RDV
Sbjct: 89 HQIGIRDV 96


>sp|SYH_AERPE|HISTIDINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 4 GLRDVPP 10
G RD PP
Sbjct: 11 GFRDFPP 17


>sp|MDH_PYRAE|MALATE dehydrogenase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 QLGLRDVP 9
+ G+RDVP
Sbjct: 254 EYGVRDVP 261


>sp|GATC_SULAC|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit C|Sulfolobus acidocaldarius (strain ATCC

Query: 1 NQLGLRDVPP 10
N+L L+DV P
Sbjct: 44 NELELKDVEP 53




124|SequenceR|625|616|LSFLDNQLGL

>sp|PRIS_METHJ|DNA primase small subunit PriS|Methanospirillum hungatei JF-1 (strain

Query: 1 LSFLDNQLGL 10
L LDN+LG+
Sbjct: 126 LDVLDNELGI 135


>sp|KDPB_HALSA|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Halobacterium salinarum (strain ATCC

Query: 2 SFLDNQLGL 10
SFLD +GL
Sbjct: 203 SFLDQMIGL 211


>sp|KDPB_HALS3|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Halobacterium salinarum (strain ATCC

Query: 2 SFLDNQLGL 10
SFLD +GL
Sbjct: 203 SFLDQMIGL 211


>sp|CARB_METMA|CARBAMOYL phosphate synthase large chain|Methanosarcina mazei (strain ATCC

Query: 4 LDNQLGL 10
+DNQLG+
Sbjct: 400 IDNQLGI 406


>sp|F16PA_METHJ|FRUCTOSE-1,6-BISPHOSPHATASE class 1|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 SFLDNQL 8
+FLDNQ+
Sbjct: 45 AFLDNQM 51


>sp|FRHG_METBF|COENZYME F420 hydrogenase subunit gamma|Methanosarcina barkeri (strain

Query: 1 LSFLDNQLGL 10
+S DN LGL
Sbjct: 20 VSLADNNLGL 29


>sp|RL30_METS5|LARGE ribosomal subunit protein uL30|Metallosphaera sedula (strain ATCC

Query: 2 SFLDNQLGL 10
SF++ +LGL
Sbjct: 81 SFIEKELGL 89




125|SequenceR|630|621|IGARALSFLD

>sp|PUR5_METKA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 IGARALSFLD 10
+GAR L+FLD
Sbjct: 95 LGARPLAFLD 104


>sp|PUR5_METBU|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 IGARALSFLD 10
IGA +SF+D
Sbjct: 95 IGAEPISFVD 104


>sp|EF2_IGNH4|ELONGATION factor 2|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 ARALSFLD 10
ARAL +LD
Sbjct: 55 ARALDYLD 62


>sp|HMEA_ARCFU|HDR-LIKE menaquinol oxidoreductase iron-sulfur subunit|Archaeoglobus

Query: 2 GARALSFLD 10
GAR +F+D
Sbjct: 163 GARCFNFID 171


>sp|FPRA_METTH|COENZYME F420H(2) oxidase|Methanothermobacter thermautotrophicus (strain

Query: 1 IGARALSFLD 10
+G R L+FL+
Sbjct: 138 LGGRTLTFLE 147




126|SequenceR|635|626|EVTSIIGARA

>sp|PYRK_METJA|PROBABLE dihydroorotate dehydrogenase B (NAD(+)),|Methanocaldococcus

Query: 1 EVTSIIGAR 9
E+T+I+GAR
Sbjct: 119 EITTILGAR 127


>sp|COBQ_THEKO|PROBABLE cobyric acid synthase|Thermococcus kodakarensis (strain ATCC

Query: 2 VTSIIGARA 10
+TSI GARA
Sbjct: 400 ITSINGARA 408


>sp|REG8_PYRFU|UNCHARACTERIZED HTH-type transcriptional regulator PF1734|Pyrococcus furiosus

Query: 1 EVTSIIGARA 10
E+T+IIG +A
Sbjct: 64 ELTAIIGIKA 73


>sp|RPO6_PYRAE|DNA-DIRECTED RNA polymerase subunit Rpo6|Pyrobaculum aerophilum (strain ATCC

Query: 1 EVTSIIGARA 10
E IIGARA
Sbjct: 35 ETARIIGARA 44




127|SequenceR|640|631|MVKLVEVTSI

***** No hits found ******


128|SequenceR|645|636|NVFAEMVKLV

>sp|COMB_THEVO|PROBABLE 2-phosphosulfolactate phosphatase|Thermoplasma volcanium (strain

Query: 1 NVFAEMVKL 9
N+FAEM+KL
Sbjct: 148 NIFAEMLKL 156




129|SequenceR|650|641|TYNPENVFAE

>sp|PCKA_AERPE|PHOSPHOENOLPYRUVATE carboxykinase (ATP)|Aeropyrum pernix (strain ATCC 700893

Query: 2 YNPENVFAE 10
YNPE ++ E
Sbjct: 451 YNPEELYGE 459


>sp|SYL_AERPE|LEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 TYNPENVFA 9
TY PE VF
Sbjct: 222 TYRPETVFG 230


>sp|Y510_ARCFU|UNCHARACTERIZED transporter AF_0510|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 TYNPENVFA 9
T+NPE V A
Sbjct: 206 TFNPETVAA 214


>sp|COBS_PYRFU|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 YNPENVFA 9
Y+P+++FA
Sbjct: 176 YDPQSIFA 183


>sp|NADK_METTH|NAD kinase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 NPENVFA 9
+PENVF+
Sbjct: 99 DPENVFS 105


>sp|HYD1G_PYRFU|SULFHYDROGENASE 1 subunit gamma|Pyrococcus furiosus (strain ATCC 43587

Query: 2 YNPENVFA 9
Y PEN+F
Sbjct: 238 YRPENIFV 245


>sp|FLPA_METMP|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 1 TYNPENVFAE 10
T NP +FAE
Sbjct: 186 TKNPREIFAE 195


>sp|FLPA_METM6|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 1 TYNPENVFAE 10
T NP +FAE
Sbjct: 186 TKNPREIFAE 195


>sp|FLPA_METM5|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 1 TYNPENVFAE 10
T NP +FAE
Sbjct: 186 TKNPREIFAE 195


>sp|FLPA_METM7|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanococcus maripaludis (strain

Query: 1 TYNPENVFAE 10
T NP +FAE
Sbjct: 186 TKNPREIFAE 195


>sp|SYI_METTP|ISOLEUCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 YNPENV 7
YNP+NV
Sbjct: 9 YNPKNV 14


>sp|RS15_METB6|SMALL ribosomal subunit protein uS15|Methanoregula boonei (strain DSM

Query: 1 TYNPEN 6
TY PEN
Sbjct: 140 TYKPEN 145


>sp|DNLI_METAR|DNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 TYNPENVFAE 10
T+NPE+ E
Sbjct: 73 THNPEDAVVE 82


>sp|CDC64_HALSA|ORC1-TYPE DNA replication protein 4|Halobacterium salinarum (strain ATCC

Query: 2 YNPENV 7
Y+PENV
Sbjct: 60 YSPENV 65


>sp|NRPR1_METMA|GLOBAL nitrogen regulator NrpRI|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 TYNPE 5
TYNPE
Sbjct: 100 TYNPE 104


>sp|Y436_PYRFU|KELCH domain-containing protein PF0436|Pyrococcus furiosus (strain ATCC

Query: 2 YNPEN 6
YNPEN
Sbjct: 133 YNPEN 137


>sp|CDC62_HALSA|ORC1-TYPE DNA replication protein 2|Halobacterium salinarum (strain ATCC

Query: 2 YNPENV 7
Y+PENV
Sbjct: 60 YSPENV 65


>sp|GLCDH_THEAC|GLUCOSE 1-dehydrogenase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 TYNPE 5
TYNPE
Sbjct: 55 TYNPE 59


>sp|SYV_PYRAE|VALINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 YNPENVFAE 10
YN E VF E
Sbjct: 661 YNREGVFTE 669


>sp|MCH_ARCFU|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 NPENVFA 9
+PENV+A
Sbjct: 160 DPENVYA 166


>sp|Y397_ARCFU|UNCHARACTERIZED protein AF_0397|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 TYNPENVFAE 10
T P+N F+E
Sbjct: 30 TIEPKNTFSE 39


>sp|CATA_METBF|CATALASE barkeri (strain Fusaro /

Query: 3 NPENVFAE 10
NP N FAE
Sbjct: 304 NPTNYFAE 311


>sp|SYK1_METAC|LYSINE--TRNA ligase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 TYNPE 5
TYNPE
Sbjct: 526 TYNPE 530


>sp|Y311_METM5|UPF0200 protein MmarC5_0311|Methanococcus maripaludis (strain C5 /

Query: 1 TYNPENV 7
T NPENV
Sbjct: 45 TLNPENV 51




130|SequenceR|655|646|LDSWVTYNPE

>sp|RS15_METKA|SMALL ribosomal subunit protein uS15|Methanopyrus kandleri (strain AV19

Query: 3 SWVTYNPE 10
SWV Y+PE
Sbjct: 24 SWVEYSPE 31


>sp|GCSPA_THEVO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermoplasma

Query: 1 LDSWVTYNPE 10
LDS+ Y PE
Sbjct: 85 LDSYTPYQPE 94


>sp|GCSPA_THEAC|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermoplasma

Query: 1 LDSWVTYNPE 10
LDS+ Y PE
Sbjct: 85 LDSYTPYQPE 94


>sp|YORA_PYRWO|UNCHARACTERIZED 24.7 kDa protein in|Pyrococcus woesei

Query: 3 SWVTYNP 9
SWVTY+P
Sbjct: 122 SWVTYSP 128


>sp|SYK_METTH|LYSINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 DSWVTYNP 9
D W+ YNP
Sbjct: 182 DDWLPYNP 189


>sp|RS15_PYRCJ|SMALL ribosomal subunit protein uS15|Pyrobaculum calidifontis (strain

Query: 3 SWVTYNPE 10
+W+ Y PE
Sbjct: 24 TWIQYTPE 31


>sp|RS15_PYRAR|SMALL ribosomal subunit protein uS15|Pyrobaculum arsenaticum (strain

Query: 3 SWVTYNPE 10
+W+ Y PE
Sbjct: 27 TWIQYTPE 34


>sp|RS15_PYRAE|SMALL ribosomal subunit protein uS15|Pyrobaculum aerophilum (strain

Query: 3 SWVTYNPE 10
+W+ Y PE
Sbjct: 24 TWIQYTPE 31


>sp|RS15_METJA|SMALL ribosomal subunit protein uS15|Methanocaldococcus jannaschii

Query: 4 WVTYNPE 10
WV Y PE
Sbjct: 25 WVQYTPE 31


>sp|RS15_HYPBU|SMALL ribosomal subunit protein uS15|Hyperthermus butylicus (strain DSM

Query: 4 WVTYNPE 10
W+ Y+PE
Sbjct: 24 WIQYDPE 30


>sp|RS15_CALMQ|SMALL ribosomal subunit protein uS15|Caldivirga maquilingensis (strain

Query: 4 WVTYNPE 10
W++Y+PE
Sbjct: 25 WLSYSPE 31


>sp|COXX2_CENSY|PROTOHEME IX farnesyltransferase 2|Cenarchaeum symbiosum (strain A)

Query: 1 LDSWVTYNP 9
L +WV Y P
Sbjct: 271 LSAWVVYKP 279


>sp|GLPK_THEGJ|GLYCEROL kinase|Thermococcus gammatolerans (strain DSM 15229

Query: 4 WVTYNPE 10
WV +NPE
Sbjct: 43 WVEHNPE 49


>sp|Y883_PYRHO|IRON-SULFUR cluster assembly SufBD family|Pyrococcus horikoshii (strain ATCC

Query: 2 DSWVTYNPE 10
+SWV+Y E
Sbjct: 141 NSWVSYEDE 149


>sp|NURA_SULAC|DNA double-strand break repair nuclease|Sulfolobus acidocaldarius

Query: 4 WVTYNPE 10
W+ Y+PE
Sbjct: 39 WINYSPE 45


>sp|Y055_KORCO|UPF0173 metal-dependent hydrolase Kcr_0055|Korarchaeum cryptofilum

Query: 1 LDSWVTYNPE 10
+D W+ NP+
Sbjct: 22 IDPWIEGNPQ 31


>sp|MRE11_HALSA|DNA double-strand break repair protein|Halobacterium salinarum (strain

Query: 2 DSWVTY 7
D+WVTY
Sbjct: 192 DTWVTY 197


>sp|GLPK_THEKO|GLYCEROL kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 WVTYNPE 10
WV +NPE
Sbjct: 43 WVEHNPE 49


>sp|GLPK_PYRFU|GLYCEROL kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 WVTYNPE 10
WV +NPE
Sbjct: 43 WVEHNPE 49


>sp|GLPK_HALSA|GLYCEROL kinase|Halobacterium salinarum (strain ATCC 700922

Query: 1 LDSWVTYN 8
+DSW+ YN
Sbjct: 175 IDSWLIYN 182


>sp|GLPK_HALS3|GLYCEROL kinase|Halobacterium salinarum (strain ATCC 29341

Query: 1 LDSWVTYN 8
+DSW+ YN
Sbjct: 175 IDSWLIYN 182


>sp|PPSA_AERPE|PHOSPHOENOLPYRUVATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 1 LDSWVTYNP 9
+ SW+ Y+P
Sbjct: 544 ISSWIGYHP 552


>sp|PDXS_AERPE|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Aeropyrum pernix (strain ATCC

Query: 4 WVTYNPE 10
W+ Y PE
Sbjct: 26 WLAYGPE 32


>sp|MRE11_METMA|DNA double-strand break repair protein|Methanosarcina mazei (strain

Query: 2 DSWVTYN 8
+SWVTY+
Sbjct: 200 ESWVTYS 206


>sp|RS15_PYRIL|SMALL ribosomal subunit protein uS15|Pyrobaculum islandicum (strain DSM

Query: 3 SWVTYNPE 10
+W+ Y P+
Sbjct: 24 TWIQYTPD 31


>sp|G3P_PICTO|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Picrophilus torridus (strain ATCC 700027

Query: 1 LDSWVTYN 8
++SW+ YN
Sbjct: 236 MESWLKYN 243


>sp|NRPR1_METMA|GLOBAL nitrogen regulator NrpRI|Methanosarcina mazei (strain ATCC BAA-159

Query: 6 TYNPE 10
TYNPE
Sbjct: 100 TYNPE 104


>sp|GLCDH_THEAC|GLUCOSE 1-dehydrogenase|Thermoplasma acidophilum (strain ATCC 25905

Query: 6 TYNPE 10
TYNPE
Sbjct: 55 TYNPE 59


>sp|Y1542_METJA|UNCHARACTERIZED protein MJ1542|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LDSWVTYN 8
L SW+ YN
Sbjct: 647 LRSWILYN 654


>sp|PELO_METJA|PROTEIN pelota homolog|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 DSWVTYN 8
D WV YN
Sbjct: 22 DLWVLYN 28


>sp|GLPK_HALVD|GLYCEROL kinase|Haloferax volcanii (strain ATCC 29605

Query: 1 LDSWVTYN 8
+D+W+ YN
Sbjct: 176 IDTWLIYN 183


>sp|RS15_METS3|SMALL ribosomal subunit protein uS15|Methanobrevibacter smithii (strain

Query: 4 WVTYNPE 10
WVTY+ E
Sbjct: 6 WVTYSDE 12


>sp|CPS_METS3|CARBAMOYL-PHOSPHATE synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 DSWVTYNPE 10
+ WV + PE
Sbjct: 336 NDWVVHGPE 344


>sp|Y510_ARCFU|UNCHARACTERIZED transporter AF_0510|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 VTYNPE 10
VT+NPE
Sbjct: 205 VTFNPE 210


>sp|MALE_PYRAB|MALTOTRIOSE-BINDING protein|Pyrococcus abyssi (strain GE5 /

Query: 4 WVTYNPE 10
W T NPE
Sbjct: 358 WFTTNPE 364




131|SequenceR|660|651|GLNCSLDSWV

>sp|MTMB2_METBA|MONOMETHYLAMINE methyltransferase MtmB2|Methanosarcina barkeri

Query: 1 GLNCSLDSW 9
G C+LD W
Sbjct: 19 GEKCTLDDW 27


>sp|MTMB3_METBF|MONOMETHYLAMINE methyltransferase MtmB3|Methanosarcina barkeri (strain Fusaro /

Query: 1 GLNCSLDSW 9
G C+LD W
Sbjct: 19 GEKCTLDDW 27


>sp|SYV_METKA|VALINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 LNCSLDSW 9
L CS+D W
Sbjct: 133 LGCSIDWW 140


>sp|Y1239_METJA|UNCHARACTERIZED protein MJ1239|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GLNCSLDSWV 10
+ CS D WV
Sbjct: 107 AMRCSRDIWV 116


>sp|DGGGP_METS3|DIGERANYLGERANYLGLYCERYL phosphate synthase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 LNCSLDSWV 10
++C +D+W+
Sbjct: 97 ISCLVDTWI 105


>sp|PURA_PICTO|ADENYLOSUCCINATE synthetase|Picrophilus torridus (strain ATCC 700027

Query: 2 LNCSLD 7
LNCS+D
Sbjct: 397 LNCSID 402


>sp|Y685_METJA|UNCHARACTERIZED ATP-binding protein MJ0685|Methanocaldococcus jannaschii (strain

Query: 1 GLNCSLDSWV 10
G CS+++W+
Sbjct: 106 GCYCSVNNWL 115


>sp|IORA_PYRHO|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus horikoshii (strain ATCC

Query: 1 GLNCSLDSWV 10
GLN ++DS++
Sbjct: 94 GLNVAMDSFM 103


>sp|IORA_PYRAB|INDOLEPYRUVATE oxidoreductase subunit IorA|Pyrococcus abyssi (strain GE5 /

Query: 1 GLNCSLDSWV 10
GLN ++DS++
Sbjct: 94 GLNVAMDSFM 103


>sp|DADD_METS3|5'-DEOXYADENOSINE deaminase|Methanobrevibacter smithii (strain ATCC 35061

Query: 5 SLDSWV 10
SLDSW+
Sbjct: 80 SLDSWL 85


>sp|PURQ_METJA|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Methanocaldococcus jannaschii (strain ATCC

Query: 1 GLNCSLD 7
G NC LD
Sbjct: 10 GTNCDLD 16


>sp|DPOL_THEG8|DNA polymerase|Thermococcus sp. (strain GE8)

Query: 1 GLNCSLD 7
GL+C LD
Sbjct: 1244 GLSCGLD 1250


>sp|DPOL_THEFM|DNA polymerase|Thermococcus fumicolans

Query: 1 GLNCSLD 7
GL+C LD
Sbjct: 1069 GLSCGLD 1075


>sp|Y3622_HALWD|PUTATIVE metal transport protein HQ_3622A|Haloquadratum walsbyi (strain

Query: 2 LNCSLDSWV 10
++ S+DSW+
Sbjct: 4 ISMSMDSWI 12


>sp|GLMU_METM5|BIFUNCTIONAL protein GlmU|Methanococcus maripaludis (strain C5 /

Query: 1 GLNCSLDS 8
G NC +DS
Sbjct: 383 GANCLIDS 390




132|SequenceR|665|656|LTSLIGLNCS

>sp|GLMU_METM7|BIFUNCTIONAL protein GlmU|Methanococcus maripaludis (strain C7 /

Query: 3 SLIGLNC 9
SLIG NC
Sbjct: 380 SLIGANC 386


Query: 3 SLIGLNCS 10
S+IG NC+
Sbjct: 315 SIIGANCN 322


>sp|FDHB1_METMP|F420-DEPENDENT formate dehydrogenase 1 subunit|Methanococcus maripaludis (strain

Query: 4 LIGLNC 9
+IGLNC
Sbjct: 119 MIGLNC 124


>sp|GLMU_METM5|BIFUNCTIONAL protein GlmU|Methanococcus maripaludis (strain C5 /

Query: 3 SLIGLNC 9
SLIG NC
Sbjct: 380 SLIGANC 386


Query: 3 SLIGLNCS 10
S+IG NC+
Sbjct: 315 SIIGANCN 322


>sp|FDHB_METJA|F420-DEPENDENT formate dehydrogenase subunit beta|Methanocaldococcus jannaschii

Query: 4 LIGLNC 9
+IGLNC
Sbjct: 117 MIGLNC 122


>sp|GLMU_METMP|BIFUNCTIONAL protein GlmU|Methanococcus maripaludis (strain DSM 14266

Query: 3 SLIGLNC 9
SLIG NC
Sbjct: 380 SLIGANC 386


Query: 3 SLIGLNCS 10
S+IG NC+
Sbjct: 315 SIIGANCN 322


>sp|ENO_METTH|ENOLASE thermautotrophicus (strain ATCC 29096

Query: 1 LTSLIGLNC 9
LTSL+G C
Sbjct: 295 LTSLVGDRC 303


>sp|FDHB_METFO|F420-DEPENDENT formate dehydrogenase subunit beta|Methanobacterium formicicum

Query: 4 LIGLNC 9
++GLNC
Sbjct: 124 MVGLNC 129


>sp|GLMU_METVS|BIFUNCTIONAL protein GlmU|Methanococcus vannielii (strain ATCC 35089

Query: 3 SLIGLNC 9
S+IG NC
Sbjct: 384 SIIGANC 390




133|SequenceR|670|661|DTHSLLTSLI

***** No hits found ******


134|SequenceR|675|666|IEEYFDTHSL

>sp|Y195_METB6|PUTATIVE HTH-type transcriptional regulatory protein|Methanoregula boonei

Query: 1 IEEYFDT 7
IEEYF+T
Sbjct: 174 IEEYFNT 180


>sp|MAP2_METTH|METHIONINE aminopeptidase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 IEEYFDTHSL 10
+EEYFD L
Sbjct: 244 LEEYFDAKRL 253


>sp|DNAG_PICTO|DNA primase DnaG|Picrophilus torridus (strain ATCC 700027

Query: 1 IEEYFDTHSL 10
+E+Y +TH +
Sbjct: 268 VEQYLETHGM 277


>sp|G1PDH_PYRFU|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Pyrococcus furiosus (strain ATCC 43587

Query: 1 IEEYFDTHSL 10
++E FD HS+
Sbjct: 53 LKEEFDVHSV 62


>sp|AROA_SACS2|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Saccharolobus solfataricus (strain ATCC

Query: 2 EEYFDTHSL 10
+EYF HS+
Sbjct: 250 KEYFGDHSI 258


>sp|AROA_SACI7|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Saccharolobus islandicus (strain

Query: 2 EEYFDTHSL 10
+EYF HS+
Sbjct: 250 KEYFGDHSI 258


>sp|AROA_SACI2|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Saccharolobus islandicus (strain L.S.2.15

Query: 2 EEYFDTHSL 10
+EYF HS+
Sbjct: 250 KEYFGDHSI 258


>sp|AROA_SACI1|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Saccharolobus islandicus (strain

Query: 2 EEYFDTHSL 10
+EYF HS+
Sbjct: 250 KEYFGDHSI 258


>sp|AROA_SACI6|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 EEYFDTHSL 10
+EYF HS+
Sbjct: 250 KEYFGDHSI 258


>sp|AROA_SACI4|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Saccharolobus islandicus (strain M.14.25

Query: 2 EEYFDTHSL 10
+EYF HS+
Sbjct: 250 KEYFGDHSI 258


>sp|AROA_SACI3|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Saccharolobus islandicus (strain M.16.27)

Query: 2 EEYFDTHSL 10
+EYF HS+
Sbjct: 250 KEYFGDHSI 258


>sp|HEM1_METMP|GLUTAMYL-TRNA reductase|Methanococcus maripaludis (strain DSM 14266

Query: 1 IEEYFDT 7
IE YFDT
Sbjct: 42 IEAYFDT 48


>sp|DEOC_METAR|DEOXYRIBOSE-PHOSPHATE aldolase|Methanocella arvoryzae (strain DSM 22066

Query: 1 IEEYFDTHS 9
+ EY D H+
Sbjct: 49 VREYLDAHN 57


>sp|HEM1_METM5|GLUTAMYL-TRNA reductase|Methanococcus maripaludis (strain C5 /

Query: 1 IEEYFDT 7
IE YFDT
Sbjct: 42 IEAYFDT 48


>sp|HEM1_METM6|GLUTAMYL-TRNA reductase|Methanococcus maripaludis (strain C6 /

Query: 1 IEEYFDT 7
IE YFDT
Sbjct: 42 IEAYFDT 48


>sp|GUAAB_THEVO|GMP synthase [glutamine-hydrolyzing] subunit B|Thermoplasma volcanium

Query: 1 IEEYFDTHSL 10
++++F+ HS+
Sbjct: 65 VKDFFEKHSM 74


>sp|TRPB1_SULTO|TRYPTOPHAN synthase beta chain 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 IEEYFDT 7
+EEY DT
Sbjct: 83 LEEYLDT 89


>sp|HEM1_METM7|GLUTAMYL-TRNA reductase|Methanococcus maripaludis (strain C7 /

Query: 1 IEEYFDT 7
IE YFDT
Sbjct: 42 IEAYFDT 48


>sp|QOX2_SULAC|QUINOL oxidase subunit 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 EYFDTH 8
+YFD+H
Sbjct: 57 QYFDSH 62


>sp|TRM1_PYRFU|TRNA (guanine(26)-N(2))-dimethyltransferase|Pyrococcus furiosus (strain

Query: 1 IEEYFDTHSL 10
I ++DTH+L
Sbjct: 321 IPLFYDTHAL 330




135|SequenceR|680|671|KVFEQIEEYF

>sp|RPO1N_THECE|DNA-DIRECTED RNA polymerase subunit Rpo1N|Thermococcus celer

Query: 4 EQIEEYF 10
E+IEEYF
Sbjct: 111 EEIEEYF 117


>sp|TRPB2_METMA|TRYPTOPHAN synthase beta chain 2|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 KVFEQIEEY 9
K EQ+EEY
Sbjct: 257 KQLEQVEEY 265


>sp|Y179_ARCFU|UNCHARACTERIZED protein AF_0179|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KVFEQIEEYF 10
K+FE+ EE++
Sbjct: 70 KLFERFEEFY 79


>sp|FAU1_PYRAE|PROBABLE ribonuclease FAU-1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 FEQIEEYF 10
FE+ +EYF
Sbjct: 410 FEKYKEYF 417


>sp|Y1407_ARCFU|UNCHARACTERIZED protein AF_1407|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KVFEQIEEYF 10
K+F + E+YF
Sbjct: 79 KIFSEAEQYF 88


>sp|OGT_METJA|METHYLATED-DNA--PROTEIN-CYSTEINE methyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 5 QIEEYF 10
QIEEYF
Sbjct: 4 QIEEYF 9


>sp|PDXS_SACI7|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus

Query: 3 FEQIEEYF 10
F QIE++F
Sbjct: 8 FAQIEDFF 15


>sp|PDXS_SACI6|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus

Query: 3 FEQIEEYF 10
F QIE++F
Sbjct: 8 FAQIEDFF 15


>sp|PDXS_SACI4|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus

Query: 3 FEQIEEYF 10
F QIE++F
Sbjct: 8 FAQIEDFF 15


>sp|PDXS_SACI3|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus

Query: 3 FEQIEEYF 10
F QIE++F
Sbjct: 8 FAQIEDFF 15


>sp|PDXS_SACI2|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus

Query: 3 FEQIEEYF 10
F QIE++F
Sbjct: 8 FAQIEDFF 15


>sp|PDXS_SACI1|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Saccharolobus islandicus

Query: 3 FEQIEEYF 10
F QIE++F
Sbjct: 8 FAQIEDFF 15


>sp|DAPAL_PYRHO|UNCHARACTERIZED DapA-like lyase PH0847|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 KVFEQIEEYF 10
KVF +++YF
Sbjct: 181 KVFTGLDQYF 190


>sp|Y666_METJA|PUTATIVE molybdopterin biosynthesis protein MJ0666|Methanocaldococcus

Query: 2 VFEQIEEYF 10
VFE++ EY
Sbjct: 17 VFEKLSEYL 25




136|SequenceR|685|676|PSFVDKVFEQ

>sp|Y245_SULTO|UPF0210 protein STK_02450|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 FVDKVFE 9
FVD++FE
Sbjct: 165 FVDRIFE 171


>sp|KAE1_ARCFU|TRNA N6-adenosine threonylcarbamoyltransferase|Archaeoglobus fulgidus

Query: 1 PSFVDKVFEQ 10
PS + +VFE+
Sbjct: 52 PSLLSRVFEK 61


>sp|RTCB_ARCFU|TRNA-SPLICING ligase RtcB|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 FVDKVFEQ 10
+VDKVF++
Sbjct: 211 YVDKVFDE 218


>sp|VHCD_METVO|F420-NON-REDUCING hydrogenase vhc iron-sulfur subunit|Methanococcus voltae

Query: 1 PSFVDKVFEQ 10
PSF+ K F++
Sbjct: 49 PSFILKAFKE 58


>sp|HELS_METBF|ATP-DEPENDENT DNA helicase Hel308|Methanosarcina barkeri (strain Fusaro /

Query: 1 PSFVDKVFEQ 10
P D++F+Q
Sbjct: 690 PKIADRIFKQ 699


>sp|DPOL1_SACS2|DNA polymerase 1|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PSFVDKVFEQ 10
P FV KVF +
Sbjct: 724 PEFVKKVFNE 733


>sp|MVK_ARCFU|MEVALONATE kinase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PSFVDKVFE 9
P VDK+F+
Sbjct: 186 PEVVDKIFD 194




137|SequenceR|690|681|LREGIPSFVD

>sp|TRUA_METJA|TRNA pseudouridine synthase A|Methanocaldococcus jannaschii (strain ATCC

Query: 2 REGIPSF 8
REG+P+F
Sbjct: 201 REGVPTF 207


>sp|LEUC_SACS2|3-ISOPROPYLMALATE dehydratase large subunit|Saccharolobus solfataricus (strain ATCC

Query: 3 EGIPSFVD 10
EGIP+F D
Sbjct: 90 EGIPNFYD 97


>sp|TRPC_THEKO|INDOLE-3-GLYCEROL phosphate synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 LREGIPSFVD 10
L+E +P FVD
Sbjct: 109 LKEELPEFVD 118


>sp|SYFA_THEAC|PHENYLALANINE--TRNA ligase alpha subunit|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 LREGIPSFV 9
LREG+P V
Sbjct: 76 LREGLPELV 84


>sp|Y123_PYRFU|UPF0146 protein PF0123|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LREGIPSFVD 10
++E IP FVD
Sbjct: 54 IKERIPGFVD 63


>sp|Y2337_ARCFU|UNCHARACTERIZED protein AF_2337|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LREGIPSFVD 10
+RE P FVD
Sbjct: 14 IREDFPYFVD 23


>sp|FTHS_THEVO|FORMATE--TETRAHYDROFOLATE ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 EGIPSFV 9
EG+P+FV
Sbjct: 247 EGVPAFV 253


>sp|FTHS_THEAC|FORMATE--TETRAHYDROFOLATE ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 EGIPSFV 9
EG+P+FV
Sbjct: 247 EGVPAFV 253


>sp|THIE_THEVO|THIAMINE-PHOSPHATE synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 4 GIPSFVD 10
GIP FVD
Sbjct: 63 GIPFFVD 69


>sp|MTAD_PYRFU|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 REGIPSFVD 10
R G+ +FVD
Sbjct: 108 RSGVTTFVD 116


>sp|PGMI_THEVO|BIFUNCTIONAL phosphoglucose/phosphomannose isomerase|Thermoplasma volcanium

Query: 5 IPSFVD 10
IPSFVD
Sbjct: 60 IPSFVD 65


>sp|KAE1B_NATPD|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 LREGIPSFVD 10
+RE +PS V+
Sbjct: 49 MREAVPSVVE 58


>sp|PTH_METKA|PEPTIDYL-TRNA hydrolase|Methanopyrus kandleri (strain AV19 /

Query: 2 REGIPSFV 9
R G+PSF+
Sbjct: 71 RRGLPSFL 78


>sp|HEM3_PICTO|PROBABLE porphobilinogen deaminase|Picrophilus torridus (strain ATCC

Query: 5 IPSFVD 10
IPSF+D
Sbjct: 80 IPSFID 85


>sp|GUAAB_PYRFU|GMP synthase [glutamine-hydrolyzing] subunit B|Pyrococcus furiosus

Query: 1 LREGIPSFV 9
LR+G P FV
Sbjct: 63 LRKGEPEFV 71


>sp|RPA_METTH|REPLICATION factor A|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 EGIPSF 8
EG+PSF
Sbjct: 631 EGLPSF 636


>sp|GUAAB_PYRAB|GMP synthase [glutamine-hydrolyzing] subunit B|Pyrococcus abyssi

Query: 1 LREGIPSFV 9
LR+G P FV
Sbjct: 58 LRKGEPEFV 66


>sp|GUAAB_PYRHO|GMP synthase [glutamine-hydrolyzing] subunit B|Pyrococcus horikoshii

Query: 1 LREGIPSFV 9
LR+G P FV
Sbjct: 58 LRKGEPEFV 66


>sp|ASSY_METJA|ARGININOSUCCINATE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LREGIPSFVD 10
LRE + +F+D
Sbjct: 317 LREDLDAFID 326




138|SequenceR|695|686|KPDWGLREGI

>sp|RL5_HALSA|LARGE ribosomal subunit protein uL5|Halobacterium salinarum (strain

Query: 1 KPDWGLREG 9
+P++GLR+G
Sbjct: 57 EPEFGLRQG 65


>sp|RL5_HALS3|LARGE ribosomal subunit protein uL5|Halobacterium salinarum (strain

Query: 1 KPDWGLREG 9
+P++GLR+G
Sbjct: 57 EPEFGLRQG 65


>sp|DNLJ_HALMA|DNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 2 PDWGLR 7
P+WGLR
Sbjct: 268 PEWGLR 273


>sp|RL5_NITMS|LARGE ribosomal subunit protein uL5|Nitrosopumilus maritimus (strain

Query: 3 DWGLREG 9
DWG+R+G
Sbjct: 56 DWGVRKG 62


>sp|Y1607_METJA|UNCHARACTERIZED glycosyltransferase MJ1607|Methanocaldococcus jannaschii (strain

Query: 3 DWGLREGI 10
DWG RE I
Sbjct: 349 DWGFREYI 356


>sp|NCPP_PYRAR|PROBABLE inosine/xanthosine triphosphatase|Pyrobaculum arsenaticum (strain

Query: 1 KPDWGLREGI 10
KP G REGI
Sbjct: 132 KPSVGYREGI 141


>sp|SYP_SACI4|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 3 DWGLREG 9
DW LREG
Sbjct: 17 DWVLREG 23


>sp|SYP_SACI3|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 3 DWGLREG 9
DW LREG
Sbjct: 17 DWVLREG 23


>sp|KADA_METMJ|ADENYLATE kinase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 PDWGLRE 8
P+W LRE
Sbjct: 106 PEWVLRE 112


>sp|SYP_SACI6|PROLINE--TRNA ligase|Saccharolobus islandicus (strain M.16.4 /

Query: 3 DWGLREG 9
DW LREG
Sbjct: 17 DWVLREG 23


>sp|SYP_SACI7|PROLINE--TRNA ligase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 3 DWGLREG 9
DW LREG
Sbjct: 17 DWVLREG 23


>sp|SYP_SACI2|PROLINE--TRNA ligase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 3 DWGLREG 9
DW LREG
Sbjct: 17 DWVLREG 23


>sp|SYP_SACI1|PROLINE--TRNA ligase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 3 DWGLREG 9
DW LREG
Sbjct: 17 DWVLREG 23


>sp|KADA_THEAC|ADENYLATE kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 PDWGLRE 8
P+W LRE
Sbjct: 95 PEWVLRE 101


>sp|NADB_PYRHO|L-ASPARTATE oxidase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 KPDWGLREGI 10
+ +W LREG+
Sbjct: 400 RDEWSLREGL 409


>sp|GUAAB_PICTO|GMP synthase [glutamine-hydrolyzing] subunit B|Picrophilus torridus

Query: 1 KPDWGLREGI 10
+PDW + E I
Sbjct: 267 RPDWSVLENI 276


>sp|SYP_SACS2|PROLINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 DWGLREG 9
DW LREG
Sbjct: 17 DWVLREG 23


>sp|IF2P_METTH|PROBABLE translation initiation factor IF-2|Methanothermobacter

Query: 2 PDWGLR 7
PDWG++
Sbjct: 586 PDWGMK 591


>sp|DABA_HALWD|PROBABLE inorganic carbon transporter subunit|Haloquadratum walsbyi (strain

Query: 1 KPDWGL 6
+P+WGL
Sbjct: 732 RPEWGL 737


>sp|Y887_METTH|UPF0104 membrane protein MTH_887|Methanothermobacter thermautotrophicus

Query: 5 GLREGI 10
GLREGI
Sbjct: 299 GLREGI 304


>sp|Y018_METJA|UNCHARACTERIZED protein MJ0018|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PDWG 5
PDWG
Sbjct: 451 PDWG 454


>sp|DABA_HALMA|PROBABLE inorganic carbon transporter subunit|Haloarcula marismortui (strain

Query: 1 KPDWGL 6
+P+WGL
Sbjct: 608 RPEWGL 613


>sp|GALE_METJA|PUTATIVE UDP-glucose 4-epimerase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 KPDWGLREGI 10
KP+ L+EGI
Sbjct: 283 KPEIDLKEGI 292


>sp|SEPS_METTP|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 KPDWGLR 7
+PDW L+
Sbjct: 355 QPDWSLK 361


>sp|MTRE_METJA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit E|Methanocaldococcus jannaschii (strain

Query: 1 KPDWGLREGI 10
K ++GLR G+
Sbjct: 213 KAEYGLRNGM 222


>sp|GLGB_PICTO|1,4-ALPHA-GLUCAN branching enzyme GlgB|Picrophilus torridus (strain ATCC 700027

Query: 2 PDWG 5
PDWG
Sbjct: 356 PDWG 359


>sp|DCD_PYRAB|DCTP deaminase|Pyrococcus abyssi (strain GE5 /

Query: 2 PDWGLREGI 10
PDW +R+ I
Sbjct: 4 PDWKIRKEI 12


>sp|HMGCS_METTP|HYDROXYMETHYLGLUTARYL-COA synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 PDWGLREGI 10
PD+ REGI
Sbjct: 183 PDFWRREGI 191


>sp|AROA_METTH|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanothermobacter thermautotrophicus

Query: 5 GLREGI 10
GLREGI
Sbjct: 385 GLREGI 390


>sp|SYW_METTH|TRYPTOPHAN--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 KPDWGLREGI 10
+P W +R GI
Sbjct: 33 EPSWLMRRGI 42


>sp|DABA_NATPD|PROBABLE inorganic carbon transporter subunit|Natronomonas pharaonis (strain

Query: 1 KPDWGL 6
+P+WGL
Sbjct: 607 RPEWGL 612


>sp|DCD_PYRHO|DCTP deaminase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 PDWGLREGI 10
PDW +R+ I
Sbjct: 4 PDWKIRKEI 12


>sp|DCD_PYRFU|DCTP deaminase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 PDWGLREGI 10
PDW +R+ I
Sbjct: 4 PDWKIRKEI 12


>sp|Y053_NANEQ|UNCHARACTERIZED RNA methyltransferase NEQ053|Nanoarchaeum equitans (strain Kin4-M)

Query: 4 WGLREGI 10
WG+RE +
Sbjct: 242 WGIREDL 248


>sp|DCD_THEKO|DCTP deaminase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 PDWGLREGI 10
PDW +R+ I
Sbjct: 4 PDWKIRKEI 12


>sp|GUAAB_THEAC|GMP synthase [glutamine-hydrolyzing] subunit B|Thermoplasma acidophilum

Query: 1 KPDWGLREGI 10
KP W L E I
Sbjct: 272 KPSWDLLEDI 281


>sp|GUAAB_THEVO|GMP synthase [glutamine-hydrolyzing] subunit B|Thermoplasma volcanium

Query: 1 KPDWGLREGI 10
KP W L E I
Sbjct: 272 KPSWDLLEDI 281




139|SequenceR|700|691|HGEGPKPDWG

>sp|RS24_METTP|SMALL ribosomal subunit protein eS24|Methanothrix thermoacetophila

Query: 1 HGEGPKP 7
HGEGP P
Sbjct: 25 HGEGPTP 31


>sp|COFC_HALMD|2-PHOSPHO-L-LACTATE guanylyltransferase|Halomicrobium mukohataei (strain ATCC 700874

Query: 1 HGEGPKPDW 9
HGEG DW
Sbjct: 175 HGEGRAADW 183


>sp|LIPA_METAR|LIPOYL synthase|Methanocella arvoryzae (strain DSM 22066

Query: 5 PKPDW 9
PKPDW
Sbjct: 7 PKPDW 11


>sp|TYW2_PYRHO|TRNA(PHE) (4-demethylwyosine(37)-C(7))

Query: 1 HGEGPKPDW 9
HGE KPD+
Sbjct: 72 HGETRKPDY 80


>sp|Y620_METKA|UPF0425 pyridoxal phosphate-dependent protein MK0620|Methanopyrus kandleri

Query: 1 HGEGPKPDWG 10
HG+ P P +G
Sbjct: 187 HGQKPGPRYG 196


>sp|COFC_NATPD|2-PHOSPHO-L-LACTATE guanylyltransferase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 HGEGPKPDW 9
HG+G DW
Sbjct: 172 HGDGRSADW 180


>sp|CISY_PYRFU|CITRATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 HGEGPKPDW 9
HGE P +W
Sbjct: 167 HGEEPPKEW 175


>sp|AGLB_METJA|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HGEGPKPDW 9
H E P PD+
Sbjct: 741 HPEHPNPDY 749


>sp|OTC_PYRCJ|ORNITHINE carbamoyltransferase|Pyrobaculum calidifontis (strain DSM 21063

Query: 4 GPKPDW 9
GPKP W
Sbjct: 182 GPKPLW 187


>sp|NIFH2_METTL|NITROGENASE iron protein 2|Methanothermococcus thermolithotrophicus

Query: 4 GPKPDWG 10
GPKP +G
Sbjct: 99 GPKPGYG 105


>sp|Y329_METJA|UNCHARACTERIZED protein MJ0329|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 PKPDW 9
P PDW
Sbjct: 320 PDPDW 324


>sp|COFC_HALVD|2-PHOSPHO-L-LACTATE guanylyltransferase|Haloferax volcanii (strain ATCC 29605

Query: 1 HGEGPKPDW 9
HGEG +W
Sbjct: 176 HGEGRAREW 184


>sp|METXA_METPE|HOMOSERINE O-acetyltransferase|Methanosphaerula palustris (strain ATCC

Query: 1 HGEGPKPDW 9
HG+ +P W
Sbjct: 65 HGDESRPGW 73


>sp|Y034_METJA|IRON-SULFUR cluster assembly SufBD family|Methanocaldococcus jannaschii

Query: 1 HGEGPK 6
HG+GP+
Sbjct: 26 HGKGPR 31


>sp|CHEB_METMP|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Methanococcus

Query: 1 HGEGPKPD 8
HGE KPD
Sbjct: 234 HGEIVKPD 241


>sp|COFC_METAC|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 HGEGPKPDW 9
HG+GP ++
Sbjct: 181 HGKGPAKEY 189


>sp|AMPPA_NATPD|AMP phosphorylase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 GEGPKP 7
GEGP+P
Sbjct: 341 GEGPEP 346


>sp|SEPS_METBF|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 HGEGPKP 7
HGE P P
Sbjct: 395 HGEEPSP 401


>sp|SEPS_METAC|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 HGEGPKP 7
HGE P P
Sbjct: 395 HGEEPSP 401


>sp|SEPS_METMA|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 HGEGPKP 7
HGE P P
Sbjct: 395 HGEEPSP 401


>sp|PURA_METTP|ADENYLOSUCCINATE synthetase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 GEGPKP 7
GEGP P
Sbjct: 270 GEGPMP 275


>sp|NEP1_STAMF|RIBOSOMAL RNA small subunit methyltransferase|Staphylothermus marinus (strain

Query: 1 HGEGPKPD 8
HGE KP+
Sbjct: 161 HGEKEKPE 168


>sp|GUAAA_IGNH4|GMP synthase [glutamine-hydrolyzing] subunit A|Ignicoccus hospitalis

Query: 2 GEGPKPDWG 10
G PKP++G
Sbjct: 94 GPSPKPEYG 102




140|SequenceR|705|696|LLADLHGEGP

>sp|DPO4_HALSA|DNA polymerase IV|Halobacterium salinarum (strain ATCC 700922

Query: 2 LADLHGEGP 10
+ADLHG GP
Sbjct: 204 VADLHGVGP 212


>sp|DPO4_HALS3|DNA polymerase IV|Halobacterium salinarum (strain ATCC 29341

Query: 2 LADLHGEGP 10
+ADLHG GP
Sbjct: 204 VADLHGVGP 212


>sp|RS24_METTP|SMALL ribosomal subunit protein eS24|Methanothrix thermoacetophila

Query: 1 LLADLHGEGP 10
+L +HGEGP
Sbjct: 20 VLKVIHGEGP 29


>sp|TRM1_AERPE|TRNA (guanine(26)-N(2))-dimethyltransferase|Aeropyrum pernix (strain

Query: 1 LLADLHGEGP 10
LL LHGE P
Sbjct: 330 LLNTLHGEAP 339


>sp|RF1_PICTO|PEPTIDE chain release factor subunit|Picrophilus torridus (strain ATCC

Query: 2 LADLHGEG 9
L DLHG G
Sbjct: 18 LKDLHGRG 25


>sp|SYR_METHJ|ARGININE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 ADLHGEG 9
AD+H EG
Sbjct: 173 ADIHAEG 179


>sp|DNLI_NANEQ|DNA ligase|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 LADLHGEG 9
+AD+ GEG
Sbjct: 122 IADIEGEG 129


>sp|RADA_CENSY|DNA repair and recombination protein|Cenarchaeum symbiosum (strain A)

Query: 2 LADLHGEGP 10
L+DL G GP
Sbjct: 8 LSDLEGVGP 16


>sp|SYY_METMP|TYROSINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 LLADLHG 7
LLADLH
Sbjct: 73 LLADLHA 79


>sp|Y2021_HALSA|PUTATIVE heme-binding protein VNG_2021C|Halobacterium salinarum (strain ATCC

Query: 3 ADLHGEG 9
AD HGEG
Sbjct: 264 ADAHGEG 270


>sp|SYY_METJA|TYROSINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LLADLHG 7
LLADLH
Sbjct: 65 LLADLHA 71


>sp|RL32_HALSA|LARGE ribosomal subunit protein eL32|Halobacterium salinarum (strain

Query: 2 LADLHGEGP 10
LAD+ G GP
Sbjct: 11 LADISGVGP 19


>sp|SYY_METVS|TYROSINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 LLADLHG 7
LLADLH
Sbjct: 74 LLADLHA 80


>sp|SYY_METHJ|TYROSINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 LLADLHG 7
LLADLH
Sbjct: 65 LLADLHA 71


>sp|SYY_METKA|TYROSINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 LLADLHG 7
LLADLH
Sbjct: 69 LLADLHA 75


>sp|MUTS2_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 1 LLADLHG 7
LLADLH
Sbjct: 417 LLADLHA 423


>sp|RS27_NATPD|SMALL ribosomal subunit protein eS27|Natronomonas pharaonis (strain

Query: 3 ADLHGE 8
ADLHG+
Sbjct: 44 ADLHGD 49




141|SequenceR|710|701|LVLGRLLADL

>sp|CARB_METLZ|CARBAMOYL phosphate synthase large chain|Methanocorpusculum labreanum (strain

Query: 1 LVLGRLLADL 10
L+LG+ LADL
Sbjct: 850 LMLGKKLADL 859


>sp|RS5_ARCFU|SMALL ribosomal subunit protein uS5|Archaeoglobus fulgidus (strain ATCC

Query: 3 LGRLLAD 9
LGRL+AD
Sbjct: 11 LGRLVAD 17


>sp|PUS10_HALLT|TRNA pseudouridine synthase Pus10|Halorubrum lacusprofundi (strain

Query: 3 LGRLLAD 9
LGRL+AD
Sbjct: 21 LGRLVAD 27


>sp|HELS_PYRCJ|ATP-DEPENDENT DNA helicase Hel308|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 VLGRLLADL 10
++GR LADL
Sbjct: 291 IIGRELADL 299




142|SequenceR|715|706|KGLKGLVLGR

>sp|THI4_ARCFU|THIAMINE thiazole synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KGLKGLVLGR 10
KGLK LVL R
Sbjct: 52 KGLKTLVLER 61


>sp|GATD_THEPD|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Thermofilum pendens (strain DSM 2475

Query: 1 KGLKGLVL 8
KG KGLV+
Sbjct: 337 KGFKGLVI 344


>sp|YA00_PYRHO|PUTATIVE transport protein PH1000|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GLKGLVLG 9
GLKGL++G
Sbjct: 324 GLKGLIIG 331


>sp|NDK_ARCFU|NUCLEOSIDE diphosphate kinase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KGLKGLVLGR 10
+GL G V+GR
Sbjct: 15 RGLVGEVIGR 24


>sp|RS3_THEPD|SMALL ribosomal subunit protein uS3|Thermofilum pendens (strain DSM

Query: 2 GLKGLVLGR 10
G+ GLV+GR
Sbjct: 50 GVPGLVIGR 58


>sp|COPB_ARCFU|COPPER-EXPORTING P-type ATPase B|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KGLKGLVLGR 10
KG++G+V GR
Sbjct: 456 KGVEGIVNGR 465


>sp|METE_METTM|METHIONINE synthase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 1 KGLKGLVLG 9
KG+KG++ G
Sbjct: 113 KGVKGIITG 121


>sp|DP2L_METHJ|DNA polymerase II large subunit|Methanospirillum hungatei JF-1 (strain

Query: 1 KGLKGLV 7
KG+KGLV
Sbjct: 705 KGVKGLV 711


>sp|RL13_METMA|LARGE ribosomal subunit protein uL13|Methanosarcina mazei (strain ATCC

Query: 4 KGLVLGR 10
KGL+LGR
Sbjct: 7 KGLILGR 13


>sp|RL13_METAC|LARGE ribosomal subunit protein uL13|Methanosarcina acetivorans (strain

Query: 4 KGLVLGR 10
KGL+LGR
Sbjct: 10 KGLILGR 16


>sp|DP2L_METST|DNA polymerase II large subunit|Methanosphaera stadtmanae (strain ATCC

Query: 1 KGLKGLV 7
KG+KGL+
Sbjct: 700 KGVKGLI 706


>sp|DHAS_ARCFU|ASPARTATE-SEMIALDEHYDE dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KGLKGLVLG 9
+GLK +VLG
Sbjct: 311 RGLKYIVLG 319




143|SequenceR|720|711|AKHGAKGLKG

>sp|PURP_PYRFU|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 HGAKGLKG 10
HGAKG KG
Sbjct: 134 HGAKGGKG 141


>sp|PURP_METTP|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanothrix thermoacetophila (strain

Query: 3 HGAKGLKG 10
HGAKG KG
Sbjct: 157 HGAKGGKG 164


>sp|PURP_KORCO|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Korarchaeum cryptofilum (strain OPF8)

Query: 3 HGAKGLKG 10
HGAKG KG
Sbjct: 160 HGAKGGKG 167


>sp|PURP_PYRHO|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrococcus horikoshii (strain ATCC

Query: 3 HGAKGLKG 10
HGAKG +G
Sbjct: 133 HGAKGGRG 140


>sp|PURP_PYRAB|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Pyrococcus abyssi (strain GE5 /

Query: 3 HGAKGLKG 10
HGAKG +G
Sbjct: 137 HGAKGGRG 144


>sp|PURP_METBU|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanococcoides burtonii (strain DSM

Query: 3 HGAKGLKG 10
HGAKG +G
Sbjct: 156 HGAKGGRG 163


>sp|RPO2_THEAC|DNA-DIRECTED RNA polymerase subunit Rpo2|Thermoplasma acidophilum (strain ATCC

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 954 SRHGQKGVVG 963


>sp|RPO2C_METTW|DNA-DIRECTED RNA polymerase subunit Rpo2C|Methanothermobacter thermautotrophicus

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 366 SRHGQKGVVG 375


>sp|RPO2_SACS2|DNA-DIRECTED RNA polymerase subunit Rpo2|Saccharolobus solfataricus (strain ATCC

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 880 SRHGQKGVIG 889


>sp|RPO2_SACSH|DNA-DIRECTED RNA polymerase subunit Rpo2|Saccharolobus shibatae (strain ATCC

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 880 SRHGQKGVIG 889


>sp|RPO2C_METTH|DNA-DIRECTED RNA polymerase subunit Rpo2C|Methanothermobacter thermautotrophicus

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 365 SRHGQKGVVG 374


>sp|SURE_METM7|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain C7 /

Query: 1 AKHGAKGL 8
A HGAK L
Sbjct: 121 AHHGAKAL 128


>sp|SURE_METM6|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain C6 /

Query: 1 AKHGAKGL 8
A HGAK L
Sbjct: 121 AHHGAKAL 128


>sp|SURE_METM5|5'-NUCLEOTIDASE SurE|Methanococcus maripaludis (strain C5 /

Query: 1 AKHGAKGL 8
A HGAK L
Sbjct: 121 AHHGAKAL 128


>sp|RPO2_THECE|DNA-DIRECTED RNA polymerase subunit Rpo2|Thermococcus celer

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 883 SRHGQKGVIG 892


>sp|RPO2_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo2|Sulfolobus acidocaldarius (strain ATCC

Query: 2 KHGAKGLKG 10
+HG KG+ G
Sbjct: 879 RHGQKGVVG 887


>sp|HELS_METBF|ATP-DEPENDENT DNA helicase Hel308|Methanosarcina barkeri (strain Fusaro /

Query: 5 AKGLKG 10
AKGLKG
Sbjct: 508 AKGLKG 513


>sp|RPO2C_METJA|DNA-DIRECTED RNA polymerase subunit Rpo2C|Methanocaldococcus jannaschii (strain

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 370 SRHGQKGVMG 379


>sp|RPO2C_ARCFU|DNA-DIRECTED RNA polymerase subunit Rpo2C|Archaeoglobus fulgidus (strain ATCC

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 365 SRHGQKGVVG 374


>sp|Y957_METJA|UNCHARACTERIZED protein MJ0957|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KHGAKGLKG 10
++GA G+KG
Sbjct: 338 RNGAYGIKG 346


>sp|RPO1C_THEGJ|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus gammatolerans (strain DSM

Query: 2 KHGAKGLKG 10
KH KGL G
Sbjct: 220 KHRLKGLSG 228


>sp|ARGB_METBU|ACETYLGLUTAMATE kinase|Methanococcoides burtonii (strain DSM 6242

Query: 1 AKHGAKGL 8
+KHG KG+
Sbjct: 119 SKHGGKGV 126


>sp|ARCH_METJA|PROTEIN archease|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KHGAKGL 8
K GAKGL
Sbjct: 25 KEGAKGL 31


>sp|RPO1C_THEON|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus onnurineus (strain NA1)

Query: 2 KHGAKGLKG 10
KH KGL G
Sbjct: 220 KHRLKGLSG 228


>sp|RPO2C_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo2C|Halobacterium salinarum (strain ATCC

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 369 SRHGQKGVVG 378


>sp|RPO2C_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo2C|Halobacterium salinarum (strain ATCC

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 369 SRHGQKGVVG 378


>sp|RPO1C_THEKO|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus kodakarensis (strain ATCC

Query: 2 KHGAKGLKG 10
KH KGL G
Sbjct: 220 KHRLKGLSG 228


>sp|RPO1C_PYRFU|DNA-DIRECTED RNA polymerase subunit Rpo1C|Pyrococcus furiosus (strain ATCC 43587

Query: 2 KHGAKGLKG 10
KH KGL G
Sbjct: 222 KHRLKGLSG 230


>sp|RPO2C_METVS|DNA-DIRECTED RNA polymerase subunit Rpo2C|Methanococcus vannielii (strain ATCC

Query: 1 AKHGAKGLKG 10
++HG KG+ G
Sbjct: 366 SRHGQKGVIG 375


>sp|RPO1C_PYRAB|DNA-DIRECTED RNA polymerase subunit Rpo1C|Pyrococcus abyssi (strain GE5 /

Query: 2 KHGAKGLKG 10
KH KGL G
Sbjct: 222 KHRLKGLSG 230


>sp|PYRG_THEON|CTP synthase|Thermococcus onnurineus (strain NA1)

Query: 2 KHGAKGLKG 10
KHG K L+G
Sbjct: 334 KHGVKLLEG 342




144|SequenceR|725|716|AEELTAKHGA

>sp|RNH2_METTH|RIBONUCLEASE HII|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 ELTAKHGA 10
E+TA+HGA
Sbjct: 126 EVTAEHGA 133


>sp|SYT_NITMS|THREONINE--TRNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 2 EELTAKHG 9
EEL KHG
Sbjct: 399 EELVKKHG 406


>sp|NIFH_METMP|NITROGENASE iron protein|Methanococcus maripaludis (strain DSM 14266

Query: 2 EELTAKHG 9
EELT+K+G
Sbjct: 265 EELTSKYG 272


>sp|NIFH_METMI|NITROGENASE iron protein|Methanococcus maripaludis (Methanococcus deltae)

Query: 2 EELTAKHG 9
EELT+K+G
Sbjct: 265 EELTSKYG 272


>sp|GLMS_METMP|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Methanococcus maripaludis (strain

Query: 1 AEELTAKH 8
AEELTAK+
Sbjct: 453 AEELTAKN 460


>sp|NIFE_METTH|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 1 AEELTAKHG 9
AEE+ +HG
Sbjct: 275 AEEMEKRHG 283


>sp|PRPB_AERPE|2-METHYLISOCITRATE lyase|Aeropyrum pernix (strain ATCC 700893

Query: 1 AEELTAKH 8
AEEL A+H
Sbjct: 295 AEELLARH 302


>sp|TRMY_PYRAE|TRNA (pseudouridine(54)-N(1))-methyltransferase|Pyrobaculum aerophilum

Query: 2 EELTAKHG 9
EEL AKH
Sbjct: 104 EELLAKHA 111


>sp|SYA_NATPD|ALANINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 EELTAKHGA 10
EE+ A HGA
Sbjct: 471 EEIAADHGA 479




145|SequenceR|730|721|KFRRRAEELT

>sp|PSTK_METKA|L-SERYL-TRNA(SEC) kinase|Methanopyrus kandleri (strain AV19 /

Query: 1 KFRRRAEEL 9
+FRRRAEE+
Sbjct: 238 EFRRRAEEV 246


>sp|DLDH_HALVD|DIHYDROLIPOYL dehydrogenase|Haloferax volcanii (strain ATCC 29605

Query: 3 RRRAEEL 9
R+RAEEL
Sbjct: 227 RKRAEEL 233


>sp|Y378_NANEQ|UPF0173 metal-dependent hydrolase NEQ378|Nanoarchaeum equitans (strain

Query: 1 KFRRRAEE 8
+F+R+AEE
Sbjct: 192 EFKRKAEE 199


>sp|Y1169_SACI6|UPF0200 protein M164_1169|Saccharolobus islandicus (strain M.16.4 /

Query: 1 KFRRRAEELT 10
+F+RR EE+T
Sbjct: 172 EFKRRCEEVT 181


>sp|Y1675_SACI1|UPF0200 protein YN1551_1675|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 KFRRRAEELT 10
+F+RR EE+T
Sbjct: 172 EFKRRCEEVT 181


>sp|Y1277_SACI2|UPF0200 protein LS215_1277|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 KFRRRAEELT 10
+F+RR EE+T
Sbjct: 172 EFKRRCEEVT 181


>sp|Y1244_SACI3|UPF0200 protein M1627_1244|Saccharolobus islandicus (strain M.16.27)

Query: 1 KFRRRAEELT 10
+F+RR EE+T
Sbjct: 172 EFKRRCEEVT 181


>sp|Y1180_SACI4|UPF0200 protein M1425_1180|Saccharolobus islandicus (strain M.14.25 /

Query: 1 KFRRRAEELT 10
+F+RR EE+T
Sbjct: 172 EFKRRCEEVT 181


>sp|Y1041_SACS2|UPF0200 protein SSO1041|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 KFRRRAEELT 10
+F+RR EE+T
Sbjct: 172 EFKRRCEEVT 181


>sp|Y1176_SACI7|UPF0200 protein YG5714_1176|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 KFRRRAEELT 10
+F+RR EE+T
Sbjct: 172 EFKRRCEEVT 181


>sp|TF2B5_HALSA|TRANSCRIPTION initiation factor IIB 5|Halobacterium salinarum (strain ATCC 700922

Query: 3 RRRAEEL 9
RRRAEEL
Sbjct: 239 RRRAEEL 245


>sp|HMGCS_ARCFU|HYDROXYMETHYLGLUTARYL-COA synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 KFRRRAEEL 9
KFR R EE+
Sbjct: 13 KFRIRVEEI 21


>sp|RS3A_THESM|SMALL ribosomal subunit protein eS1|Thermococcus sibiricus (strain DSM

Query: 2 FRRRAEELT 10
R++AEELT
Sbjct: 149 IRKKAEELT 157


>sp|THI4_SACS2|THIAMINE thiazole synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 FRRRAEELT 10
+ RAEELT
Sbjct: 203 YSERAEELT 211


>sp|SYV_METMA|VALINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 KFRRRAEELT 10
+FRR ELT
Sbjct: 110 EFRRMCRELT 119


>sp|THI4_SACI7|THIAMINE thiazole synthase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 FRRRAEELT 10
+ RAEELT
Sbjct: 203 YSERAEELT 211


>sp|THI4_SACI6|THIAMINE thiazole synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 FRRRAEELT 10
+ RAEELT
Sbjct: 203 YSERAEELT 211


>sp|THI4_SACI3|THIAMINE thiazole synthase|Saccharolobus islandicus (strain M.16.27)

Query: 2 FRRRAEELT 10
+ RAEELT
Sbjct: 203 YSERAEELT 211


>sp|THI4_SACI2|THIAMINE thiazole synthase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 FRRRAEELT 10
+ RAEELT
Sbjct: 203 YSERAEELT 211


>sp|SYV_METTP|VALINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 KFRRRAEELT 10
+FRR EE+T
Sbjct: 107 EFRRLCEEMT 116


>sp|THI4_SACI1|THIAMINE thiazole synthase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 FRRRAEELT 10
+ RAEELT
Sbjct: 203 YSERAEELT 211


>sp|THI4_SACI4|THIAMINE thiazole synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 FRRRAEELT 10
+ RAEELT
Sbjct: 203 YSERAEELT 211


>sp|CARB_METBF|CARBAMOYL phosphate synthase large chain|Methanosarcina barkeri (strain

Query: 3 RRRAEELT 10
R RAEELT
Sbjct: 465 RIRAEELT 472




146|SequenceR|735|726|GEVHDKFRRR

>sp|HIS2_METKA|PHOSPHORIBOSYL-ATP pyrophosphatase|Methanopyrus kandleri (strain AV19 /

Query: 1 GEVHDKFRRR 10
GEV D+F RR
Sbjct: 89 GEVFDEFERR 98


>sp|DAPF_METMP|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain DSM 14266

Query: 2 EVHDKFRRR 10
E+H+KF R+
Sbjct: 183 EIHEKFPRK 191


>sp|DAPF_METM6|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain C6 /

Query: 2 EVHDKFRRR 10
E+H+KF R+
Sbjct: 183 EIHEKFPRK 191


>sp|CBID_THEAC|COBALT-PRECORRIN-5B C(1)-methyltransferase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 HDKFRRR 10
HD+FRR+
Sbjct: 343 HDRFRRQ 349


>sp|GPDA_METTH|GLYCEROL-3-PHOSPHATE dehydrogenase [NAD(P)+]|Methanothermobacter thermautotrophicus

Query: 1 GEVHDKF 7
GE+HD+F
Sbjct: 227 GELHDRF 233


>sp|KORA_METJA|2-OXOGLUTARATE synthase subunit KorA|Methanocaldococcus jannaschii (strain ATCC

Query: 2 EVHDKFRRR 10
E HDK RR
Sbjct: 238 ETHDKLVRR 246


>sp|DAPF_METM5|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain C5 /

Query: 2 EVHDKFRRR 10
EVH+KF ++
Sbjct: 183 EVHEKFPKK 191


>sp|Y1008_PYRHO|UPF0200 protein PH1008|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GEVHDKFRRR 10
GEV FRRR
Sbjct: 14 GEVAKAFRRR 23


>sp|SYA_STAMF|ALANINE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 3 VHDKFRRR 10
V+DKF RR
Sbjct: 388 VYDKFHRR 395


>sp|GMS_METOI|GMGT synthase|Methanothermococcus okinawensis (strain DSM 14208

Query: 2 EVHDKFR 8
E H+KFR
Sbjct: 223 ETHEKFR 229


>sp|DAPF_METM7|DIAMINOPIMELATE epimerase|Methanococcus maripaludis (strain C7 /

Query: 2 EVHDKFRRR 10
E H+KF R+
Sbjct: 183 EFHEKFPRK 191


>sp|CDC6_THEVO|ORC1-TYPE DNA replication protein|Thermoplasma volcanium (strain ATCC 51530

Query: 1 GEVHDKFRR 9
GE+++ +RR
Sbjct: 317 GEIYENYRR 325


>sp|CDC62_THEAC|ORC1-TYPE DNA replication protein 2|Thermoplasma acidophilum (strain ATCC

Query: 1 GEVHDKFRR 9
GE+++ +RR
Sbjct: 317 GEIYENYRR 325


>sp|CH60_METBF|CHAPERONIN GroEL|Methanosarcina barkeri (strain Fusaro /

Query: 2 EVHDKF 7
E+HDKF
Sbjct: 60 ELHDKF 65


>sp|RIBL_METMJ|FAD synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 GEVHDKFR 8
G++HD FR
Sbjct: 70 GDLHDMFR 77


>sp|SYFA_SULAC|PHENYLALANINE--TRNA ligase alpha subunit|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 EVHDKFR 8
E+HD FR
Sbjct: 260 EIHDSFR 266


>sp|KATG_METB6|CATALASE-PEROXIDASE boonei (strain DSM 21154

Query: 2 EVHDKFRRR 10
+ HDK +RR
Sbjct: 356 DAHDKNKRR 364


>sp|CH60_METMA|CHAPERONIN GroEL|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 EVHDKF 7
E+HDKF
Sbjct: 60 ELHDKF 65


>sp|AHBD_METBF|ADOMET-DEPENDENT heme synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 GEVHDKFR 8
E HD FR
Sbjct: 120 AETHDNFR 127


>sp|CH60_METAC|CHAPERONIN GroEL|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 EVHDKF 7
E+HDKF
Sbjct: 60 ELHDKF 65


>sp|NIFB_METIM|FEMO cofactor biosynthesis protein NifB|Methanocaldococcus infernus

Query: 2 EVHDKFRR 9
+VHDK+ R
Sbjct: 20 KVHDKYGR 27


>sp|SYR_METAC|ARGININE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GEVHDKFRR 9
GEVHD R
Sbjct: 261 GEVHDIVER 269




147|SequenceR|740|731|SLIQKGEVHD

>sp|EF2_IGNH4|ELONGATION factor 2|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 LIQKGEVHD 10
+IQKGE+ D
Sbjct: 509 MIQKGEITD 517


>sp|RS5_HALSA|SMALL ribosomal subunit protein uS5|Halobacterium salinarum (strain

Query: 2 LIQKGEVHD 10
L+Q GEV D
Sbjct: 16 LVQDGEVED 24


>sp|AMPPA_METM7|AMP phosphorylase|Methanococcus maripaludis (strain C7 /

Query: 1 SLIQKGEV 8
+++QKGEV
Sbjct: 54 TMVQKGEV 61


>sp|SYR_METAC|ARGININE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 LIQKGEVHD 10
++ GEVHD
Sbjct: 257 FLKSGEVHD 265


>sp|AMYA_PYRHO|ALPHA-AMYLASE horikoshii (strain ATCC 700860

Query: 1 SLIQKGEV 8
SLI+KG+V
Sbjct: 71 SLIKKGQV 78


>sp|AMPPA_METVS|AMP phosphorylase|Methanococcus vannielii (strain ATCC 35089

Query: 1 SLIQKGEV 8
+++QKGEV
Sbjct: 54 TMVQKGEV 61


>sp|AMPPA_METMP|AMP phosphorylase|Methanococcus maripaludis (strain DSM 14266

Query: 1 SLIQKGEV 8
+++QKGEV
Sbjct: 54 TMVQKGEV 61


>sp|SYP_IGNH4|PROLINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 IQKGEVH 9
++KGE+H
Sbjct: 373 VKKGEIH 379


>sp|MTSB_METMA|METHYLATED-THIOL--CORRINOID protein MtsB|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 SLIQKGEVHD 10
SL+ +G++HD
Sbjct: 150 SLVIEGDLHD 159


>sp|RPIA_PYRFU|RIBOSE-5-PHOSPHATE isomerase A|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LIQKGEVHD 10
+I+KG+V D
Sbjct: 42 MIEKGKVED 50




148|SequenceR|745|736|SRLDASLIQK

>sp|SYS_PYRAE|SERINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 RLDASLIQK 10
R+DASL+ K
Sbjct: 24 RMDASLVDK 32


>sp|PYRH_AERPE|URIDYLATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 1 SRLDASLIQK 10
SRL+ASL+ K
Sbjct: 73 SRLNASLLAK 82


>sp|SYS_PYRCJ|SERINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 RLDASLIQK 10
R+DASL+ K
Sbjct: 24 RVDASLVDK 32


>sp|RS5_STAMF|SMALL ribosomal subunit protein uS5|Staphylothermus marinus (strain

Query: 2 RLDASLIQK 10
RLD ++QK
Sbjct: 59 RLDVGIVQK 67


>sp|AATB_METMJ|A-TYPE ATP synthase subunit B|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 RLDASLIQK 10
R+D LIQK
Sbjct: 442 RIDRELIQK 450


>sp|SYS_PYRIL|SERINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 RLDASLIQK 10
RLD SL+ K
Sbjct: 24 RLDTSLVDK 32


>sp|AATB1_METHJ|A-TYPE ATP synthase subunit B|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 RLDASLIQK 10
R+D LIQK
Sbjct: 442 RIDRELIQK 450




149|SequenceR|750|741|TLYVPSRLDA

>sp|COBD_METTP|PROBABLE cobalamin biosynthesis protein CobD|Methanothrix thermoacetophila

Query: 3 YVPSRLD 9
YVP+RLD
Sbjct: 207 YVPARLD 213


>sp|DNAG_IGNH4|DNA primase DnaG|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 LYVPSRLD 9
+YVPS LD
Sbjct: 65 IYVPSNLD 72


>sp|DNAG_PYRNV|DNA primase DnaG|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 LYVPSRLD 9
+Y+PS LD
Sbjct: 72 IYIPSNLD 79


>sp|DNAG_PYRCJ|DNA primase DnaG|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 LYVPSRLD 9
+Y+PS LD
Sbjct: 72 IYIPSNLD 79


>sp|DNAG_PYRIL|DNA primase DnaG|Pyrobaculum islandicum (strain DSM 4184

Query: 2 LYVPSRLD 9
+Y+PS LD
Sbjct: 72 IYIPSNLD 79


>sp|DNAG_PYRAR|DNA primase DnaG|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 LYVPSRLD 9
+Y+PS LD
Sbjct: 72 IYIPSNLD 79


>sp|DNAG_CALMQ|DNA primase DnaG|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 LYVPSRLD 9
+YVPS LD
Sbjct: 72 VYVPSNLD 79


>sp|APE2_AERPE|HOMING endonuclease I-ApeII|Aeropyrum pernix (strain ATCC 700893

Query: 1 TLYVPSRLDA 10
TLYV RL+A
Sbjct: 72 TLYVVDRLEA 81


>sp|FTTA_METJA|TRANSCRIPTION termination factor FttA|Methanocaldococcus jannaschii (strain ATCC

Query: 3 YVPSRLDA 10
YVP LDA
Sbjct: 623 YVPMNLDA 630


>sp|TOP6A_HALMA|TYPE 2 DNA topoisomerase 6|Haloarcula marismortui (strain ATCC 43049

Query: 3 YVPSRLD 9
Y+P RLD
Sbjct: 357 YLPERLD 363




150|SequenceR|755|746|GHKLVTLYVP

>sp|RF1_ARCFU|PEPTIDE chain release factor subunit|Archaeoglobus fulgidus (strain ATCC

Query: 1 GHKLVTLYVP 10
G +L+TLY+P
Sbjct: 23 GTELITLYIP 32


>sp|RF1_HALWD|PEPTIDE chain release factor subunit|Haloquadratum walsbyi (strain DSM

Query: 1 GHKLVTLYVP 10
G +LVT+Y+P
Sbjct: 31 GTQLVTIYIP 40


>sp|RF1_HALVD|PEPTIDE chain release factor subunit|Haloferax volcanii (strain ATCC

Query: 1 GHKLVTLYVP 10
G +LVT+Y+P
Sbjct: 31 GTQLVTIYIP 40


>sp|RF1_HALSA|PEPTIDE chain release factor subunit|Halobacterium salinarum (strain ATCC

Query: 1 GHKLVTLYVP 10
G +LVT+Y+P
Sbjct: 31 GTQLVTIYIP 40


>sp|RF1_HALS3|PEPTIDE chain release factor subunit|Halobacterium salinarum (strain ATCC

Query: 1 GHKLVTLYVP 10
G +LVT+Y+P
Sbjct: 31 GTQLVTIYIP 40


>sp|RF1_HALLT|PEPTIDE chain release factor subunit|Halorubrum lacusprofundi (strain

Query: 1 GHKLVTLYVP 10
G +LVT+Y+P
Sbjct: 31 GTQLVTIYIP 40


>sp|RF1_METKA|PEPTIDE chain release factor subunit|Methanopyrus kandleri (strain AV19 /

Query: 1 GHKLVTLYVP 10
G +L+T+Y+P
Sbjct: 26 GTELITIYIP 35


>sp|COBQ_META3|PROBABLE cobyric acid synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 GHKLVT 6
GHKL+T
Sbjct: 457 GHKLIT 462


>sp|SODF_ACIAM|SUPEROXIDE dismutase [Fe]|Acidianus ambivalens (Desulfurolobus ambivalens)

Query: 1 GHKLVTLY 8
GHKL +LY
Sbjct: 81 GHKLHSLY 88


>sp|RL21_AERPE|LARGE ribosomal subunit protein eL21|Aeropyrum pernix (strain ATCC

Query: 1 GHKLVTLYVP 10
G K TL+VP
Sbjct: 82 GRKRKTLFVP 91


>sp|UDGA_ARCFU|TYPE-4 uracil-DNA glycosylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 HKLVTLYVP 10
HK T YVP
Sbjct: 20 HKTKTNYVP 28


>sp|SODF_SACS2|SUPEROXIDE dismutase [Fe]|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 GHKLVTLY 8
GHKL LY
Sbjct: 81 GHKLHALY 88




151|SequenceR|760|751|LTTGDGHKLV

>sp|ICMT_METAC|PROTEIN-S-ISOPRENYLCYSTEINE O-methyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 LTTGDGHKLV 10
L DGHKLV
Sbjct: 107 LEIKDGHKLV 116


>sp|RPO2_THECE|DNA-DIRECTED RNA polymerase subunit Rpo2|Thermococcus celer

Query: 3 TGDGHKLV 10
TGDG KLV
Sbjct: 858 TGDGTKLV 865


>sp|RS3A_ARCFU|SMALL ribosomal subunit protein eS1|Archaeoglobus fulgidus (strain ATCC

Query: 1 LTTGDGHKL 9
+TT DG+KL
Sbjct: 112 VTTADGYKL 120


>sp|RS3A_THEON|SMALL ribosomal subunit protein eS1|Thermococcus onnurineus (strain NA1)

Query: 1 LTTGDGHKL 9
+TT DG+KL
Sbjct: 113 ITTKDGYKL 121


>sp|RS3A_THEKO|SMALL ribosomal subunit protein eS1|Thermococcus kodakarensis (strain

Query: 1 LTTGDGHKL 9
+TT DG+KL
Sbjct: 113 ITTKDGYKL 121


>sp|RS3A_THEGJ|SMALL ribosomal subunit protein eS1|Thermococcus gammatolerans (strain

Query: 1 LTTGDGHKL 9
+TT DG+KL
Sbjct: 113 ITTKDGYKL 121


>sp|RS3A_PYRFU|SMALL ribosomal subunit protein eS1|Pyrococcus furiosus (strain ATCC

Query: 1 LTTGDGHKL 9
+TT DG+KL
Sbjct: 109 ITTKDGYKL 117


>sp|RS3A_PYRAB|SMALL ribosomal subunit protein eS1|Pyrococcus abyssi (strain GE5 /

Query: 1 LTTGDGHKL 9
+TT DG+KL
Sbjct: 110 ITTKDGYKL 118


>sp|NADB_PYRHO|L-ASPARTATE oxidase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LTTGDGHKLV 10
L TGDG + V
Sbjct: 236 LVTGDGERFV 245


>sp|Y1470_META3|UNCHARACTERIZED solute-binding protein Maeo_1470|Methanococcus aeolicus (strain

Query: 1 LTTGDG 6
LTTGDG
Sbjct: 277 LTTGDG 282


>sp|RS3A_THESM|SMALL ribosomal subunit protein eS1|Thermococcus sibiricus (strain DSM

Query: 1 LTTGDGHKL 9
+TT DG+KL
Sbjct: 113 VTTKDGYKL 121


>sp|SPEE_SULAC|POLYAMINE aminopropyltransferase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 LTTGDGHKLV 10
L GDG+K V
Sbjct: 136 LIIGDGYKFV 145


>sp|Y1318_METJA|UNCHARACTERIZED protein MJ1318|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LTTGDGH 7
+T GDGH
Sbjct: 52 VTKGDGH 58


>sp|NADB_PYRAB|L-ASPARTATE oxidase|Pyrococcus abyssi (strain GE5 /

Query: 1 LTTGDGHKLV 10
L TGDG + V
Sbjct: 236 LVTGDGERFV 245


>sp|PAN_METMA|PROTEASOME-ACTIVATING nucleotidase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 GDGHKLV 10
GDG KLV
Sbjct: 235 GDGSKLV 241


>sp|PAN_METAC|PROTEASOME-ACTIVATING nucleotidase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 GDGHKLV 10
GDG KLV
Sbjct: 235 GDGSKLV 241


>sp|RS3A_PYRHO|SMALL ribosomal subunit protein eS1|Pyrococcus horikoshii (strain ATCC

Query: 1 LTTGDGHKL 9
+TT DG++L
Sbjct: 111 ITTKDGYRL 119


>sp|NOB1_ARCFU|ENDORIBONUCLEASE Nob1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 TGDGHKL 9
TGD HKL
Sbjct: 68 TGDIHKL 74


>sp|GCSPA_SULTO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Sulfurisphaera

Query: 1 LTTGDGHKL 9
+T GDG +L
Sbjct: 263 ITVGDGQEL 271


>sp|HEM3_THEVO|PROBABLE porphobilinogen deaminase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 TGDGHKLV 10
+G GHK++
Sbjct: 244 SGKGHKII 251


>sp|PCNA_HALMA|DNA polymerase sliding clamp|Haloarcula marismortui (strain ATCC 43049

Query: 1 LTTGDGHKL 9
LT GD H L
Sbjct: 186 LTPGDAHSL 194


>sp|LADH_META3|LACTALDEHYDE dehydrogenase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 LTTGDGH 7
L TG+GH
Sbjct: 195 LLTGEGH 201


>sp|PUR7_METTH|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 LTTGDGHK 8
+T GDG K
Sbjct: 34 ITAGDGEK 41


>sp|PUR7_SACS2|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LTTGDGHK 8
+T GDG K
Sbjct: 30 ITAGDGQK 37




152|SequenceR|765|756|KLMIDLTTGD

>sp|LEUD_METAC|3-ISOPROPYLMALATE dehydratase small subunit|Methanosarcina acetivorans (strain ATCC

Query: 1 KLMIDLTTGD 10
+L +DL+TGD
Sbjct: 114 ELEVDLSTGD 123


>sp|RS19_METMJ|SMALL ribosomal subunit protein uS19|Methanoculleus marisnigri (strain

Query: 1 KLMIDLTTGD 10
KL+ DL +GD
Sbjct: 56 KLLADLRSGD 65


>sp|GPMI2_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanosarcina barkeri (strain Fusaro /

Query: 3 MIDLTTGD 10
MIDL TG+
Sbjct: 462 MIDLKTGE 469


>sp|MUTS_METTP|DNA mismatch repair protein MutS|Methanothrix thermoacetophila (strain

Query: 3 MIDLTTGD 10
++DL+TGD
Sbjct: 143 LLDLSTGD 150


>sp|AMPPA_METJA|AMP phosphorylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KLMIDLTTG 9
KL+ID+ TG
Sbjct: 276 KLLIDIPTG 284


>sp|NTPTH_METKA|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Methanopyrus kandleri (strain AV19 /

Query: 3 MIDLTTGD 10
++DLT GD
Sbjct: 52 IVDLTEGD 59


>sp|TRPA_HALSA|TRYPTOPHAN synthase alpha chain|Halobacterium salinarum (strain ATCC 700922

Query: 3 MIDLTTG 9
M+DLTTG
Sbjct: 164 MLDLTTG 170


>sp|TRPA_HALS3|TRYPTOPHAN synthase alpha chain|Halobacterium salinarum (strain ATCC 29341

Query: 3 MIDLTTG 9
M+DLTTG
Sbjct: 164 MLDLTTG 170


>sp|EF2_DESA1|ELONGATION factor 2|Desulfurococcus amylolyticus (strain DSM 18924

Query: 2 LMIDLTTG 9
++ID+TTG
Sbjct: 548 ILIDMTTG 555


>sp|RTCA_IGNH4|RNA 3'-terminal phosphate cyclase|Ignicoccus hospitalis (strain KIN4/I

Query: 1 KLMIDLTTG 9
KL+ DL+TG
Sbjct: 275 KLLEDLSTG 283


>sp|RL15_META3|LARGE ribosomal subunit protein uL15|Methanococcus aeolicus (strain ATCC

Query: 1 KLMIDLTTGD 10
K++ID+TT D
Sbjct: 95 KIVIDITTLD 104


>sp|THSB_DESM0|CHAPERONIN subunit beta|Desulfurococcus mucosus (strain ATCC 35584

Query: 2 LMIDLTTGD 10
L IDL TGD
Sbjct: 479 LSIDLATGD 487


>sp|EF2_DESMO|ELONGATION factor 2|Desulfurococcus mucosus (Desulfurococcus mobilis)

Query: 2 LMIDLTTG 9
+++D+TTG
Sbjct: 546 MLVDMTTG 553


>sp|PCNA_HALMA|DNA polymerase sliding clamp|Haloarcula marismortui (strain ATCC 43049

Query: 3 MIDLTTGD 10
+IDLT GD
Sbjct: 183 LIDLTPGD 190


>sp|HIS3_METMP|PHOSPHORIBOSYL-AMP cyclohydrolase|Methanococcus maripaludis (strain DSM 14266

Query: 4 IDLTTGD 10
IDL TGD
Sbjct: 114 IDLNTGD 120




153|SequenceR|770|761|AQKHLKLMID

>sp|Y106_METJA|UNCHARACTERIZED protein MJ0106|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AQKHLKLM 8
A++HLK+M
Sbjct: 220 AEQHLKMM 227


>sp|AGLS_HALVD|DOLICHOL phosphate-mannose mannosyltransferase|Haloferax volcanii (strain

Query: 4 HLKLMI 9
HLKLMI
Sbjct: 257 HLKLMI 262


>sp|Y284_METJA|UNCHARACTERIZED protein MJ0284|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 QKHLKLMID 10
+KHL++M+D
Sbjct: 4 KKHLEMMLD 12


>sp|FTTA_METMA|TRANSCRIPTION termination factor FttA|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 AQKHLKLMI 9
A+KHL++++
Sbjct: 393 AEKHLQMVV 401


>sp|SYM_METJA|METHIONINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AQKHLKLMID 10
++K LKLM+D
Sbjct: 570 SKKLLKLMVD 579


>sp|AATF_THEVO|A-TYPE ATP synthase subunit F|Thermoplasma volcanium (strain ATCC 51530

Query: 3 KHLKLMID 10
+HLK MID
Sbjct: 53 EHLKNMID 60




154|SequenceR|775|766|EEQMDAQKHL

>sp|COBD_METTP|PROBABLE cobalamin biosynthesis protein CobD|Methanothrix thermoacetophila

Query: 1 EEQMDAQKHL 10
+E +DA KHL
Sbjct: 120 DEDLDAAKHL 129


>sp|METK_SACI1|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 4 MDAQKHL 10
+DA+KHL
Sbjct: 126 LDAEKHL 132


>sp|METK_SACI7|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 4 MDAQKHL 10
+DA+KHL
Sbjct: 126 LDAEKHL 132


>sp|METK_SACI6|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 4 MDAQKHL 10
+DA+KHL
Sbjct: 126 LDAEKHL 132


>sp|METK_SACI4|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 4 MDAQKHL 10
+DA+KHL
Sbjct: 126 LDAEKHL 132


>sp|METK_SACI3|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 4 MDAQKHL 10
+DA+KHL
Sbjct: 126 LDAEKHL 132


>sp|METK_SACI2|S-ADENOSYLMETHIONINE synthase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 4 MDAQKHL 10
+DA+KHL
Sbjct: 126 LDAEKHL 132




155|SequenceR|780|771|EIRNKEEQMD

>sp|ALF1_THEKO|FRUCTOSE-BISPHOSPHATE aldolase class 1|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 EIRNKEEQM 9
E+R KEEQ+
Sbjct: 92 ELRPKEEQL 100


>sp|GATA_SULAC|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Sulfolobus acidocaldarius (strain ATCC

Query: 2 IRNKEEQMD 10
IRNK+E +D
Sbjct: 40 IRNKQEIID 48


>sp|RGYR_PYRHO|REVERSE gyrase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 EIRNKEEQMD 10
E+ N+E++MD
Sbjct: 1083 ELNNREQEMD 1092


>sp|Y1357_HALVD|PUTATIVE transcriptional regulator HVO_1357|Haloferax volcanii (strain ATCC

Query: 2 IRNKEEQMD 10
IRN+E Q+D
Sbjct: 183 IRNREAQLD 191




156|SequenceR|785|776|AGLVREIRNK

>sp|RS19E_SACS2|SMALL ribosomal subunit protein eS19|Saccharolobus solfataricus (strain

Query: 1 AGLVREIRNK 10
AGLV++I+NK
Sbjct: 114 AGLVQKIKNK 123


>sp|T2RM_METJA|PUTATIVE type II restriction enzyme|Methanocaldococcus jannaschii (strain ATCC

Query: 3 LVREIRNK 10
LVR+IRNK
Sbjct: 1173 LVRKIRNK 1180


>sp|HMU_HALWD|HALOMUCIN walsbyi (strain DSM 16790

Query: 1 AGLVREIRN 9
GL+ EIRN
Sbjct: 3343 GGLIGEIRN 3351


>sp|CDVB2_SULAC|CELL division protein B2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 GLVREIRN 9
G++RE+RN
Sbjct: 130 GVIRELRN 137


>sp|PDXS_METST|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Methanosphaera stadtmanae

Query: 2 GLVREIRNK 10
G +REI NK
Sbjct: 168 GAIREIENK 176


>sp|SPSS2_METLZ|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 2|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 GLVREIR 8
G+VREIR
Sbjct: 122 GVVREIR 128


>sp|IF2P_METVS|PROBABLE translation initiation factor IF-2|Methanococcus vannielii (strain

Query: 2 GLVREIRN 9
G V+EIRN
Sbjct: 510 GYVKEIRN 517


>sp|SYT_THEGJ|THREONINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 3 LVREIRNK 10
L+REIR K
Sbjct: 596 LIREIRQK 603


>sp|SYR_METMP|ARGININE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 AGLVREIRNK 10
+G+VRE+ N+
Sbjct: 265 SGMVREVINR 274


>sp|DNAJ_METTH|CHAPERONE protein DnaJ|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 AGLVREIRN 9
+G VR++RN
Sbjct: 171 SGQVRQVRN 179


>sp|RFCL_THEKO|REPLICATION factor C large subunit|Thermococcus kodakarensis (strain ATCC

Query: 5 REIRNK 10
REIRNK
Sbjct: 144 REIRNK 149




157|SequenceR|790|781|DPLLTAGLVR

>sp|FBPAP_PYRNV|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 DPLLTAGLV 9
DP TAGLV
Sbjct: 149 DPFTTAGLV 157


>sp|FBPAP_IGNH4|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 DPLLTAGLV 9
DP TAGLV
Sbjct: 150 DPFNTAGLV 158


>sp|FBPAP_METTM|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Methanothermobacter marburgensis (strain ATCC

Query: 1 DPLLTAGLV 9
DP TAGLV
Sbjct: 148 DPFNTAGLV 156


>sp|FBPAP_METJA|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 DPLLTAGLV 9
DP TAGLV
Sbjct: 153 DPFNTAGLV 161


>sp|FBPAP_THEON|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Thermococcus onnurineus (strain NA1)

Query: 1 DPLLTAGLV 9
DP TAGLV
Sbjct: 152 DPFNTAGLV 160


>sp|SPSS_METAC|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 DPLLTAGLV 9
DPL T GL+
Sbjct: 25 DPLQTGGLL 33


>sp|SPSS_METMA|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 DPLLTAGLV 9
DPL T GL+
Sbjct: 25 DPLQTGGLL 33


>sp|FBPAP_METS5|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Metallosphaera sedula (strain ATCC 51363

Query: 1 DPLLTAGLV 9
DP TAGLV
Sbjct: 148 DPFNTAGLV 156


>sp|SPSS1_METAR|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 1|Methanocella arvoryzae (strain DSM 22066

Query: 1 DPLLTAGLV 9
DPL T GL+
Sbjct: 24 DPLQTGGLL 32


>sp|FBPAP_THEKO|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 DPLLTAGLV 9
DP TAGL+
Sbjct: 152 DPFNTAGLI 160


>sp|CSD_AERPE|PROBABLE cysteine desulfurase|Aeropyrum pernix (strain ATCC 700893

Query: 1 DPLLTAGLVR 10
+PL + GL+R
Sbjct: 316 EPLYSEGLIR 325


>sp|QOXM_SULAC|QUINOL oxidase subunit 1/3|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 PLLTAGLV 9
P LTAGLV
Sbjct: 198 PSLTAGLV 205


>sp|NIFK_METMP|NITROGENASE molybdenum-iron protein beta chain|Methanococcus maripaludis

Query: 1 DPLLTAGLVR 10
DP +T G+ R
Sbjct: 328 DPSITVGMAR 337


>sp|NIFK_METMI|NITROGENASE molybdenum-iron protein beta chain|Methanococcus maripaludis

Query: 1 DPLLTAGLVR 10
DP +T G+ R
Sbjct: 328 DPSITVGMAR 337


>sp|PGK_NATPD|PHOSPHOGLYCERATE kinase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 DPLLTAGLV 9
D +LTAG+V
Sbjct: 218 DSVLTAGIV 226


>sp|SYA_KORCO|ALANINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 2 PLLTAGLV 9
P +TAG+V
Sbjct: 99 PFITAGIV 106


>sp|SECY_SACS2|PROTEIN translocase subunit SecY|Saccharolobus solfataricus (strain ATCC

Query: 2 PLLTAGLV 9
P++TAGL+
Sbjct: 81 PIITAGLI 88




158|SequenceR|795|786|VKQILDPLLT

>sp|ARLY_METBU|ARGININOSUCCINATE lyase|Methanococcoides burtonii (strain DSM 6242

Query: 1 VKQILDPLL 9
VK+ LDP+L
Sbjct: 425 VKEALDPIL 433


>sp|PRIS_METMP|DNA primase small subunit PriS|Methanococcus maripaludis (strain DSM

Query: 1 VKQILDPL 8
+KQ LDPL
Sbjct: 317 IKQELDPL 324


>sp|RL31_SULTO|LARGE ribosomal subunit protein eL31|Sulfurisphaera tokodaii (strain

Query: 2 KQILDPLL 9
K I+DPLL
Sbjct: 44 KVIIDPLL 51


>sp|RL31_SULAC|LARGE ribosomal subunit protein eL31|Sulfolobus acidocaldarius (strain

Query: 2 KQILDPLL 9
K I+DPLL
Sbjct: 85 KVIIDPLL 92


>sp|IF2P_THESM|PROBABLE translation initiation factor IF-2|Thermococcus sibiricus (strain

Query: 1 VKQILDPLLT 10
VKQ+ PLL+
Sbjct: 53 VKQLAGPLLS 62




159|SequenceR|800|791|LAFTLVKQIL

>sp|SYFB_METM6|PHENYLALANINE--TRNA ligase beta subunit|Methanococcus maripaludis (strain C6 /

Query: 1 LAFTLVKQIL 10
+AF LVK +L
Sbjct: 106 VAFALVKNVL 115


>sp|SYFB_METM5|PHENYLALANINE--TRNA ligase beta subunit|Methanococcus maripaludis (strain C5 /

Query: 1 LAFTLVKQIL 10
+AF LVK +L
Sbjct: 106 VAFALVKNVL 115


>sp|SYFB_METMP|PHENYLALANINE--TRNA ligase beta subunit|Methanococcus maripaludis (strain DSM 14266

Query: 1 LAFTLVKQIL 10
+AF LVK +L
Sbjct: 106 VAFALVKNVL 115


>sp|SYFB_METM7|PHENYLALANINE--TRNA ligase beta subunit|Methanococcus maripaludis (strain C7 /

Query: 1 LAFTLVKQIL 10
+AF LVK +L
Sbjct: 106 VAFALVKNVL 115


>sp|SYK_PYRFU|LYSINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LAFTLVKQ 8
+ FTLVKQ
Sbjct: 388 IIFTLVKQ 395




160|SequenceR|805|796|RVEESLAFTL

***** No hits found ******


161|SequenceR|810|801|VTDQPRVEES

>sp|SYW1_HALSA|TRYPTOPHAN--TRNA ligase 1|Halobacterium salinarum (strain ATCC 700922

Query: 2 TDQPRVEES 10
TDQPR E+
Sbjct: 273 TDQPRCTEA 281




162|SequenceR|815|806|GGIVSVTDQP

>sp|PYRC_METAC|DIHYDROOROTASE acetivorans (strain ATCC 35395

Query: 1 GGIVSVTDQP 10
GGI +V DQP
Sbjct: 84 GGIATVIDQP 93


>sp|RFCL_METBU|REPLICATION factor C large subunit|Methanococcoides burtonii (strain DSM 6242

Query: 1 GGIVSVTDQP 10
GGI+ TDQP
Sbjct: 128 GGIIKNTDQP 137


>sp|PYRC_METMA|DIHYDROOROTASE mazei (strain ATCC BAA-159

Query: 1 GGIVSVTDQP 10
GGI +V DQP
Sbjct: 84 GGIATVIDQP 93


>sp|PYRC_ARCFU|DIHYDROOROTASE fulgidus (strain ATCC 49558

Query: 1 GGIVSVTDQP 10
GGI V DQP
Sbjct: 72 GGICLVVDQP 81


>sp|PYRC_HALSA|DIHYDROOROTASE salinarum (strain ATCC 700922

Query: 1 GGIVSVTDQP 10
GG+ +V DQP
Sbjct: 77 GGVTTVVDQP 86


>sp|OTC_METMA|ORNITHINE carbamoyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GGIVSVTDQP 10
GG S+TD P
Sbjct: 199 GGKFSITDDP 208


>sp|SYY_METLZ|TYROSINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 GGIVSVTDQP 10
G +VSV D P
Sbjct: 214 GNVVSVADSP 223


>sp|PYRC_PYRAB|DIHYDROOROTASE abyssi (strain GE5 /

Query: 1 GGIVSVTDQP 10
GGI +V D P
Sbjct: 81 GGITTVFDMP 90


>sp|PYRC_PYRHO|DIHYDROOROTASE horikoshii (strain ATCC 700860

Query: 1 GGIVSVTDQP 10
GGI +V D P
Sbjct: 84 GGITTVFDMP 93


>sp|TRM56_THEAC|TRNA (cytidine(56)-2'-O)-methyltransferase|Thermoplasma acidophilum

Query: 4 VSVTDQP 10
VSVT+QP
Sbjct: 121 VSVTNQP 127


>sp|PYRC_METKA|DIHYDROOROTASE kandleri (strain AV19 /

Query: 1 GGIVSVTDQP 10
GG+ +V D P
Sbjct: 85 GGVATVVDMP 94


>sp|TRM56_THEVO|TRNA (cytidine(56)-2'-O)-methyltransferase|Thermoplasma volcanium

Query: 4 VSVTDQP 10
VSVT+QP
Sbjct: 121 VSVTNQP 127


>sp|PYRC_THEKO|DIHYDROOROTASE kodakarensis (strain ATCC BAA-918

Query: 1 GGIVSVTDQP 10
GGI +V D P
Sbjct: 81 GGITAVFDMP 90


>sp|CYAS_METTP|CYSTEATE synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 IVSVTDQP 10
+ S+TDQP
Sbjct: 139 VCSITDQP 146


>sp|PYRG_THEVO|CTP synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 GGIVSVTD 8
GGI+SV D
Sbjct: 231 GGIISVYD 238


>sp|SYDND_ARCFU|ASPARTATE--TRNA(ASP/ASN) ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GGIVSVTDQP 10
GG+ +TD P
Sbjct: 315 GGLYFITDWP 324


>sp|PURL_METST|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanosphaera stadtmanae (strain ATCC

Query: 1 GGIVSVTDQ 9
GIVS+TD+
Sbjct: 62 AGIVSLTDE 70


>sp|AMPPA_NATPD|AMP phosphorylase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 GIVSVTDQ 9
GIV VTD+
Sbjct: 46 GIVKVTDE 53


>sp|PURL_METS3|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Methanobrevibacter smithii (strain ATCC

Query: 1 GGIVSVTDQ 9
G+VSVTD+
Sbjct: 62 AGLVSVTDK 70




163|SequenceR|820|811|SGGAVGGIVS

>sp|DHQS_NITMS|3-DEHYDROQUINATE synthase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 SGGAVGGIVS 10
+GG +GGI++
Sbjct: 293 AGGEIGGIIA 302


>sp|DHE_HALSI|GLUTAMATE dehydrogenase A2|Halobacterium salinarum (Halobacterium halobium)

Query: 2 GGAVGGIV 9
GGA GGIV
Sbjct: 102 GGAKGGIV 109


>sp|DHE_HALSA|GLUTAMATE dehydrogenase A2|Halobacterium salinarum (strain ATCC 700922

Query: 2 GGAVGGIV 9
GGA GGIV
Sbjct: 102 GGAKGGIV 109


>sp|ACDB2_METMA|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanosarcina mazei

Query: 1 SGGAVGGI 8
SGG+ GGI
Sbjct: 440 SGGSSGGI 447


>sp|ACDB2_METAC|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanosarcina

Query: 1 SGGAVGGI 8
SGG+ GGI
Sbjct: 440 SGGSSGGI 447


>sp|ACDB1_METMA|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanosarcina mazei

Query: 1 SGGAVGGI 8
SGG+ GGI
Sbjct: 439 SGGSSGGI 446


>sp|ACDB1_METAC|ACETYL-COA decarbonylase/synthase complex subunit beta|Methanosarcina

Query: 1 SGGAVGGI 8
SGG+ GGI
Sbjct: 439 SGGSSGGI 446


>sp|GPMI1_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 1|Methanosarcina acetivorans (strain ATCC

Query: 1 SGGAVG 6
SGGAVG
Sbjct: 50 SGGAVG 55


>sp|METXA_HALMA|HOMOSERINE O-acetyltransferase|Haloarcula marismortui (strain ATCC 43049

Query: 2 GGAVGGI 8
GG+VGG+
Sbjct: 144 GGSVGGM 150


>sp|Y1396_METJA|UNCHARACTERIZED protein MJ1396|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GGAVGGI 8
GG VGGI
Sbjct: 2572 GGKVGGI 2578


>sp|TRPE_METTM|ANTHRANILATE synthase component 1|Methanothermobacter marburgensis (strain ATCC

Query: 1 SGGAVGGIV 9
SGG GG+V
Sbjct: 101 SGGFCGGLV 109




164|SequenceR|825|816|KRGHKSGGAV

>sp|Y1649_METJA|PUTATIVE ribosomal RNA large subunit|Methanocaldococcus jannaschii (strain

Query: 2 RGHKSG 7
RGHK+G
Sbjct: 190 RGHKTG 195


>sp|AATI_METJA|A-TYPE ATP synthase subunit I|Methanocaldococcus jannaschii (strain ATCC

Query: 2 RGHKSGGAV 10
+G+KSGG +
Sbjct: 574 KGYKSGGVM 582


>sp|THIC_SULTO|PHOSPHOMETHYLPYRIMIDINE synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 HKSGGA 9
HKSGGA
Sbjct: 132 HKSGGA 137


>sp|GCK_PICTO|GLYCERATE 2-kinase|Picrophilus torridus (strain ATCC 700027

Query: 2 RGHKSGG 8
+GH SGG
Sbjct: 320 KGHGSGG 326


>sp|HMPTM_METJA|7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN dimethyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 KRGHKSGG 8
KR HK GG
Sbjct: 492 KRMHKIGG 499




165|SequenceR|830|821|FKWAAKRGHK

>sp|DPOL1_AERPE|DNA polymerase 1|Aeropyrum pernix (strain ATCC 700893

Query: 2 KWAAKRGHK 10
KWA + GHK
Sbjct: 159 KWADRTGHK 167


>sp|NADA_HALSA|QUINOLINATE synthase|Halobacterium salinarum (strain ATCC 700922

Query: 1 FKWAAKRGHK 10
F+WA +RG K
Sbjct: 176 FEWAFERGDK 185


>sp|NADA_HALS3|QUINOLINATE synthase|Halobacterium salinarum (strain ATCC 29341

Query: 1 FKWAAKRGHK 10
F+WA +RG K
Sbjct: 176 FEWAFERGDK 185


>sp|AMTAB_PYRAB|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 2 KWAAKRGHK 10
KWA K+G+K
Sbjct: 177 KWAIKQGYK 185


>sp|AMTAB_PYRHO|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 2 KWAAKRGHK 10
KWA K+G+K
Sbjct: 177 KWAIKQGYK 185


>sp|CAS3_METTH|CRISPR-ASSOCIATED nuclease/helicase Cas3|Methanothermobacter thermautotrophicus

Query: 3 WAAKRGHK 10
WAAK G K
Sbjct: 312 WAAKHGRK 319


>sp|DNLI_METVS|DNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 1 FKWAAKRGHK 10
FKW+ GH+
Sbjct: 407 FKWSLSIGHE 416


>sp|SRP54_PYRAE|SIGNAL recognition particle 54 kDa|Pyrobaculum aerophilum (strain ATCC

Query: 2 KWAAKRGHK 10
K+ AKRG+K
Sbjct: 121 KYLAKRGYK 129


>sp|SRP54_PYRCJ|SIGNAL recognition particle 54 kDa|Pyrobaculum calidifontis (strain DSM

Query: 2 KWAAKRGHK 10
K+ AKRG+K
Sbjct: 120 KYLAKRGYK 128


>sp|FWDA_METJA|PROTEIN FwdA|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KWAAKRGH 9
KWA +R H
Sbjct: 417 KWAQQRSH 424


>sp|Y916_METST|UPF0425 pyridoxal phosphate-dependent protein Msp_0916|Methanosphaera

Query: 1 FKWAAKRGHK 10
F WAAK K
Sbjct: 342 FDWAAKDSDK 351


>sp|TTRA_ARCFU|TETRATHIONATE reductase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 KWAAKRGHK 10
KW+AK G K
Sbjct: 232 KWSAKLGEK 240


>sp|CPGS_THEKO|CYCLIC 2,3-diphosphoglycerate synthetase|Thermococcus kodakarensis (strain

Query: 2 KWAAKRG 8
KWA +RG
Sbjct: 392 KWALERG 398


>sp|DNLI_METST|DNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 FKWAAKRGHK 10
F W+ GH+
Sbjct: 393 FTWSIDEGHE 402


>sp|AATD_METKA|A-TYPE ATP synthase subunit D|Methanopyrus kandleri (strain AV19 /

Query: 5 AKRGHK 10
AK+GHK
Sbjct: 26 AKKGHK 31


>sp|SECF_METP4|PROTEIN-EXPORT membrane protein SecF|Methanolacinia petrolearia (strain DSM 11571

Query: 1 FKWAAKRGHK 10
KW K+G K
Sbjct: 273 LKWYVKKGGK 282


>sp|RL4_PYRAE|LARGE ribosomal subunit protein uL4|Pyrobaculum aerophilum (strain ATCC

Query: 3 WAAKRGH 9
W A RGH
Sbjct: 153 WVAARGH 159


>sp|PGP_METS5|PHOSPHOGLYCOLATE phosphatase|Metallosphaera sedula (strain ATCC 51363

Query: 2 KWAAKRG 8
KWA +RG
Sbjct: 125 KWAEERG 131


>sp|Y1986_AERPE|UNCHARACTERIZED protein APE_1986.1|Aeropyrum pernix (strain ATCC 700893

Query: 2 KWAAKRGH 9
KWA +RG+
Sbjct: 21 KWAFERGY 28


>sp|AATD_THEON|A-TYPE ATP synthase subunit D|Thermococcus onnurineus (strain NA1)

Query: 5 AKRGHK 10
AK+GHK
Sbjct: 24 AKKGHK 29


>sp|Y3407_METJA|UNCHARACTERIZED protein MJECS07|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KWAAKRGHK 10
+WA+K G+K
Sbjct: 379 RWASKYGNK 387


>sp|AATD_DESSY|A-TYPE ATP synthase subunit D|Desulfurococcus sp. (strain SY)

Query: 5 AKRGHK 10
AK+GHK
Sbjct: 24 AKKGHK 29


>sp|AATD_THEKO|A-TYPE ATP synthase subunit D|Thermococcus kodakarensis (strain ATCC

Query: 5 AKRGHK 10
AK+GHK
Sbjct: 24 AKKGHK 29


>sp|AATD_THEGJ|A-TYPE ATP synthase subunit D|Thermococcus gammatolerans (strain DSM

Query: 5 AKRGHK 10
AK+GHK
Sbjct: 24 AKKGHK 29


>sp|Y1241_METJA|UNCHARACTERIZED protein MJ1241|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KWAAKRG 8
KW KRG
Sbjct: 8 KWYVKRG 14




166|SequenceR|835|826|WNDKIFKWAA

>sp|PURP_SACS2|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Saccharolobus solfataricus (strain ATCC

Query: 2 NDKIFKWAA 10
N KIF+W A
Sbjct: 93 NKKIFEWEA 101


>sp|SPSS1_METBU|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 1|Methanococcoides burtonii (strain DSM 6242

Query: 1 WNDKIFK 7
W DKIF+
Sbjct: 300 WADKIFR 306


>sp|DNAK_HALWD|CHAPERONE protein DnaK|Haloquadratum walsbyi (strain DSM 16790

Query: 1 WNDKIFKWAA 10
W+D + W A
Sbjct: 206 WDDAVIDWLA 215


>sp|Y148_ARCFU|UNCHARACTERIZED protein AF_0148|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 WNDKIFKWAA 10
W++++ KW A
Sbjct: 7 WDEEVMKWLA 16


>sp|Y3513_METJA|MCM-LIKE protein MJECL13|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 WNDKIF 6
W+DK+F
Sbjct: 155 WDDKVF 160


>sp|MPGP_PYRAB|MANNOSYL-3-PHOSPHOGLYCERATE phosphatase|Pyrococcus abyssi (strain GE5 /

Query: 1 WNDKIFKWA 9
+++ IFKW+
Sbjct: 142 YSETIFKWS 150


>sp|K6PF_PYRFU|ADP-SPECIFIC phosphofructokinase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 WNDKIFKW 8
W DK FK+
Sbjct: 84 WFDKTFKY 91


>sp|PSTB_PYRAB|PHOSPHATE import ATP-binding protein PstB|Pyrococcus abyssi (strain GE5 /

Query: 3 DKIFKWA 9
D+I KWA
Sbjct: 123 DEIVKWA 129


>sp|DNAK_HALMT|CHAPERONE protein DnaK|Haloferax mediterranei (strain ATCC 33500

Query: 1 WNDKIFKWAA 10
W++ I W A
Sbjct: 206 WDEAIIDWLA 215


>sp|EF2_CENSY|ELONGATION factor 2|Cenarchaeum symbiosum (strain A)

Query: 1 WNDKIFKWA 9
WN +WA
Sbjct: 688 WNSHFKRWA 696


>sp|PSTB_METJA|PHOSPHATE import ATP-binding protein PstB|Methanocaldococcus jannaschii

Query: 3 DKIFKWA 9
DKI +WA
Sbjct: 122 DKIVEWA 128


>sp|SYI_SULTO|ISOLEUCINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 WNDKIFKWAA 10
W D F W A
Sbjct: 629 WEDAKFSWKA 638


>sp|GLGB_PICTO|1,4-ALPHA-GLUCAN branching enzyme GlgB|Picrophilus torridus (strain ATCC 700027

Query: 1 WNDKIFKW 8
+NDK F W
Sbjct: 598 YNDKNFSW 605




167|SequenceR|840|831|NYLEEWNDKI

>sp|DTDA_METHJ|D-AMINOACYL-TRNA deacylase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 EEWNDKI 10
+EWND+I
Sbjct: 152 KEWNDRI 158


>sp|RTCA_PYRHO|RNA 3'-terminal phosphate cyclase|Pyrococcus horikoshii (strain ATCC

Query: 2 YLEEWNDK 9
Y+E WN+K
Sbjct: 167 YVEPWNEK 174


>sp|SURE1_PYRAE|5'-NUCLEOTIDASE SurE 1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 YLEEWND 8
YLE WN+
Sbjct: 128 YLENWNE 134


>sp|SPSS1_METBU|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase 1|Methanococcoides burtonii (strain DSM 6242

Query: 4 EEWNDKI 10
EEW DKI
Sbjct: 298 EEWADKI 304


>sp|PYRB_THEVO|ASPARTATE carbamoyltransferase catalytic subunit|Thermoplasma volcanium

Query: 1 NYLEEWND 8
NY++E+ND
Sbjct: 205 NYVKEYND 212


>sp|GUOP_HALLT|GUANOSINE phosphorylase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 YLEEWND 8
Y+++WND
Sbjct: 165 YVDDWND 171


>sp|TRPA_SULAC|TRYPTOPHAN synthase alpha chain|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 NYLEEWNDKI 10
YLEE+ DK+
Sbjct: 84 TYLEEYVDKL 93


>sp|CBID_METMA|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 YLEEWNDKI 10
++E WND +
Sbjct: 206 FVEPWNDHL 214


>sp|CBID_METBU|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 2 YLEEWNDKI 10
++E WND +
Sbjct: 207 FVEPWNDHL 215


>sp|CBID_METBF|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 2 YLEEWNDKI 10
++E WND +
Sbjct: 206 FVEPWNDHL 214


>sp|CBID_METAC|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanosarcina acetivorans (strain ATCC

Query: 2 YLEEWNDKI 10
++E WND +
Sbjct: 206 FVEPWNDHL 214


>sp|TRPA_SACS2|TRYPTOPHAN synthase alpha chain|Saccharolobus solfataricus (strain ATCC

Query: 1 NYLEEWNDKI 10
YLE+W D++
Sbjct: 83 TYLEDWVDQL 92


>sp|DTDA_CENSY|D-AMINOACYL-TRNA deacylase|Cenarchaeum symbiosum (strain A)

Query: 4 EEWNDK 9
++WNDK
Sbjct: 148 KQWNDK 153


>sp|Y1058_METJA|UNCHARACTERIZED protein MJ1058|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 NYLEEWNDKI 10
YL++W +KI
Sbjct: 297 QYLQKWKEKI 306


>sp|RNJL_SACS2|RNASE aCSPSF2|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 NYLEEWNDK 9
NY++ W D+
Sbjct: 352 NYVKGWEDR 360


>sp|COFH_METTH|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanothermobacter

Query: 2 YLEEWN 7
Y+E WN
Sbjct: 56 YIENWN 61


>sp|NTPPA_PYRAB|DTTP/UTP pyrophosphatase|Pyrococcus abyssi (strain GE5 /

Query: 4 EEWNDK 9
EEW DK
Sbjct: 136 EEWKDK 141


>sp|DP2L_THEKO|DNA polymerase II large subunit|Thermococcus kodakarensis (strain ATCC

Query: 1 NYLEEW 6
NY+EEW
Sbjct: 464 NYVEEW 469


>sp|DP2L_PYRFU|DNA polymerase II large subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 1 NYLEEW 6
NY+EEW
Sbjct: 455 NYVEEW 460


>sp|Y1067_METMP|UNCHARACTERIZED iron-sulfur protein MMP1067|Methanococcus maripaludis (strain DSM

Query: 1 NYLEEWNDKI 10
NY+++ N+KI
Sbjct: 104 NYIQKKNEKI 113


>sp|PRIS_THESM|DNA primase small subunit PriS|Thermococcus sibiricus (strain DSM

Query: 2 YLEEWNDK 9
YL+EWN K
Sbjct: 17 YLKEWNVK 24


>sp|Y144_METJA|UNCHARACTERIZED protein MJ0144|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 EEWNDKI 10
EE+NDKI
Sbjct: 207 EEFNDKI 213


>sp|MCRA_METKA|METHYL-COENZYME M reductase I subunit|Methanopyrus kandleri (strain AV19 /

Query: 3 LEEWNDKI 10
+EW DKI
Sbjct: 43 FKEWADKI 50


>sp|GGR_PYRAB|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Pyrococcus abyssi (strain GE5 /

Query: 1 NYLEEW 6
NY EEW
Sbjct: 315 NYSEEW 320


>sp|SECG_SULTO|PREPROTEIN translocase subunit SecG|Sulfurisphaera tokodaii (strain DSM

Query: 2 YLEEWNDKI 10
Y EE N+KI
Sbjct: 22 YYEEENEKI 30


>sp|NIKR_HALWD|PUTATIVE nickel-responsive regulator|Haloquadratum walsbyi (strain DSM

Query: 1 NYLEEWNDK 9
N LEE+ DK
Sbjct: 38 NLLEEFEDK 46


>sp|GLCD2_PICTO|GLUCOSE/GALACTOSE 1-dehydrogenase|Picrophilus torridus (strain ATCC 700027

Query: 2 YLEEWN 7
YLE+WN
Sbjct: 316 YLEKWN 321


>sp|Y1433_METJA|UNCHARACTERIZED protein MJ1433|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 EEWNDK 9
+EWNDK
Sbjct: 108 DEWNDK 113


>sp|HTPX_METKA|PROTEASE HtpX homolog|Methanopyrus kandleri (strain AV19 /

Query: 2 YLEEWND 8
Y E+W D
Sbjct: 202 YTEDWED 208


>sp|RS5_METKA|SMALL ribosomal subunit protein uS5|Methanopyrus kandleri (strain AV19

Query: 2 YLEEWNDK 9
+LEEW K
Sbjct: 6 HLEEWEPK 13


>sp|TMBL2_THEKO|DNA-BINDING HTH-type transcriptional repressor TrmBL2|Thermococcus

Query: 1 NYLEEWNDKI 10
++EEW +++
Sbjct: 83 KFIEEWQERV 92


>sp|T2MZ_METTF|TYPE II restriction enzyme MthZI|Methanothermobacter

Query: 2 YLEEWNDKI 10
YLE ++D+I
Sbjct: 71 YLEHYSDRI 79


>sp|DCUP_PICTO|UROPORPHYRINOGEN decarboxylase|Picrophilus torridus (strain ATCC 700027

Query: 2 YLEEWNDK 9
YL+E+N+K
Sbjct: 27 YLKEYNEK 34


>sp|Y1266_METJA|UNCHARACTERIZED protein MJ1266|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 LEEWNDK 9
L EWND+
Sbjct: 380 LNEWNDR 386


>sp|DPOL_THEAG|DNA polymerase|Thermococcus aggregans

Query: 1 NYLEEWNDKI 10
Y+EE DK+
Sbjct: 881 RYMEEQKDKV 890


>sp|NFI_NANEQ|BIFUNCTIONAL methyltransferase-like/endonuclease|Nanoarchaeum equitans (strain

Query: 2 YLEEWNDK 9
+++EWN K
Sbjct: 267 FIKEWNSK 274


>sp|SYM_SACS2|METHIONINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 LEEWNDKI 10
L E+NDKI
Sbjct: 192 LSEFNDKI 199




168|SequenceR|845|836|GGQYRNYLEE

>sp|IF2P_PYRAE|PROBABLE translation initiation factor IF-2|Pyrobaculum aerophilum (strain

Query: 3 QYRNYLEE 10
QYR YL E
Sbjct: 567 QYRQYLRE 574


>sp|ARLMC_PYRHO|23S rRNA (uracil(747)-C(5))-methyltransferase|Pyrococcus horikoshii

Query: 4 YRNYLEE 10
YRNYL E
Sbjct: 378 YRNYLSE 384


>sp|SYT_PYRAE|THREONINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GGQYRNYLEE 10
GGQY+ LEE
Sbjct: 569 GGQYKIRLEE 578


>sp|ARCSA_THEAC|ARCHAEOSINE synthase subunit alpha|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 QYRNYLEE 10
+YRNY+ E
Sbjct: 225 RYRNYISE 232


>sp|Y3512_METJA|UNCHARACTERIZED protein MJECL12|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GQYRNYLEE 10
G YR ++EE
Sbjct: 209 GLYRKFIEE 217


>sp|PSA1_HALMA|PROTEASOME subunit alpha 1|Haloarcula marismortui (strain ATCC 43049

Query: 2 GQYRNYLEE 10
G R+YLEE
Sbjct: 172 GDIRDYLEE 180


>sp|PYRH_METLZ|URIDYLATE kinase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 GGQYRNYLE 9
GG+ R Y+E
Sbjct: 46 GGEARRYIE 54


>sp|SYL_PYRNV|LEUCINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 4 YRNYLEE 10
YRNY+E+
Sbjct: 902 YRNYVEK 908


>sp|IF2P_PYRIL|PROBABLE translation initiation factor IF-2|Pyrobaculum islandicum (strain

Query: 3 QYRNYLEE 10
QYR YL +
Sbjct: 566 QYRQYLRD 573


>sp|SURE_THEPD|5'-NUCLEOTIDASE SurE|Thermofilum pendens (strain DSM 2475

Query: 2 GQYRNYL 8
G+YRN++
Sbjct: 138 GEYRNFV 144


>sp|IF2P_PYRNV|PROBABLE translation initiation factor IF-2|Pyrobaculum neutrophilum (strain

Query: 3 QYRNYLEE 10
QY+ YL E
Sbjct: 566 QYKQYLRE 573


>sp|GLT_PYRHO|SODIUM-ASPARTATE symporter Glt(Ph)|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GQYRNYLE 9
G YR Y+E
Sbjct: 2 GLYRKYIE 9


>sp|PYLC_METMA|3-METHYL-D-ORNITHINE--L-LYSINE ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GGQYRNYLEE 10
G Y NY EE
Sbjct: 316 GNDYGNYYEE 325


>sp|PELO_METST|PROTEIN pelota homolog|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 YRNYLEE 10
Y NYLEE
Sbjct: 212 YYNYLEE 218


>sp|Y579_METJA|UNCHARACTERIZED protein MJ0579|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 RNYLEE 10
RNY+EE
Sbjct: 256 RNYIEE 261


>sp|SYL_PYRAE|LEUCINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 GQYRNYLEE 10
Y+NY+E+
Sbjct: 900 ASYKNYMEK 908


>sp|NARH_HALMT|RESPIRATORY nitrate reductase subunit beta|Haloferax mediterranei (strain ATCC

Query: 5 RNYLEE 10
RNYLEE
Sbjct: 298 RNYLEE 303


>sp|DPOL3_SACSH|DNA polymerase 3|Saccharolobus shibatae (strain ATCC 51178

Query: 2 GQYRNYLEE 10
G Y+ +LEE
Sbjct: 466 GLYKTFLEE 474


>sp|SYH_HALWD|HISTIDINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 GGQYRNYLE 9
GG+Y N +E
Sbjct: 294 GGRYDNLIE 302


>sp|ATGT_THEKO|TRNA-GUANINE(15) transglycosylase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 QYRNYLEE 10
+YR YLE+
Sbjct: 347 EYREYLEK 354


>sp|ARLMC_PYRAB|23S rRNA (uracil(747)-C(5))-methyltransferase|Pyrococcus abyssi (strain

Query: 4 YRNYLEE 10
YRNYL +
Sbjct: 376 YRNYLSK 382


>sp|GLNA_PYRHO|GLUTAMINE synthetase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GGQYRNYL 8
GG YRN++
Sbjct: 399 GGAYRNFV 406


>sp|AGLB1_PYRFU|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase 1|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GGQYRNY 7
GG+Y NY
Sbjct: 294 GGKYLNY 300


>sp|HEM1_METM5|GLUTAMYL-TRNA reductase|Methanococcus maripaludis (strain C5 /

Query: 3 QYRNYLEE 10
++ NY+EE
Sbjct: 316 EFNNYIEE 323


>sp|RS7_PICTO|SMALL ribosomal subunit protein uS7|Picrophilus torridus (strain ATCC

Query: 1 GGQYRNY 7
GG+Y NY
Sbjct: 36 GGRYSNY 42




169|SequenceR|850|841|RSILFGGQYR

>sp|SYI_METKA|ISOLEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 RSILFGGQYR 10
RSIL G+YR
Sbjct: 937 RSILKDGEYR 946


>sp|GUAAA_SULTO|GMP synthase [glutamine-hydrolyzing] subunit A|Sulfurisphaera

Query: 3 ILFGGQY 9
I FGGQY
Sbjct: 6 IYFGGQY 12


>sp|GUAAA_SULAC|GMP synthase [glutamine-hydrolyzing] subunit A|Sulfolobus

Query: 3 ILFGGQY 9
I FGGQY
Sbjct: 6 IYFGGQY 12


>sp|GUAAA_IGNH4|GMP synthase [glutamine-hydrolyzing] subunit A|Ignicoccus hospitalis

Query: 3 ILFGGQY 9
+ FGGQY
Sbjct: 7 VAFGGQY 13


>sp|DAPB_METKA|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanopyrus kandleri (strain AV19 /

Query: 1 RSILFGGQ 8
R +LFGG+
Sbjct: 263 RDVLFGGK 270


>sp|GUAA_PYRAE|GMP synthase [glutamine-hydrolyzing]|Pyrobaculum aerophilum (strain

Query: 5 FGGQY 9
FGGQY
Sbjct: 9 FGGQY 13


>sp|GUAA_AERPE|GMP synthase [glutamine-hydrolyzing]|Aeropyrum pernix (strain ATCC

Query: 5 FGGQY 9
FGGQY
Sbjct: 15 FGGQY 19


>sp|RTCA_SACS2|RNA 3'-terminal phosphate cyclase|Saccharolobus solfataricus (strain

Query: 4 LFGGQY 9
LFGG+Y
Sbjct: 293 LFGGEY 298


>sp|PGK_PICTO|PHOSPHOGLYCERATE kinase|Picrophilus torridus (strain ATCC 700027

Query: 4 LFGGQY 9
LFGG+Y
Sbjct: 406 LFGGKY 411


>sp|SRP54_HYPBU|SIGNAL recognition particle 54 kDa|Hyperthermus butylicus (strain DSM

Query: 4 LFGGQY 9
LFGG+Y
Sbjct: 83 LFGGEY 88




170|SequenceR|855|846|SLKILRSILF

>sp|Y666_METKA|UPF0305 protein MK0666|Methanopyrus kandleri (strain AV19 /

Query: 3 KILRSILF 10
KILRS+ F
Sbjct: 21 KILRSLFF 28




171|SequenceR|860|851|AFGEVSLKIL

>sp|RS3A_SACS2|SMALL ribosomal subunit protein eS1|Saccharolobus solfataricus (strain

Query: 1 AFGEVSL 7
AFGEVSL
Sbjct: 25 AFGEVSL 31


>sp|MALK_THELN|TREHALOSE/MALTOSE import ATP-binding protein MalK|Thermococcus litoralis (strain ATCC

Query: 2 FGEVSLKIL 10
FGE LK+L
Sbjct: 260 FGEFRLKLL 268




172|SequenceR|865|856|AMKDVAFGEV

>sp|SYI_METAR|ISOLEUCINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 AMKDVAFGEV 10
+MKD A GEV
Sbjct: 1061 SMKDYAAGEV 1070


>sp|ECFA2_METHJ|ENERGY-COUPLING factor transporter ATP-binding protein|Methanospirillum hungatei

Query: 3 KDVAFGEV 10
+DVAFG V
Sbjct: 101 QDVAFGPV 108


>sp|SYL_METKA|LEUCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 MKDVAFGEV 10
+KD FGEV
Sbjct: 843 LKDKEFGEV 851


>sp|THPR_METJA|RNA 2',3'-cyclic phosphodiesterase|Methanocaldococcus jannaschii

Query: 3 KDVAFGE 9
KDV FGE
Sbjct: 141 KDVDFGE 147


>sp|HPCAL_NITMS|3-HYDROXYPROPIONATE--COA ligase [ADP-forming]|Nitrosopumilus maritimus (strain SCM1)

Query: 2 MKDVAF 7
MKDVAF
Sbjct: 146 MKDVAF 151


>sp|CAS6B_METJA|CRISPR-ASSOCIATED endoribonuclease Cas6 2|Methanocaldococcus jannaschii (strain

Query: 2 MKDVAFGEV 10
+KD FGE+
Sbjct: 31 LKDTEFGEM 39


>sp|Y182_METKA|PUTATIVE ABC transporter ATP-binding protein|Methanopyrus kandleri (strain

Query: 2 MKDVAFGEV 10
++DVAFG V
Sbjct: 88 LEDVAFGLV 96


>sp|AATB_PYRAB|A-TYPE ATP synthase subunit B|Pyrococcus abyssi (strain GE5 /

Query: 1 AMKDVAFGEV 10
+K VA+GEV
Sbjct: 20 GVKGVAYGEV 29


>sp|AATB_THEGJ|A-TYPE ATP synthase subunit B|Thermococcus gammatolerans (strain DSM

Query: 1 AMKDVAFGEV 10
+K VA+GEV
Sbjct: 21 GVKGVAYGEV 30


>sp|AATB_PYRHO|A-TYPE ATP synthase subunit B|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 AMKDVAFGEV 10
+K VA+GEV
Sbjct: 23 GVKGVAYGEV 32


>sp|AATB_PYRFU|A-TYPE ATP synthase subunit B|Pyrococcus furiosus (strain ATCC 43587

Query: 1 AMKDVAFGEV 10
+K VA+GEV
Sbjct: 20 GVKGVAYGEV 29


>sp|AATB_DESSY|A-TYPE ATP synthase subunit B|Desulfurococcus sp. (strain SY)

Query: 1 AMKDVAFGEV 10
+K VA+GEV
Sbjct: 21 GVKGVAYGEV 30


>sp|AATB_THESI|A-TYPE ATP synthase subunit B|Thermococcus sp. (strain KI)

Query: 1 AMKDVAFGEV 10
+K VA+GEV
Sbjct: 21 GVKGVAYGEV 30


>sp|AATB_THEON|A-TYPE ATP synthase subunit B|Thermococcus onnurineus (strain NA1)

Query: 1 AMKDVAFGEV 10
+K VA+GEV
Sbjct: 23 GVKGVAYGEV 32


>sp|AATB_THEKO|A-TYPE ATP synthase subunit B|Thermococcus kodakarensis (strain ATCC

Query: 1 AMKDVAFGEV 10
+K VA+GEV
Sbjct: 23 GVKGVAYGEV 32


>sp|AATB_META3|A-TYPE ATP synthase subunit B|Methanococcus aeolicus (strain ATCC

Query: 1 AMKDVAFGEV 10
+K VA+GE+
Sbjct: 25 GIKGVAYGEI 34




173|SequenceR|870|861|AKVEGAMKDV

>sp|PCKA_AERPE|PHOSPHOENOLPYRUVATE carboxykinase (ATP)|Aeropyrum pernix (strain ATCC 700893

Query: 2 KVEGAMKDV 10
+VEG+M++V
Sbjct: 194 RVEGSMREV 202


>sp|Y3251_SACS2|UPF0282 protein SSO3251|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 AKVEGAMKDV 10
+ +EGA KDV
Sbjct: 175 SDIEGAPKDV 184


>sp|Y671_SACI1|UPF0282 protein YN1551_0671|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 AKVEGAMKDV 10
+ +EGA KDV
Sbjct: 175 SDIEGAPKDV 184


>sp|Y2281_SACI2|UPF0282 protein LS215_2281|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 AKVEGAMKDV 10
+ +EGA KDV
Sbjct: 175 SDIEGAPKDV 184


>sp|Y2245_SACI7|UPF0282 protein YG5714_2245|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 AKVEGAMKDV 10
+ +EGA KDV
Sbjct: 175 SDIEGAPKDV 184




174|SequenceR|875|866|HSEFFAKVEG

>sp|TRPA_METTM|TRYPTOPHAN synthase alpha chain|Methanothermobacter marburgensis (strain

Query: 1 HSEFFAKVEG 10
++E F++VEG
Sbjct: 3 YAEMFSRVEG 12


>sp|TRPB_THEGJ|TRYPTOPHAN synthase beta chain|Thermococcus gammatolerans (strain DSM 15229

Query: 2 SEFFAKVEG 10
+E FAK EG
Sbjct: 367 AELFAKTEG 375


>sp|URE1_HALMA|UREASE subunit alpha|Haloarcula marismortui (strain ATCC 43049

Query: 2 SEFFAKVE 9
+E FAKVE
Sbjct: 27 TELFAKVE 34


>sp|Y1348_PYRNV|UPF0173 metal-dependent hydrolase Tneu_1348|Pyrobaculum neutrophilum

Query: 1 HSEFFAKVEG 10
HS F +V+G
Sbjct: 8 HSAFMVEVQG 17


>sp|RS6E_METB6|SMALL ribosomal subunit protein eS6|Methanoregula boonei (strain DSM

Query: 3 EFFAKVEG 10
E F KVEG
Sbjct: 122 ELFPKVEG 129


>sp|RPO1N_METJA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanocaldococcus jannaschii (strain

Query: 1 HSEFFAKV 8
H EFF ++
Sbjct: 811 HKEFFGRI 818


>sp|Y281_PYRHO|UPF0113 protein PH0281|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 EFFAKVEG 10
EFF+ VEG
Sbjct: 39 EFFSIVEG 46


>sp|KPYK_AERPE|PYRUVATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 1 HSEFFAKVEG 10
+ FAK+EG
Sbjct: 206 QARIFAKIEG 215


>sp|RKD4_PYRCJ|ARCADIN-4 calidifontis (strain DSM 21063

Query: 3 EFFAKVE 9
EFFAKV+
Sbjct: 524 EFFAKVD 530




175|SequenceR|880|871|ASPAPHSEFF

>sp|RS4E_NANEQ|SMALL ribosomal subunit protein eS4|Nanoarchaeum equitans (strain

Query: 2 SPAPHSEFF 10
SP PHS+ F
Sbjct: 33 SPGPHSKEF 41


>sp|CARA_ARCFU|CARBAMOYL phosphate synthase small chain|Archaeoglobus fulgidus (strain ATCC

Query: 1 ASPAPHSEFF 10
A P PH +F
Sbjct: 336 AGPGPHDTYF 345


>sp|AGLUS_METJA|ARCHAEAL glutamate synthase [NADPH]|Methanocaldococcus jannaschii (strain

Query: 2 SPAPHSEFF 10
SPAPH + +
Sbjct: 286 SPAPHHDIY 294


>sp|DP2L_METST|DNA polymerase II large subunit|Methanosphaera stadtmanae (strain ATCC

Query: 3 PAPHSEF 9
PAPHS F
Sbjct: 611 PAPHSLF 617


>sp|RS4E_PYRIL|SMALL ribosomal subunit protein eS4|Pyrobaculum islandicum (strain DSM

Query: 1 ASPAPHS 7
+SP PHS
Sbjct: 27 SSPGPHS 33


>sp|PYLB_METAC|3-METHYLORNITHINE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 PAPHSEF 9
PAP +EF
Sbjct: 338 PAPQAEF 344


>sp|CARA_METVS|CARBAMOYL phosphate synthase small chain|Methanococcus vannielii (strain ATCC

Query: 1 ASPAPHSEFF 10
A P PH F
Sbjct: 340 AGPGPHDAMF 349


>sp|DP2L_METBU|DNA polymerase II large subunit|Methanococcoides burtonii (strain DSM

Query: 2 SPAPHSEF 9
+PAPH+ F
Sbjct: 609 TPAPHALF 616


>sp|Y966_METJA|UNCHARACTERIZED protein MJ0966|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PAPHSEF 9
P PH++F
Sbjct: 349 PKPHTDF 355


>sp|RL3_STAMF|LARGE ribosomal subunit protein uL3|Staphylothermus marinus (strain ATCC

Query: 3 PAPHSEF 9
P PHSE+
Sbjct: 170 PEPHSEY 176


>sp|RS4E_METS5|SMALL ribosomal subunit protein eS4|Metallosphaera sedula (strain ATCC

Query: 1 ASPAPH 6
ASP PH
Sbjct: 26 ASPGPH 31


>sp|RS4E_PYRAE|SMALL ribosomal subunit protein eS4|Pyrobaculum aerophilum (strain ATCC

Query: 2 SPAPHS 7
SP PHS
Sbjct: 28 SPGPHS 33


>sp|RS4E_METVS|SMALL ribosomal subunit protein eS4|Methanococcus vannielii (strain

Query: 2 SPAPHS 7
SP PHS
Sbjct: 33 SPGPHS 38


>sp|RS4E_METVA|SMALL ribosomal subunit protein eS4|Methanococcus vannielii

Query: 2 SPAPHS 7
SP PHS
Sbjct: 33 SPGPHS 38


>sp|RS4E_METMP|SMALL ribosomal subunit protein eS4|Methanococcus maripaludis (strain

Query: 2 SPAPHS 7
SP PHS
Sbjct: 33 SPGPHS 38


>sp|RS4E_METM7|SMALL ribosomal subunit protein eS4|Methanococcus maripaludis (strain

Query: 2 SPAPHS 7
SP PHS
Sbjct: 33 SPGPHS 38


>sp|RS4E_METM6|SMALL ribosomal subunit protein eS4|Methanococcus maripaludis (strain

Query: 2 SPAPHS 7
SP PHS
Sbjct: 33 SPGPHS 38


>sp|RS4E_METM5|SMALL ribosomal subunit protein eS4|Methanococcus maripaludis (strain

Query: 2 SPAPHS 7
SP PHS
Sbjct: 33 SPGPHS 38


>sp|RS2_IGNH4|SMALL ribosomal subunit protein uS2|Ignicoccus hospitalis (strain KIN4/I

Query: 3 PAPHSEF 9
PAP SEF
Sbjct: 199 PAPVSEF 205


>sp|RS4E_PYRAR|SMALL ribosomal subunit protein eS4|Pyrobaculum arsenaticum (strain DSM

Query: 2 SPAPHS 7
SP PHS
Sbjct: 28 SPGPHS 33


>sp|RS4E_PYRNV|SMALL ribosomal subunit protein eS4|Pyrobaculum neutrophilum (strain

Query: 2 SPAPHS 7
SP PHS
Sbjct: 28 SPGPHS 33


>sp|G3PP_METJA|GLYCERALDEHYDE 3-phosphate phosphatase|Methanocaldococcus jannaschii (strain ATCC

Query: 5 PHSEFF 10
PH EFF
Sbjct: 151 PHLEFF 156


>sp|NUOCD_HALVD|NADH-QUINONE oxidoreductase subunit C/D|Haloferax volcanii (strain ATCC 29605

Query: 3 PAPHSEFF 10
P P EFF
Sbjct: 347 PEPREEFF 354


>sp|CARA_THEAC|CARBAMOYL phosphate synthase small chain|Thermoplasma acidophilum (strain

Query: 1 ASPAPH 6
ASP PH
Sbjct: 324 ASPGPH 329


>sp|Y2319_HALLT|UPF0179 protein Hlac_2319|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 ASPAPHSE 8
A P PH+E
Sbjct: 94 AGPCPHTE 101


>sp|CARA_THEVO|CARBAMOYL phosphate synthase small chain|Thermoplasma volcanium (strain ATCC

Query: 1 ASPAPH 6
ASP PH
Sbjct: 324 ASPGPH 329


>sp|PT1_HALVD|PHOSPHOENOLPYRUVATE-PROTEIN phosphotransferase|Haloferax volcanii (strain ATCC 29605

Query: 4 APHSEFF 10
APH +FF
Sbjct: 439 APHVDFF 445


>sp|RS4E_THEKO|SMALL ribosomal subunit protein eS4|Thermococcus kodakarensis (strain

Query: 2 SPAPHS 7
SP PHS
Sbjct: 33 SPGPHS 38


>sp|FEN_METB6|FLAP endonuclease 1|Methanoregula boonei (strain DSM 21154

Query: 3 PAPHSEFF 10
PAP ++FF
Sbjct: 270 PAPVADFF 277


>sp|Y3004_HALS3|UPF0179 protein OE_3004R|Halobacterium salinarum (strain ATCC 29341

Query: 1 ASPAPHSE 8
A P PH+E
Sbjct: 93 AGPCPHTE 100


>sp|Y1401_HALSA|UPF0179 protein VNG_1401C|Halobacterium salinarum (strain ATCC 700922

Query: 1 ASPAPHSE 8
A P PH+E
Sbjct: 93 AGPCPHTE 100


>sp|TRPB2_METTH|TRYPTOPHAN synthase beta chain 2|Methanothermobacter thermautotrophicus

Query: 2 SPAPHSEF 9
SP+ H+EF
Sbjct: 182 SPSNHTEF 189




176|SequenceR|885|876|QITREASPAP

>sp|DAPA_METST|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 5 EASPAP 10
EASPAP
Sbjct: 252 EASPAP 257




177|SequenceR|890|881|NECCQQITRE

>sp|FWDC_METMP|TUNGSTEN-CONTAINING formylmethanofuran dehydrogenase 2 subunit|Methanococcus

Query: 1 NECCQQITR 9
N CC+++ R
Sbjct: 67 NNCCKKVKR 75


>sp|FWDC_METMI|TUNGSTEN-CONTAINING formylmethanofuran dehydrogenase 2 subunit|Methanococcus

Query: 1 NECCQQITR 9
N CC+++ R
Sbjct: 67 NNCCKKVKR 75


>sp|NIFK_METBA|NITROGENASE molybdenum-iron protein beta chain|Methanosarcina barkeri

Query: 4 CQQITRE 10
C+++TRE
Sbjct: 7 CEEVTRE 13




178|SequenceR|895|886|ANLLINECCQ

>sp|SYS2_METVS|TYPE-2 serine--tRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 NLLINECCQ 10
NL+I EC Q
Sbjct: 229 NLIIEECIQ 237


>sp|THIL_METJA|THIAMINE-MONOPHOSPHATE kinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 NLLINECC 9
N LIN CC
Sbjct: 210 NKLINGCC 217


>sp|PYRE_PYRHO|OROTATE phosphoribosyltransferase|Pyrococcus horikoshii (strain ATCC

Query: 2 NLLINECC 9
NL+INE C
Sbjct: 9 NLIINEGC 16


>sp|RL10E_METAR|LARGE ribosomal subunit protein uL16|Methanocella arvoryzae (strain DSM

Query: 3 LLINECCQ 10
L++NE CQ
Sbjct: 49 LVVNETCQ 56


>sp|Y1281_METJA|UNCHARACTERIZED protein MJ1281|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ANLLINE 7
AN+LINE
Sbjct: 157 ANMLINE 163


>sp|Y1852_ARCFU|UNCHARACTERIZED protein AF_1852|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ANLLINE 7
ANL+INE
Sbjct: 51 ANLIINE 57


>sp|SYH_METM7|HISTIDINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 ANLLINEC 8
+++L+NEC
Sbjct: 339 SDMLLNEC 346


>sp|SYH_METM6|HISTIDINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 1 ANLLINEC 8
+++L+NEC
Sbjct: 339 SDMLLNEC 346


>sp|SYH_METM5|HISTIDINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 1 ANLLINEC 8
+++L+NEC
Sbjct: 339 SDMLLNEC 346


>sp|GATB_SACS2|ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) amidotransferase subunit B|Saccharolobus solfataricus (strain ATCC

Query: 1 ANLLINE 7
ANLLIN+
Sbjct: 339 ANLLIND 345




179|SequenceR|900|891|RKLWAANLLI

>sp|Y2205_ARCFU|UNCHARACTERIZED protein AF_2205|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 RKLWAANLLI 10
R +WA+N+ I
Sbjct: 421 RSVWASNVSI 430


>sp|SYV_METJA|VALINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KLWAANLLI 10
+LWA+N ++
Sbjct: 551 RLWASNSVV 559




180|SequenceR|905|896|ISEADRKLWA

>sp|Y420_METJA|UNCHARACTERIZED protein MJ0420|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ISEADRKLWA 10
I E D+KL+A
Sbjct: 327 IYEGDKKLYA 336


>sp|KCY_METHJ|CYTIDYLATE kinase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 ISEADRKLW 9
I EAD K+W
Sbjct: 88 IQEADLKIW 96


>sp|KCY_METS3|CYTIDYLATE kinase|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 EADRKLW 9
EAD KLW
Sbjct: 89 EADLKLW 95


>sp|KCY_THESM|CYTIDYLATE kinase|Thermococcus sibiricus (strain DSM 12597

Query: 1 ISEADRKLW 9
+ EAD K+W
Sbjct: 92 VKEADLKVW 100




181|SequenceR|910|901|LLYQHISEAD

>sp|IF6_SULAC|TRANSLATION initiation factor 6|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 LLYQHISEAD 10
L+YQ +SEA+
Sbjct: 114 LIYQDLSEAE 123


>sp|MTAP_THEAC|S-METHYL-5'-THIOADENOSINE phosphorylase|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 HISEAD 10
HISEAD
Sbjct: 126 HISEAD 131


>sp|CDPAS_PYRIL|CDP-ARCHAEOL synthase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 LLYQHISEAD 10
LLY+H+S D
Sbjct: 70 LLYKHLSLLD 79


>sp|RFCL_NATPD|REPLICATION factor C large subunit|Natronomonas pharaonis (strain ATCC 35678

Query: 3 YQHISEAD 10
Y+H+++AD
Sbjct: 274 YEHLADAD 281


>sp|BIOA_METJA|ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE aminotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LYQHISEAD 10
LY+ I EAD
Sbjct: 452 LYEAIKEAD 460


>sp|PYRF_HALSA|OROTIDINE 5'-phosphate decarboxylase|Halobacterium salinarum (strain ATCC

Query: 2 LYQHISE 8
LY+H++E
Sbjct: 162 LYEHVAE 168


>sp|PYRF_HALS3|OROTIDINE 5'-phosphate decarboxylase|Halobacterium salinarum (strain ATCC

Query: 2 LYQHISE 8
LY+H++E
Sbjct: 162 LYEHVAE 168




182|SequenceR|919|906|VTPPSAKRQLLYQH

>sp|TIAS_METV3|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Methanococcus voltae (strain

Query: 3 PPSAKRQL 10
PPSA+R L
Sbjct: 486 PPSARRHL 493


>sp|TIAS_ARCFU|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Archaeoglobus fulgidus (strain

Query: 3 PPSAKRQL 10
PPSA+R L
Sbjct: 397 PPSARRHL 404


>sp|PXPA_THEON|5-OXOPROLINASE subunit A|Thermococcus onnurineus (strain NA1)

Query: 1 VTPPSAKRQLLYQ 13
+TP A+ +LYQ
Sbjct: 78 LTPEEARNYILYQ 90


>sp|PXPA_PYRHO|5-OXOPROLINASE subunit A|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 VTPPSAKRQLLYQ 13
+TP A+ +LYQ
Sbjct: 78 LTPEEARNYILYQ 90


>sp|PXPA_PYRFU|5-OXOPROLINASE subunit A|Pyrococcus furiosus (strain ATCC 43587

Query: 1 VTPPSAKRQLLYQ 13
+TP A+ +LYQ
Sbjct: 78 LTPEEARNYILYQ 90


>sp|PXPA_PYRAB|5-OXOPROLINASE subunit A|Pyrococcus abyssi (strain GE5 /

Query: 1 VTPPSAKRQLLYQ 13
+TP A+ +LYQ
Sbjct: 78 LTPEEARNYILYQ 90


>sp|GCS2_HALLT|GLUTAMATE--CYSTEINE ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 TPPSAKRQLL 11
+PP+ +R+LL
Sbjct: 274 SPPTLRRELL 283


>sp|GUAAB_METAR|GMP synthase [glutamine-hydrolyzing] subunit B|Methanocella arvoryzae

Query: 1 VTPPSAKRQLL 11
VT P AKR+++
Sbjct: 92 VTDPEAKRKIV 102


>sp|THYX_SACS2|FLAVIN-DEPENDENT thymidylate synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 VTPPSAKRQ 9
+ PPSAK++
Sbjct: 104 IIPPSAKKR 112


>sp|Y038_METJA|UNCHARACTERIZED protein MJ0038|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 PSAKRQLLY 12
P+AK +LLY
Sbjct: 99 PTAKSELLY 107


>sp|THYX_HALMA|FLAVIN-DEPENDENT thymidylate synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 VTPPSA 6
VTPPSA
Sbjct: 119 VTPPSA 124


>sp|Y020_SULAC|UPF0284 protein Saci_0020|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 VTPPSAKRQLLYQ 13
V P KR+++Y+
Sbjct: 182 VNPKDLKRKVVYE 194


>sp|THYX_HALSA|FLAVIN-DEPENDENT thymidylate synthase|Halobacterium salinarum (strain ATCC 700922

Query: 1 VTPPSA 6
VTPPSA
Sbjct: 119 VTPPSA 124




THE END