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1|Sequence|1|10|MAGVSFSGHR

>sp|POL_XMRV6|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP62)

Query: 2    AGVSFSGHR 10
            AGV   GHR
Sbjct: 1437 AGVRVRGHR 1445


>sp|POL_XMRV4|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP42)

Query: 2    AGVSFSGHR 10
            AGV   GHR
Sbjct: 1437 AGVRVRGHR 1445


>sp|POL_XMRV3|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP35)

Query: 2    AGVSFSGHR 10
            AGV   GHR
Sbjct: 1437 AGVRVRGHR 1445


>sp|OBP_VZVD|REPLICATION origin-binding protein|Varicella-zoster virus (strain Dumas)

Query: 2   AGVSFSG 8
           AGV FSG
Sbjct: 222 AGVGFSG 228


>sp|OBP_VZVO|REPLICATION origin-binding protein|Varicella-zoster virus (strain Oka vaccine)

Query: 2   AGVSFSG 8
           AGV FSG
Sbjct: 222 AGVGFSG 228


>sp|HEMA_I68A5|HEMAGGLUTININ A virus (strain A/Korea/426/1968

Query: 1   MAGVSF 6
           MAG+SF
Sbjct: 543 MAGISF 548


>sp|HEMA_I57A5|HEMAGGLUTININ A virus (strain A/Singapore/1/1957

Query: 1   MAGVSF 6
           MAG+SF
Sbjct: 543 MAGISF 548


>sp|HEMA_I57A0|HEMAGGLUTININ A virus (strain A/Japan/305/1957

Query: 1   MAGVSF 6
           MAG+SF
Sbjct: 543 MAGISF 548


>sp|CEP3_HHV1K|CYTOPLASMIC envelopment protein 3|Human herpesvirus 1 (strain KOS)

Query: 3  GVSFSGHR 10
          G+SFSG R
Sbjct: 2  GLSFSGAR 9


>sp|CEP3_HHV11|CYTOPLASMIC envelopment protein 3|Human herpesvirus 1 (strain 17)

Query: 3  GVSFSGHR 10
          G+SFSG R
Sbjct: 2  GLSFSGAR 9


>sp|POLG_ILHV|GENOME polyprotein|Ilheus virus (ILHV)

Query: 1   MAGVSFSGHR 10
           +AG+  S HR
Sbjct: 116 VAGLKISSHR 125




2|Sequence|6|15|FSGHRLELLA

>sp|DPOL_HBVD1|PROTEIN P|Hepatitis B virus genotype D

Query: 2   SGHRLEL 8
           SGH LEL
Sbjct: 287 SGHALEL 293




3|Sequence|11|20|LELLAAYEEV

>sp|NCAP_PI4HB|NUCLEOPROTEIN parainfluenza 4b virus (strain

Query: 3  LLAAYEE 9
          +LAAYE+
Sbjct: 4  VLAAYEQ 10


>sp|NCAP_PI4HA|NUCLEOPROTEIN parainfluenza 4a virus (strain

Query: 3  LLAAYEE 9
          +LAAYE+
Sbjct: 4  VLAAYEQ 10




4|Sequence|16|25|AYEEVIREES

>sp|VL2_HPV31|MINOR capsid protein L2|Human papillomavirus 31

Query: 1   AYEEVIREES 10
           AYE V  EES
Sbjct: 251 AYETVNAEES 260


>sp|HELI_HHV11|DNA replication helicase|Human herpesvirus 1 (strain 17)

Query: 1   AYEEVIREES 10
           A+E V+R++S
Sbjct: 519 AFEAVLRDDS 528


>sp|TEG1_VZVO|TEGUMENT protein UL46 homolog|Varicella-zoster virus (strain Oka vaccine)

Query: 2   YEEVIREES 10
           YE  +R+ES
Sbjct: 566 YEGPVRDES 574


>sp|TEG1_VZVD|TEGUMENT protein UL46 homolog|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2   YEEVIREES 10
           YE  +R+ES
Sbjct: 566 YEGPVRDES 574




5|Sequence|21|30|IREESAADWA

>sp|A40_VACCC|PROTEIN A40|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1  IREESAADW 9
          IRE+   DW
Sbjct: 52 IREDCPTDW 60


>sp|L_MACHU|RNA-DIRECTED RNA polymerase L|Machupo virus (MACV)

Query: 1    IREESAADW 9
            IR+ S  DW
Sbjct: 1813 IRQSSYTDW 1821


>sp|NCAP_ISFV|NUCLEOPROTEIN virus (ISFV)

Query: 2  REESAADW 9
          R+E+ +DW
Sbjct: 82 RDEAQSDW 89


>sp|POLG_USUV|GENOME polyprotein|Usutu virus (USUV)

Query: 1    IREESAADW 9
            ++EE AA W
Sbjct: 2815 LKEEYAATW 2823


>sp|POLG_MVEV5|GENOME polyprotein|Murray valley encephalitis virus (strain

Query: 1    IREESAADW 9
            ++EE AA W
Sbjct: 2815 LKEEYAATW 2823


>sp|US22_HCMVA|EARLY nuclear protein HWLF1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 4   ESAADW 9
           ESA DW
Sbjct: 375 ESALDW 380


>sp|US22_HCMVM|TEGUMENT protein US22|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 4   ESAADW 9
           ESA DW
Sbjct: 375 ESALDW 380




6|Sequence|26|35|AADWALYTYE

>sp|VP2_POVWU|MINOR capsid protein VP2|WU polyomavirus (WUPyV)

Query: 1   AADWALYTYE 10
           A DW LY  E
Sbjct: 336 APDWILYVLE 345


>sp|VP2_POVKI|MINOR capsid protein VP2|KI polyomavirus (isolate Stockholm 350)

Query: 3   DWALYTYE 10
           DW LY  E
Sbjct: 327 DWILYVLE 334


>sp|VP2_POVK6|MINOR capsid protein VP2|KI polyomavirus (isolate Stockholm 60)

Query: 3   DWALYTYE 10
           DW LY  E
Sbjct: 327 DWILYVLE 334


>sp|VP2_POVK3|MINOR capsid protein VP2|KI polyomavirus (isolate Stockholm 380)

Query: 3   DWALYTYE 10
           DW LY  E
Sbjct: 327 DWILYVLE 334


>sp|GLYCO_LBV|GLYCOPROTEIN bat virus (LBV)

Query: 3   DWALY 7
           DW+LY
Sbjct: 455 DWSLY 459


>sp|UL40_HCMVM|PROTEIN UL40|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 4   WALYT 8
           WA+YT
Sbjct: 183 WAMYT 187


>sp|UL40_HCMVA|PROTEIN UL40|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 4   WALYT 8
           WA+YT
Sbjct: 183 WAMYT 187


>sp|VL3_HPV5B|PROBABLE protein L3|Human papillomavirus type 5b

Query: 4  WALYT 8
          W+LYT
Sbjct: 34 WSLYT 38


>sp|L_CHAV|RNA-DIRECTED RNA polymerase L|Chandipura virus (strain I653514) (CHPV)

Query: 2  ADWALYT 8
          A+W LY+
Sbjct: 93 AEWMLYS 99


>sp|V55B_HHV7J|UNCHARACTERIZED protein U55B|Human herpesvirus 7 (strain JI)

Query: 3   DWALYTYE 10
           +W L TY+
Sbjct: 148 EWKLSTYQ 155


>sp|UL119_HCMVA|VIRAL Fc-gamma receptor-like protein UL119|Human cytomegalovirus (strain

Query: 2   ADWALYTY 9
           A W L+TY
Sbjct: 180 ATWDLFTY 187


>sp|NEF_HV2RO|PROTEIN Nef|Human immunodeficiency virus type 2

Query: 2   ADWALYTY 9
           ADW  YT+
Sbjct: 154 ADWQNYTH 161


>sp|UL119_HCMVM|VIRAL Fc-gamma receptor-like protein UL119|Human cytomegalovirus (strain

Query: 2   ADWALYTY 9
           A W L+TY
Sbjct: 180 ATWDLFTY 187


>sp|GB_EBVB9|ENVELOPE glycoprotein B|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   AADWALYTY 9
           A  W ++TY
Sbjct: 190 APGWLIWTY 198


>sp|GB_EBVG|ENVELOPE glycoprotein B|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   AADWALYTY 9
           A  W ++TY
Sbjct: 190 APGWLIWTY 198


>sp|GB_EBVA8|ENVELOPE glycoprotein B|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   AADWALYTY 9
           A  W ++TY
Sbjct: 190 APGWLIWTY 198


>sp|NRAM_I96A3|NEURAMINIDASE A virus (strain A/China:Nanchang/11/1996

Query: 4   WALYT 8
           WA+YT
Sbjct: 97  WAIYT 101


>sp|NRAM_I06A0|NEURAMINIDASE A virus (strain A/Russia:St.Petersburg/8/2006

Query: 4   WALYT 8
           WA+YT
Sbjct: 97  WAIYT 101


>sp|NRAM_I00A1|NEURAMINIDASE A virus (strain A/New

Query: 4   WALYT 8
           WA+YT
Sbjct: 97  WAIYT 101


>sp|NRAM_I07A0|NEURAMINIDASE A virus (strain A/USA:Texas/UR06-0195/2007

Query: 4   WALYT 8
           WA+YT
Sbjct: 97  WAIYT 101


>sp|NRAM_I96A2|NEURAMINIDASE A virus (strain A/USA:Memphis/10/1996

Query: 4   WALYT 8
           WA+YT
Sbjct: 97  WAIYT 101




7|Sequence|31|40|LYTYEDGSDD

>sp|POLN_HEVUS|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 3

Query: 1   LYTYEDGS 8
           LYTY DG+
Sbjct: 796 LYTYPDGA 803


>sp|POLN_HEVMG|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 3

Query: 1   LYTYEDGS 8
           LYTY DG+
Sbjct: 796 LYTYPDGA 803


>sp|POLN_HEVPA|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 1   LYTYEDGS 8
           L+TY DGS
Sbjct: 781 LFTYPDGS 788


>sp|POLN_HEVMY|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 1   LYTYEDGS 8
           L+TY DGS
Sbjct: 781 LFTYPDGS 788


>sp|POLN_HEVHY|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 1   LYTYEDGS 8
           L+TY DGS
Sbjct: 781 LFTYPDGS 788


>sp|POLN_HEVCH|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 1   LYTYEDGS 8
           L+TY DGS
Sbjct: 781 LFTYPDGS 788


>sp|POLN_HEVBU|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 1   LYTYEDGS 8
           L+TY DGS
Sbjct: 781 LFTYPDGS 788


>sp|POLN_HEVCT|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 4

Query: 1   LYTYEDGS 8
           L+TY DGS
Sbjct: 795 LHTYPDGS 802


>sp|POLN_HEVME|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 2

Query: 1   LYTYEDGS 8
           L+TY DG+
Sbjct: 779 LHTYPDGA 786


>sp|BRRF2_EBVG|TEGUMENT protein BRRF2|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 5   EDGSDD 10
           EDGS+D
Sbjct: 495 EDGSED 500


>sp|BRRF2_EBVB9|TEGUMENT protein BRRF2|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 5   EDGSDD 10
           EDGS+D
Sbjct: 495 EDGSED 500


>sp|BRRF2_EBVA8|TEGUMENT protein BRRF2|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 5   EDGSDD 10
           EDGS+D
Sbjct: 495 EDGSED 500


>sp|MIR1_HHV8P|E3 ubiquitin-protein ligase MIR1|Human herpesvirus 8 type P

Query: 3   TYEDGSDD 10
           T+ DG DD
Sbjct: 244 THNDGRDD 251


>sp|VP3_ROTHD|PROTEIN VP3|Rotavirus A (strain RVA/Human/United

Query: 1  LYTYEDGSDD 10
          +YT++D  DD
Sbjct: 19 VYTHDDSKDD 28


>sp|VP5_CTFVL|UNCHARACTERIZED protein VP5|Colorado tick fever virus (strain

Query: 2  YTYEDGSDD 10
          Y  E G+DD
Sbjct: 79 YVGEQGNDD 87


>sp|VL2_HPV03|MINOR capsid protein L2|Human papillomavirus 3

Query: 2   YTYEDGSD 9
           Y Y DG D
Sbjct: 436 YVYIDGGD 443


>sp|C8_VACCC|PROTEIN C8|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1  LYTYED 6
          +YTYED
Sbjct: 37 IYTYED 42


>sp|VL2_HPV28|MINOR capsid protein L2|Human papillomavirus 28

Query: 2   YTYEDGSD 9
           Y Y DG D
Sbjct: 436 YVYIDGGD 443


>sp|SPIK1_ADE41|FIBER protein 1|Human adenovirus F serotype 41

Query: 1   LYTYEDGS 8
           +Y Y DG+
Sbjct: 444 MYFYSDGT 451


>sp|POLG_HCVGL|GENOME polyprotein|Hepatitis C virus (isolate Glasgow)

Query: 3   TYEDGSDD 10
           TY  G+DD
Sbjct: 526 TYSWGADD 533


>sp|SPIK1_ADE40|FIBER protein 1|Human adenovirus F serotype 40

Query: 1   LYTYEDGS 8
           +Y Y DG+
Sbjct: 429 MYFYSDGT 436




8|Sequence|36|45|DGSDDLKLAA

>sp|L_PIV5W|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain 21004-WR)

Query: 1   DGSDDLKLAA 10
           D SDD +LAA
Sbjct: 648 DPSDDFELAA 657


>sp|L_PIV5|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain W3)

Query: 1   DGSDDLKLAA 10
           D SDD +LAA
Sbjct: 648 DPSDDFELAA 657


>sp|UL141_HCMVM|PROTEIN UL141|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1  DGSDDLKLAA 10
          DGSD+L L A
Sbjct: 88 DGSDELILDA 97


>sp|VP2_ROTHW|INNER capsid protein VP2|Rotavirus A (strain RVA/Human/United

Query: 1  DGSDDLKLAA 10
          D  DD+K+A 
Sbjct: 58 DAQDDIKIAG 67


>sp|VP2_ROTAD|INNER capsid protein VP2|Rotavirus A (strain RVA/Human/United

Query: 1  DGSDDLKLAA 10
          D  DD+K+A 
Sbjct: 58 DAQDDIKIAG 67


>sp|VU3_HHV7J|PROTEIN U3|Human herpesvirus 7 (strain JI)

Query: 1  DGSDDLKLA 9
          DG  DLK+A
Sbjct: 37 DGKKDLKVA 45


>sp|POLN_WEEV|POLYPROTEIN P1234|Western equine encephalitis virus (WEEV)

Query: 5    DLKLAA 10
            DLKLAA
Sbjct: 1408 DLKLAA 1413


>sp|FUS_HMPVC|FUSION glycoprotein F0|Human metapneumovirus (strain CAN97-83) (HMPV)

Query: 4   DDLKLA 9
           DDLK+A
Sbjct: 185 DDLKMA 190


>sp|VP2_ROTYO|INNER capsid protein VP2|Rotavirus A (strain

Query: 1  DGSDDLKLA 9
          D  DD+K+A
Sbjct: 58 DVQDDIKIA 66


>sp|VP2_ROTHT|INNER capsid protein VP2|Rotavirus A (strain RVA/Human/United

Query: 1  DGSDDLKLA 9
          D  DD+K+A
Sbjct: 58 DVQDDIKIA 66


>sp|VP2_ROTHK|INNER capsid protein VP2|Rotavirus A (strain

Query: 1  DGSDDLKLA 9
          D  DD+K+A
Sbjct: 60 DVQDDIKIA 68


>sp|VP2_ROTHP|INNER capsid protein VP2|Rotavirus A (strain RVA/Human/United

Query: 1  DGSDDLKLA 9
          D  DD+K+A
Sbjct: 64 DVQDDIKIA 72


>sp|V_NIPAV|NON-STRUCTURAL protein V|Nipah virus

Query: 1   DGSDDLKL 8
           +GSDD++L
Sbjct: 100 EGSDDIQL 107


>sp|L_TULV|RNA-DIRECTED RNA polymerase L|Tula orthohantavirus (TULV) (Tula virus)

Query: 1    DGSDDL 6
            DG DDL
Sbjct: 1028 DGMDDL 1033


>sp|POL_HV1MV|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 2  GSDDLK 7
          GS+DLK
Sbjct: 71 GSEDLK 76


>sp|GAG_HV1MV|GAG polyprotein|Human immunodeficiency virus type 1

Query: 2  GSDDLK 7
          GS+DLK
Sbjct: 71 GSEDLK 76




9|Sequence|41|50|LKLAASGEGG

>sp|VL2_HPV24|MINOR capsid protein L2|Human papillomavirus 24

Query: 3   LAASGEGG 10
           + ASG GG
Sbjct: 207 IVASGAGG 214




10|Sequence|46|55|SGEGGLQELS

>sp|VP4_ROTGA|OUTER capsid protein VP4|Rotavirus B (isolate RVB/Human/China/ADRV/1982)

Query: 1   SGEGGLQE 8
           SG+ GLQ+
Sbjct: 285 SGKAGLQQ 292


>sp|L_CCHFI|RNA-DIRECTED RNA polymerase L|Crimean-Congo hemorrhagic fever virus (strain

Query: 3    EGGLQELS 10
            E GL+ELS
Sbjct: 3033 EDGLRELS 3040


Query: 4    GGLQELS 10
            GG++ELS
Sbjct: 2939 GGIKELS 2945


>sp|L_DUGBA|RNA-DIRECTED RNA polymerase L|Dugbe virus (isolate ArD44313) (DUGV)

Query: 4    GGLQELS 10
            GG++ELS
Sbjct: 3027 GGIKELS 3033


>sp|DPOL_HCMVM|DNA polymerase catalytic subunit|Human cytomegalovirus (strain Merlin)

Query: 1   SGEGGL 6
           SGEGG 
Sbjct: 306 SGEGGF 311


>sp|DPOL_HCMVA|DNA polymerase catalytic subunit|Human cytomegalovirus (strain AD169)

Query: 1   SGEGGL 6
           SGEGG 
Sbjct: 306 SGEGGF 311




11|Sequence|51|60|LQELSGHFEN

>sp|RP147_VACCA|DNA-DIRECTED RNA polymerase 147 kDa|Vaccinia virus (strain Ankara) (VACV)

Query: 1   LQELSGH 7
           L+ELSGH
Sbjct: 108 LKELSGH 114


>sp|RP147_VACCC|DNA-DIRECTED RNA polymerase 147 kDa|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1   LQELSGH 7
           L+ELSGH
Sbjct: 108 LKELSGH 114


>sp|RP147_VARV|DNA-DIRECTED RNA polymerase 147 kDa|Variola virus

Query: 1   LQELSGH 7
           L+ELSGH
Sbjct: 108 LKELSGH 114


>sp|RP147_VAR67|DNA-DIRECTED RNA polymerase 147 kDa|Variola virus (isolate

Query: 1   LQELSGH 7
           L+ELSGH
Sbjct: 108 LKELSGH 114


>sp|L_ABLVB|LARGE structural protein|Australian bat lyssavirus (isolate Bat/AUS/1996)

Query: 4    LSGHFEN 10
            L GHFE+
Sbjct: 1365 LPGHFES 1371


>sp|UL32_HHV8P|PACKAGING protein UL32 homolog|Human herpesvirus 8 type P

Query: 3   ELSGHFEN 10
           E+ GH EN
Sbjct: 318 EVMGHIEN 325


>sp|DPOL_HBVF4|PROTEIN P|Hepatitis B virus genotype F2

Query: 1   LQELSGHFEN 10
           LQ+  GH  N
Sbjct: 225 LQQKQGHLAN 234


>sp|LTP_HHV6Z|LARGE tegument protein deneddylase|Human herpesvirus 6B (strain Z29)

Query: 1    LQELSGHF 8
            LQEL  HF
Sbjct: 1202 LQELLNHF 1209


>sp|LTP_HHV6U|LARGE tegument protein deneddylase|Human herpesvirus 6A (strain

Query: 1    LQELSGHF 8
            LQEL  HF
Sbjct: 1202 LQELLNHF 1209


>sp|LTP_HHV6G|LARGE tegument protein deneddylase|Human herpesvirus 6A (strain GS)

Query: 1    LQELSGHF 8
            LQEL  HF
Sbjct: 1202 LQELLNHF 1209


>sp|VL2_HPV62|MINOR capsid protein L2|Human papillomavirus 62

Query: 3   ELSGH 7
           ELSGH
Sbjct: 175 ELSGH 179


>sp|L_DOBV|RNA-DIRECTED RNA polymerase L|Dobrava-Belgrade orthohantavirus (DOBV) (Dobrava

Query: 2   QELSGHF 8
           QEL  HF
Sbjct: 137 QELHNHF 143




12|Sequence|56|65|GHFENQKVMY

>sp|GAG_HV1B1|GAG polyprotein|Human immunodeficiency virus type 1

Query: 1   GHFENQKVM 9
           G+F NQ+ M
Sbjct: 381 GNFRNQRKM 389


>sp|POL_HV1B1|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   GHFENQKVM 9
           G+F NQ+ M
Sbjct: 381 GNFRNQRKM 389


>sp|R1A_CVHN2|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N2)

Query: 2    HFENQKVMY 10
            HF N K ++
Sbjct: 2215 HFTNDKTIF 2223


>sp|R1A_CVHN1|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N1)

Query: 2    HFENQKVMY 10
            HF N K ++
Sbjct: 2245 HFTNDKTIF 2253


>sp|R1A_CVHN5|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N5)

Query: 2    HFENQKVMY 10
            HF N K ++
Sbjct: 2195 HFTNDKTIF 2203


>sp|US21_HCMVM|MEMBRANE protein US21|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2   HFENQKVMY 10
           HF ++ V+Y
Sbjct: 99  HFSHRSVIY 107


>sp|US21_HCMVA|UNCHARACTERIZED protein HWLF2|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   HFENQKVMY 10
           HF ++ V+Y
Sbjct: 99  HFSHRSVIY 107


>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)

Query: 2    HFENQKVMY 10
            HF N K ++
Sbjct: 2215 HFTNDKTIF 2223


>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)

Query: 2    HFENQKVMY 10
            HF N K ++
Sbjct: 2245 HFTNDKTIF 2253


>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)

Query: 2    HFENQKVMY 10
            HF N K ++
Sbjct: 2195 HFTNDKTIF 2203


>sp|POL_HV1OY|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   GHFENQK 7
           G+F+NQ+
Sbjct: 380 GNFKNQR 386


>sp|GAG_HV1OY|GAG polyprotein|Human immunodeficiency virus type 1

Query: 1   GHFENQK 7
           G+F+NQ+
Sbjct: 380 GNFKNQR 386


>sp|VC21_VACCC|PROTEIN C21/B27|Vaccinia virus (strain Copenhagen) (VACV)

Query: 3  FENQKVMY 10
          FEN+ ++Y
Sbjct: 22 FENRNIIY 29


>sp|VU55_HHV6U|UNCHARACTERIZED protein U55|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   GHFENQKVM 9
           G F N+K++
Sbjct: 296 GEFTNKKIV 304


>sp|PG077_VACCT|TELOMERE-BINDING protein OPG077|Vaccinia virus (strain Tian Tan)

Query: 2   HFENQKV 8
           H EN K+
Sbjct: 150 HLENDKI 156


>sp|PG077_VACCC|TELOMERE-BINDING protein OPG077|Vaccinia virus (strain Copenhagen) (VACV)

Query: 2   HFENQKV 8
           H EN K+
Sbjct: 150 HLENDKI 156


>sp|PG077_VACCA|TELOMERE-BINDING protein OPG077|Vaccinia virus (strain Ankara) (VACV)

Query: 2   HFENQKV 8
           H EN K+
Sbjct: 150 HLENDKI 156


>sp|PG077_MONPZ|TELOMERE-BINDING protein OPG077|Monkeypox virus (strain Zaire-96-I-16) (MPXV)

Query: 2   HFENQKV 8
           H EN K+
Sbjct: 150 HLENDKI 156


>sp|PG077_MONPV|TELOMERE-BINDING protein OPG077|Monkeypox virus (MPXV)

Query: 2   HFENQKV 8
           H EN K+
Sbjct: 150 HLENDKI 156


>sp|PG077_VAR67|TELOMERE-BINDING protein OPG077|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 2   HFENQKV 8
           H EN K+
Sbjct: 150 HLENDKI 156


>sp|PG077_VACCP|TELOMERE-BINDING protein OPG077|Vaccinia virus (strain L-IVP) (VACV)

Query: 2   HFENQKV 8
           H EN K+
Sbjct: 150 HLENDKI 156




13|Sequence|61|70|QKVMYGFCSV

>sp|PG083_VACCC|CORE protease OPG082|Vaccinia virus (strain Copenhagen) (VACV)

Query: 3   VMYGFC 8
           VM+GFC
Sbjct: 232 VMFGFC 237


>sp|PG083_VARV|CORE protease OPG082|Variola virus

Query: 3   VMYGFC 8
           VM+GFC
Sbjct: 232 VMFGFC 237


>sp|PG083_VAR67|CORE protease OPG082|Variola virus (isolate Human/India/Ind3/1967)

Query: 3   VMYGFC 8
           VM+GFC
Sbjct: 232 VMFGFC 237


>sp|POLG_DEN4T|GENOME polyprotein|Dengue virus type 4 (strain

Query: 3   VMYGFCS 9
           VMYG C+
Sbjct: 188 VMYGTCT 194


>sp|POLG_DEN4S|GENOME polyprotein|Dengue virus type 4 (strain

Query: 3   VMYGFCS 9
           VMYG C+
Sbjct: 188 VMYGTCT 194


>sp|POLG_DEN4P|GENOME polyprotein|Dengue virus type 4 (strain

Query: 3   VMYGFCS 9
           VMYG C+
Sbjct: 188 VMYGTCT 194


>sp|POLG_DEN4H|GENOME polyprotein|Dengue virus type 4 (strain

Query: 3   VMYGFCS 9
           VMYG C+
Sbjct: 188 VMYGTCT 194


>sp|POLG_DEN4D|GENOME polyprotein|Dengue virus type 4 (strain

Query: 3   VMYGFCS 9
           VMYG C+
Sbjct: 188 VMYGTCT 194


>sp|YVHA_VACCC|UNCHARACTERIZED 8.1 kDa protein|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1  QKVMYGFCS 9
          ++VM+GF S
Sbjct: 51 RRVMFGFNS 59


>sp|NEC1_HCMVM|NUCLEAR egress protein 1|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 5   YGFC 8
           YGFC
Sbjct: 156 YGFC 159


>sp|NEC1_HCMVA|NUCLEAR egress protein 1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 5   YGFC 8
           YGFC
Sbjct: 156 YGFC 159


>sp|OBP_HHV6Z|REPLICATION origin-binding protein|Human herpesvirus 6B (strain Z29)

Query: 5   YGFCSV 10
           Y FCSV
Sbjct: 388 YNFCSV 393


>sp|PG064_MONPV|PROTEIN OPG064|Monkeypox virus (MPXV)

Query: 5   YGFC 8
           YGFC
Sbjct: 417 YGFC 420


>sp|OBP_HHV6U|REPLICATION origin-binding protein|Human herpesvirus 6A (strain Uganda-1102)

Query: 5   YGFCSV 10
           Y FCSV
Sbjct: 388 YNFCSV 393


>sp|PG064_VAR67|PROTEIN OPG064|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 5   YGFC 8
           YGFC
Sbjct: 417 YGFC 420


>sp|PG064_VACCC|PROTEIN OPG064|Vaccinia virus (strain Copenhagen) (VACV)

Query: 5   YGFC 8
           YGFC
Sbjct: 417 YGFC 420


>sp|HELI_HHV7J|DNA replication helicase|Human herpesvirus 7 (strain JI)

Query: 4   MYGFC 8
           MY FC
Sbjct: 516 MYSFC 520


>sp|HELI_HHV6U|DNA replication helicase|Human herpesvirus 6A (strain Uganda-1102)

Query: 4   MYGFC 8
           MY FC
Sbjct: 516 MYSFC 520


>sp|HELI_HHV6Z|DNA replication helicase|Human herpesvirus 6B (strain Z29)

Query: 4   MYGFC 8
           MY FC
Sbjct: 516 MYSFC 520


>sp|SPIKE_CVH22|SPIKE glycoprotein|Human coronavirus 229E (HCoV-229E)

Query: 1   QKVMYGFC 8
           Q   YGFC
Sbjct: 921 QSKRYGFC 928


>sp|POLG_DEN1W|GENOME polyprotein|Dengue virus type 1 (strain

Query: 3   VMYGFCS 9
           V YG CS
Sbjct: 189 VTYGTCS 195


>sp|POLG_DEN1S|GENOME polyprotein|Dengue virus type 1 (strain

Query: 3   VMYGFCS 9
           V YG CS
Sbjct: 189 VTYGTCS 195


>sp|POLG_DEN1B|GENOME polyprotein|Dengue virus type 1 (strain

Query: 3   VMYGFCS 9
           V YG CS
Sbjct: 189 VTYGTCS 195


>sp|SPIKE_CVHNL|SPIKE glycoprotein|Human coronavirus NL63 (HCoV-NL63)

Query: 1    QKVMYGFC 8
            Q   YGFC
Sbjct: 1102 QSNRYGFC 1109


>sp|POLG_DEN1A|GENOME polyprotein|Dengue virus type 1 (strain

Query: 3   VMYGFCS 9
           V YG CS
Sbjct: 189 VTYGTCS 195


>sp|POLG_DEN1C|GENOME polyprotein|Dengue virus type 1 (strain

Query: 3   VMYGFCS 9
           V YG CS
Sbjct: 189 VTYGTCS 195




14|Sequence|66|75|GFCSVKDSQA

>sp|POLN_EEEV8|POLYPROTEIN P1234|Eastern equine encephalitis virus (strain

Query: 3    CSVKDSQA 10
            C V+DS+A
Sbjct: 1573 CPVEDSEA 1580


>sp|L_CCHFI|RNA-DIRECTED RNA polymerase L|Crimean-Congo hemorrhagic fever virus (strain

Query: 2    FCSVKDSQ 9
            +CSV+D +
Sbjct: 1567 YCSVRDVE 1574


>sp|POLG_SVM10|GENOME polyprotein|Sapporo virus (isolate

Query: 1   GFCSVK 6
           G CSVK
Sbjct: 814 GLCSVK 819


>sp|POLG_STEVM|GENOME polyprotein|St. louis encephalitis virus (strain

Query: 1    GFCSVKD 7
            G CS+K+
Sbjct: 2460 GICSIKE 2466


>sp|PA_INCJH|POLYMERASE acidic protein|Influenza C virus (strain C/Johannesburg/1/1966)

Query: 2   FCSVKDSQ 9
           FC   DSQ
Sbjct: 631 FCIYNDSQ 638


>sp|PA_INCAA|POLYMERASE acidic protein|Influenza C virus (strain C/Ann

Query: 2   FCSVKDSQ 9
           FC   DSQ
Sbjct: 631 FCIYNDSQ 638


>sp|PA_INCJJ|POLYMERASE acidic protein|Influenza C virus (strain C/JJ/1950)

Query: 2   FCSVKDSQ 9
           FC   DSQ
Sbjct: 631 FCIYNDSQ 638




15|Sequence|71|80|KDSQAALPKY

>sp|L_EBOZM|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)

Query: 1    KDSQAALPK 9
            KD +A LPK
Sbjct: 1911 KDQRARLPK 1919


>sp|L_EBOZ5|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)

Query: 1    KDSQAALPK 9
            KD +A LPK
Sbjct: 1911 KDQRARLPK 1919


>sp|TEG6_HHV2H|TEGUMENT protein UL55|Human herpesvirus 2 (strain HG52)

Query: 1  KDSQAALP 8
          KDSQ +LP
Sbjct: 71 KDSQHSLP 78


>sp|POLG_POL32|GENOME polyprotein|Poliovirus type 3 (strain 23127)

Query: 3   SQAALPK 9
           SQAA+P+
Sbjct: 572 SQAAMPQ 578




16|Sequence|76|85|ALPKYVLINW

>sp|PB2_INCJJ|POLYMERASE basic protein 2|Influenza C virus (strain C/JJ/1950)

Query: 4   KYVLINW 10
           +YV++NW
Sbjct: 446 QYVMMNW 452


>sp|PB2_INCJH|POLYMERASE basic protein 2|Influenza C virus (strain C/Johannesburg/1/1966)

Query: 4   KYVLINW 10
           +YV++NW
Sbjct: 446 QYVMMNW 452


>sp|PB2_INCBE|POLYMERASE basic protein 2|Influenza C virus (strain C/Berlin/1/1985)

Query: 4   KYVLINW 10
           +YV++NW
Sbjct: 446 QYVMMNW 452


>sp|PB2_INCAA|POLYMERASE basic protein 2|Influenza C virus (strain C/Ann

Query: 4   KYVLINW 10
           +YV++NW
Sbjct: 446 QYVMMNW 452


>sp|NS1_PAVHU|INITIATOR protein NS1|Human parvovirus B19 (isolate AU)

Query: 1   ALPKYVLINW 10
           ++P Y ++NW
Sbjct: 344 SVPVYGMVNW 353


>sp|NS1_PAVHV|INITIATOR protein NS1|Human parvovirus B19 (strain HV)

Query: 1   ALPKYVLINW 10
           ++P Y ++NW
Sbjct: 344 SVPVYGMVNW 353


>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 5    YVLINW 10
            YVL++W
Sbjct: 4920 YVLLDW 4925


>sp|VME1_CVHNL|MEMBRANE protein|Human coronavirus NL63 (HCoV-NL63)

Query: 2   LPKYVLI 8
           LPKYV++
Sbjct: 165 LPKYVIV 171


>sp|L_MUMPJ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype A (strain

Query: 4   KYVLINW 10
           +YVL NW
Sbjct: 446 EYVLKNW 452


>sp|L_MUMPZ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype N (strain

Query: 4   KYVLINW 10
           +YVL NW
Sbjct: 446 EYVLKNW 452


>sp|L_MUMPM|RNA-DIRECTED RNA polymerase L|Mumps virus genotype B (strain

Query: 4   KYVLINW 10
           +YVL NW
Sbjct: 446 EYVLKNW 452


>sp|POLG_CX16G|GENOME polyprotein|Coxsackievirus A16 (strain G-10)

Query: 2   LPKYVL 7
           LP+YVL
Sbjct: 196 LPEYVL 201


>sp|POLG_CX16T|GENOME polyprotein|Coxsackievirus A16 (strain Tainan/5079/98)

Query: 2   LPKYVL 7
           LP+YVL
Sbjct: 196 LPEYVL 201


>sp|NRAM_I000F|NEURAMINIDASE A virus (strain A/Chicken/Weybridge

Query: 3  PKYVLIN 9
          P Y+L+N
Sbjct: 81 PNYLLLN 87


>sp|NRAM_I85A3|NEURAMINIDASE A virus (strain A/Chicken/Victoria/1/1985

Query: 3  PKYVLIN 9
          P Y+L+N
Sbjct: 81 PSYLLLN 87


>sp|VIRF3_HHV8P|VIRAL IRF3-like protein|Human herpesvirus 8 type P

Query: 4  KYVLINW 10
          KY L+ W
Sbjct: 21 KYPLVKW 27


>sp|POLG_CXA24|GENOME polyprotein|Coxsackievirus A24 (strain EH24/70)

Query: 1   ALPKYVL 7
           A+P+YV+
Sbjct: 195 AIPEYVM 201




17|Sequence|81|90|VLINWVGEDV

>sp|VE2_HPV09|REGULATORY protein E2|Human papillomavirus 9

Query: 4   NWVGED 9
           +WVGED
Sbjct: 413 SWVGED 418


>sp|L_CCHFI|RNA-DIRECTED RNA polymerase L|Crimean-Congo hemorrhagic fever virus (strain

Query: 1    VLINWVGEDV 10
            +L++W+ ED+
Sbjct: 1014 MLLSWLSEDI 1023


>sp|V_PIV5|NON-STRUCTURAL protein V|Parainfluenza virus 5 (strain W3)

Query: 3   INWVGEDV 10
           I WVG++V
Sbjct: 177 IGWVGDEV 184


>sp|OBP_HHV2H|REPLICATION origin-binding protein|Human herpesvirus 2 (strain HG52)

Query: 2   LINWVGEDV 10
           LI W+GE +
Sbjct: 109 LIRWLGEAI 117


>sp|POLG_HCVSA|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 2    LINWVGED 9
            L  W+GED
Sbjct: 1961 LHTWIGED 1968


>sp|POLG_HCVEV|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 2    LINWVGED 9
            L  W+GED
Sbjct: 1961 LHTWIGED 1968


>sp|UL95_EBVB9|LATE gene expression regulator BGLF3|Epstein-Barr virus (strain B95-8)

Query: 4   NWVGEDV 10
           +W GED+
Sbjct: 225 DWKGEDI 231


>sp|PRIM_HHV8P|DNA primase|Human herpesvirus 8 type P

Query: 5   WVGEDV 10
           W GEDV
Sbjct: 556 WRGEDV 561


>sp|NP04_VZVO|NUCLEAR protein UL4 homolog|Varicella-zoster virus (strain Oka vaccine)

Query: 2   LINWVGED 9
            ++WVG D
Sbjct: 150 FMSWVGSD 157


>sp|NP04_VZVD|NUCLEAR protein UL4 homolog|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2   LINWVGED 9
            ++WVG D
Sbjct: 150 FMSWVGSD 157


>sp|L_PUUMS|RNA-DIRECTED RNA polymerase L|Puumala virus (strain Sotkamo/V-2969/81)

Query: 4   NWVGED 9
           NW+G D
Sbjct: 249 NWLGTD 254


>sp|L_PUUMG|RNA-DIRECTED RNA polymerase L|Puumala virus (strain Bank

Query: 4   NWVGED 9
           NW+G D
Sbjct: 249 NWLGTD 254


>sp|V_PI2HT|NON-STRUCTURAL protein V|Human parainfluenza 2 virus (strain

Query: 3   INWVGEDV 10
           I WVG+ V
Sbjct: 180 IAWVGDQV 187


>sp|V_PI2H|NON-STRUCTURAL protein V|Human parainfluenza 2 virus (HPIV-2)

Query: 3   INWVGEDV 10
           I WVG+ V
Sbjct: 180 IAWVGDQV 187


>sp|L_VSNJO|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis New Jersey virus

Query: 2   LINWVGED 9
           L  WVG+D
Sbjct: 131 LKGWVGKD 138


>sp|VE8E2_HPV65|PROTEIN E8^E2C|Human papillomavirus 65

Query: 4   NWVGE 8
           NWVG+
Sbjct: 165 NWVGD 169


>sp|VE8E2_HPV04|PROTEIN E8^E2C|Human papillomavirus 4

Query: 4   NWVGE 8
           NWVG+
Sbjct: 165 NWVGD 169


>sp|VE2_HPV65|REGULATORY protein E2|Human papillomavirus 65

Query: 4   NWVGE 8
           NWVG+
Sbjct: 357 NWVGD 361


>sp|VE2_HPV04|REGULATORY protein E2|Human papillomavirus 4

Query: 4   NWVGE 8
           NWVG+
Sbjct: 357 NWVGD 361


>sp|POLG_DEN1C|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2   LINWVGEDV 10
           +INW G+++
Sbjct: 780 VINWKGKEL 788


>sp|PG130_VACCC|39KDA core protein OPG130|Vaccinia virus (strain Copenhagen) (VACV)

Query: 2   LINWVGED 9
           L +W+ ED
Sbjct: 116 LFDWLSED 123


>sp|POLG_DEN1A|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2   LINWVGEDV 10
           +INW G+++
Sbjct: 780 VINWKGKEL 788


>sp|L_PIV5|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain W3)

Query: 1   VLINWVGED 9
           +L+N++G+D
Sbjct: 514 LLLNFLGDD 522


>sp|L_PIV5W|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain 21004-WR)

Query: 1   VLINWVGED 9
           +L+N++G+D
Sbjct: 514 LLLNFLGDD 522


>sp|CAPSD_HBVB8|CAPSID protein|Hepatitis B virus genotype B1

Query: 2  LINWVGEDV 10
          L +WVG+++
Sbjct: 68 LASWVGQNL 76


>sp|L_DUGBA|RNA-DIRECTED RNA polymerase L|Dugbe virus (isolate ArD44313) (DUGV)

Query: 1    VLINWVGEDV 10
            +L+ W+ ED+
Sbjct: 1105 LLLGWLMEDL 1114


>sp|POLG_AIVA8|GENOME polyprotein|Aichi virus (strain Human/A846/88/1989) (AiV)

Query: 3    INWVGE 8
            + W+GE
Sbjct: 1332 VEWIGE 1337


>sp|POLG_DEN3S|GENOME polyprotein|Dengue virus type 3 (strain

Query: 2   LINWVGEDV 10
           +INW G+++
Sbjct: 778 VINWKGKEL 786


>sp|POLG_DEN3M|GENOME polyprotein|Dengue virus type 3 (strain

Query: 2   LINWVGEDV 10
           +INW G+++
Sbjct: 778 VINWKGKEL 786


>sp|POLG_DEN3C|GENOME polyprotein|Dengue virus type 3 (strain

Query: 2   LINWVGEDV 10
           +INW G+++
Sbjct: 778 VINWKGKEL 786


>sp|POLG_DEN3P|GENOME polyprotein|Dengue virus type 3 (strain

Query: 2   LINWVGEDV 10
           +INW G+++
Sbjct: 778 VINWKGKEL 786


>sp|POLN_HEVCT|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 4

Query: 2   LINWVGED 9
            + W+G+D
Sbjct: 473 FMRWLGQD 480


>sp|POLG_DEN3I|GENOME polyprotein|Dengue virus type 3 (strain

Query: 2   LINWVGEDV 10
           +INW G+++
Sbjct: 778 VINWKGKEL 786


>sp|VP7_CTFVL|UNCHARACTERIZED protein VP7|Colorado tick fever virus (strain

Query: 4  NWVGED 9
          NW G D
Sbjct: 78 NWFGPD 83


>sp|POLG_HCVEU|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 2    LINWVGED 9
            L  WV ED
Sbjct: 1964 LHQWVNED 1971


>sp|POLG_HCV6A|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 2    LINWVGED 9
            L  WV ED
Sbjct: 1965 LHQWVNED 1972


>sp|L_SABVB|RNA-DIRECTED RNA polymerase L|Sabia mammarenavirus (isolate

Query: 2   LINWVGED 9
           +INW+  D
Sbjct: 598 MINWLNFD 605


>sp|GH_HHV6U|ENVELOPE glycoprotein H|Human herpesvirus 6A (strain Uganda-1102)

Query: 2   LINWVGEDV 10
           +  +VGED+
Sbjct: 171 ITRYVGEDI 179


>sp|GH_HHV6G|ENVELOPE glycoprotein H|Human herpesvirus 6A (strain GS)

Query: 2   LINWVGEDV 10
           +  +VGED+
Sbjct: 171 ITRYVGEDI 179


>sp|GP_HTRV|ENVELOPMENT polyprotein|Heartland virus (HTRV)

Query: 5   WVGEDV 10
           WVGE V
Sbjct: 176 WVGEVV 181


>sp|POLG_DEN1W|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2   LINWVGEDV 10
           +INW G ++
Sbjct: 780 VINWKGREL 788


>sp|POLG_DEN1B|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2   LINWVGEDV 10
           +INW G ++
Sbjct: 780 VINWKGREL 788


>sp|POLG_DEN1S|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2   LINWVGEDV 10
           +INW G ++
Sbjct: 779 VINWKGREL 787




18|Sequence|86|95|VGEDVPDARK

>sp|VL1_HPV36|MAJOR capsid protein L1|Human papillomavirus 36

Query: 2   GEDVPDAR 9
           G+D+PDAR
Sbjct: 268 GDDIPDAR 275


>sp|VL1_HPV16|MAJOR capsid protein L1|Human papillomavirus type 16

Query: 1   VGEDVPD 7
           VGE+VPD
Sbjct: 267 VGENVPD 273


>sp|VL1_HPV12|MAJOR capsid protein L1|Human papillomavirus 12

Query: 2   GEDVPDAR 9
           G+D+PDA+
Sbjct: 268 GDDIPDAQ 275


>sp|MAT_INCTA|POLYPROTEIN p42|Influenza C virus (strain C/Taylor/1233/1947)

Query: 1   VGEDVPD 7
           +GED PD
Sbjct: 351 LGEDAPD 357


>sp|MAT_INCCA|POLYPROTEIN p42|Influenza C virus (strain C/California/1978)

Query: 1   VGEDVPD 7
           +GED PD
Sbjct: 351 LGEDAPD 357


>sp|MAT_INCJJ|POLYPROTEIN p42|Influenza C virus (strain C/JJ/1950)

Query: 1   VGEDVPD 7
           +GED PD
Sbjct: 351 LGEDAPD 357


>sp|MAT_INCHY|POLYPROTEIN p42|Influenza C virus (strain C/Hyogo/1/1983)

Query: 1   VGEDVPD 7
           +GED PD
Sbjct: 351 LGEDAPD 357


>sp|MAT_INCAA|POLYPROTEIN p42|Influenza C virus (strain C/Ann

Query: 1   VGEDVPD 7
           +GED PD
Sbjct: 351 LGEDAPD 357


>sp|VL1_HPV51|MAJOR capsid protein L1|Human papillomavirus 51

Query: 1   VGEDVPD 7
           VGED+P+
Sbjct: 266 VGEDIPN 272


>sp|VL1_HPV55|MAJOR capsid protein L1|Human papillomavirus type 55

Query: 1   VGEDVP 6
           VGED+P
Sbjct: 264 VGEDIP 269


>sp|VL1_HPV11|MAJOR capsid protein L1|Human papillomavirus 11

Query: 1   VGEDVPD 7
           VGE VPD
Sbjct: 264 VGEPVPD 270


>sp|VL1_HPV67|MAJOR capsid protein L1|Human papillomavirus 67

Query: 1   VGEDVP 6
           +GEDVP
Sbjct: 297 LGEDVP 302


>sp|VL1_HPV6B|MAJOR capsid protein L1|Human papillomavirus type 6b

Query: 1   VGEDVPD 7
           VGE VPD
Sbjct: 263 VGEPVPD 269


>sp|VL1_HPV6A|MAJOR capsid protein L1|Human papillomavirus type 6a

Query: 1   VGEDVPD 7
           VGE VPD
Sbjct: 263 VGEPVPD 269


>sp|POLG_CXB4J|GENOME polyprotein|Coxsackievirus B4 (strain JVB /

Query: 2   GEDVPDARK 10
           G   PD+RK
Sbjct: 468 GAGAPDSRK 476


>sp|POLG_CXB4E|GENOME polyprotein|Coxsackievirus B4 (strain E2) (CVB4)

Query: 2   GEDVPDARK 10
           G   PD+RK
Sbjct: 468 GAGAPDSRK 476


>sp|VL1_HPV42|MAJOR capsid protein L1|Human papillomavirus 42

Query: 1   VGEDVPD 7
           +GE VPD
Sbjct: 264 IGEPVPD 270


>sp|POLG_TBEVH|GENOME polyprotein|Tick-borne encephalitis virus (strain Hypr)

Query: 1    VGEDVPDA 8
            +GE  PDA
Sbjct: 2658 IGESSPDA 2665


>sp|VP8_CTFVL|UNCHARACTERIZED protein VP8|Colorado tick fever virus (strain

Query: 3   EDVPDAR 9
           EDV DAR
Sbjct: 217 EDVADAR 223


>sp|POLG_TBEVW|GENOME polyprotein|Tick-borne encephalitis virus European subtype

Query: 1    VGEDVPDA 8
            +GE  PDA
Sbjct: 2658 IGESSPDA 2665


>sp|POLG_OHFV|GENOME polyprotein|Omsk hemorrhagic fever virus (OHFV)

Query: 1    VGEDVPDA 8
            +GE  PDA
Sbjct: 2658 IGESSPDA 2665


>sp|DPOL_VARV|DNA polymerase|Variola virus

Query: 1   VGEDVPDAR 9
           +G+D  DA+
Sbjct: 371 IGDDTTDAK 379


>sp|DPOL_VAR67|DNA polymerase|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 1   VGEDVPDAR 9
           +G+D  DA+
Sbjct: 371 IGDDTTDAK 379


>sp|DPOL_MONPV|DNA polymerase|Monkeypox virus (MPXV)

Query: 1   VGEDVPDAR 9
           +G+D  DA+
Sbjct: 371 IGDDTTDAK 379


>sp|VL2_HPV1|MINOR capsid protein L2|Human papillomavirus type 1 (Human

Query: 1   VGEDVP 6
           VGED+P
Sbjct: 208 VGEDIP 213


>sp|POLG_LIVK|GENOME polyprotein|Louping ill virus (isolate Grouses/Scotland/K/1980)

Query: 1    VGEDVPDA 8
            +GE  PDA
Sbjct: 2658 IGESNPDA 2665


>sp|POLG_LIV|GENOME polyprotein|Louping ill virus (LIV)

Query: 1    VGEDVPDA 8
            +GE  PDA
Sbjct: 2658 IGESNPDA 2665


>sp|DPOL_HCMVM|DNA polymerase catalytic subunit|Human cytomegalovirus (strain Merlin)

Query: 1   VGEDVPDAR 9
           VGE VP+ R
Sbjct: 174 VGELVPEPR 182


>sp|DPOL_HCMVA|DNA polymerase catalytic subunit|Human cytomegalovirus (strain AD169)

Query: 1   VGEDVPDAR 9
           VGE VP+ R
Sbjct: 174 VGELVPEPR 182


>sp|VL1_HPV58|MAJOR capsid protein L1|Human papillomavirus 58

Query: 1   VGEDVPD 7
           +GE VPD
Sbjct: 293 LGEAVPD 299


>sp|VL1_HPV29|MAJOR capsid protein L1|Human papillomavirus 29

Query: 1   VGEDVPDA 8
           VG+ +PD+
Sbjct: 267 VGDKIPDS 274


>sp|POLG_DEN4P|GENOME polyprotein|Dengue virus type 4 (strain

Query: 1   VGEDVPD 7
           VG D+P+
Sbjct: 430 VGNDIPN 436


>sp|VL1_HPV15|MAJOR capsid protein L1|Human papillomavirus 15

Query: 1   VGEDVPDA 8
           VG+ +PDA
Sbjct: 268 VGDALPDA 275


>sp|POLG_TBEVS|GENOME polyprotein|Tick-borne encephalitis virus Far Eastern

Query: 1    VGEDVPDA 8
            +GE  PDA
Sbjct: 2657 IGESNPDA 2664


>sp|POLG_LANVT|GENOME polyprotein|Langat virus (strain TP21)

Query: 1    VGEDVPDA 8
            +GE  PDA
Sbjct: 2658 IGESNPDA 2665


>sp|VL1_HPV33|MAJOR capsid protein L1|Human papillomavirus 33

Query: 1   VGEDVPD 7
           +GE VPD
Sbjct: 267 LGEAVPD 273


>sp|NCAP_PI2HT|NUCLEOPROTEIN parainfluenza 2 virus (strain

Query: 1   VGEDVPD 7
           + ED+PD
Sbjct: 133 LAEDIPD 139




19|Sequence|91|100|PDARKCACAS

>sp|NCAP_ISFV|NUCLEOPROTEIN virus (ISFV)

Query: 1   PDARKC 6
           PD RKC
Sbjct: 119 PDGRKC 124


>sp|POLG_HCVVA|GENOME polyprotein|Hepatitis C virus genotype 2k

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 732 DARVCAC 738


>sp|POLG_HCVJ8|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 732 DARICAC 738


>sp|POLG_HCVJP|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 732 DARICAC 738


>sp|POLG_HCVJ6|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 732 DARVCAC 738


>sp|POLG_HCVVP|GENOME polyprotein|Hepatitis C virus genotype 6h

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 729 DARVCAC 735


>sp|POLG_HCVBK|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 728 DARVCAC 734


>sp|POLG_HCVBB|GENOME polyprotein|Hepatitis C virus genotype 2c

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 732 DARVCAC 738


>sp|POLG_HCVJA|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 728 DARVCAC 734


>sp|POLG_HCVR6|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 728 DARVCAC 734


>sp|POLG_HCVJF|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 732 DARVCAC 738


>sp|POLG_HCVJ4|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 728 DARVCAC 734


>sp|POLG_HCVCO|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 728 DARVCAC 734


>sp|POLG_HCVJT|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 728 DARVCAC 734


>sp|POLG_HCVTW|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 728 DARVCAC 734


>sp|POLG_HCVH9|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 728 DARICAC 734


>sp|POLG_HCVIN|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 728 DARICAC 734


>sp|POLG_HCVVN|GENOME polyprotein|Hepatitis C virus genotype 6d

Query: 2   DARKCAC 8
           DAR CAC
Sbjct: 726 DARICAC 732


>sp|NS1_PAVHV|INITIATOR protein NS1|Human parvovirus B19 (strain HV)

Query: 1   PDARKCAC 8
           PD  +C+C
Sbjct: 635 PDLVRCSC 642


>sp|UNG_HHV6Z|URACIL-DNA glycosylase|Human herpesvirus 6B (strain Z29)

Query: 1   PDARKCACA 9
           PD R C  A
Sbjct: 96  PDGRGCGLA 104


>sp|UNG_HHV6U|URACIL-DNA glycosylase|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   PDARKCACA 9
           PD R C  A
Sbjct: 96  PDGRGCGLA 104


>sp|NS1_PAVHU|INITIATOR protein NS1|Human parvovirus B19 (isolate AU)

Query: 1   PDARKCAC 8
           PD  +C+C
Sbjct: 635 PDLVRCSC 642


>sp|GB_EBVG|ENVELOPE glycoprotein B|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   PDARKC 6
           PDA KC
Sbjct: 337 PDAFKC 342


>sp|GB_EBVB9|ENVELOPE glycoprotein B|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   PDARKC 6
           PDA KC
Sbjct: 337 PDAFKC 342


>sp|GB_EBVA8|ENVELOPE glycoprotein B|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   PDARKC 6
           PDA KC
Sbjct: 337 PDAFKC 342


>sp|POLG_HCVJ1|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 2   DARKCAC 8
           DAR C+C
Sbjct: 728 DARVCSC 734


>sp|POLG_HCV77|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 2   DARKCAC 8
           DAR C+C
Sbjct: 728 DARVCSC 734


>sp|POLG_HCV1|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 2   DARKCAC 8
           DAR C+C
Sbjct: 728 DARVCSC 734


>sp|ORF75_HHV8P|PROTEIN ORF75|Human herpesvirus 8 type P

Query: 3   ARKCAC 8
           AR CAC
Sbjct: 497 ARLCAC 502


>sp|POLG_HCVGL|GENOME polyprotein|Hepatitis C virus (isolate Glasgow)

Query: 2   DARKCAC 8
           DAR C+C
Sbjct: 728 DARVCSC 734


>sp|SPIKE_MERS1|SPIKE glycoprotein|Middle East respiratory syndrome-related coronavirus

Query: 1  PDARKCAC 8
          PD+ K AC
Sbjct: 23 PDSVKSAC 30


>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)

Query: 2    DARKCACAS 10
            DAR   CAS
Sbjct: 4385 DARLVPCAS 4393


>sp|POLG_HCVEU|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 2   DARKCAC 8
           DAR C C
Sbjct: 732 DARICTC 738


>sp|POLG_HCV6A|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 2   DARKCAC 8
           DAR C C
Sbjct: 733 DARICTC 739


>sp|POLG_HCVT5|GENOME polyprotein|Hepatitis C virus genotype 6b

Query: 2   DARKCAC 8
           DAR C C
Sbjct: 733 DARICTC 739


>sp|R1A_CVH22|REPLICASE polyprotein 1a|Human coronavirus 229E (HCoV-229E)

Query: 5    KCACAS 10
            KC+C S
Sbjct: 1125 KCSCTS 1130


>sp|POLG_HCVSA|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 2   DARKCAC 8
           DAR C C
Sbjct: 729 DARICTC 735


>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)

Query: 5    KCACAS 10
            KC+C S
Sbjct: 1125 KCSCTS 1130


>sp|UL87_HCMVM|UNCHARACTERIZED protein UL87|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 4   RKCACAS 10
           R+C C S
Sbjct: 128 RRCCCGS 134


>sp|PRIM_HHV2H|DNA primase|Human herpesvirus 2 (strain HG52)

Query: 1   PDARKCACA 9
           PD+  C+CA
Sbjct: 756 PDSVVCSCA 764


>sp|POLN_EEEV8|POLYPROTEIN P1234|Eastern equine encephalitis virus (strain

Query: 2   DARKCA 7
           DARKC 
Sbjct: 670 DARKCV 675


>sp|POLN_WEEV|POLYPROTEIN P1234|Western equine encephalitis virus (WEEV)

Query: 2   DARKCA 7
           DARKC 
Sbjct: 670 DARKCV 675


>sp|UL87_HCMVA|PROTEIN UL87|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 4   RKCACAS 10
           R+C C S
Sbjct: 128 RRCCCGS 134


>sp|POLG_HCVVO|GENOME polyprotein|Hepatitis C virus genotype 6k

Query: 3   ARKCAC 8
           AR CAC
Sbjct: 731 ARVCAC 736




20|Sequence|96|105|CACASHVAKV

>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 1    CACASHVAK 9
            CAC +H+AK
Sbjct: 2905 CACYAHLAK 2913


>sp|R1A_CVHNL|REPLICASE polyprotein 1a|Human coronavirus NL63 (HCoV-NL63)

Query: 1    CACASHVAK 9
            CAC +H+AK
Sbjct: 2905 CACYAHLAK 2913


>sp|CAPSD_NVN68|CAPSID protein VP1|Norovirus (strain Human/NoV/United

Query: 5   SHVAKV 10
           SHVAK+
Sbjct: 285 SHVAKI 290


>sp|POLG_STEVM|GENOME polyprotein|St. louis encephalitis virus (strain

Query: 1    CACASHVAKV 10
            CA   HV +V
Sbjct: 2615 CATLKHVQEV 2624


>sp|YLR3_EBVP3|UNCHARACTERIZED protein BLRF3|Epstein-Barr virus (strain P3HR-1) (HHV-4)

Query: 1   CACASH 6
           C C SH
Sbjct: 124 CFCPSH 129




21|Sequence|101|110|HVAKVAEFFQ

>sp|POLG_HAVGB|GENOME polyprotein|Human hepatitis A virus genotype

Query: 3    AKVAEFFQ 10
            + VAEFFQ
Sbjct: 1431 SAVAEFFQ 1438


>sp|POLG_HAVH2|GENOME polyprotein|Human hepatitis A virus genotype

Query: 3    AKVAEFFQ 10
            + VAEFFQ
Sbjct: 1431 SAVAEFFQ 1438


>sp|POLG_HAVLA|GENOME polyprotein|Human hepatitis A virus genotype

Query: 3    AKVAEFFQ 10
            + VAEFFQ
Sbjct: 1431 SAVAEFFQ 1438


>sp|POLG_HAVHM|GENOME polyprotein|Human hepatitis A virus genotype

Query: 3    AKVAEFFQ 10
            + VAEFFQ
Sbjct: 1431 SAVAEFFQ 1438


>sp|POLG_HAV88|GENOME polyprotein|Human hepatitis A virus genotype

Query: 3    AKVAEFFQ 10
            + VAEFFQ
Sbjct: 1431 SAVAEFFQ 1438


>sp|POLG_HAVJ8|GENOME polyprotein|Human hepatitis A virus genotype

Query: 3    AKVAEFFQ 10
            + VAEFFQ
Sbjct: 1431 SAVAEFFQ 1438


>sp|POLG_HAVNO|GENOME polyprotein|Human hepatitis A virus genotype

Query: 3    AKVAEFFQ 10
            + VAEFFQ
Sbjct: 1431 SAVAEFFQ 1438


>sp|POLG_HAVCF|GENOME polyprotein|Human hepatitis A virus genotype

Query: 3    AKVAEFFQ 10
            + VAEFFQ
Sbjct: 1429 SAVAEFFQ 1436


>sp|POLG_HAVHA|GENOME polyprotein|Human hepatitis A virus genotype

Query: 3    AKVAEFFQ 10
            + VAEFFQ
Sbjct: 1265 SAVAEFFQ 1272


>sp|VE6_HPV40|PROTEIN E6|Human papillomavirus 40

Query: 1   HVAKVAEFFQ 10
           H+ K  +FF+
Sbjct: 118 HIVKKTQFFK 127


>sp|VE6_HPV07|PROTEIN E6|Human papillomavirus 7

Query: 1   HVAKVAEFFQ 10
           H+ K  +FF+
Sbjct: 118 HIVKKTQFFK 127


>sp|VE6_HPV43|PROTEIN E6|Human papillomavirus 43

Query: 1   HVAKVAEFFQ 10
           H+ + A+FF+
Sbjct: 119 HIVQKAQFFK 128




22|Sequence|106|115|AEFFQGVDVI

>sp|NSP4_ROTGA|NON-STRUCTURAL glycoprotein 4|Rotavirus B (isolate RVB/Human/China/ADRV/1982)

Query: 2   EFFQGVDV 9
           E FQG+DV
Sbjct: 126 EHFQGMDV 133


>sp|POLG_YEFVN|GENOME polyprotein|Yellow fever virus (isolate Angola/14FA/1971)

Query: 2    EFFQGVDV 9
            E FQG+DV
Sbjct: 1722 EAFQGLDV 1729


>sp|GB_VZVO|ENVELOPE glycoprotein B|Varicella-zoster virus (strain Oka vaccine)

Query: 1   AEFFQGV 7
           A+FFQG+
Sbjct: 748 AQFFQGL 754


>sp|GB_VZVD|ENVELOPE glycoprotein B|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 1   AEFFQGV 7
           A+FFQG+
Sbjct: 748 AQFFQGL 754


>sp|DNBI_HHV7J|MAJOR DNA-binding protein|Human herpesvirus 7 (strain JI)

Query: 3  FFQGVDV 9
          FF G DV
Sbjct: 87 FFHGTDV 93


>sp|GH_HHV1F|ENVELOPE glycoprotein H|Human herpesvirus 1 (strain F)

Query: 1   AEFFQG 6
           AEFF G
Sbjct: 361 AEFFSG 366


>sp|GH_HHV1E|ENVELOPE glycoprotein H|Human herpesvirus 1 (strain HFEM)

Query: 1   AEFFQG 6
           AEFF G
Sbjct: 361 AEFFSG 366


>sp|GH_HHV11|ENVELOPE glycoprotein H|Human herpesvirus 1 (strain 17)

Query: 1   AEFFQG 6
           AEFF G
Sbjct: 361 AEFFSG 366


>sp|POL_HTL3P|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 3

Query: 2   EFFQGVDVI 10
           + FQ +DV+
Sbjct: 991 QIFQNIDVL 999


>sp|POL_HTL32|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 3

Query: 2   EFFQGVDVI 10
           + FQ +DV+
Sbjct: 991 QIFQNIDVL 999


>sp|POLG_HRV8A|GENOME polyprotein|Human rhinovirus A serotype 89

Query: 4    FQGVDV 9
            FQG+D+
Sbjct: 1423 FQGIDL 1428


>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related coronavirus

Query: 3    FFQGVDV 9
            FF G D+
Sbjct: 1515 FFNGADI 1521


>sp|R1A_MERS1|REPLICASE polyprotein 1a|Middle East respiratory syndrome-related coronavirus

Query: 3    FFQGVDV 9
            FF G D+
Sbjct: 1515 FFNGADI 1521


>sp|POLG_HAVCF|GENOME polyprotein|Human hepatitis A virus genotype

Query: 2    EFFQGVDVI 10
            +F +GVD+I
Sbjct: 1165 QFQKGVDLI 1173


>sp|NS1A_HASV8|NON-STRUCTURAL polyprotein 1A|Human astrovirus-8 (HAstV-8)

Query: 3   FFQGVDVI 10
           FF G D++
Sbjct: 451 FFSGNDIV 458


>sp|NS1A_HASV5|NON-STRUCTURAL polyprotein 1A|Human astrovirus-5 (HAstV-5)

Query: 3   FFQGVDVI 10
           FF G D++
Sbjct: 450 FFSGNDIV 457


>sp|NS1A_HASV4|NON-STRUCTURAL polyprotein 1A|Human astrovirus-4 (HAstV-4)

Query: 3   FFQGVDVI 10
           FF G D++
Sbjct: 450 FFSGNDIV 457


>sp|NS1AB_HASV8|NON-STRUCTURAL polyprotein 1AB|Human astrovirus-8 (HAstV-8)

Query: 3   FFQGVDVI 10
           FF G D++
Sbjct: 451 FFSGNDIV 458


>sp|NS1AB_HASV5|NON-STRUCTURAL polyprotein 1AB|Human astrovirus-5 (HAstV-5)

Query: 3   FFQGVDVI 10
           FF G D++
Sbjct: 450 FFSGNDIV 457


>sp|NS1AB_HASV4|NON-STRUCTURAL polyprotein 1AB|Human astrovirus-4 (HAstV-4)

Query: 3   FFQGVDVI 10
           FF G D++
Sbjct: 450 FFSGNDIV 457


>sp|NS1AB_HASV1|NON-STRUCTURAL polyprotein 1AB|Human astrovirus-1 (HAstV-1)

Query: 3   FFQGVDVI 10
           FF G D++
Sbjct: 450 FFSGNDIV 457


>sp|NS1A_HASV1|NON-STRUCTURAL polyprotein 1A|Human astrovirus-1 (HAstV-1)

Query: 3   FFQGVDVI 10
           FF G D++
Sbjct: 450 FFSGNDIV 457


>sp|DPOL_HHV6Z|DNA polymerase catalytic subunit|Human herpesvirus 6B (strain Z29)

Query: 4   FQGVDVI 10
           F+GVD++
Sbjct: 806 FKGVDLV 812




23|Sequence|111|120|GVDVIVNASS

>sp|POLN_RUBVV|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336) (RUBV)

Query: 1   GVDVIVNASS 10
           G  V+VNA++
Sbjct: 832 GCKVVVNAAN 841


>sp|POLN_RUBVT|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Therien) (RUBV)

Query: 1   GVDVIVNASS 10
           G  V+VNA++
Sbjct: 832 GCKVVVNAAN 841


>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)

Query: 1   GVDVIVNASS 10
           G  V+VNA++
Sbjct: 832 GCKVVVNAAN 841


>sp|POLN_RUBVO|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336 vaccine)

Query: 1   GVDVIVNASS 10
           G  V+VNA++
Sbjct: 832 GCKVVVNAAN 841


>sp|POLN_RUBVN|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RN-UK86) (RUBV)

Query: 1   GVDVIVNASS 10
           G  V+VNA++
Sbjct: 832 GCKVVVNAAN 841


>sp|POLN_RUBVM|NON-STRUCTURAL polyprotein p200|Rubella virus (strain M33) (RUBV)

Query: 1   GVDVIVNASS 10
           G  V+VNA++
Sbjct: 832 GCKVVVNAAN 841


>sp|POLN_RUBVD|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Cendehill) (RUBV)

Query: 1   GVDVIVNASS 10
           G  V+VNA++
Sbjct: 832 GCKVVVNAAN 841


>sp|POLN_RUBVC|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRDII) (RUBV)

Query: 1   GVDVIVNASS 10
           G  V+VNA++
Sbjct: 832 GCKVVVNAAN 841


>sp|POLN_RUBVB|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRD1) (RUBV)

Query: 1   GVDVIVNASS 10
           G  V+VNA++
Sbjct: 832 GCKVVVNAAN 841


>sp|SPIKE_CVHNL|SPIKE glycoprotein|Human coronavirus NL63 (HCoV-NL63)

Query: 2   VDVIVNASS 10
           VDV+VN S+
Sbjct: 421 VDVLVNVSA 429


>sp|RP147_MONPV|DNA-DIRECTED RNA polymerase 147 kDa|Monkeypox virus (MPXV)

Query: 2    VDVIVN 7
            VD+IVN
Sbjct: 1018 VDIIVN 1023


>sp|POLG_HKV1|GENOME polyprotein|Human klassevirus 1 (HKV-1)

Query: 2   VDVIVNAS 9
           V V+VNAS
Sbjct: 361 VTVVVNAS 368


>sp|RP147_VARV|DNA-DIRECTED RNA polymerase 147 kDa|Variola virus

Query: 2    VDVIVN 7
            VD+IVN
Sbjct: 1018 VDIIVN 1023


>sp|RP147_VAR67|DNA-DIRECTED RNA polymerase 147 kDa|Variola virus (isolate Human/India/Ind3/1967)

Query: 2    VDVIVN 7
            VD+IVN
Sbjct: 1018 VDIIVN 1023


>sp|RP147_VACCC|DNA-DIRECTED RNA polymerase 147 kDa|Vaccinia virus (strain Copenhagen) (VACV)

Query: 2    VDVIVN 7
            VD+IVN
Sbjct: 1018 VDIIVN 1023


>sp|RP147_VACCA|DNA-DIRECTED RNA polymerase 147 kDa|Vaccinia virus (strain Ankara) (VACV)

Query: 2    VDVIVN 7
            VD+IVN
Sbjct: 1018 VDIIVN 1023


>sp|POLG_SALVA|GENOME polyprotein|Salivirus A (isolate Human/Nigeria/NG-J1/2007) (SV-A)

Query: 2   VDVIVNAS 9
           V V+VNAS
Sbjct: 364 VTVVVNAS 371




24|Sequence|116|125|VNASSVEDID

>sp|VE1_HPV26|REPLICATION protein E1|Human papillomavirus type 26

Query: 4   SSVEDID 10
           +SVEDID
Sbjct: 167 ASVEDID 173


>sp|PG001_VACCL|CHEMOKINE-BINDING protein|Vaccinia virus (strain Lister) (VACV)

Query: 2  NASSVEDID 10
          +++SVED+D
Sbjct: 83 DSTSVEDVD 91


>sp|PG001_VACCC|INACTIVE chemokine-binding protein|Vaccinia virus (strain Copenhagen)

Query: 2  NASSVEDID 10
          +++SVED+D
Sbjct: 69 DSTSVEDVD 77


>sp|PG001_VAR67|CHEMOKINE-BINDING protein|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 2  NASSVEDID 10
          +++SVED+D
Sbjct: 78 DSTSVEDVD 86




25|Sequence|121|130|VEDIDAGAIG

>sp|GI_HHV2H|ENVELOPE glycoprotein I|Human herpesvirus 2 (strain HG52)

Query: 4  IDAGAIG 10
          +DAGA+G
Sbjct: 36 VDAGAVG 42


>sp|GI_HHV23|ENVELOPE glycoprotein I|Human herpesvirus 2 (strain 333)

Query: 4  IDAGAIG 10
          +DAGA+G
Sbjct: 36 VDAGAVG 42


>sp|GI_HHV11|ENVELOPE glycoprotein I|Human herpesvirus 1 (strain 17)

Query: 4  IDAGAIG 10
          +DAGA+G
Sbjct: 36 VDAGALG 42


>sp|LRP1_HHV1F|LATENCY-RELATED protein 1|Human herpesvirus 1 (strain F)

Query: 5   DAGAIG 10
           DAGA+G
Sbjct: 204 DAGAVG 209


>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related coronavirus

Query: 2    EDIDAGAI 9
            E+ID GA+
Sbjct: 6992 ENIDGGAM 6999


>sp|P100_HHV7J|LARGE structural phosphoprotein|Human herpesvirus 7 (strain JI)

Query: 1   VEDIDAGAI 9
           ++D D+G++
Sbjct: 694 IQDFDSGSL 702




26|Sequence|126|135|AGAIGQRLSN

>sp|V_HENDH|NON-STRUCTURAL protein V|Hendra virus (isolate Horse/Autralia/Hendra/1994)

Query: 2  GAIGQRLSN 10
          G IGQR+SN
Sbjct: 86 GTIGQRVSN 94


>sp|PHOSP_HENDH|PHOSPHOPROTEIN virus (isolate Horse/Autralia/Hendra/1994)

Query: 2  GAIGQRLSN 10
          G IGQR+SN
Sbjct: 86 GTIGQRVSN 94


>sp|W_HENDH|PROTEIN W|Hendra virus (isolate Horse/Autralia/Hendra/1994)

Query: 2  GAIGQRLSN 10
          G IGQR+SN
Sbjct: 86 GTIGQRVSN 94


>sp|PHOSP_NIPAV|PHOSPHOPROTEIN virus

Query: 2  GAIGQRLSN 10
          G IG+R+SN
Sbjct: 86 GTIGKRVSN 94


>sp|V_NIPAV|NON-STRUCTURAL protein V|Nipah virus

Query: 2  GAIGQRLSN 10
          G IG+R+SN
Sbjct: 86 GTIGKRVSN 94


>sp|W_NIPAV|PROTEIN W|Nipah virus

Query: 2  GAIGQRLSN 10
          G IG+R+SN
Sbjct: 86 GTIGKRVSN 94


>sp|VL1_HPV30|MAJOR capsid protein L1|Human papillomavirus 30

Query: 1   AGAIGQRL 8
           AGAIG++L
Sbjct: 271 AGAIGEQL 278


>sp|VL2_HPV42|MINOR capsid protein L2|Human papillomavirus 42

Query: 4   IGQRLS 9
           IGQRLS
Sbjct: 306 IGQRLS 311


>sp|PRIM_HHV11|DNA primase|Human herpesvirus 1 (strain 17)

Query: 2   GAIGQRLSN 10
           GA+G+RL++
Sbjct: 580 GALGRRLTD 588


>sp|RIR1_VARV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Variola virus

Query: 1   AGAIGQRLSN 10
           AG IG  +SN
Sbjct: 245 AGGIGLSISN 254


>sp|RIR1_VAR67|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Variola virus (isolate

Query: 1   AGAIGQRLSN 10
           AG IG  +SN
Sbjct: 245 AGGIGLSISN 254


>sp|RIR1_VACCC|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1   AGAIGQRLSN 10
           AG IG  +SN
Sbjct: 245 AGGIGLSISN 254


>sp|RIR1_VACCA|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Ankara) (VACV)

Query: 1   AGAIGQRLSN 10
           AG IG  +SN
Sbjct: 245 AGGIGLSISN 254


>sp|RIR1_MONPV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Monkeypox virus (MPXV)

Query: 1   AGAIGQRLSN 10
           AG IG  +SN
Sbjct: 245 AGGIGLSISN 254


>sp|NEF_HV1YF|PROTEIN Nef|Human immunodeficiency virus type 1

Query: 1  AGAIGQRLSN 10
          AGA  Q L+N
Sbjct: 35 AGAASQDLAN 44


>sp|NEF_HV1YB|PROTEIN Nef|Human immunodeficiency virus type 1

Query: 2  GAIGQRLSN 10
          GA+ Q L+N
Sbjct: 32 GAVSQDLAN 40


>sp|L_VSIVS|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 2   GAIGQRLSN 10
           GA+ Q +SN
Sbjct: 735 GALNQMVSN 743


>sp|L_VSIVN|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 2   GAIGQRLSN 10
           GA+ Q +SN
Sbjct: 735 GALNQMVSN 743


>sp|L_VSIVM|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 2   GAIGQRLSN 10
           GA+ Q +SN
Sbjct: 735 GALNQMVSN 743


>sp|L_VSIVA|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 2   GAIGQRLSN 10
           GA+ Q +SN
Sbjct: 735 GALNQMVSN 743




27|Sequence|131|140|QRLSNGLARL

>sp|GB_VZVO|ENVELOPE glycoprotein B|Varicella-zoster virus (strain Oka vaccine)

Query: 3   LSNGLARL 10
           LSN LARL
Sbjct: 461 LSNSLARL 468


>sp|GB_VZVD|ENVELOPE glycoprotein B|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 3   LSNGLARL 10
           LSN LARL
Sbjct: 461 LSNSLARL 468


>sp|NTP1_VARV|NUCLEOSIDE triphosphatase I|Variola virus

Query: 2   RLSNGL 7
           RLSNG+
Sbjct: 501 RLSNGM 506


>sp|NTP1_VAR67|NUCLEOSIDE triphosphatase I|Variola virus (isolate Human/India/Ind3/1967)

Query: 2   RLSNGL 7
           RLSNG+
Sbjct: 501 RLSNGM 506


>sp|NTP1_VACCC|NUCLEOSIDE triphosphatase I|Vaccinia virus (strain Copenhagen) (VACV)

Query: 2   RLSNGL 7
           RLSNG+
Sbjct: 501 RLSNGM 506


>sp|NTP1_VACCA|NUCLEOSIDE triphosphatase I|Vaccinia virus (strain Ankara) (VACV)

Query: 2   RLSNGL 7
           RLSNG+
Sbjct: 501 RLSNGM 506


>sp|NTP1_MONPV|NUCLEOSIDE triphosphatase I|Monkeypox virus (MPXV)

Query: 2   RLSNGL 7
           RLSNG+
Sbjct: 501 RLSNGM 506


>sp|POLS_RRVT|STRUCTURAL polyprotein|Ross river virus (strain T48)

Query: 1    QRLSNGLA 8
            QRL++GL 
Sbjct: 1227 QRLASGLG 1234




28|Sequence|136|145|GLARLSSPVL

>sp|L_MABVA|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Angola/2005)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 10 ARLSSPII 17


>sp|L_MABVP|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Popp-67)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 10 ARLSSPII 17


>sp|L_MABVM|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Musoke-80)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 10 ARLSSPII 17


>sp|L_MABVR|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ravn-87)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 10 ARLSSPII 17


>sp|L_MABVO|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ozolin-75)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 10 ARLSSPIV 17


>sp|L_EBOZM|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 11 ARLSSPIV 18


>sp|L_EBOZ5|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 11 ARLSSPIV 18


>sp|L_EBORR|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Reston-89) (REBOV)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 11 ARLSSPIV 18


>sp|L_EBORE|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Philippines-96)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 11 ARLSSPIV 18


>sp|L_EBOSU|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 12 ARLSSPIV 19


Query: 2   LARLSSPV 9
           LARL  PV
Sbjct: 257 LARLEDPV 264


>sp|L_EBOSM|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 3  ARLSSPVL 10
          ARLSSP++
Sbjct: 12 ARLSSPIV 19


Query: 2   LARLSSPV 9
           LARL  PV
Sbjct: 257 LARLEDPV 264


>sp|L_DUGBA|RNA-DIRECTED RNA polymerase L|Dugbe virus (isolate ArD44313) (DUGV)

Query: 1    GLARLSS 7
            GL+RLSS
Sbjct: 1618 GLSRLSS 1624




29|Sequence|141|150|SSPVLHRLRL

>sp|POLG_POWVL|GENOME polyprotein|Tick-borne powassan virus (strain LB)

Query: 3    PVLHRLRL 10
            PVLHR+ L
Sbjct: 2498 PVLHRIWL 2505


>sp|VE1_HPV40|REPLICATION protein E1|Human papillomavirus 40

Query: 2   SPVLHRLRL 10
           SP LH +RL
Sbjct: 110 SPRLHAIRL 118


>sp|VE2_HPV61|REGULATORY protein E2|Human papillomavirus type 61

Query: 1   SSPVLH 6
           SSPV+H
Sbjct: 299 SSPVIH 304


>sp|L_EBOZM|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)

Query: 1    SSPVLHRLR 9
             +PVL RLR
Sbjct: 1067 ETPVLDRLR 1075


>sp|L_EBOZ5|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)

Query: 1    SSPVLHRLR 9
             +PVL RLR
Sbjct: 1067 ETPVLDRLR 1075


>sp|L_EBOSU|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 2    SPVLHRLR 9
            +P+L RLR
Sbjct: 1069 TPILERLR 1076


>sp|L_EBOSM|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 2    SPVLHRLR 9
            +P+L RLR
Sbjct: 1069 TPILERLR 1076


>sp|HN_PI4HA|HEMAGGLUTININ-NEURAMINIDASE parainfluenza 4a virus (strain

Query: 3   PVLHRLRL 10
           P L+R+RL
Sbjct: 425 PSLYRIRL 432


>sp|PAP_VZVO|DNA polymerase processivity factor|Varicella-zoster virus (strain Oka

Query: 2  SPVLHRLR 9
          SP+++RLR
Sbjct: 42 SPLVNRLR 49


>sp|PAP_VZVD|DNA polymerase processivity factor|Varicella-zoster virus (strain

Query: 2  SPVLHRLR 9
          SP+++RLR
Sbjct: 42 SPLVNRLR 49


>sp|RDRP_CTFVL|RNA-DIRECTED RNA polymerase VP1|Colorado tick fever virus (strain

Query: 2   SPVLHRLR 9
           S V HRLR
Sbjct: 666 SCVFHRLR 673


>sp|ORF2_VZVO|MEMBRANE protein 2|Varicella-zoster virus (strain Oka vaccine)

Query: 3   PVLHRLRL 10
           PV HR+R 
Sbjct: 222 PVCHRVRF 229


>sp|ORF2_VZVD|MEMBRANE protein 2|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 3   PVLHRLRL 10
           PV HR+R 
Sbjct: 222 PVCHRVRF 229


>sp|GH_HHV1F|ENVELOPE glycoprotein H|Human herpesvirus 1 (strain F)

Query: 1   SSPVLHR 7
           ++PV+HR
Sbjct: 511 TTPVVHR 517


>sp|GH_HHV1E|ENVELOPE glycoprotein H|Human herpesvirus 1 (strain HFEM)

Query: 1   SSPVLHR 7
           ++PV+HR
Sbjct: 511 TTPVVHR 517


>sp|GH_HHV11|ENVELOPE glycoprotein H|Human herpesvirus 1 (strain 17)

Query: 1   SSPVLHR 7
           ++PV+HR
Sbjct: 511 TTPVVHR 517


>sp|NSS_CCHFI|NON-STRUCTURAL protein|Crimean-Congo hemorrhagic fever virus (strain

Query: 1  SSPVLHRLRL 10
          SSP L R+R 
Sbjct: 90 SSPPLFRIRF 99




30|Sequence|146|155|HRLRLREDEN

>sp|VP4_ROTHM|OUTER capsid protein VP4|Rotavirus A (strain

Query: 2   RLRLRE 7
           RLRLRE
Sbjct: 617 RLRLRE 622


>sp|VP4_ROTH1|OUTER capsid protein VP4|Rotavirus A (isolate

Query: 2   RLRLRE 7
           RLRLRE
Sbjct: 617 RLRLRE 622


>sp|VP4_ROTHT|OUTER capsid protein VP4|Rotavirus A (strain RVA/Human/United

Query: 2   RLRLRE 7
           RLRLRE
Sbjct: 617 RLRLRE 622


>sp|VP4_ROTHN|OUTER capsid protein VP4|Rotavirus A (isolate

Query: 2   RLRLRE 7
           RLRLRE
Sbjct: 617 RLRLRE 622


>sp|POLG_WSLV|GENOME polyprotein|Wesselsbron virus (WSLV)

Query: 4    RLREDE 9
            RLRED+
Sbjct: 2007 RLREDQ 2012


>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related coronavirus

Query: 1    HRLRLRE 7
            HRL L+E
Sbjct: 4742 HRLSLKE 4748


>sp|KBTB1_HSPV|KELCH repeat and BTB domain-containing|Horsepox virus (HSPV)

Query: 3   LRLREDEN 10
           LRL  DEN
Sbjct: 151 LRLINDEN 158


>sp|KBTB1_VACCC|KELCH repeat and BTB domain-containing|Vaccinia virus (strain Copenhagen)

Query: 3   LRLREDEN 10
           LRL  DEN
Sbjct: 151 LRLINDEN 158


>sp|KBTB1_CWPXB|KELCH repeat and BTB domain-containing|Cowpox virus (strain Brighton Red)

Query: 3   LRLREDEN 10
           LRL  DEN
Sbjct: 151 LRLINDEN 158


>sp|KBTB1_CWPXG|KELCH repeat and BTB domain-containing|Cowpox virus (strain GRI-90 /

Query: 3   LRLREDEN 10
           LRL  DEN
Sbjct: 151 LRLINDEN 158


>sp|DPOL_ADE12|DNA polymerase|Human adenovirus A serotype 12

Query: 2   RLRLREDE 9
           RLRL  DE
Sbjct: 655 RLRLLSDE 662


>sp|RAP94_VARV|RNA polymerase-associated transcription-specificity factor

Query: 1   HRLRLRE 7
           H++RL+E
Sbjct: 328 HQIRLKE 334


>sp|RAP94_VAR67|RNA polymerase-associated transcription-specificity factor

Query: 1   HRLRLRE 7
           H++RL+E
Sbjct: 328 HQIRLKE 334




31|Sequence|151|160|REDENAEPVG

>sp|VE1_HPV51|REPLICATION protein E1|Human papillomavirus 51

Query: 2  EDENAEPVG 10
          EDENA+  G
Sbjct: 35 EDENADDTG 43


>sp|VE1_HPV32|REPLICATION protein E1|Human papillomavirus type 32

Query: 2  EDENAEPVG 10
          EDEN E  G
Sbjct: 35 EDENVEDSG 43


>sp|VE1_HPV72|REPLICATION protein E1|Human papillomavirus 72

Query: 2  EDENAEPVG 10
          EDEN+E  G
Sbjct: 41 EDENSEDRG 49


>sp|VE1_HPV29|REPLICATION protein E1|Human papillomavirus 29

Query: 2   EDENAEP 8
           E+EN EP
Sbjct: 639 EEENGEP 645


>sp|VE1_HPV16|REPLICATION protein E1|Human papillomavirus type 16

Query: 3   DENAEPV 9
           DEN  PV
Sbjct: 595 DENGNPV 601


>sp|RIR1_HHV8P|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Human herpesvirus 8 type P

Query: 3   DENAEPVG 10
           D N  PVG
Sbjct: 276 DNNIRPVG 283


>sp|PORTL_HHV6U|PORTAL protein|Human herpesvirus 6A (strain Uganda-1102)

Query: 4   ENAEPV 9
           EN+EP+
Sbjct: 616 ENSEPI 621


>sp|L_CCHFI|RNA-DIRECTED RNA polymerase L|Crimean-Congo hemorrhagic fever virus (strain

Query: 1   REDENAEPVG 10
           +ED   EP+ 
Sbjct: 579 QEDSEVEPIA 588


>sp|VE1_HPV33|REPLICATION protein E1|Human papillomavirus 33

Query: 3   DENAEPV 9
           DEN  PV
Sbjct: 588 DENGNPV 594


>sp|CAPSD_HASV7|CAPSID polyprotein VP90|Human astrovirus-7 (HAstV-7)

Query: 3   DENAEPV 9
           DEN  PV
Sbjct: 656 DENPSPV 662


>sp|NS1AB_HASV8|NON-STRUCTURAL polyprotein 1AB|Human astrovirus-8 (HAstV-8)

Query: 3    DENAEPV 9
            +EN EPV
Sbjct: 1325 NENLEPV 1331


>sp|NS1AB_HASV4|NON-STRUCTURAL polyprotein 1AB|Human astrovirus-4 (HAstV-4)

Query: 3    DENAEPV 9
            +EN EPV
Sbjct: 1323 NENLEPV 1329


>sp|NS1AB_HASV1|NON-STRUCTURAL polyprotein 1AB|Human astrovirus-1 (HAstV-1)

Query: 3    DENAEPV 9
            +EN EPV
Sbjct: 1344 NENLEPV 1350


>sp|TRM2_HCMVA|TRIPARTITE terminase subunit 2|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3  DENAEP 8
          DE+AEP
Sbjct: 38 DEDAEP 43




32|Sequence|156|165|AEPVGTTYQK

>sp|DNBI_EBVG|MAJOR DNA-binding protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1    AEPVGTTYQ 9
            AEPVGT  Q
Sbjct: 1089 AEPVGTASQ 1097


>sp|NRAM_I01A0|NEURAMINIDASE A virus (strain A/Silky

Query: 1  AEPVGTT 7
          AEP+G T
Sbjct: 46 AEPIGNT 52


>sp|SPIKE_CVHN1|SPIKE glycoprotein|Human coronavirus HKU1 (isolate N1)

Query: 3   PVGTTYQ 9
           P+GT Y+
Sbjct: 496 PIGTNYR 502


>sp|VP30_EBOZM|TRANSCRIPTIONAL activator VP30|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)

Query: 1   AEPVGTTYQK 10
           AEPV   YQ+
Sbjct: 204 AEPVLEVYQR 213


>sp|VP30_EBOZ5|TRANSCRIPTIONAL activator VP30|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)

Query: 1   AEPVGTTYQK 10
           AEPV   YQ+
Sbjct: 204 AEPVLEVYQR 213


>sp|NCAP_INCJH|NUCLEOPROTEIN C virus (strain C/Johannesburg/1/1966)

Query: 2   EPVGTTYQK 10
           EP+ T Y+K
Sbjct: 449 EPLQTLYKK 457


>sp|NCAP_INCAA|NUCLEOPROTEIN C virus (strain C/Ann

Query: 2   EPVGTTYQK 10
           EP+ T Y+K
Sbjct: 449 EPLQTLYKK 457


>sp|NCAP_INCCA|NUCLEOPROTEIN C virus (strain C/California/1978)

Query: 2   EPVGTTYQK 10
           EP+ T Y+K
Sbjct: 449 EPLQTLYKK 457


>sp|POLN_RRVT|POLYPROTEIN nsP1234|Ross river virus (strain T48)

Query: 1   AEPVGTTY 8
           AEP+ T Y
Sbjct: 853 AEPLATAY 860


>sp|POLN_SAGV|POLYPROTEIN P1234|Sagiyama virus (SAGV)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2171 AEPLATAY 2178


>sp|POLN_GETV|POLYPROTEIN P1234|Getah virus (GETV)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2171 AEPLATAY 2178


>sp|POLN_SINDO|POLYPROTEIN P1234|Sindbis virus subtype Ockelbo (strain

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2219 AEPLATAY 2226


>sp|POLN_RRVN|POLYPROTEIN P1234|Ross river virus (strain NB5092)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2184 AEPLATAY 2191


>sp|POLN_ONNVS|POLYPROTEIN P1234|O'nyong-nyong virus (strain SG650) (ONNV)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2217 AEPLATAY 2224


>sp|POLN_ONNVG|POLYPROTEIN P1234|O'nyong-nyong virus (strain Gulu) (ONNV)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2218 AEPLATAY 2225


>sp|POLN_MAYAB|POLYPROTEIN P1234|Mayaro virus (strain Brazil) (MAYV)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2141 AEPLATAY 2148


>sp|POLN_EEEV8|POLYPROTEIN P1234|Eastern equine encephalitis virus (strain

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2181 AEPLATAY 2188


>sp|POLN_BFV|POLYPROTEIN P1234|Barmah forest virus (BFV)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2115 AEPLATAY 2122


>sp|SPIKE_CVHN5|SPIKE glycoprotein|Human coronavirus HKU1 (isolate N5)

Query: 2   EPVGTTYQK 10
           +PV T Y++
Sbjct: 312 KPVATVYRR 320


>sp|SPIKE_CVHN2|SPIKE glycoprotein|Human coronavirus HKU1 (isolate N2)

Query: 2   EPVGTTYQK 10
           +PV T Y++
Sbjct: 312 KPVATVYRR 320


>sp|POLN_SFV|POLYPROTEIN P1234|Semliki forest virus (SFV)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2133 AEPLATAY 2140


>sp|POLN_CHIKS|POLYPROTEIN P1234|Chikungunya virus (strain S27-African prototype)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2178 AEPLATAY 2185


>sp|POLN_SINDV|POLYPROTEIN P1234|Sindbis virus (SINV)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2217 AEPLATAY 2224


>sp|POLN_ONNVI|POLYPROTEIN P1234|O'nyong-nyong virus (strain Igbo Ora)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2217 AEPLATAY 2224


>sp|POLN_CHIK3|POLYPROTEIN P1234|Chikungunya virus (strain 37997) (CHIKV)

Query: 1    AEPVGTTY 8
            AEP+ T Y
Sbjct: 2178 AEPLATAY 2185


>sp|POL_HV1MV|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 3   PVGTTYQK 10
           PVG  Y+K
Sbjct: 256 PVGDIYRK 263


>sp|GAG_HV1AN|GAG polyprotein|Human immunodeficiency virus type 1

Query: 3   PVGTTYQK 10
           PVG  Y+K
Sbjct: 256 PVGDIYRK 263


>sp|POL_HV1AN|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 3   PVGTTYQK 10
           PVG  Y+K
Sbjct: 256 PVGDIYRK 263


>sp|GAG_HV1MV|GAG polyprotein|Human immunodeficiency virus type 1

Query: 3   PVGTTYQK 10
           PVG  Y+K
Sbjct: 256 PVGDIYRK 263


>sp|GP_HANTB|ENVELOPMENT polyprotein|Hantaan virus (strain B-1) (Korean

Query: 2   EPVGTTYQ 9
           +PVGT ++
Sbjct: 786 KPVGTAFK 793


>sp|GP_SEOUS|ENVELOPMENT polyprotein|Seoul virus (strain SR-11) (Sapporo

Query: 2   EPVGTTYQ 9
           +PVGT ++
Sbjct: 786 KPVGTAFK 793


>sp|GP_SEOU8|ENVELOPMENT polyprotein|Seoul virus (strain 80-39)

Query: 2   EPVGTTYQ 9
           +PVGT ++
Sbjct: 786 KPVGTAFK 793




33|Sequence|161|170|TTYQKTDAAV

>sp|NCAP_I73A4|NUCLEOPROTEIN A virus (strain A/Equine/London/1416/1973

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I90A0|NUCLEOPROTEIN A virus (strain A/Shanghai/6/1990

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I88A2|NUCLEOPROTEIN A virus (strain A/Memphis/3/1988

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I89A4|NUCLEOPROTEIN A virus (strain A/Shanghai/16/1989

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I89A3|NUCLEOPROTEIN A virus (strain A/Guangdong/39/1989

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I89A2|NUCLEOPROTEIN A virus (strain A/Beijing/353/1989

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I89A1|NUCLEOPROTEIN A virus (strain A/Beijing/352/1989

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I89A0|NUCLEOPROTEIN A virus (strain A/Beijing/337/1989

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I88A3|NUCLEOPROTEIN A virus (strain A/Memphis/8/1988

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I87A2|NUCLEOPROTEIN A virus (strain A/Guangdong/9/1987

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I85A0|NUCLEOPROTEIN A virus (strain A/Memphis/14/1985

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I47A0|NUCLEOPROTEIN A virus (strain A/Fort

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I86A1|NUCLEOPROTEIN A virus (strain A/Memphis/6/1986

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I93A0|NUCLEOPROTEIN A virus (strain A/Kitakyushu/159/1993

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I80A3|NUCLEOPROTEIN A virus (strain A/Memphis/5/1980

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I73A3|NUCLEOPROTEIN A virus (strain A/Memphis/1/1973

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I60A0|NUCLEOPROTEIN A virus (strain A/Ann

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I83A8|NUCLEOPROTEIN A virus (strain A/Hong

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I77A4|NUCLEOPROTEIN A virus (strain A/Swine/Colorado/1/1977

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I73A5|NUCLEOPROTEIN A virus (strain A/Port

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I72A4|NUCLEOPROTEIN A virus (strain A/Memphis/101/1972

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I68A6|NUCLEOPROTEIN A virus (strain A/Northern

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I40A0|NUCLEOPROTEIN A virus (strain A/Hickox/1940

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I87A0|NUCLEOPROTEIN A virus (strain A/Shanghai/11/1987

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I68A4|NUCLEOPROTEIN A virus (strain A/Hong

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I73A2|NUCLEOPROTEIN A virus (strain A/Memphis/4/1973

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I80A4|NUCLEOPROTEIN A virus (strain A/Memphis/4/1980

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I72A2|NUCLEOPROTEIN A virus (strain A/Udorn/307/1972

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I77A5|NUCLEOPROTEIN A virus (strain A/Guangdong/38/1977

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I75A0|NUCLEOPROTEIN A virus (strain A/Beijing/39/1975

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I78A8|NUCLEOPROTEIN A virus (strain A/Memphis/18/1978

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I78A7|NUCLEOPROTEIN A virus (strain A/Memphis/2/1978

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I77AH|NUCLEOPROTEIN A virus (strain A/Texas/1/1977

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I76AA|NUCLEOPROTEIN A virus (strain A/Swine/Hong

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I76A6|NUCLEOPROTEIN A virus (strain A/Memphis/110/1976

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I71A1|NUCLEOPROTEIN A virus (strain A/Memphis/1/1971

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I50A0|NUCLEOPROTEIN A virus (strain A/Fort

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I78A6|NUCLEOPROTEIN A virus (strain A/California/10/1978

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I68A2|NUCLEOPROTEIN A virus (strain A/Victoria/5/1968

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I79A4|NUCLEOPROTEIN A virus (strain A/Kiev/59/1979

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I57A5|NUCLEOPROTEIN A virus (strain A/Singapore/1/1957

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I77AB|NUCLEOPROTEIN A virus (strain A/USSR/90/1977

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I77AA|NUCLEOPROTEIN A virus (strain A/Brazil/11/1978

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I55A0|NUCLEOPROTEIN A virus (strain A/England/19/1955

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I54A2|NUCLEOPROTEIN A virus (strain A/Malaysia:Malaya/302/1954

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I51A0|NUCLEOPROTEIN A virus (strain A/USA:Albany/12/1951

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I36A0|NUCLEOPROTEIN A virus (strain A/Henry/1936

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I96A2|NUCLEOPROTEIN A virus (strain A/USA:Memphis/10/1996

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I83A2|NUCLEOPROTEIN A virus (strain A/Ohio/4/1983

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I83A1|NUCLEOPROTEIN A virus (strain A/Chile/1/1983

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I80AA|NUCLEOPROTEIN A virus (strain A/India/6263/1980

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I96A3|NUCLEOPROTEIN A virus (strain A/China:Nanchang/11/1996

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I07A0|NUCLEOPROTEIN A virus (strain A/USA:Texas/UR06-0195/2007

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I00A1|NUCLEOPROTEIN A virus (strain A/New

Query: 1   TTYQKTDAAV 10
           TTYQ+T A V
Sbjct: 146 TTYQRTRALV 155


>sp|NCAP_I02A7|NUCLEOPROTEIN A virus (strain A/Teal/China/2978.1/2002

Query: 1   TTYQKTDAAV 10
           +TYQ+T A V
Sbjct: 146 STYQRTRALV 155


>sp|NCAP_I81A4|NUCLEOPROTEIN A virus (strain A/Swine/Ontario/2/1981

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I61A1|NUCLEOPROTEIN A virus (strain A/Swine/Wisconsin/1/1961

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I82A7|NUCLEOPROTEIN A virus (strain A/Swine/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I67A2|NUCLEOPROTEIN A virus (strain A/Swine/Wisconsin/1/1967

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I76AG|NUCLEOPROTEIN A virus (strain A/Swine/Italy/437/1976

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I54A1|NUCLEOPROTEIN A virus (strain A/Swine/May/1954

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I77AC|NUCLEOPROTEIN A virus (strain A/Swine/Tennessee/24/1977

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I57A7|NUCLEOPROTEIN A virus (strain A/Swine/Wisconsin/1/1957

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I81A1|NUCLEOPROTEIN A virus (strain A/Swine/Italy/141/1981

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I79A5|NUCLEOPROTEIN A virus (strain A/Swine/Italy/2/1979

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I76A7|NUCLEOPROTEIN A virus (strain A/New

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I37A0|NUCLEOPROTEIN A virus (strain A/Swine/29/1937

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I05A1|NUCLEOPROTEIN A virus (strain A/Goose/Guangxi/345/2005

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I80A2|NUCLEOPROTEIN A virus (strain A/Seal/Massachusetts/1/1980

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I02A4|NUCLEOPROTEIN A virus (strain A/Silky

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I01A1|NUCLEOPROTEIN A virus (strain A/Chicken/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I88A7|NUCLEOPROTEIN A virus (strain A/Wisconsin/3523/1988

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I88A5|NUCLEOPROTEIN A virus (strain A/Swine/Iowa/17672/1988

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I35A2|NUCLEOPROTEIN A virus (strain A/Swine/Ohio/23/1935

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I03A0|NUCLEOPROTEIN A virus (strain A/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I02A3|NUCLEOPROTEIN A virus (strain A/Chicken/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I02A2|NUCLEOPROTEIN A virus (strain A/Chicken/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I02A1|NUCLEOPROTEIN A virus (strain A/Guinea

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I97A1|NUCLEOPROTEIN A virus (strain A/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I78A3|NUCLEOPROTEIN A virus (strain A/Mallard/New

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I02A6|NUCLEOPROTEIN A virus (strain A/Chicken/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I02A5|NUCLEOPROTEIN A virus (strain A/Chicken/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I01A3|NUCLEOPROTEIN A virus (strain A/Chicken/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I42A0|NUCLEOPROTEIN A virus (strain A/Swine/Jamesburg/1942

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I01A0|NUCLEOPROTEIN A virus (strain A/Silky

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I89A6|NUCLEOPROTEIN A virus (strain A/Swine/Italy/839/1989

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I81A0|NUCLEOPROTEIN A virus (strain A/Swine/Germany/2/1981

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I80A1|NUCLEOPROTEIN A virus (strain A/Duck/Australia/749/1980

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I77A3|NUCLEOPROTEIN A virus (strain A/Duck/Bavaria/2/1977

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I30A0|NUCLEOPROTEIN A virus (strain A/Swine/Iowa/15/1930

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I27A0|NUCLEOPROTEIN A virus (strain A/Fowl

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I03A1|NUCLEOPROTEIN A virus (strain A/Chicken/Shantou/4231/2003

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I01A2|NUCLEOPROTEIN A virus (strain A/Chicken/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I00A0|NUCLEOPROTEIN A virus (strain A/Duck/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I82A4|NUCLEOPROTEIN A virus (strain A/Swine/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I76AF|NUCLEOPROTEIN A virus (strain A/Swine/Iowa/1976/1931

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I56A3|NUCLEOPROTEIN A virus (strain A/Equine/Prague/1/1956

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I49A2|NUCLEOPROTEIN A virus (strain A/Swine/41/1949

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I46A1|NUCLEOPROTEIN A virus (strain A/Swine/Iowa/1946

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I59A0|NUCLEOPROTEIN A virus (strain A/Chicken/Scotland/1959

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I96A0|NUCLEOPROTEIN A virus (strain A/Goose/Guangdong/1/1996

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I75A2|NUCLEOPROTEIN A virus (strain A/Duck/Hong

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I81A3|NUCLEOPROTEIN A virus (strain A/Turkey/Minnesota/1661/1981

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I85A4|NUCLEOPROTEIN A virus (strain A/Swine/Netherlands/12/1985

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I80A5|NUCLEOPROTEIN A virus (strain A/Teal/Iceland/29/1980

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I80A0|NUCLEOPROTEIN A virus (strain A/Shanghai/31/1980

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I33A0|NUCLEOPROTEIN A virus (strain A/Wilson-Smith/1933

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I18A0|NUCLEOPROTEIN A virus (strain A/Brevig

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I83A0|NUCLEOPROTEIN A virus (strain A/Swine/Dandong/9/1983

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I34A1|NUCLEOPROTEIN A virus (strain A/Puerto

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I06A0|NUCLEOPROTEIN A virus (strain A/Russia:St.Petersburg/8/2006

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I54A0|NUCLEOPROTEIN A virus (strain A/Leningrad/1/1954

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I35A1|NUCLEOPROTEIN A virus (strain A/Swine/Cambridge/1/1935

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|DPOL_HCMVM|DNA polymerase catalytic subunit|Human cytomegalovirus (strain Merlin)

Query: 2   TYQKTDAAV 10
           TY +TDA +
Sbjct: 103 TYDQTDAVL 111


>sp|DPOL_HCMVA|DNA polymerase catalytic subunit|Human cytomegalovirus (strain AD169)

Query: 2   TYQKTDAAV 10
           TY +TDA +
Sbjct: 103 TYDQTDAVL 111


>sp|FUS_PIV5|FUSION glycoprotein F0|Parainfluenza virus 5 (strain W3)

Query: 4   QKTDAAV 10
           QKT+AAV
Sbjct: 145 QKTNAAV 151


>sp|NCAP_I43A0|NUCLEOPROTEIN A virus (strain A/USA:Iowa/1943

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I35A3|NUCLEOPROTEIN A virus (strain A/USA:Phila/1935

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|NCAP_I45A0|NUCLEOPROTEIN A virus (strain A/USA:Huston/AA/1945

Query: 2   TYQKTDAAV 10
           TYQ+T A V
Sbjct: 147 TYQRTRALV 155


>sp|OBP_HHV6Z|REPLICATION origin-binding protein|Human herpesvirus 6B (strain Z29)

Query: 1  TTYQKTDAAV 10
          T Y + D+AV
Sbjct: 29 TVYSQADSAV 38


>sp|OBP_HHV6U|REPLICATION origin-binding protein|Human herpesvirus 6A (strain Uganda-1102)

Query: 1  TTYQKTDAAV 10
          T Y + D+AV
Sbjct: 29 TVYSQADSAV 38


>sp|POLS_SFV|STRUCTURAL polyprotein|Semliki forest virus (SFV)

Query: 1   TTYQKTDA 8
           TTYQ+T A
Sbjct: 487 TTYQQTTA 494


>sp|POLSF_SFV|FRAMESHIFTED structural polyprotein|Semliki forest virus (SFV)

Query: 1   TTYQKTDA 8
           TTYQ+T A
Sbjct: 487 TTYQQTTA 494




34|Sequence|166|175|TDAAVEMKRI

>sp|U79_HHV6U|PROTEIN U79/U80|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   TDAAVEMKRI 10
           TD A+E +R+
Sbjct: 401 TDGAIEQQRV 410


>sp|ETF2_MCV1|EARLY transcription factor 82 kDa|Molluscum contagiosum virus subtype 1

Query: 1   TDAAVEMKRI 10
           TD+ ++M+RI
Sbjct: 258 TDSNLQMERI 267




35|Sequence|171|180|EMKRINREQF

>sp|POLG_KOKV|GENOME polyprotein|Kokobera virus (KOKV)

Query: 3    KRINREQ 9
            KR+NRE+
Sbjct: 2892 KRLNREK 2898


>sp|POLG_DEN26|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    MKRINREQ 9
            MKR  RE+
Sbjct: 3377 MKRFRREE 3384


>sp|POLG_DEN2P|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    MKRINREQ 9
            MKR  RE+
Sbjct: 3374 MKRFRREE 3381


>sp|POLG_DEN28|GENOME polyprotein|Dengue virus type 2 (isolate

Query: 2    MKRINREQ 9
            MKR  RE+
Sbjct: 3377 MKRFRREE 3384


>sp|POLG_DEN2Q|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    MKRINREQ 9
            MKR  RE+
Sbjct: 3377 MKRFRREE 3384


>sp|POLG_DEN2J|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    MKRINREQ 9
            MKR  RE+
Sbjct: 3377 MKRFRREE 3384


>sp|POLG_DEN27|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    MKRINREQ 9
            MKR  RE+
Sbjct: 3377 MKRFRREE 3384


>sp|HEMA_I59A0|HEMAGGLUTININ A virus (strain A/Chicken/Scotland/1959

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 506 EEARLNREE 514


>sp|HEMA_I02A5|HEMAGGLUTININ A virus (strain A/Chicken/Hong

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 510 EEARLNREE 518


>sp|HEMA_I96A0|HEMAGGLUTININ A virus (strain A/Goose/Guangdong/1/1996

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 510 EEARLNREE 518


>sp|HEMA_I02A3|HEMAGGLUTININ A virus (strain A/Chicken/Hong

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 510 EEARLNREE 518


>sp|HEMA_I01A3|HEMAGGLUTININ A virus (strain A/Chicken/Hong

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 499 EEARLNREE 507


>sp|HEMA_I01A0|HEMAGGLUTININ A virus (strain A/Silky

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 499 EEARLNREE 507


>sp|HEMA_I02A1|HEMAGGLUTININ A virus (strain A/Guinea

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 508 EEARLNREE 516


>sp|HEMA_I01A1|HEMAGGLUTININ A virus (strain A/Chicken/Hong

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 499 EEARLNREE 507


>sp|HEMA_I00A0|HEMAGGLUTININ A virus (strain A/Duck/Hong

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 510 EEARLNREE 518


>sp|HEMA_I97A1|HEMAGGLUTININ A virus (strain A/Hong

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 510 EEARLNREE 518


>sp|HEMA_I97A0|HEMAGGLUTININ A virus (strain A/Chicken/Hong

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 510 EEARLNREE 518


>sp|HEMA_I02A7|HEMAGGLUTININ A virus (strain A/Teal/China/2978.1/2002

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 506 EEARLNREE 514


>sp|HEMA_I02A4|HEMAGGLUTININ A virus (strain A/Silky

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 510 EEARLNREE 518


>sp|HEMA_I02A2|HEMAGGLUTININ A virus (strain A/Chicken/Hong

Query: 1   EMKRINREQ 9
           E  R+NRE+
Sbjct: 510 EEARLNREE 518




36|Sequence|176|185|NREQFWEQAK

>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related coronavirus

Query: 1    NREQFWEQA 9
            N  +FWE+A
Sbjct: 5289 NSAKFWEEA 5297


>sp|PRIM_HHV8P|DNA primase|Human herpesvirus 8 type P

Query: 3   EQFWEQA 9
           E++WEQ+
Sbjct: 437 ERYWEQS 443


>sp|POLG_HCVVP|GENOME polyprotein|Hepatitis C virus genotype 6h

Query: 3    EQFWEQ 8
            EQFW++
Sbjct: 1759 EQFWQK 1764


>sp|POLG_HCVVO|GENOME polyprotein|Hepatitis C virus genotype 6k

Query: 3    EQFWEQ 8
            EQFW++
Sbjct: 1760 EQFWQK 1765


>sp|POLG_HCVVN|GENOME polyprotein|Hepatitis C virus genotype 6d

Query: 3    EQFWEQ 8
            EQFW++
Sbjct: 1756 EQFWQK 1761


>sp|VE7_HPV61|PROTEIN E7|Human papillomavirus type 61

Query: 2  REQFWEQAK 10
          REQ  EQA+
Sbjct: 41 REQLVEQAQ 49


>sp|TOP1_VACCC|DNA topoisomerase 1B|Vaccinia virus (strain Copenhagen) (VACV)

Query: 3  EQFWEQA 9
          EQ WE+A
Sbjct: 47 EQTWEEA 53


>sp|TOP1_VACCA|DNA topoisomerase 1B|Vaccinia virus (strain Ankara) (VACV)

Query: 3  EQFWEQA 9
          EQ WE+A
Sbjct: 47 EQTWEEA 53


>sp|TOP1_MONPV|DNA topoisomerase I|Monkeypox virus (MPXV)

Query: 3  EQFWEQA 9
          EQ WE+A
Sbjct: 47 EQTWEEA 53


>sp|POLG_HCVSA|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 1    NR-EQFWEQ 8
            NR EQFW +
Sbjct: 1756 NRAEQFWAK 1764


>sp|POLG_HCVVA|GENOME polyprotein|Hepatitis C virus genotype 2k

Query: 3    EQFWEQ 8
            EQFW +
Sbjct: 1762 EQFWAK 1767


>sp|POLG_HCVJ8|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 3    EQFWEQ 8
            EQFW +
Sbjct: 1762 EQFWAK 1767


>sp|POLG_HCVJ6|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 3    EQFWEQ 8
            EQFW +
Sbjct: 1762 EQFWAK 1767


>sp|POLG_HCVEV|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 3    EQFWEQ 8
            EQFW +
Sbjct: 1759 EQFWAK 1764


>sp|POLG_HCVBB|GENOME polyprotein|Hepatitis C virus genotype 2c

Query: 3    EQFWEQ 8
            EQFW +
Sbjct: 1762 EQFWAK 1767


>sp|POLG_HCVJP|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 3    EQFWEQ 8
            EQFW +
Sbjct: 1762 EQFWAR 1767


>sp|POLG_HCVJF|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 3    EQFWEQ 8
            EQFW +
Sbjct: 1762 EQFWAR 1767


>sp|RDRP_INBAD|RNA-DIRECTED RNA polymerase catalytic subunit|Influenza B virus (strain B/Ann

Query: 1   NREQFWE 7
           NRE  W+
Sbjct: 432 NREYLWD 438


>sp|LTP_HHV6G|LARGE tegument protein deneddylase|Human herpesvirus 6A (strain GS)

Query: 3    EQFWE 7
            +QFWE
Sbjct: 1583 QQFWE 1587


>sp|LTP_HHV6U|LARGE tegument protein deneddylase|Human herpesvirus 6A (strain

Query: 3    EQFWE 7
            +QFWE
Sbjct: 1583 QQFWE 1587


>sp|VE1_HPVR7|REPLICATION protein E1|Human papillomavirus type RTRX7

Query: 1   NREQFWEQ 8
           +R QFW Q
Sbjct: 459 SRSQFWLQ 466


>sp|LTP_HHV6Z|LARGE tegument protein deneddylase|Human herpesvirus 6B (strain Z29)

Query: 3    EQFWE 7
            +QFWE
Sbjct: 1583 QQFWE 1587


>sp|A57_VACCC|GUANYLATE kinase homolog|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1  NREQFWE 7
          NRE  W+
Sbjct: 12 NREAIWK 18


>sp|CAPSH_ADE08|HEXON protein|Human adenovirus D serotype 8

Query: 6  WEQAK 10
          WEQAK
Sbjct: 35 WEQAK 39




37|Sequence|181|190|WEQAKKEEEL

>sp|L_PI2HT|RNA-DIRECTED RNA polymerase L|Human parainfluenza 2 virus (strain

Query: 1  WEQAKKEE 8
          W+Q  +EE
Sbjct: 49 WDQIAREE 56


>sp|ENV_HV2KR|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   WEQAKKEE 8
           WEQ  +EE
Sbjct: 719 WEQPDREE 726


>sp|RAP94_VACCC|RNA polymerase-associated transcription-specificity factor

Query: 1  WEQAKKEE 8
          +EQA KEE
Sbjct: 84 FEQAVKEE 91


>sp|RAP94_VACCA|RNA polymerase-associated transcription-specificity factor

Query: 1  WEQAKKEE 8
          +EQA KEE
Sbjct: 84 FEQAVKEE 91


>sp|ENV_HV2SB|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   WEQAKKEE 8
           WEQ  +EE
Sbjct: 719 WEQPDREE 726


>sp|VP2_ROTH7|INNER capsid protein VP2|Rotavirus A (isolate RVA/Human/United

Query: 2   EQAKKEEEL 10
           EQAKK+ +L
Sbjct: 114 EQAKKQTKL 122


>sp|VP2_ROTH6|INNER capsid protein VP2|Rotavirus A (strain

Query: 2   EQAKKEEEL 10
           EQAKK+ +L
Sbjct: 114 EQAKKQTKL 122


>sp|VP2_ROT41|INNER capsid protein VP2|Rotavirus A (isolate

Query: 2   EQAKKEEEL 10
           EQAKK+ +L
Sbjct: 114 EQAKKQTKL 122


>sp|VP2_ROTH3|INNER capsid protein VP2|Rotavirus A (strain

Query: 2   EQAKKEEEL 10
           EQAKK+ +L
Sbjct: 121 EQAKKQTKL 129


>sp|NEC2_HHV6Z|NUCLEAR egress protein 2|Human herpesvirus 6B (strain Z29)

Query: 1  WEQAKKEE 8
          WE   K+E
Sbjct: 64 WEHVTKQE 71




38|Sequence|186|195|KEEELRKEEE

>sp|POLG_HRV8A|GENOME polyprotein|Human rhinovirus A serotype 89

Query: 2    EEELRKEEE 10
            ++ELRK+E+
Sbjct: 1863 KDELRKKEK 1871


>sp|POLG_HRV1B|GENOME polyprotein|Human rhinovirus 1B (HRV-1B)

Query: 2    EEELRKEEE 10
            ++ELRK+E+
Sbjct: 1856 KDELRKKEK 1864


>sp|POLG_HRV1A|GENOME polyprotein|Human rhinovirus 1A (HRV-1A)

Query: 2    EEELRKEEE 10
            ++ELRK+E+
Sbjct: 1856 KDELRKKEK 1864


>sp|POLG_LJUV1|GENOME polyprotein|Ljunganvirus 1 (LV) (Ljungan virus

Query: 2    EEELRKEEE 10
            ++ELRK+E+
Sbjct: 1950 KDELRKKEK 1958


>sp|POLG_WSLV|GENOME polyprotein|Wesselsbron virus (WSLV)

Query: 2    EEELRKEEE 10
            EE+L  E+E
Sbjct: 3044 EEDLEDEQE 3052




39|Sequence|191|200|RKEEERKKAL

>sp|GB_HHV8P|ENVELOPE glycoprotein B|Human herpesvirus 8 type P

Query: 2   KEEERKKA 9
           ++EER+KA
Sbjct: 798 QQEERQKA 805




40|Sequence|196|205|RKKALDERLR

>sp|POLG_TMUV|GENOME polyprotein|Tembusu virus (TMUV)

Query: 2    KKALDERLR 10
            K A+D+RLR
Sbjct: 1708 KSAIDKRLR 1716


>sp|DNBI_ADE12|PROBABLE DNA-binding protein|Human adenovirus A serotype 12

Query: 2  KKALDERLR 10
          KKAL  R+R
Sbjct: 37 KKALSARMR 45




41|Sequence|201|210|DERLRFEQER

>sp|PG034_MONPV|PROTEIN OPG034|Monkeypox virus (MPXV)

Query: 1   DERLRFEQE 9
           D+RL+F++E
Sbjct: 202 DDRLKFKKE 210


>sp|LTP_HHV6U|LARGE tegument protein deneddylase|Human herpesvirus 6A (strain

Query: 3    RLRFEQER 10
            RLR E+ER
Sbjct: 1504 RLRIERER 1511


>sp|LTP_HHV6G|LARGE tegument protein deneddylase|Human herpesvirus 6A (strain GS)

Query: 3    RLRFEQER 10
            RLR E+ER
Sbjct: 1504 RLRIERER 1511


>sp|POLG_SVM10|GENOME polyprotein|Sapporo virus (isolate

Query: 1    DERLRFEQ 8
            DER +F Q
Sbjct: 1257 DERYKFSQ 1264


>sp|BDLF2_EBVB9|PROTEIN BDLF2|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2   ERLRFEQE 9
           ER+RF+++
Sbjct: 162 ERMRFKED 169


>sp|BDLF2_EBVA8|PROTEIN BDLF2|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 2   ERLRFEQE 9
           ER+RF+++
Sbjct: 162 ERMRFKED 169


>sp|BDLF2_EBVG|PROTEIN BDLF2|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 2   ERLRFEQE 9
           ER+RF+++
Sbjct: 162 ERMRFKED 169


>sp|US11_HCMVT|UNIQUE short US11 glycoprotein|Human cytomegalovirus (strain Towne)

Query: 2   ERLRFEQER 10
           ERL FE  R
Sbjct: 161 ERLLFEDRR 169


>sp|US11_HCMVM|MEMBRANE glycoprotein US11|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2   ERLRFEQER 10
           ERL FE  R
Sbjct: 161 ERLLFEDRR 169


>sp|US11_HCMVA|UNIQUE short US11 glycoprotein|Human cytomegalovirus (strain AD169)

Query: 2   ERLRFEQER 10
           ERL FE  R
Sbjct: 161 ERLLFEDRR 169




42|Sequence|206|215|FEQERMEQER

>sp|DYR_HHV8P|PUTATIVE Dihydrofolate reductase|Human herpesvirus 8 type P

Query: 2   EQERMEQER 10
           EQER+ QER
Sbjct: 165 EQERVFQER 173


>sp|ENV_HV1MP|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QER EQE
Sbjct: 639 QQERNEQE 646


>sp|POLG_POL3L|GENOME polyprotein|Poliovirus type 3 (strains P3/Leon/37

Query: 1    FEQERMEQ 8
            +E+E MEQ
Sbjct: 1020 YEEEAMEQ 1027


>sp|POLG_POL32|GENOME polyprotein|Poliovirus type 3 (strain 23127)

Query: 1    FEQERMEQ 8
            +E+E MEQ
Sbjct: 1020 YEEEAMEQ 1027


>sp|POLG_POL2L|GENOME polyprotein|Poliovirus type 2 (strain Lansing)

Query: 1    FEQERMEQ 8
            +E+E MEQ
Sbjct: 1021 YEEEAMEQ 1028


>sp|POLG_POL1S|GENOME polyprotein|Poliovirus type 1 (strain Sabin)

Query: 1    FEQERMEQ 8
            +E+E MEQ
Sbjct: 1023 YEEEAMEQ 1030


>sp|POLG_POL1M|GENOME polyprotein|Poliovirus type 1 (strain Mahoney)

Query: 1    FEQERMEQ 8
            +E+E MEQ
Sbjct: 1023 YEEEAMEQ 1030


>sp|POLG_CXA24|GENOME polyprotein|Coxsackievirus A24 (strain EH24/70)

Query: 1    FEQERMEQ 8
            +E+E MEQ
Sbjct: 1028 YEEEAMEQ 1035


>sp|POLG_CXA21|GENOME polyprotein|Coxsackievirus A21 (strain Coe)

Query: 1    FEQERMEQ 8
            +E+E MEQ
Sbjct: 1021 YEEEAMEQ 1028


>sp|ENV_HV1S3|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 648 QQEKNEQE 655


>sp|POLN_SFV|POLYPROTEIN P1234|Semliki forest virus (SFV)

Query: 2   EQERMEQE 9
           E+ER+E E
Sbjct: 497 EKERLEAE 504


>sp|ENV_HV1VI|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 628 QQEKNEQE 635


>sp|ENV_HV1RH|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 661 QQEKNEQE 668


>sp|ENV_HV1LW|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV193|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 642 QQEKNEQE 649


>sp|ENV_HV1Z6|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 651 QQEKNEQE 658


>sp|ENV_HV1SC|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV1MN|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 653 QQEKNEQE 660


>sp|ENV_HV1H3|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV1H2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV1B1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV1Z2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 649 QQEKNEQE 656


>sp|ENV_HV1W1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV1S1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 643 QQEKNEQE 650


>sp|ENV_HV1MF|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 650 QQEKNEQE 657


>sp|ENV_HV1BR|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 657 QQEKNEQE 664


>sp|ENV_HV1B8|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 647 QQEKNEQE 654


>sp|ENV_HV1Y2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 639 QQEKNEQE 646


>sp|ENV_HV1J3|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 663 QQEKNEQE 670


>sp|ENV_HV1A2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 651 QQEKNEQE 658


>sp|ENV_HV1JR|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 644 QQEKNEQE 651


>sp|ENV_HV1OY|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERMEQE 9
           +QE+ EQE
Sbjct: 651 QQEKNEQE 658




43|Sequence|211|220|MEQERQEQEE

>sp|ENV_HV1MP|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QER EQE
Sbjct: 639 QQERNEQE 646


>sp|ENV_HV1S3|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 648 QQEKNEQE 655


>sp|ENV_HV1VI|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 628 QQEKNEQE 635


>sp|POLG_LJUV1|GENOME polyprotein|Ljunganvirus 1 (LV) (Ljungan virus

Query: 1    MEQERQE 7
            MEQ RQE
Sbjct: 1087 MEQMRQE 1093


>sp|ENV_HV1RH|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 661 QQEKNEQE 668


>sp|ENV_HV193|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 642 QQEKNEQE 649


>sp|ENV_HV1SC|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|POLG_ILHV|GENOME polyprotein|Ilheus virus (ILHV)

Query: 2    EQERQEQE 9
            + ERQE+E
Sbjct: 1664 QGERQEEE 1671


>sp|ENV_HV1W1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV1MN|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 653 QQEKNEQE 660


>sp|ENV_HV1LW|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV1H2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV1Z6|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 651 QQEKNEQE 658


>sp|ENV_HV1S1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 643 QQEKNEQE 650


>sp|ENV_HV1MF|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 650 QQEKNEQE 657


>sp|ENV_HV1H3|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV1B1|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 652 QQEKNEQE 659


>sp|ENV_HV1BR|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 657 QQEKNEQE 664


>sp|ENV_HV1B8|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 647 QQEKNEQE 654


>sp|ENV_HV1Z2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 649 QQEKNEQE 656


>sp|ENV_HV1JR|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 1   MEQERQEQE 9
           ++QE+ EQE
Sbjct: 643 IQQEKNEQE 651


>sp|POLG_ROCV|GENOME polyprotein|Rocio virus (ROCV)

Query: 2    EQERQEQE 9
            + ERQE+E
Sbjct: 1664 QGERQEEE 1671


>sp|ENV_HV1Y2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 639 QQEKNEQE 646


>sp|ENV_HV1A2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 651 QQEKNEQE 658


>sp|ENV_HV1J3|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 663 QQEKNEQE 670


>sp|ENV_HV1OY|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   EQERQEQE 9
           +QE+ EQE
Sbjct: 651 QQEKNEQE 658


>sp|ENV_HV1Z8|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 1   MEQERQEQE 9
           ++QE+ EQ+
Sbjct: 658 IQQEKNEQD 666




44|Sequence|216|225|QEQEERERRY

>sp|RIR1_MONPV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Monkeypox virus (MPXV)

Query: 5   ERERRY 10
           ERERRY
Sbjct: 375 ERERRY 380


>sp|RIR1_VACCC|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Copenhagen) (VACV)

Query: 5   ERERRY 10
           ERERRY
Sbjct: 375 ERERRY 380


>sp|RIR1_VACCA|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Ankara) (VACV)

Query: 5   ERERRY 10
           ERERRY
Sbjct: 375 ERERRY 380


>sp|POLN_SFV|POLYPROTEIN P1234|Semliki forest virus (SFV)

Query: 2   EQEERER 8
           EQEE+ER
Sbjct: 494 EQEEKER 500


>sp|RIR1_VARV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Variola virus

Query: 5   ERERRY 10
           ERE+RY
Sbjct: 375 EREKRY 380


>sp|RIR1_VAR67|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Variola virus (isolate

Query: 5   ERERRY 10
           ERE+RY
Sbjct: 375 EREKRY 380


>sp|CAPSD_TTVV7|CAPSID protein|Torque teno virus (isolate Human/China/CT39F/2001)

Query: 1   QEQEERERR 9
           QE+++RE+R
Sbjct: 675 QERQQREQR 683


>sp|POLG_BUSV|GENOME polyprotein|Bussuquara virus (BUSV)

Query: 1    QEQEER 6
            Q+QEER
Sbjct: 1939 QDQEER 1944


>sp|LTP_EBVB9|LARGE tegument protein deneddylase|Epstein-Barr virus (strain B95-8)

Query: 1    QEQEERERR 9
            +EQE++ER+
Sbjct: 1420 REQEDKERQ 1428


>sp|HBZ_HTL1A|HTLV-1 basic zipper factor|Human T-cell leukemia virus 1

Query: 1   QEQEERERRY 10
           +EQE RER++
Sbjct: 133 EEQERRERKW 142


>sp|CAPSD_CTFVL|INNER capsid protein VP2|Colorado tick fever virus (strain

Query: 4   EERERRY 10
           E+RERR+
Sbjct: 781 EDRERRF 787


>sp|HBZ_HTL1C|HTLV-1 basic zipper factor|Human T-cell leukemia virus 1

Query: 1   QEQEERERRY 10
           +EQE RER++
Sbjct: 133 EEQERRERKW 142




45|Sequence|221|230|RERRYREREQ

>sp|RIR1_MONPV|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Monkeypox virus (MPXV)

Query: 1   RERRYR 6
           RERRY+
Sbjct: 376 RERRYK 381


>sp|RIR1_VACCC|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1   RERRYR 6
           RERRY+
Sbjct: 376 RERRYK 381


>sp|RIR1_VACCA|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Vaccinia virus (strain Ankara) (VACV)

Query: 1   RERRYR 6
           RERRY+
Sbjct: 376 RERRYK 381


>sp|UL49_HHV6Z|PROTEIN U33|Human herpesvirus 6B (strain Z29)

Query: 4   RYREREQ 10
           RYR+RE 
Sbjct: 189 RYRQREH 195


>sp|RIR1_HCMVA|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit-like protein|Human cytomegalovirus (strain

Query: 3   RRYREREQ 10
           +RYR REQ
Sbjct: 492 KRYRAREQ 499


>sp|RIR1_HCMVM|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit-like protein|Human cytomegalovirus (strain

Query: 3   RRYREREQ 10
           +RYR REQ
Sbjct: 492 KRYRAREQ 499


>sp|UL49_HHV6U|PROTEIN U33|Human herpesvirus 6A (strain Uganda-1102)

Query: 4   RYREREQ 10
           RYR+RE 
Sbjct: 189 RYRQREH 195


>sp|BEL1_FOAMV|PROTEIN Bel-1|Human spumaretrovirus (SFVcpz(hu)) (Human foamy

Query: 1  RERRYRERE 9
          R RRY +RE
Sbjct: 48 RPRRYTKRE 56


>sp|PRO_ADE41|PROTEASE adenovirus F serotype 41

Query: 3   RRYRER 8
           RR+RER
Sbjct: 186 RRHRER 191


>sp|VE2_HPV61|REGULATORY protein E2|Human papillomavirus type 61

Query: 1   RERRYREREQ 10
           R+R +R+REQ
Sbjct: 253 RQRLHRDREQ 262




46|Sequence|226|235|REREQQIEEH

>sp|LTP_HHV2H|LARGE tegument protein deneddylase|Human herpesvirus 2 (strain HG52)

Query: 1    REREQQIE 8
            RER  QIE
Sbjct: 1617 RERRAQIE 1624


>sp|POLG_HCVJL|GENOME polyprotein|Hepatitis C virus genotype 6g

Query: 2    EREQQIEEH 10
            +R+Q +++H
Sbjct: 2486 DRQQVVDQH 2494




47|Sequence|231|240|QIEEHRRKQQ

>sp|VU4_HHV6Z|PROTEIN U4|Human herpesvirus 6B (strain Z29)

Query: 1   QIEEHRRKQQ 10
           +++EHRR+Q+
Sbjct: 492 RLQEHRRRQK 501


>sp|VU4_HHV6U|PROTEIN U4|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   QIEEHRRKQQ 10
           +++EHRR+Q+
Sbjct: 492 RLQEHRRRQK 501


>sp|POLG_HRV2|GENOME polyprotein|Human rhinovirus 2 (HRV-2)

Query: 2    IEEHRRKQQ 10
            IEE RR++Q
Sbjct: 1391 IEEDRRRRQ 1399


>sp|POL_HV1S9|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   QIEEHRRK 8
           +IE+HRRK
Sbjct: 778 EIEQHRRK 785


>sp|POL_HV1S2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   QIEEHRRK 8
           +IE+HRRK
Sbjct: 778 EIEQHRRK 785


>sp|VGP_EBOZM|ENVELOPE glycoprotein|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)

Query: 1   QIEEHRRK 8
           Q+E+H R+
Sbjct: 403 QVEQHHRR 410


>sp|VGP_EBOEC|ENVELOPE glycoprotein|Zaire ebolavirus (strain Eckron-76) (ZEBOV)

Query: 1   QIEEHRRK 8
           Q+E+H R+
Sbjct: 403 QVEQHHRR 410


>sp|VGP_EBOZ5|ENVELOPE glycoprotein|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)

Query: 1   QIEEHRRK 8
           Q+E+H R+
Sbjct: 403 QVEQHHRR 410


>sp|M2_I88A7|MATRIX protein 2|Influenza A virus (strain A/Wisconsin/3523/1988

Query: 3  EEHRRKQQ 10
          EE+R+KQQ
Sbjct: 74 EEYRQKQQ 81


>sp|VGP_EBOG4|ENVELOPE glycoprotein|Zaire ebolavirus (strain Gabon-94) (ZEBOV)

Query: 1   QIEEHRRK 8
           Q+E+H R+
Sbjct: 403 QVEQHHRR 410


>sp|M2_I81A4|MATRIX protein 2|Influenza A virus (strain A/Swine/Ontario/2/1981

Query: 3  EEHRRKQQ 10
          EE+R+KQQ
Sbjct: 74 EEYRQKQQ 81


>sp|M2_I61A1|MATRIX protein 2|Influenza A virus (strain A/Swine/Wisconsin/1/1961

Query: 3  EEHRRKQQ 10
          EE+R+KQQ
Sbjct: 74 EEYRQKQQ 81


>sp|M2_I34A1|MATRIX protein 2|Influenza A virus (strain A/Puerto

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|RP147_VARV|DNA-DIRECTED RNA polymerase 147 kDa|Variola virus

Query: 1   QIEEHRRK 8
           +IEEH R+
Sbjct: 644 EIEEHMRQ 651


>sp|RP147_VAR67|DNA-DIRECTED RNA polymerase 147 kDa|Variola virus (isolate

Query: 1   QIEEHRRK 8
           +IEEH R+
Sbjct: 644 EIEEHMRQ 651


>sp|RP147_VACCA|DNA-DIRECTED RNA polymerase 147 kDa|Vaccinia virus (strain Ankara) (VACV)

Query: 1   QIEEHRRK 8
           +IEEH R+
Sbjct: 644 EIEEHMRQ 651


>sp|RP147_VACCC|DNA-DIRECTED RNA polymerase 147 kDa|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1   QIEEHRRK 8
           +IEEH R+
Sbjct: 644 EIEEHMRQ 651


>sp|RP147_MONPV|DNA-DIRECTED RNA polymerase 147 kDa|Monkeypox virus (MPXV)

Query: 1   QIEEHRRK 8
           +IEEH R+
Sbjct: 644 EIEEHMRQ 651


>sp|M2_I06A0|MATRIX protein 2|Influenza A virus (strain A/Russia:St.Petersburg/8/2006

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I000X|MATRIX protein 2|Influenza A virus (strain A/X-31

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I54A1|MATRIX protein 2|Influenza A virus (strain A/Swine/May/1954

Query: 3  EEHRRKQQ 10
          EE+R+KQQ
Sbjct: 74 EEYRQKQQ 81


>sp|M2_I37A0|MATRIX protein 2|Influenza A virus (strain A/Swine/29/1937

Query: 3  EEHRRKQQ 10
          EE+R+KQQ
Sbjct: 74 EEYRQKQQ 81


>sp|M2_I36A0|MATRIX protein 2|Influenza A virus (strain A/Henry/1936

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|VIRF3_HHV8P|VIRAL IRF3-like protein|Human herpesvirus 8 type P

Query: 1   QIEEHRRK 8
           ++E+HRR+
Sbjct: 143 RLEKHRRR 150


>sp|UL64_HCMVA|UNCHARACTERIZED protein UL64|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1  QIEEHRRKQQ 10
          QI+E R+K++
Sbjct: 55 QIQEMRKKKE 64


>sp|M2_I80A4|MATRIX protein 2|Influenza A virus (strain A/Memphis/4/1980

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I59A0|MATRIX protein 2|Influenza A virus (strain A/Chicken/Scotland/1959

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|UL87_HCMVA|PROTEIN UL87|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   EEHRRKQQ 10
           +EHRR++ 
Sbjct: 519 QEHRRRKH 526


>sp|M2_I88A5|MATRIX protein 2|Influenza A virus (strain A/Swine/Iowa/17672/1988

Query: 3  EEHRRKQQ 10
          EE+R+KQQ
Sbjct: 74 EEYRQKQQ 81


>sp|M2_I72A4|MATRIX protein 2|Influenza A virus (strain A/Memphis/101/1972

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I67A2|MATRIX protein 2|Influenza A virus (strain A/Swine/Wisconsin/1/1967

Query: 3  EEHRRKQQ 10
          EE+R+KQQ
Sbjct: 74 EEYRQKQQ 81


>sp|UL87_HCMVM|UNCHARACTERIZED protein UL87|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   EEHRRKQQ 10
           +EHRR++ 
Sbjct: 519 QEHRRRKH 526


>sp|NSP1N_ROTJ1|NON-STRUCTURAL protein 1|Rotavirus X (strain

Query: 1   QIEEHRRK 8
           Q EE+RRK
Sbjct: 256 QFEENRRK 263


>sp|M2_I85A4|MATRIX protein 2|Influenza A virus (strain A/Swine/Netherlands/12/1985

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|M2_I77AC|MATRIX protein 2|Influenza A virus (strain A/Swine/Tennessee/24/1977

Query: 3  EEHRRKQQ 10
          EE+R+KQQ
Sbjct: 74 EEYRQKQQ 81


>sp|M2_I60A0|MATRIX protein 2|Influenza A virus (strain A/Ann

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I71A1|MATRIX protein 2|Influenza A virus (strain A/Memphis/1/1971

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I68A5|MATRIX protein 2|Influenza A virus (strain A/Korea/426/1968

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I67A0|MATRIX protein 2|Influenza A virus (strain A/Tokyo/3/1967

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I35A3|MATRIX protein 2|Influenza A virus (strain A/USA:Phila/1935

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I69A0|MATRIX protein 2|Influenza A virus (strain A/England/878/1969

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I57A5|MATRIX protein 2|Influenza A virus (strain A/Singapore/1/1957

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I79A0|MATRIX protein 2|Influenza A virus (strain A/Bangkok/1/1979

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|NSP1N_ROTB2|NON-STRUCTURAL protein 1|Rotavirus X (isolate

Query: 1   QIEEHRRK 8
           Q EE+RRK
Sbjct: 256 QFEENRRK 263


>sp|M2_I89A2|MATRIX protein 2|Influenza A virus (strain A/Beijing/353/1989

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I88A3|MATRIX protein 2|Influenza A virus (strain A/Memphis/8/1988

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I83A8|MATRIX protein 2|Influenza A virus (strain A/Hong

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I54A2|MATRIX protein 2|Influenza A virus (strain A/Malaysia:Malaya/302/1954

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I51A0|MATRIX protein 2|Influenza A virus (strain A/USA:Albany/12/1951

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I50A0|MATRIX protein 2|Influenza A virus (strain A/Fort

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I43A0|MATRIX protein 2|Influenza A virus (strain A/USA:Iowa/1943

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I30A0|MATRIX protein 2|Influenza A virus (strain A/Swine/Iowa/15/1930

Query: 3  EEHRRKQQ 10
          EE+R+KQQ
Sbjct: 74 EEYRQKQQ 81


>sp|M2_I77AB|MATRIX protein 2|Influenza A virus (strain A/USSR/90/1977

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I77AA|MATRIX protein 2|Influenza A virus (strain A/Brazil/11/1978

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I76A6|MATRIX protein 2|Influenza A virus (strain A/Memphis/110/1976

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I73A5|MATRIX protein 2|Influenza A virus (strain A/Port

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I72A8|MATRIX protein 2|Influenza A virus (strain A/Udorn/1972

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I72A3|MATRIX protein 2|Influenza A virus (strain A/Memphis/102/1972

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I72A2|MATRIX protein 2|Influenza A virus (strain A/Udorn/307/1972

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I70A0|MATRIX protein 2|Influenza A virus (strain A/Qu/7/1970

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I68A6|MATRIX protein 2|Influenza A virus (strain A/Northern

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I68A4|MATRIX protein 2|Influenza A virus (strain A/Hong

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I68A0|MATRIX protein 2|Influenza A virus (strain A/Aichi/2/1968

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I57A1|MATRIX protein 2|Influenza A virus (strain A/Leningrad/134/1957

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I45A0|MATRIX protein 2|Influenza A virus (strain A/USA:Huston/AA/1945

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I33A0|MATRIX protein 2|Influenza A virus (strain A/Wilson-Smith/1933

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I18A0|MATRIX protein 2|Influenza A virus (strain A/Brevig

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I82A9|MATRIX protein 2|Influenza A virus (strain A/Philippines/2/1982

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I78A8|MATRIX protein 2|Influenza A virus (strain A/Memphis/18/1978

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I78A7|MATRIX protein 2|Influenza A virus (strain A/Memphis/2/1978

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I02A4|MATRIX protein 2|Influenza A virus (strain A/Silky

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|M2_I02A2|MATRIX protein 2|Influenza A virus (strain A/Chicken/Hong

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|M2_I57A3|MATRIX protein 2|Influenza A virus (strain A/Leningrad/134/47/1957

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|M2_I57A2|MATRIX protein 2|Influenza A virus (strain A/Leningrad/134/17/1957

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|UL144_HCMVO|MEMBRANE glycoprotein UL144|Human cytomegalovirus (strain Toledo) (HHV-5)

Query: 2   IEEHRRKQQ 10
           ++ H+++QQ
Sbjct: 108 VQHHKQRQQ 116


>sp|M2_I82A7|MATRIX protein 2|Influenza A virus (strain A/Swine/Hong

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|M2_I97A1|MATRIX protein 2|Influenza A virus (strain A/Hong

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|M2_I97A0|MATRIX protein 2|Influenza A virus (strain A/Chicken/Hong

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|M2_I000F|MATRIX protein 2|Influenza A virus (strain A/Chicken/Weybridge

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|M2_I02A1|MATRIX protein 2|Influenza A virus (strain A/Guinea

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 67 EEYRQEQQ 74


>sp|IR10_HCMVM|PROTEIN IRL10|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   QIEEHRRKQQ 10
           ++E+H  K+Q
Sbjct: 126 KLEQHAAKKQ 135


>sp|IR10_HCMVA|PROTEIN IRL10|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   QIEEHRRKQQ 10
           ++E+H  K+Q
Sbjct: 127 KLEQHAAKKQ 136


>sp|M2_I40A0|MATRIX protein 2|Influenza A virus (strain A/Hickox/1940

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|UL144_HCMVM|MEMBRANE glycoprotein UL144|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2   IEEHRRKQQ 10
           ++ H+++QQ
Sbjct: 108 VQHHKQRQQ 116


>sp|M2_I02A7|MATRIX protein 2|Influenza A virus (strain A/Teal/China/2978.1/2002

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 72 EEYRQEQQ 79


>sp|RDRP_I59A0|RNA-DIRECTED RNA polymerase catalytic subunit|Influenza A virus (strain

Query: 2   IEEHRRKQQ 10
           IEE RR++Q
Sbjct: 750 IEELRRQKQ 758


>sp|M2_I75A0|MATRIX protein 2|Influenza A virus (strain A/Beijing/39/1975

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRKEQQ 81


>sp|EBNA4_EBVB9|EPSTEIN-BARR nuclear antigen 4|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 3   EEHRRKQ 9
           EEHR+K+
Sbjct: 428 EEHRKKK 434


>sp|EBNA4_EBVG|EPSTEIN-BARR nuclear antigen 4|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 3   EEHRRKQ 9
           EEHR+K+
Sbjct: 428 EEHRKKK 434


>sp|M2_I77A4|MATRIX protein 2|Influenza A virus (strain A/Swine/Colorado/1/1977

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|RDRP_I78A8|RNA-DIRECTED RNA polymerase catalytic subunit|Influenza A virus (strain

Query: 2   IEEHRRKQQ 10
           IEE RR++Q
Sbjct: 750 IEELRRQKQ 758


>sp|RDRP_I78A7|RNA-DIRECTED RNA polymerase catalytic subunit|Influenza A virus (strain

Query: 2   IEEHRRKQQ 10
           IEE RR++Q
Sbjct: 750 IEELRRQKQ 758


>sp|M2_I78A3|MATRIX protein 2|Influenza A virus (strain A/Mallard/New

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|M2_I77A9|MATRIX protein 2|Influenza A virus (strain A/Equine/New

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81


>sp|M2_I57A0|MATRIX protein 2|Influenza A virus (strain A/Japan/305/1957

Query: 3  EEHRRKQQ 10
          EE+R +QQ
Sbjct: 74 EEYRNEQQ 81


>sp|M2_I85A3|MATRIX protein 2|Influenza A virus (strain A/Chicken/Victoria/1/1985

Query: 3  EEHRRKQQ 10
          EE+R++QQ
Sbjct: 74 EEYRQEQQ 81




48|Sequence|236|245|RRKQQTLEAE

>sp|PG117_VACCC|UNCOATING factor OPG117|Vaccinia virus (strain Copenhagen) (VACV)

Query: 2   RKQQTLEA 9
           RK++T+EA
Sbjct: 387 RKRKTVEA 394


>sp|PG117_MONPV|UNCOATING factor OPG117|Monkeypox virus (MPXV)

Query: 2   RKQQTLEA 9
           RK++T+EA
Sbjct: 387 RKRKTVEA 394


>sp|PG117_VARV|UNCOATING factor OPG117|Variola virus

Query: 2   RKQQTLEA 9
           RK++T+EA
Sbjct: 387 RKRKTVEA 394


>sp|PG117_VAR67|UNCOATING factor OPG117|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 2   RKQQTLEA 9
           RK++T+EA
Sbjct: 387 RKRKTVEA 394




49|Sequence|241|250|TLEAEEAKRR

>sp|ICP4_HHV11|MAJOR viral transcription factor ICP4|Human herpesvirus 1 (strain 17)

Query: 3   EAEEAKRR 10
           EAEEA+RR
Sbjct: 344 EAEEARRR 351


>sp|ATI_VAR67|A-TYPE inclusion protein A25 homolog|Variola virus (isolate

Query: 3   EAEEAKRR 10
           E EEAKR+
Sbjct: 427 ELEEAKRK 434




50|Sequence|246|255|EAKRRLKEQS

>sp|CAPSD_TTVV5|CAPSID protein|Torque teno virus (isolate Human/Japan/SANBAN/1999)

Query: 3   KRRLKEQ 9
           KRRL+EQ
Sbjct: 708 KRRLREQ 714


>sp|POLG_SVSAP|GENOME polyprotein|Sapporo virus (isolate

Query: 3   KRRLKEQS 10
           +RR KEQ+
Sbjct: 659 ERRFKEQA 666


>sp|POLG_SVM93|GENOME polyprotein|Sapporo virus (strain Human/United

Query: 3   KRRLKEQS 10
           +RR KEQ+
Sbjct: 659 ERRFKEQA 666


>sp|UXP_ADE02|U exon protein|Human adenovirus C serotype 2

Query: 2  AKRRLKEQS 10
          AKRRL+ QS
Sbjct: 26 AKRRLRYQS 34


>sp|ATI_VAR67|A-TYPE inclusion protein A25 homolog|Variola virus (isolate

Query: 1   EAKRRLKE 8
           EAKR+L E
Sbjct: 430 EAKRKLTE 437


>sp|LTP_HHV2H|LARGE tegument protein deneddylase|Human herpesvirus 2 (strain HG52)

Query: 1   EAKRRLKEQS 10
           EA+ RL+E++
Sbjct: 990 EARSRLRERA 999


>sp|VU3_HHV6U|PROTEIN U3|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   EAKRRLKE 8
           EA+RRL E
Sbjct: 244 EARRRLAE 251




51|Sequence|251|260|LKEQSIFGDH

>sp|POLG_HRV1B|GENOME polyprotein|Human rhinovirus 1B (HRV-1B)

Query: 1   LKEQSIFGDH 10
           LKE  IFG++
Sbjct: 155 LKEMGIFGEN 164


>sp|POLG_DEN3S|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    LKEQSIFG 8
            +K+Q IFG
Sbjct: 1498 IKQQGIFG 1505


>sp|POLG_DEN3P|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    LKEQSIFG 8
            +K+Q IFG
Sbjct: 1498 IKQQGIFG 1505


>sp|POLG_DEN3M|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    LKEQSIFG 8
            +K+Q IFG
Sbjct: 1498 IKQQGIFG 1505


>sp|POLG_DEN3I|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    LKEQSIFG 8
            +K+Q IFG
Sbjct: 1498 IKQQGIFG 1505


>sp|POLG_DEN3C|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    LKEQSIFG 8
            +K+Q IFG
Sbjct: 1498 IKQQGIFG 1505


>sp|POLG_HRV2|GENOME polyprotein|Human rhinovirus 2 (HRV-2)

Query: 1   LKEQSIFGDH 10
           LK+  IFG++
Sbjct: 155 LKDMGIFGEN 164


>sp|POLG_HRV16|GENOME polyprotein|Human rhinovirus 16 (HRV-16)

Query: 1   LKEQSIFGDH 10
           LK+  IFG++
Sbjct: 155 LKDMGIFGEN 164


>sp|POLG_HRV1A|GENOME polyprotein|Human rhinovirus 1A (HRV-1A)

Query: 1   LKEQSIFGDH 10
           LK+  IFG++
Sbjct: 155 LKDMGIFGEN 164


>sp|LTP_HHV8P|LARGE tegument protein deneddylase|Human herpesvirus 8 type P

Query: 4    QSIFGDH 10
            +S+F DH
Sbjct: 1327 KSVFNDH 1333


>sp|HEMA_INBVK|HEMAGGLUTININ B virus (strain B/Victoria/2/1987)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 359 LKERGFFG 366


>sp|HEMA_INBVI|HEMAGGLUTININ B virus (strain B/Victoria/3/1985)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 352 LKERGFFG 359


>sp|HEMA_INBUS|HEMAGGLUTININ B virus (strain B/USSR/100/1983)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 350 LKERGFFG 357


>sp|HEMA_INBSJ|HEMAGGLUTININ B virus (strain B/Singapore/1964)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 354 LKERGFFG 361


>sp|HEMA_INBSI|HEMAGGLUTININ B virus (strain B/Singapore/222/1979)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 357 LKERGFFG 364


>sp|HEMA_INBOR|HEMAGGLUTININ B virus (strain B/Oregon/5/1980)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 357 LKERGFFG 364


>sp|HEMA_INBME|HEMAGGLUTININ B virus (strain B/Memphis/6/1986)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 352 LKERGFFG 359


>sp|HEMA_INBMD|HEMAGGLUTININ B virus (strain B/Maryland/1959)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 348 LKERGFFG 355


>sp|HEMA_INBLE|HEMAGGLUTININ B virus (strain B/Lee/1940)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 358 LKERGFFG 365


>sp|HEMA_INB|HEMAGGLUTININ B virus (strain B/ID/1986)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 355 LKERGFFG 362


>sp|HEMA_INBHK|HEMAGGLUTININ B virus (strain B/Hong

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 349 LKERGFFG 356


>sp|HEMA_INBGL|HEMAGGLUTININ B virus (strain B/GL/1954)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 352 LKERGFFG 359


>sp|HEMA_INBEN|HEMAGGLUTININ B virus (strain B/England/222/1982)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 357 LKERGFFG 364


>sp|HEMA_INBBO|HEMAGGLUTININ B virus (strain B/Bonn/1943)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 349 LKERGFFG 356


>sp|HEMA_INBBE|HEMAGGLUTININ B virus (strain B/Beijing/1/1987)

Query: 1   LKEQSIFG 8
           LKE+  FG
Sbjct: 359 LKERGFFG 366


>sp|NEF_HV2ST|PROTEIN Nef|Human immunodeficiency virus type 2

Query: 2   KEQSIFGD 9
           KE+ I GD
Sbjct: 147 KEEGIIGD 154




52|Sequence|256|265|IFGDHRDEEE

>sp|GB_HHV6Z|ENVELOPE glycoprotein B|Human herpesvirus 6B (strain Z29)

Query: 1   IFGDHRDEE 9
           + GDHR EE
Sbjct: 539 LLGDHRTEE 547


>sp|GB_HHV6U|ENVELOPE glycoprotein B|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   IFGDHRDEE 9
           + GDHR EE
Sbjct: 539 LLGDHRTEE 547


>sp|GB_HHV6G|ENVELOPE glycoprotein B|Human herpesvirus 6A (strain GS)

Query: 1   IFGDHRDEE 9
           + GDHR EE
Sbjct: 539 LLGDHRTEE 547


>sp|HEMA_HUTV|HEMAGGLUTININ-ESTERASE torovirus (HuTV)

Query: 3   GDHRDEE 9
            DHRD+E
Sbjct: 326 ADHRDDE 332


>sp|UL32_HHV2H|PACKAGING protein UL32|Human herpesvirus 2 (strain HG52)

Query: 3   GDHRDE 8
            DHRDE
Sbjct: 522 ADHRDE 527


>sp|POLG_HE71M|GENOME polyprotein|Human enterovirus 71 (strain 7423/MS/87)

Query: 2   FGDHRDEEE 10
           FG+H+ E++
Sbjct: 776 FGEHKQEKD 784


>sp|POLG_HE71B|GENOME polyprotein|Human enterovirus 71 (strain USA/BrCr/1970)

Query: 2   FGDHRDEEE 10
           FG+H+ E++
Sbjct: 776 FGEHKQEKD 784


>sp|POLG_HE71|GENOME polyprotein|Human enterovirus 71 (EV71) (EV-71)

Query: 2   FGDHRDEEE 10
           FG+H+ E++
Sbjct: 776 FGEHKQEKD 784


>sp|ENV_FOAMV|ENVELOPE glycoprotein gp130|Human spumaretrovirus (SFVcpz(hu)) (Human foamy

Query: 2   FGDHRDEEE 10
            GD RD+E+
Sbjct: 214 LGDPRDQEQ 222


>sp|POLG_SVSAP|GENOME polyprotein|Sapporo virus (isolate

Query: 3    GDHRDEEE 10
            GD+ DEE+
Sbjct: 1333 GDYWDEEQ 1340


>sp|POLG_SVM93|GENOME polyprotein|Sapporo virus (strain Human/United

Query: 3    GDHRDEEE 10
            GD+ DEE+
Sbjct: 1333 GDYWDEEQ 1340


>sp|DNBI_HHV2H|MAJOR DNA-binding protein|Human herpesvirus 2 (strain HG52)

Query: 2    FGDHRDEEE 10
            FGD  DE++
Sbjct: 1144 FGDFGDEDD 1152


>sp|R1A_CVHN5|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N5)

Query: 1    IFGDHRDEE 9
            + GD+ DEE
Sbjct: 1031 VTGDNNDEE 1039


>sp|R1A_CVHN1|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N1)

Query: 1    IFGDHRDEE 9
            + GD+ DEE
Sbjct: 1081 VTGDNNDEE 1089


>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)

Query: 1    IFGDHRDEE 9
            + GD+ DEE
Sbjct: 1031 VTGDNNDEE 1039


>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)

Query: 1    IFGDHRDEE 9
            + GD+ DEE
Sbjct: 1081 VTGDNNDEE 1089


>sp|HELI_HHV8P|DNA replication helicase|Human herpesvirus 8 type P

Query: 2   FGDHRD 7
           FG+HR+
Sbjct: 728 FGNHRN 733


>sp|UL35_HCMVM|TEGUMENT protein UL35|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2   FGDHRDEEE 10
           FGD  +E+E
Sbjct: 357 FGDEDEEQE 365


>sp|UL35_HCMVA|PROTEIN UL35|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   FGDHRDEEE 10
           FGD  +E+E
Sbjct: 357 FGDEDEEQE 365


>sp|PHOSP_MEASF|PHOSPHOPROTEIN virus (strain Edmonston B)

Query: 3   GDHRDEE 9
           GDH D+E
Sbjct: 304 GDHYDDE 310


>sp|MIR1_HHV8P|E3 ubiquitin-protein ligase MIR1|Human herpesvirus 8 type P

Query: 3   GDHRDEE 9
           GD++DEE
Sbjct: 187 GDNQDEE 193


>sp|PHOSP_MEASY|PHOSPHOPROTEIN virus (strain Yamagata-1) (MeV)

Query: 3   GDHRDEE 9
           GDH D+E
Sbjct: 304 GDHYDDE 310


>sp|R1A_CVHN2|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N2)

Query: 1    IFGDHRDEE 9
            + GD+ DEE
Sbjct: 1051 VTGDNDDEE 1059


>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)

Query: 1    IFGDHRDEE 9
            + GD+ DEE
Sbjct: 1051 VTGDNDDEE 1059


>sp|ENV_SFV3L|ENVELOPE glycoprotein gp130|Simian foamy virus type 3

Query: 2   FGDHRDEEE 10
            GD RD+++
Sbjct: 214 LGDPRDQDQ 222


>sp|PORTL_VZVD|PORTAL protein|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 5   HRDEEE 10
           HR EEE
Sbjct: 616 HRSEEE 621


>sp|US22_HCMVM|TEGUMENT protein US22|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   GDHRDEEE 10
           GD  DE+E
Sbjct: 474 GDSSDEDE 481


>sp|US22_HCMVA|EARLY nuclear protein HWLF1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   GDHRDEEE 10
           GD  DE+E
Sbjct: 474 GDSSDEDE 481


>sp|TRM3_VZVD|TRIPARTITE terminase subunit 3|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 1   IFGDHRD 7
           + GDH D
Sbjct: 229 LLGDHAD 235




53|Sequence|261|270|RDEEEETHMK

>sp|POLG_USUV|GENOME polyprotein|Usutu virus (USUV)

Query: 2    DEEEETHMK 10
            DEE E H+K
Sbjct: 2967 DEERENHLK 2975


>sp|POLG_STEVM|GENOME polyprotein|St. louis encephalitis virus (strain

Query: 2    DEEEETHMK 10
            DEE E H+K
Sbjct: 2962 DEEREAHLK 2970


>sp|POLG_OHFV|GENOME polyprotein|Omsk hemorrhagic fever virus (OHFV)

Query: 2    DEEEETHMK 10
            DEE E H+K
Sbjct: 2948 DEERERHLK 2956


>sp|POLG_JAEVM|GENOME polyprotein|Japanese encephalitis virus (strain M28)

Query: 2    DEEEETHMK 10
            DEE E H++
Sbjct: 2965 DEERENHLR 2973


>sp|POLG_JAEVJ|GENOME polyprotein|Japanese encephalitis virus (strain Jaoars982)

Query: 2    DEEEETHMK 10
            DEE E H++
Sbjct: 2965 DEERENHLR 2973


>sp|POLG_JAEV5|GENOME polyprotein|Japanese encephalitis virus (strain SA(v))

Query: 2    DEEEETHMK 10
            DEE E H++
Sbjct: 2965 DEERENHLR 2973


>sp|POLG_WNV|GENOME polyprotein|West Nile virus (WNV)

Query: 2    DEEEETHMK 10
            DEE E H++
Sbjct: 2963 DEEREAHLR 2971


>sp|POLG_JAEV1|GENOME polyprotein|Japanese encephalitis virus (strain SA-14)

Query: 2    DEEEETHMK 10
            DEE E H++
Sbjct: 2965 DEERENHLR 2973


>sp|POLG_WNV9|GENOME polyprotein|West Nile virus (strain NY-99)

Query: 2    DEEEETHMK 10
            DEE E H++
Sbjct: 2966 DEEREAHLR 2974


>sp|POLG_KUNJM|GENOME polyprotein|Kunjin virus (strain MRM61C)

Query: 2    DEEEETHMK 10
            DEE E H++
Sbjct: 2966 DEEREAHLR 2974


>sp|POLG_MVEV5|GENOME polyprotein|Murray valley encephalitis virus (strain

Query: 2    DEEEETHMK 10
            DEE E H++
Sbjct: 2967 DEERECHLR 2975


>sp|POLG_ALKV|GENOME polyprotein|Alkhumra hemorrhagic fever virus (ALKV)

Query: 2    DEEEETHMK 10
            DEE E H++
Sbjct: 2950 DEERERHLR 2958


>sp|POLG_KFDV|GENOME polyprotein|Kyasanur forest disease virus (KFDV)

Query: 2    DEEEETHM 9
            DEE E H+
Sbjct: 2950 DEERERHL 2957


>sp|POLG_TBEVH|GENOME polyprotein|Tick-borne encephalitis virus (strain Hypr)

Query: 2    DEEEETHM 9
            DEE E H+
Sbjct: 2948 DEERERHL 2955


>sp|POLG_TBEVW|GENOME polyprotein|Tick-borne encephalitis virus European subtype

Query: 2    DEEEETHM 9
            DEE E H+
Sbjct: 2948 DEERERHL 2955


>sp|POLG_LIVK|GENOME polyprotein|Louping ill virus (isolate Grouses/Scotland/K/1980)

Query: 2    DEEEETHM 9
            DEE E H+
Sbjct: 2948 DEERERHL 2955


>sp|POLG_TBEVS|GENOME polyprotein|Tick-borne encephalitis virus Far Eastern

Query: 2    DEEEETHM 9
            DEE E H+
Sbjct: 2946 DEERERHL 2953


>sp|POLG_POWVL|GENOME polyprotein|Tick-borne powassan virus (strain LB)

Query: 2    DEEEETHMK 10
            DEE   H+K
Sbjct: 2949 DEERSRHLK 2957


>sp|CAPSD_TTVV3|CAPSID protein|Torque teno virus (isolate Human/Finland/Hel32/2002)

Query: 1   RDEEEE 6
           +DEEEE
Sbjct: 683 KDEEEE 688


>sp|ENV_FOAMV|ENVELOPE glycoprotein gp130|Human spumaretrovirus (SFVcpz(hu)) (Human foamy

Query: 1   RDEEEETHMK 10
           RD+E+  H K
Sbjct: 218 RDQEQYIHRK 227


>sp|ICP0_HHV2H|E3 ubiquitin-protein ligase ICP0|Human herpesvirus 2 (strain HG52)

Query: 2  DEEEETHM 9
          D EEET +
Sbjct: 46 DSEEETEV 53


>sp|POLG_ZIKVK|GENOME polyprotein|Zika virus (isolate ZIKV/Human/Cambodia/FSS13025/2010)

Query: 2    DEEEETHMK 10
            D+E E H++
Sbjct: 2957 DKEREHHLR 2965


>sp|POLG_ZIKVF|GENOME polyprotein|Zika virus (isolate ZIKV/Human/French

Query: 2    DEEEETHMK 10
            D+E E H++
Sbjct: 2957 DKEREHHLR 2965


>sp|UL36_HCMVA|UNCHARACTERIZED protein UL36|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   DEEEETHM 9
           DE+ ET+M
Sbjct: 421 DEDPETYM 428


>sp|VICA_HCMVM|VIRAL inhibitor of caspase-8-induced apoptosis|Human cytomegalovirus

Query: 2   DEEEETHM 9
           DE+ ET+M
Sbjct: 421 DEDPETYM 428




54|Sequence|266|275|ETHMKKSESE

>sp|PG189_VARV|ANKYRIN repeat protein OPG189|Variola virus

Query: 3   HMKKSESE 10
           H KKSESE
Sbjct: 180 HYKKSESE 187


>sp|PG189_VAR67|ANKYRIN repeat protein OPG189|Variola virus (isolate Human/India/Ind3/1967)

Query: 3   HMKKSESE 10
           H KKSESE
Sbjct: 180 HYKKSESE 187


>sp|PG189_VACCC|ANKYRIN repeat protein OPG189|Vaccinia virus (strain Copenhagen) (VACV)

Query: 3   HMKKSESE 10
           H KKSESE
Sbjct: 180 HYKKSESE 187


>sp|POLS_ONNVG|STRUCTURAL polyprotein|O'nyong-nyong virus (strain Gulu) (ONNV)

Query: 1   ETHMKKSES 9
           E H++KSES
Sbjct: 913 EAHVEKSES 921


>sp|POLS_CHIKS|STRUCTURAL polyprotein|Chikungunya virus (strain S27-African prototype)

Query: 1   ETHMKKSES 9
           E H++KSES
Sbjct: 914 EAHVEKSES 922


>sp|POLS_ONNVI|STRUCTURAL polyprotein|O'nyong-nyong virus (strain Igbo Ora)

Query: 1   ETHMKKSES 9
           E H++KSES
Sbjct: 913 EAHVEKSES 921


>sp|POLS_ONNVS|STRUCTURAL polyprotein|O'nyong-nyong virus (strain SG650) (ONNV)

Query: 1   ETHMKKSES 9
           E H++KSES
Sbjct: 913 EAHVEKSES 921


>sp|POLS_CHIK3|STRUCTURAL polyprotein|Chikungunya virus (strain 37997) (CHIKV)

Query: 1   ETHMKKSES 9
           E H++KSES
Sbjct: 914 EAHVEKSES 922


>sp|POLS_CHIKN|STRUCTURAL polyprotein|Chikungunya virus (strain Nagpur) (CHIKV)

Query: 1   ETHMKKSES 9
           E H++KSES
Sbjct: 914 EAHVEKSES 922


>sp|PG189_MONPV|ANKYRIN repeat protein OPG189|Monkeypox virus (MPXV)

Query: 5   KKSESE 10
           KKSESE
Sbjct: 185 KKSESE 190




55|Sequence|271|280|KSESEVEEAA

>sp|ENV_HV1JR|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 1   KSESEVE 7
           K+ESE+E
Sbjct: 452 KNESEIE 458


>sp|R1AB_SARS2|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 1    KSESEVEE 8
            KSE +VE+
Sbjct: 1194 KSEKQVEQ 1201


>sp|R1A_SARS2|REPLICASE polyprotein 1a|Severe acute respiratory syndrome coronavirus

Query: 1    KSESEVEE 8
            KSE +VE+
Sbjct: 1194 KSEKQVEQ 1201




56|Sequence|276|285|VEEAAAIIAQ

 ***** No hits found ******


57|Sequence|281|290|AIIAQRPDNP

>sp|GP_PTPV|ENVELOPMENT polyprotein|Punta toro phlebovirus

Query: 2   IIAQRPDNP 10
           IIA  PD+P
Sbjct: 268 IIAAPPDSP 276


>sp|L_EBOSM|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 4    AQRPDNP 10
             QRPD P
Sbjct: 1582 GQRPDPP 1588


>sp|V_MUMPS|NON-STRUCTURAL protein V|Mumps virus (strain SBL) (MuV)

Query: 4   AQRPDNP 10
             RPDNP
Sbjct: 160 CSRPDNP 166


>sp|V_MUMP1|NON-STRUCTURAL protein V|Mumps virus (strain SBL-1) (MuV)

Query: 4   AQRPDNP 10
             RPDNP
Sbjct: 160 CSRPDNP 166


>sp|V_MUMPM|NON-STRUCTURAL protein V|Mumps virus genotype B (strain

Query: 6   RPDNP 10
           RPDNP
Sbjct: 162 RPDNP 166


>sp|MATRX_HRSVB|MATRIX protein|Human respiratory syncytial virus B

Query: 1  AIIAQRPDN 9
          A++AQ P N
Sbjct: 79 AVLAQMPSN 87


>sp|V_MUMPZ|NON-STRUCTURAL protein V|Mumps virus genotype N (strain

Query: 6   RPDNP 10
           RPDNP
Sbjct: 162 RPDNP 166


>sp|V_MUMPE|NON-STRUCTURAL protein V|Mumps virus (strain Enders) (MuV)

Query: 6   RPDNP 10
           RPDNP
Sbjct: 162 RPDNP 166


>sp|V_MUMPJ|NON-STRUCTURAL protein V|Mumps virus genotype A (strain

Query: 6   RPDNP 10
           RPDNP
Sbjct: 162 RPDNP 166




58|Sequence|286|295|RPDNPREFFK

>sp|L_ABLVH|LARGE structural protein|Australian bat lyssavirus (isolate

Query: 2   PDNPREFFK 10
           P NPREF K
Sbjct: 516 PVNPREFLK 524


>sp|L_RABVD|LARGE structural protein|Rabies virus (strain China/DRV) (RABV)

Query: 2   PDNPREFFK 10
           P NPREF K
Sbjct: 516 PINPREFLK 524


>sp|L_ABLVB|LARGE structural protein|Australian bat lyssavirus (isolate Bat/AUS/1996)

Query: 2   PDNPREFFK 10
           P NPREF K
Sbjct: 517 PVNPREFLK 525


>sp|L_RABVN|LARGE structural protein|Rabies virus (strain Nishigahara RCEH)

Query: 2   PDNPREFFK 10
           P NPREF K
Sbjct: 516 PINPREFLK 524


>sp|L_RABVP|LARGE structural protein|Rabies virus (strain Pasteur vaccins

Query: 2   PDNPREFFK 10
           P NPREF K
Sbjct: 516 PVNPREFLK 524


>sp|L_RABVH|LARGE structural protein|Rabies virus (strain HEP-Flury) (RABV)

Query: 2   PDNPREFFK 10
           P NPREF K
Sbjct: 516 PVNPREFLK 524


>sp|L_RABVR|LARGE structural protein|Rabies virus (strain China/MRV) (RABV)

Query: 2   PDNPREFFK 10
           P NPREF K
Sbjct: 516 PVNPREFLK 524


>sp|L_RABVB|LARGE structural protein|Rabies virus (strain silver-haired

Query: 2   PDNPREFFK 10
           P NPREF K
Sbjct: 517 PVNPREFLK 525


>sp|L_RABVI|LARGE structural protein|Rabies virus (strain India) (RABV)

Query: 2   PDNPREFFK 10
           P NPREF K
Sbjct: 516 PVNPREFLK 524


>sp|L_RABVA|LARGE structural protein|Rabies virus (strain PM1503/AVO1) (RABV)

Query: 2   PDNPREFFK 10
           P NPREF K
Sbjct: 516 PVNPREFLK 524


>sp|L_RABVS|LARGE structural protein|Rabies virus (strain SAD B19)

Query: 2   PDNPREFFK 10
           P NPREF +
Sbjct: 516 PVNPREFLR 524


>sp|L_RABVE|LARGE structural protein|Rabies virus (strain ERA) (RABV)

Query: 2   PDNPREFFK 10
           P NPREF +
Sbjct: 516 PVNPREFLR 524


>sp|V_MUMPM|NON-STRUCTURAL protein V|Mumps virus genotype B (strain

Query: 1   RPDNPR 6
           RPDNPR
Sbjct: 162 RPDNPR 167


>sp|TEG5_HHV1F|TEGUMENT protein UL47|Human herpesvirus 1 (strain F)

Query: 2   PDNPREFFK 10
           PDNP  FF+
Sbjct: 242 PDNPAVFFR 250


>sp|TEG5_HHV11|TEGUMENT protein UL47|Human herpesvirus 1 (strain 17)

Query: 2   PDNPREFFK 10
           PDNP  FF+
Sbjct: 242 PDNPAVFFR 250


>sp|V_MUMPE|NON-STRUCTURAL protein V|Mumps virus (strain Enders) (MuV)

Query: 1   RPDNPR 6
           RPDNPR
Sbjct: 162 RPDNPR 167


>sp|V_MUMPZ|NON-STRUCTURAL protein V|Mumps virus genotype N (strain

Query: 1   RPDNPR 6
           RPDNPR
Sbjct: 162 RPDNPR 167


>sp|V_MUMPJ|NON-STRUCTURAL protein V|Mumps virus genotype A (strain

Query: 1   RPDNPR 6
           RPDNPR
Sbjct: 162 RPDNPR 167


>sp|V_MUMPS|NON-STRUCTURAL protein V|Mumps virus (strain SBL) (MuV)

Query: 1   RPDNPR 6
           RPDNPR
Sbjct: 162 RPDNPR 167


>sp|L_EBOSM|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 1    RPDNPREFF 9
            RPD P EF 
Sbjct: 1584 RPDPPGEFL 1592


>sp|V_MUMP1|NON-STRUCTURAL protein V|Mumps virus (strain SBL-1) (MuV)

Query: 1   RPDNPR 6
           RPDNPR
Sbjct: 162 RPDNPR 167


>sp|ENV_HV1V9|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   PDNPRE 7
           PD PRE
Sbjct: 730 PDRPRE 735


>sp|POLG_SVM10|GENOME polyprotein|Sapporo virus (isolate

Query: 2   PDNPR 6
           PDNPR
Sbjct: 577 PDNPR 581


>sp|POLG_SVSAP|GENOME polyprotein|Sapporo virus (isolate

Query: 2   PDNPR 6
           PDNPR
Sbjct: 576 PDNPR 580


>sp|L_TULV|RNA-DIRECTED RNA polymerase L|Tula orthohantavirus (TULV) (Tula virus)

Query: 4   NPREFFK 10
           NPR +FK
Sbjct: 354 NPRAYFK 360


>sp|POLG_SVM93|GENOME polyprotein|Sapporo virus (strain Human/United

Query: 2   PDNPR 6
           PDNPR
Sbjct: 576 PDNPR 580


>sp|L_PUUMG|RNA-DIRECTED RNA polymerase L|Puumala virus (strain Bank

Query: 4   NPREFFK 10
           NPR +FK
Sbjct: 354 NPRVYFK 360


>sp|L_PUUMS|RNA-DIRECTED RNA polymerase L|Puumala virus (strain Sotkamo/V-2969/81)

Query: 4   NPREFFK 10
           NPR +FK
Sbjct: 354 NPRVYFK 360


>sp|ORF50_HHV8P|REPLICATION and transcription activator|Human herpesvirus 8 type P

Query: 2   PDNPREFF 9
           PDNP  F 
Sbjct: 407 PDNPSSFL 414


>sp|E3_YLDV|PROTEIN E3 homolog|Yaba-like disease virus (YLDV)

Query: 2  PDNPREFFK 10
          P NP ++FK
Sbjct: 63 PSNPPKWFK 71


>sp|VIE1_HCMVA|IMMEDIATE early protein IE1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2  PDNPRE 7
          PDNP E
Sbjct: 11 PDNPDE 16


>sp|MATRX_PIV5|MATRIX protein|Parainfluenza virus 5 (strain W3)

Query: 2  PDNPREFFK 10
          P NPR+  K
Sbjct: 10 PTNPRQSIK 18


>sp|VP4_ROTHY|OUTER capsid protein VP4|Rotavirus A (isolate

Query: 2   PDNPREFFK 10
           P+N RE+++
Sbjct: 455 PNNGREYYE 463


>sp|VIE1_HCMVT|IMMEDIATE early protein IE1|Human cytomegalovirus (strain Towne) (HHV-5)

Query: 2  PDNPRE 7
          PDNP E
Sbjct: 11 PDNPDE 16


>sp|VIE1_HCMVM|IMMEDIATE early protein IE1|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2  PDNPRE 7
          PDNP E
Sbjct: 11 PDNPDE 16


>sp|GAG_SFV1|GAG polyprotein|Simian foamy virus type 1

Query: 2   PDNPRE 7
           P NPRE
Sbjct: 308 PSNPRE 313


>sp|MCP_HHV6U|MAJOR capsid protein|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   RPDNP 5
           +PDNP
Sbjct: 523 KPDNP 527


>sp|MCP_HHV6Z|MAJOR capsid protein|Human herpesvirus 6B (strain Z29)

Query: 1   RPDNP 5
           +PDNP
Sbjct: 523 KPDNP 527


>sp|VU4_HHV7J|PROTEIN U4|Human herpesvirus 7 (strain JI)

Query: 3   DNPREFFK 10
           DNP  FF+
Sbjct: 452 DNPVRFFR 459


>sp|CEP3_HCMVM|CYTOPLASMIC envelopment protein 3|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   RPDNPR 6
           RPD PR
Sbjct: 160 RPDTPR 165


>sp|CEP3_HCMVA|CYTOPLASMIC envelopment protein 3|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   RPDNPR 6
           RPD PR
Sbjct: 160 RPDTPR 165


>sp|GLYCO_RABVC|GLYCOPROTEIN virus (strain CVS-11) (RABV)

Query: 2   PDNPR 6
           P+NPR
Sbjct: 199 PENPR 203


>sp|GLYCO_RABVR|GLYCOPROTEIN virus (strain China/MRV) (RABV)

Query: 2   PDNPR 6
           P+NPR
Sbjct: 199 PENPR 203


>sp|POLG_HE701|GENOME polyprotein|Human enterovirus 70 (strain J670/71)

Query: 4   NPREFFK 10
           NP  FFK
Sbjct: 734 NPSVFFK 740


>sp|POLG_HRV14|GENOME polyprotein|Human rhinovirus 14 (HRV-14)

Query: 4   NPREFFK 10
           NP  FFK
Sbjct: 740 NPSVFFK 746


>sp|POLG_HRV3|GENOME polyprotein|Human rhinovirus 3 (HRV-3)

Query: 4   NPREFFK 10
           NP  FFK
Sbjct: 740 NPSVFFK 746




59|Sequence|291|300|REFFKQQERV

>sp|VE1_HPV24|REPLICATION protein E1|Human papillomavirus 24

Query: 1  REFFKQQE 8
          RE F+QQE
Sbjct: 57 RELFQQQE 64


>sp|POLN_BFV|POLYPROTEIN P1234|Barmah forest virus (BFV)

Query: 1   REFFKQQERV 10
           ++F KQ +RV
Sbjct: 228 KKFLKQSDRV 237


>sp|VE1_HPV20|REPLICATION protein E1|Human papillomavirus 20

Query: 1  REFFKQQE 8
          RE F QQE
Sbjct: 57 RELFHQQE 64


>sp|VE1_HPV14|REPLICATION protein E1|Human papillomavirus 14

Query: 1  REFFKQQE 8
          RE F QQE
Sbjct: 58 RELFHQQE 65


>sp|VE1_HPV47|REPLICATION protein E1|Human papillomavirus 47

Query: 1  REFFKQQE 8
          RE F QQE
Sbjct: 57 RELFHQQE 64


>sp|VE1_HPV21|REPLICATION protein E1|Human papillomavirus 21

Query: 1  REFFKQQE 8
          RE F QQE
Sbjct: 57 RELFHQQE 64


>sp|VE1_HPV19|REPLICATION protein E1|Human papillomavirus 19

Query: 1  REFFKQQE 8
          RE F QQE
Sbjct: 57 RELFHQQE 64


>sp|UL133_HCMVM|PROTEIN UL133|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1  REFFK 5
          REFFK
Sbjct: 68 REFFK 72


>sp|GB_HHV2H|ENVELOPE glycoprotein B|Human herpesvirus 2 (strain HG52)

Query: 1   REFFKQQER 9
           RE+ ++Q+R
Sbjct: 461 REYMREQDR 469


>sp|GB_HHV23|ENVELOPE glycoprotein B|Human herpesvirus 2 (strain 333)

Query: 1   REFFKQQER 9
           RE+ ++Q+R
Sbjct: 461 REYMREQDR 469


>sp|L_BUNYW|RNA-DIRECTED RNA polymerase L|Bunyamwera virus (BUNV)

Query: 2   EFFKQQER 9
           + FK QER
Sbjct: 404 DLFKNQER 411




60|Sequence|296|305|QQERVASASA

>sp|A18_YMTV5|TRANSCRIPT termination protein A18|Yaba monkey tumor virus (strain

Query: 2  QERVAS 7
          QERVAS
Sbjct: 84 QERVAS 89




61|Sequence|301|310|ASASAGSCDV

 ***** No hits found ******


62|Sequence|306|315|GSCDVPSPFN

>sp|DPOL_VZVO|DNA polymerase catalytic subunit|Varicella-zoster virus (strain Oka

Query: 1   GSCDVPSPF 9
           GSCD+P  +
Sbjct: 396 GSCDLPQRY 404


>sp|DPOL_VZVD|DNA polymerase catalytic subunit|Varicella-zoster virus (strain Dumas)

Query: 1   GSCDVPSPF 9
           GSCD+P  +
Sbjct: 396 GSCDLPQRY 404


>sp|DPOL_HHV1K|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain KOS)

Query: 1   GSCDVP 6
           GSCD+P
Sbjct: 415 GSCDLP 420


>sp|DPOL_HHV1A|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain Angelotti)

Query: 1   GSCDVP 6
           GSCD+P
Sbjct: 415 GSCDLP 420


>sp|DPOL_HHV1S|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain SC16)

Query: 1   GSCDVP 6
           GSCD+P
Sbjct: 415 GSCDLP 420


>sp|DPOL_HHV11|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain 17)

Query: 1   GSCDVP 6
           GSCD+P
Sbjct: 415 GSCDLP 420


>sp|DPOL_HHV2H|DNA polymerase catalytic subunit|Human herpesvirus 2 (strain HG52)

Query: 1   GSCDVP 6
           GSCD+P
Sbjct: 416 GSCDLP 421


>sp|DPOL_HHV21|DNA polymerase catalytic subunit|Human herpesvirus 2 (strain 186)

Query: 1   GSCDVP 6
           GSCD+P
Sbjct: 416 GSCDLP 421


>sp|PG039_MONPV|INTERFERON antagonist OPG039|Monkeypox virus (MPXV)

Query: 4   DVPSPFN 10
           ++PSPF+
Sbjct: 150 EIPSPFD 156


>sp|CAPSD_CTFVL|INNER capsid protein VP2|Colorado tick fever virus (strain

Query: 3   CDVPSPF 9
           CD+ +PF
Sbjct: 521 CDIMAPF 527


>sp|DPOL_ADE12|DNA polymerase|Human adenovirus A serotype 12

Query: 4   DVPSPF 9
           DVP PF
Sbjct: 300 DVPGPF 305


>sp|DPOL_ADE40|DNA polymerase|Human adenovirus F serotype 40

Query: 4   DVPSPF 9
           DVP PF
Sbjct: 427 DVPGPF 432


>sp|DNBI_VZVO|MAJOR DNA-binding protein|Varicella-zoster virus (strain Oka vaccine)

Query: 5   VPSPFN 10
           VP PFN
Sbjct: 207 VPDPFN 212


>sp|DNBI_VZVD|MAJOR DNA-binding protein|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 5   VPSPFN 10
           VP PFN
Sbjct: 207 VPDPFN 212


>sp|POLG_HCVH9|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 3    CDVPSP 8
            C VPSP
Sbjct: 2114 CQVPSP 2119


>sp|POLN_BFV|POLYPROTEIN P1234|Barmah forest virus (BFV)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 1987 VPSPF 1991


>sp|POLG_HCVJ1|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 3    CDVPSP 8
            C VPSP
Sbjct: 2114 CQVPSP 2119


>sp|POLG_HCVIN|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 3    CDVPSP 8
            C VPSP
Sbjct: 2114 CQVPSP 2119


>sp|POLN_MAYAB|POLYPROTEIN P1234|Mayaro virus (strain Brazil) (MAYV)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 2013 VPSPF 2017


>sp|POLG_HCV1|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 3    CDVPSP 8
            C VPSP
Sbjct: 2114 CQVPSP 2119


>sp|POLN_RRVN|POLYPROTEIN P1234|Ross river virus (strain NB5092)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 2056 VPSPF 2060


>sp|POLG_HCVSA|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 3    CDVPSP 8
            C VPSP
Sbjct: 2115 CQVPSP 2120


>sp|POLN_ONNVI|POLYPROTEIN P1234|O'nyong-nyong virus (strain Igbo Ora)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 2089 VPSPF 2093


>sp|POLN_SAGV|POLYPROTEIN P1234|Sagiyama virus (SAGV)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 2043 VPSPF 2047


>sp|POLN_ONNVS|POLYPROTEIN P1234|O'nyong-nyong virus (strain SG650) (ONNV)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 2089 VPSPF 2093


>sp|POLN_ONNVG|POLYPROTEIN P1234|O'nyong-nyong virus (strain Gulu) (ONNV)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 2090 VPSPF 2094


>sp|POLN_GETV|POLYPROTEIN P1234|Getah virus (GETV)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 2043 VPSPF 2047


>sp|POLG_HCVEV|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 3    CDVPSP 8
            C VPSP
Sbjct: 2115 CQVPSP 2120


>sp|POLN_SFV|POLYPROTEIN P1234|Semliki forest virus (SFV)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 2005 VPSPF 2009


>sp|ORF3_TTVG1|UNCHARACTERIZED ORF3 protein|Torque teno midi virus 1

Query: 3  CDVPSPF 9
          CD  +PF
Sbjct: 36 CDCDTPF 42


>sp|POLN_CHIKS|POLYPROTEIN P1234|Chikungunya virus (strain S27-African prototype)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 2050 VPSPF 2054


>sp|POLN_CHIK3|POLYPROTEIN P1234|Chikungunya virus (strain 37997) (CHIKV)

Query: 5    VPSPF 9
            VPSPF
Sbjct: 2050 VPSPF 2054


>sp|POLN_RRVT|POLYPROTEIN nsP1234|Ross river virus (strain T48)

Query: 5   VPSPF 9
           VPSPF
Sbjct: 725 VPSPF 729


>sp|POLG_HCV77|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 3    CDVPSP 8
            C +PSP
Sbjct: 2114 CQIPSP 2119


>sp|GO_HHV7J|GLYCOPROTEIN U47 homolog|Human herpesvirus 7 (strain JI)

Query: 2  SCDVP 6
          SCD+P
Sbjct: 65 SCDIP 69


>sp|SCAF_HHV6U|CAPSID scaffolding protein|Human herpesvirus 6A (strain Uganda-1102)

Query: 1  GSCDVPSPFN 10
          GS ++P P N
Sbjct: 34 GSGNIPLPLN 43


>sp|RIR1_HCMVM|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit-like protein|Human cytomegalovirus (strain

Query: 1   GSCDVP 6
           G CD+P
Sbjct: 589 GECDMP 594


>sp|RIR1_HCMVA|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit-like protein|Human cytomegalovirus (strain

Query: 1   GSCDVP 6
           G CD+P
Sbjct: 589 GECDMP 594


>sp|SHUT_ADE40|SHUTOFF protein|Human adenovirus F serotype 40

Query: 2   SCDVPSPF 9
           SC +PS F
Sbjct: 482 SCALPSDF 489


>sp|SHUT_ADE41|SHUTOFF protein|Human adenovirus F serotype 41

Query: 2   SCDVPSPF 9
           SC +PS F
Sbjct: 484 SCALPSDF 491


>sp|POLG_HCVJP|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2118 CQVPAP 2123


>sp|POLG_HCVJ8|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2118 CQVPAP 2123


>sp|SPIKE_CVHN1|SPIKE glycoprotein|Human coronavirus HKU1 (isolate N1)

Query: 4   DVPSPFN 10
           +VPSP N
Sbjct: 337 NVPSPLN 343


>sp|POLG_HCVJT|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2114 CQVPAP 2119


>sp|POL_XMRV6|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP62)

Query: 5   VPSPFN 10
           VP+P+N
Sbjct: 786 VPNPYN 791


>sp|POL_XMRV4|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP42)

Query: 5   VPSPFN 10
           VP+P+N
Sbjct: 786 VPNPYN 791


>sp|POL_XMRV3|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP35)

Query: 5   VPSPFN 10
           VP+P+N
Sbjct: 786 VPNPYN 791


>sp|NRAM_I02A1|NEURAMINIDASE A virus (strain A/Guinea

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 145 EAPSPYN 151


>sp|POLG_HCVCO|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2114 CQVPAP 2119


>sp|CAPSD_TTVV3|CAPSID protein|Torque teno virus (isolate Human/Finland/Hel32/2002)

Query: 2   SCDVPSPF 9
           +CD+  PF
Sbjct: 246 ACDLQYPF 253


>sp|POLG_HCVTW|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2114 CQVPAP 2119


>sp|POLG_HCVR6|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2114 CQVPAP 2119


>sp|POLG_HCVJL|GENOME polyprotein|Hepatitis C virus genotype 6g

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2118 CQVPAP 2123


>sp|POLG_HCV6A|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2119 CQVPAP 2124


>sp|NRAM_I76AI|NEURAMINIDASE A virus (strain A/Swine/New

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I76A7|NEURAMINIDASE A virus (strain A/New

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I35A3|NEURAMINIDASE A virus (strain A/USA:Phila/1935

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|POLG_HCVBK|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2114 CQVPAP 2119


>sp|NRAM_I96A3|NEURAMINIDASE A virus (strain A/China:Nanchang/11/1996

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I34A1|NEURAMINIDASE A virus (strain A/Puerto

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 150 EAPSPYN 156


>sp|NRAM_I06A0|NEURAMINIDASE A virus (strain A/Russia:St.Petersburg/8/2006

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I00A1|NEURAMINIDASE A virus (strain A/New

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|POLG_HCVVN|GENOME polyprotein|Hepatitis C virus genotype 6d

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2112 CQVPAP 2117


>sp|POLG_HCVJ4|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2114 CQVPAP 2119


>sp|POLG_HCVED|GENOME polyprotein|Hepatitis C virus genotype 4a

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2114 CQVPAP 2119


>sp|NRAM_I80AA|NEURAMINIDASE A virus (strain A/India/6263/1980

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I79A4|NEURAMINIDASE A virus (strain A/Kiev/59/1979

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I67A2|NEURAMINIDASE A virus (strain A/Swine/Wisconsin/1/1967

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I61A1|NEURAMINIDASE A virus (strain A/Swine/Wisconsin/1/1961

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I04A1|NEURAMINIDASE A virus (strain A/Vietnam/1203/2004

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 145 EAPSPYN 151


>sp|NRAM_I96A2|NEURAMINIDASE A virus (strain A/USA:Memphis/10/1996

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I83A1|NEURAMINIDASE A virus (strain A/Chile/1/1983

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I36A0|NEURAMINIDASE A virus (strain A/Henry/1936

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I03A1|NEURAMINIDASE A virus (strain A/Chicken/Shantou/4231/2003

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 145 EAPSPYN 151


>sp|NRAM_I03A0|NEURAMINIDASE A virus (strain A/Hong

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I02A7|NEURAMINIDASE A virus (strain A/Teal/China/2978.1/2002

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 150 EAPSPYN 156


>sp|NRAM_I02A3|NEURAMINIDASE A virus (strain A/Chicken/Hong

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 145 EAPSPYN 151


>sp|NRAM_I77AB|NEURAMINIDASE A virus (strain A/USSR/90/1977

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I77AA|NEURAMINIDASE A virus (strain A/Brazil/11/1978

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I51A0|NEURAMINIDASE A virus (strain A/USA:Albany/12/1951

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I40A0|NEURAMINIDASE A virus (strain A/Hickox/1940

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I33A0|NEURAMINIDASE A virus (strain A/Wilson-Smith/1933

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 149 EAPSPYN 155


>sp|NRAM_I07A0|NEURAMINIDASE A virus (strain A/USA:Texas/UR06-0195/2007

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I01A2|NEURAMINIDASE A virus (strain A/Chicken/Hong

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I01A1|NEURAMINIDASE A virus (strain A/Chicken/Hong

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I00A0|NEURAMINIDASE A virus (strain A/Duck/Hong

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I96A0|NEURAMINIDASE A virus (strain A/Goose/Guangdong/1/1996

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I43A0|NEURAMINIDASE A virus (strain A/USA:Iowa/1943

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I02A4|NEURAMINIDASE A virus (strain A/Silky

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 145 EAPSPYN 151


>sp|NRAM_I02A2|NEURAMINIDASE A virus (strain A/Chicken/Hong

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 145 EAPSPYN 151


>sp|NRAM_I01A3|NEURAMINIDASE A virus (strain A/Chicken/Hong

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I01A0|NEURAMINIDASE A virus (strain A/Silky

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 145 EAPSPYN 151


>sp|POLG_HCVTR|GENOME polyprotein|Hepatitis C virus genotype 3b

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2122 CQVPAP 2127


>sp|POLG_HCVJA|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2114 CQVPAP 2119


>sp|NRAM_I97A1|NEURAMINIDASE A virus (strain A/Hong

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 146 EAPSPYN 152


>sp|NRAM_I45A0|NEURAMINIDASE A virus (strain A/USA:Huston/AA/1945

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I05A1|NEURAMINIDASE A virus (strain A/Goose/Guangxi/345/2005

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 137 EAPSPYN 143


>sp|NRAM_I02A6|NEURAMINIDASE A virus (strain A/Chicken/Hong

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 145 EAPSPYN 151


>sp|NRAM_I02A5|NEURAMINIDASE A virus (strain A/Chicken/Hong

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 145 EAPSPYN 151


>sp|POLG_HCVVP|GENOME polyprotein|Hepatitis C virus genotype 6h

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2115 CQVPAP 2120


>sp|NRAM_I18A0|NEURAMINIDASE A virus (strain A/Brevig

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I54A2|NEURAMINIDASE A virus (strain A/Malaysia:Malaya/302/1954

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|NRAM_I47A0|NEURAMINIDASE A virus (strain A/Fort

Query: 4   DVPSPFN 10
           + PSP+N
Sbjct: 165 EAPSPYN 171


>sp|POLG_HCVVO|GENOME polyprotein|Hepatitis C virus genotype 6k

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2116 CQVPAP 2121


>sp|POLG_HCVEU|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 3    CDVPSP 8
            C VP+P
Sbjct: 2118 CQVPAP 2123




63|Sequence|311|320|PSPFNHRPGS

>sp|POLG_DEN3P|GENOME polyprotein|Dengue virus type 3 (strain

Query: 2    SPFNHRPG 9
            S  NHRPG
Sbjct: 1025 SQHNHRPG 1032


>sp|POLG_DEN3C|GENOME polyprotein|Dengue virus type 3 (strain

Query: 2    SPFNHRPG 9
            S  NHRPG
Sbjct: 1025 SQHNHRPG 1032


>sp|POLG_DEN3I|GENOME polyprotein|Dengue virus type 3 (strain

Query: 2    SPFNHRPG 9
            S  NHRPG
Sbjct: 1025 SQHNHRPG 1032


>sp|POLG_DEN3M|GENOME polyprotein|Dengue virus type 3 (strain

Query: 2    SPFNHRPG 9
            S  NHRPG
Sbjct: 1025 SQHNHRPG 1032


>sp|L_PI2HT|RNA-DIRECTED RNA polymerase L|Human parainfluenza 2 virus (strain

Query: 1   PSPFNHR 7
           P+PFN R
Sbjct: 508 PNPFNRR 514


>sp|L_PIV5W|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain 21004-WR)

Query: 1   PSPFNHR 7
           P+PFN R
Sbjct: 507 PNPFNRR 513


>sp|L_PIV5|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain W3)

Query: 1   PSPFNHR 7
           P+PFN R
Sbjct: 507 PNPFNRR 513


>sp|L_MUMPJ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype A (strain

Query: 1   PSPFNHR 7
           P PFN R
Sbjct: 509 PQPFNRR 515


>sp|L_MUMPM|RNA-DIRECTED RNA polymerase L|Mumps virus genotype B (strain

Query: 1   PSPFNHR 7
           P PFN R
Sbjct: 509 PQPFNRR 515


>sp|L_MUMPZ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype N (strain

Query: 1   PSPFNHR 7
           P PFN R
Sbjct: 509 PQPFNRR 515


>sp|GAG_HV1YF|GAG polyprotein|Human immunodeficiency virus type 1

Query: 2   SPFNHRPGS 10
           SPF  RPG+
Sbjct: 444 SPFKGRPGN 452


>sp|POL_HTL3P|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 3

Query: 1   PSPFNHRPGS 10
           P P NH PG+
Sbjct: 682 PQPNNHGPGT 691


>sp|GAG_HV1YB|GAG polyprotein|Human immunodeficiency virus type 1

Query: 2   SPFNHRPGS 10
           SPF  RPG+
Sbjct: 443 SPFKGRPGN 451


>sp|RDRP_I02A4|RNA-DIRECTED RNA polymerase catalytic subunit|Influenza A virus (strain

Query: 1  PSPFNHRP 8
          P P NH P
Sbjct: 72 PLPENHEP 79


>sp|RDRP_I02A3|RNA-DIRECTED RNA polymerase catalytic subunit|Influenza A virus (strain

Query: 1  PSPFNHRP 8
          P P NH P
Sbjct: 72 PLPENHEP 79


>sp|RDRP_I02A2|RNA-DIRECTED RNA polymerase catalytic subunit|Influenza A virus (strain

Query: 1  PSPFNHRP 8
          P P NH P
Sbjct: 72 PLPENHEP 79


>sp|POLG_KFDV|GENOME polyprotein|Kyasanur forest disease virus (KFDV)

Query: 2    SPFNHRPG 9
            S +NH PG
Sbjct: 1031 SHYNHIPG 1038


>sp|RDRP_I02A1|RNA-DIRECTED RNA polymerase catalytic subunit|Influenza A virus (strain

Query: 1  PSPFNHRP 8
          P P NH P
Sbjct: 72 PLPENHEP 79


>sp|POLN_HEVHY|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 5   NHRPG 9
           NHRPG
Sbjct: 905 NHRPG 909


>sp|POLN_HEVBU|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 5   NHRPG 9
           NHRPG
Sbjct: 905 NHRPG 909


Query: 2   SPFNHRPG 9
           S  +HRPG
Sbjct: 807 SNVDHRPG 814


>sp|POLN_HEVMG|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 3

Query: 5   NHRPG 9
           NHRPG
Sbjct: 920 NHRPG 924


>sp|POLG_ALKV|GENOME polyprotein|Alkhumra hemorrhagic fever virus (ALKV)

Query: 2    SPFNHRPG 9
            S +NH PG
Sbjct: 1031 SHYNHIPG 1038


>sp|POLN_HEVUS|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 3

Query: 5   NHRPG 9
           NHRPG
Sbjct: 920 NHRPG 924


>sp|LT_POVWU|LARGE T antigen|WU polyomavirus (WUPyV)

Query: 2   SPFNHR 7
           +PF HR
Sbjct: 216 TPFRHR 221


>sp|PG148_VARV|DNA polymerase processivity factor component|Variola virus

Query: 3  PFNHRPG 9
          PFN  PG
Sbjct: 68 PFNIDPG 74


>sp|PG148_VAR67|DNA polymerase processivity factor component|Variola virus (isolate

Query: 3  PFNHRPG 9
          PFN  PG
Sbjct: 68 PFNIDPG 74


>sp|PG148_VACCC|DNA polymerase processivity factor component|Vaccinia virus (strain

Query: 3  PFNHRPG 9
          PFN  PG
Sbjct: 68 PFNIDPG 74


>sp|PG148_MONPV|DNA polymerase processivity factor component|Monkeypox virus (MPXV)

Query: 3  PFNHRPG 9
          PFN  PG
Sbjct: 68 PFNIDPG 74


>sp|A20_VACCA|DNA polymerase processivity factor component|Vaccinia virus (strain

Query: 3  PFNHRPG 9
          PFN  PG
Sbjct: 68 PFNIDPG 74


>sp|POLS_BFV|STRUCTURAL polyprotein|Barmah forest virus (BFV)

Query: 2   SPFNHRP 8
           +PF+H+P
Sbjct: 445 TPFSHKP 451


>sp|POLG_AIVA8|GENOME polyprotein|Aichi virus (strain Human/A846/88/1989) (AiV)

Query: 4   FNHRPG 9
           F HRPG
Sbjct: 587 FAHRPG 592


>sp|POLG_DEN1S|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1026 SQHNYRPG 1033


>sp|POLG_DEN27|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1027 SKHNYRPG 1034


>sp|POLG_DEN1B|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1027 SQHNYRPG 1034


>sp|POLN_HEVCT|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 4

Query: 5   NHRPG 9
           NHRPG
Sbjct: 919 NHRPG 923


>sp|POLG_DEN1W|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1027 SQHNYRPG 1034


>sp|POLN_HEVMY|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 5   NHRPG 9
           NHRPG
Sbjct: 905 NHRPG 909


>sp|LTP_HCMVM|LARGE tegument protein deneddylase|Human cytomegalovirus (strain Merlin)

Query: 1    PSPFNHRP 8
            P PFN  P
Sbjct: 2099 PVPFNRVP 2106


>sp|POLG_DEN2N|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1027 SQHNYRPG 1034


>sp|POLG_DEN2J|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1027 SQHNYRPG 1034


>sp|POLG_DEN28|GENOME polyprotein|Dengue virus type 2 (isolate

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1027 SQHNYRPG 1034


>sp|POLG_DEN26|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1027 SQHNYRPG 1034


>sp|LTP_HCMVT|LARGE tegument protein deneddylase|Human cytomegalovirus (strain Towne)

Query: 1    PSPFNHRP 8
            P PFN  P
Sbjct: 2100 PVPFNRVP 2107


>sp|LTP_HCMVA|LARGE tegument protein deneddylase|Human cytomegalovirus (strain AD169)

Query: 1    PSPFNHRP 8
            P PFN  P
Sbjct: 2099 PVPFNRVP 2106


>sp|POLN_HEVCH|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 5   NHRPG 9
           NHRPG
Sbjct: 905 NHRPG 909


>sp|POLG_DEN3S|GENOME polyprotein|Dengue virus type 3 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1025 SQHNYRPG 1032


>sp|POLN_HEVPA|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 5   NHRPG 9
           NHRPG
Sbjct: 905 NHRPG 909


>sp|SPI2_MONPV|SERINE proteinase inhibitor 2|Monkeypox virus (MPXV)

Query: 3   PFNH 6
           PFNH
Sbjct: 173 PFNH 176


>sp|POLG_DEN2D|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1027 SQHNYRPG 1034


>sp|VE2_HPV66|REGULATORY protein E2|Human papillomavirus 66

Query: 5   NHRPG 9
           +HRPG
Sbjct: 237 SHRPG 241


>sp|POLG_HE701|GENOME polyprotein|Human enterovirus 70 (strain J670/71)

Query: 1   PSPFNHRPG 9
           P+P  H PG
Sbjct: 349 PTPEMHIPG 357


>sp|POLG_EMCVR|GENOME polyprotein|Encephalomyocarditis virus (strain Rueckert) (EMCV)

Query: 1    PSPFNHRP 8
            P PF  RP
Sbjct: 1043 PGPFMFRP 1050


>sp|POLG_DEN2Q|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1027 SQHNNRPG 1034


>sp|POLG_EMCV|GENOME polyprotein|Encephalomyocarditis virus

Query: 1    PSPFNHRP 8
            P PF  RP
Sbjct: 1041 PGPFMFRP 1048


>sp|POLG_DEN2P|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    SPFNHRPG 9
            S  N+RPG
Sbjct: 1027 SQHNNRPG 1034


>sp|VE2_HPV56|REGULATORY protein E2|Human papillomavirus 56

Query: 5   NHRPG 9
           +HRPG
Sbjct: 180 SHRPG 184


>sp|NP03_HHV2H|NUCLEAR phosphoprotein UL3|Human herpesvirus 2 (strain HG52)

Query: 2  SPFNHRPGS 10
          +P NH PG+
Sbjct: 35 APQNHDPGA 43


>sp|NP03_HHV23|NUCLEAR phosphoprotein UL3|Human herpesvirus 2 (strain 333)

Query: 2  SPFNHRPGS 10
          +P NH PG+
Sbjct: 35 APQNHDPGA 43


>sp|NCAP_PI4HA|NUCLEOPROTEIN parainfluenza 4a virus (strain

Query: 2   SPFNH 6
           +PFNH
Sbjct: 490 NPFNH 494


>sp|VP2_ROTGA|INNER capsid protein VP2|Rotavirus B (isolate RVB/Human/China/ADRV/1982)

Query: 2   SPFNHR 7
           SPF HR
Sbjct: 327 SPFFHR 332


>sp|POLG_DEN2T|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2   SPFNHRPG 9
           S  N+RPG
Sbjct: 747 SQHNNRPG 754


>sp|DNBI_HHV1K|MAJOR DNA-binding protein|Human herpesvirus 1 (strain KOS)

Query: 1   PSPFNHRP 8
           P PF +RP
Sbjct: 228 PLPFFNRP 235


>sp|DNBI_HHV1F|MAJOR DNA-binding protein|Human herpesvirus 1 (strain F)

Query: 1   PSPFNHRP 8
           P PF +RP
Sbjct: 228 PLPFFNRP 235


>sp|DNBI_HHV11|MAJOR DNA-binding protein|Human herpesvirus 1 (strain 17)

Query: 1   PSPFNHRP 8
           P PF +RP
Sbjct: 228 PLPFFNRP 235


>sp|POL_HTLV2|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 2

Query: 1   PSPFNHRPGS 10
           P P N+ PG+
Sbjct: 701 PQPCNYGPGT 710


>sp|POLG_CX16G|GENOME polyprotein|Coxsackievirus A16 (strain G-10)

Query: 1   PSPFNHRPG 9
           P+P  H PG
Sbjct: 353 PTPAIHIPG 361


>sp|DNBI_HHV2|MAJOR DNA-binding protein|Human herpesvirus 2 (HHV-2) (Human

Query: 1   PSPFNHRP 8
           P PF +RP
Sbjct: 228 PLPFFNRP 235


>sp|US22_HCMVA|EARLY nuclear protein HWLF1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   PFNHRPGS 10
           PF+H P +
Sbjct: 248 PFDHMPAA 255


>sp|DNBI_HHV2H|MAJOR DNA-binding protein|Human herpesvirus 2 (strain HG52)

Query: 1   PSPFNHRP 8
           P PF +RP
Sbjct: 228 PLPFFNRP 235


>sp|POLG_HE71|GENOME polyprotein|Human enterovirus 71 (EV71) (EV-71)

Query: 1   PSPFNHRPG 9
           P+P  H PG
Sbjct: 353 PTPCIHIPG 361


>sp|US22_HCMVM|TEGUMENT protein US22|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   PFNHRPGS 10
           PF+H P +
Sbjct: 248 PFDHMPAA 255


>sp|POLS_WEEV|STRUCTURAL polyprotein|Western equine encephalitis virus (WEEV)

Query: 2   SPFNHR 7
           SPF+H+
Sbjct: 968 SPFDHK 973


>sp|POLG_HE71M|GENOME polyprotein|Human enterovirus 71 (strain 7423/MS/87)

Query: 1   PSPFNHRPG 9
           P+P  H PG
Sbjct: 353 PTPCIHIPG 361




64|Sequence|316|325|HRPGSHLDSH

>sp|POLG_DEN3P|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    HRPGSH 6
            HRPG H
Sbjct: 1029 HRPGYH 1034


>sp|POLG_DEN3M|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    HRPGSH 6
            HRPG H
Sbjct: 1029 HRPGYH 1034


>sp|POLG_DEN3I|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    HRPGSH 6
            HRPG H
Sbjct: 1029 HRPGYH 1034


>sp|POLG_DEN3C|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    HRPGSH 6
            HRPG H
Sbjct: 1029 HRPGYH 1034


>sp|POL_XMRV3|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP35)

Query: 1    HRPGSH 6
            HRPG+H
Sbjct: 1444 HRPGTH 1449


>sp|POL_XMRV6|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP62)

Query: 1    HRPGSH 6
            HRPG+H
Sbjct: 1444 HRPGTH 1449


>sp|POL_XMRV4|GAG-POL polyprotein|Xenotropic MuLV-related virus (isolate VP42)

Query: 1    HRPGSH 6
            HRPG+H
Sbjct: 1444 HRPGTH 1449


>sp|POLS_SINDO|STRUCTURAL polyprotein|Sindbis virus subtype Ockelbo (strain

Query: 1   HRPGSH 6
           HRPG H
Sbjct: 497 HRPGPH 502


>sp|POLS_WEEV|STRUCTURAL polyprotein|Western equine encephalitis virus (WEEV)

Query: 1   HRPGSH 6
           HRPG H
Sbjct: 488 HRPGPH 493


>sp|GB_HCMVT|ENVELOPE glycoprotein B|Human cytomegalovirus (strain Towne) (HHV-5)

Query: 2   RPGSHLDSH 10
           RP S L++H
Sbjct: 311 RPNSALETH 319


>sp|GB_HCMVM|ENVELOPE glycoprotein B|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2   RPGSHLDSH 10
           RP S L++H
Sbjct: 311 RPNSALETH 319


>sp|L_MACHU|RNA-DIRECTED RNA polymerase L|Machupo virus (MACV)

Query: 4   GSHLDS 9
           G+HLDS
Sbjct: 274 GAHLDS 279


>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related coronavirus

Query: 4    GSHLDSH 10
            G HLDS+
Sbjct: 4442 GHHLDSY 4448


>sp|UNG_EBVB9|URACIL-DNA glycosylase|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2   RPGSHLD 8
           +PGSH D
Sbjct: 158 KPGSHAD 164


>sp|UL31_HCMVA|PROTEIN UL31|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   HRPGSHLDSH 10
           HR  SHL ++
Sbjct: 151 HRSASHLTAY 160


>sp|VL1_HPV70|MAJOR capsid protein L1|Human papillomavirus type 70

Query: 2   RPGSHLDS 9
           RPG+H+ S
Sbjct: 283 RPGTHVYS 290


>sp|UL31_HCMVM|PROTEIN UL31|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   HRPGSHLDSH 10
           HR  SHL ++
Sbjct: 151 HRSASHLTAY 160


>sp|POLS_EEVV8|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 1   HRPGSHLD 8
           H PGS +D
Sbjct: 502 HLPGSEVD 509


>sp|POLS_EEVVT|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 1   HRPGSHLD 8
           H PGS +D
Sbjct: 502 HLPGSEVD 509


>sp|POLS_EEVVP|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 1   HRPGSHLD 8
           H PGS +D
Sbjct: 502 HLPGSEVD 509


>sp|POLS_EEVV3|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 1   HRPGSHLD 8
           H PGS +D
Sbjct: 502 HLPGSEVD 509


>sp|POLS_EEVVE|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 1   HRPGSHLD 8
           H PGS +D
Sbjct: 501 HLPGSEVD 508


>sp|A28_MCV1|ENVELOPE protein A28 homolog|Molluscum contagiosum virus subtype 1

Query: 4  GSHLDSH 10
          GS++D H
Sbjct: 51 GSYIDKH 57


>sp|POLS_EEVVM|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 1   HRPGSHLD 8
           H PGS +D
Sbjct: 501 HLPGSEVD 508




65|Sequence|321|330|HLDSHRRMAP

>sp|DPOL_ADE12|DNA polymerase|Human adenovirus A serotype 12

Query: 1    HLDSHR 6
            HLD+HR
Sbjct: 1034 HLDAHR 1039


>sp|POLG_ZIKV|GENOME polyprotein|Zika virus (ZIKV)

Query: 1   HLDSHRRMA 9
           H DS RR+A
Sbjct: 825 HPDSPRRLA 833


>sp|POLG_ZIKVK|GENOME polyprotein|Zika virus (isolate ZIKV/Human/Cambodia/FSS13025/2010)

Query: 1   HLDSHRRMA 9
           H DS RR+A
Sbjct: 829 HPDSPRRLA 837


>sp|POLG_ZIKVF|GENOME polyprotein|Zika virus (isolate ZIKV/Human/French

Query: 1   HLDSHRRMA 9
           H DS RR+A
Sbjct: 829 HPDSPRRLA 837


>sp|M22_HRSVB|PROTEIN M2-2|Human respiratory syncytial virus B

Query: 1  HLDSHRRM 8
          HLD+H+R+
Sbjct: 43 HLDNHQRL 50


>sp|UL76_HCMVM|PROTEIN UL76|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1  HLDSHRRM 8
          HLD +RR+
Sbjct: 31 HLDIYRRL 38


>sp|UL76_HCMVA|PROTEIN UL76|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1  HLDSHRRM 8
          HLD +RR+
Sbjct: 31 HLDIYRRL 38


>sp|NTP1_MCV1|NUCLEOSIDE triphosphatase I|Molluscum contagiosum virus subtype 1

Query: 5   HRRMA 9
           HRRMA
Sbjct: 288 HRRMA 292




66|Sequence|326|335|RRMAPTPIPT

>sp|PP85_HHV6Z|PHOSPHOPROTEIN 85|Human herpesvirus 6B (strain Z29)

Query: 1   RRMAPTPIPT 10
           RR APT +P+
Sbjct: 574 RRRAPTMVPS 583


>sp|POLN_RUBVM|NON-STRUCTURAL polyprotein p200|Rubella virus (strain M33) (RUBV)

Query: 1   RRMAPTPI 8
           RR+AP PI
Sbjct: 867 RRLAPCPI 874


>sp|GB_HHV7J|ENVELOPE glycoprotein B|Human herpesvirus 7 (strain JI)

Query: 1   RRMAPTPI 8
           +R+A TPI
Sbjct: 708 KRLAQTPI 715


>sp|POL_HV2BE|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 3   MAPTPIP 9
           M P+PIP
Sbjct: 373 MGPSPIP 379


>sp|DPOL_ORFN2|DNA polymerase|Orf virus (strain NZ2) (OV

Query: 1   RRMAPTP 7
           RRM P P
Sbjct: 590 RRMFPAP 596


>sp|POLG_HCVVA|GENOME polyprotein|Hepatitis C virus genotype 2k

Query: 1    RRMAPTPIP 9
             R APTP P
Sbjct: 2135 HRFAPTPKP 2143


>sp|PG034_MONPV|PROTEIN OPG034|Monkeypox virus (MPXV)

Query: 2  RMAPTPIP 9
          ++ PTP P
Sbjct: 83 KLTPTPKP 90


>sp|POLG_HCVJF|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 1    RRMAPTPIP 9
             R APTP P
Sbjct: 2135 HRFAPTPKP 2143


>sp|PRO_HTLV2|GAG-PRO polyprotein|Human T-cell leukemia virus 2

Query: 3  MAPTPIP 9
          ++PTPIP
Sbjct: 7  LSPTPIP 13


>sp|POL_HV2CA|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 3   MAPTPIP 9
           M P PIP
Sbjct: 373 MGPPPIP 379


>sp|POL_HV2SB|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 3   MAPTPIP 9
           M P PIP
Sbjct: 372 MRPAPIP 378


>sp|GAG_HV2BE|GAG polyprotein|Human immunodeficiency virus type 2

Query: 3   MAPTPIP 9
           M P+PIP
Sbjct: 373 MGPSPIP 379


>sp|POLN_RRVN|POLYPROTEIN P1234|Ross river virus (strain NB5092)

Query: 2    RMAPTPIP 9
            R++PTP P
Sbjct: 1783 RVSPTPTP 1790


>sp|POLN_RRVT|POLYPROTEIN nsP1234|Ross river virus (strain T48)

Query: 2   RMAPTPIP 9
           R++PTP P
Sbjct: 452 RVSPTPTP 459


>sp|CAPSD_HBOC1|MINOR capsid protein VP1|Primate bocaparvovirus 1 (strain Human

Query: 2   RMAPTPIPT 10
           +MA  P+PT
Sbjct: 580 KMAKIPVPT 588


>sp|POLN_RUBVV|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336) (RUBV)

Query: 1   RRMAPTP 7
           RR+AP P
Sbjct: 867 RRLAPCP 873


>sp|POLN_RUBVO|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336 vaccine)

Query: 1   RRMAPTP 7
           RR+AP P
Sbjct: 867 RRLAPCP 873


>sp|POLN_RUBVN|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RN-UK86) (RUBV)

Query: 1   RRMAPTP 7
           RR+AP P
Sbjct: 867 RRLAPCP 873


>sp|CAPSD_HASV3|CAPSID polyprotein VP90|Human astrovirus-3 (HAstV-3)

Query: 5   PTPIP 9
           PTPIP
Sbjct: 502 PTPIP 506


>sp|POLN_RUBVC|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRDII) (RUBV)

Query: 1   RRMAPTP 7
           RR+AP P
Sbjct: 867 RRLAPCP 873


>sp|POLN_RUBVT|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Therien) (RUBV)

Query: 1   RRMAPTP 7
           RR+AP P
Sbjct: 867 RRLAPCP 873


>sp|POLN_RUBVD|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Cendehill) (RUBV)

Query: 1   RRMAPTP 7
           RR+AP P
Sbjct: 867 RRLAPCP 873


>sp|POLN_RUBVB|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRD1) (RUBV)

Query: 1   RRMAPTP 7
           RR+AP P
Sbjct: 867 RRLAPCP 873


>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)

Query: 1   RRMAPTP 7
           RR+AP P
Sbjct: 867 RRLAPCP 873


>sp|SCAF_HHV8P|CAPSID scaffolding protein|Human herpesvirus 8 type P

Query: 1   RRMAPTPIPT 10
            + APTP PT
Sbjct: 497 EKDAPTPNPT 506


>sp|BNL2B_EBVA8|UNCHARACTERIZED protein BNLF2b|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 5  PTPIPT 10
          PTP+PT
Sbjct: 41 PTPMPT 46


>sp|BNL2B_EBVG|UNCHARACTERIZED protein BNLF2b|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 5  PTPIPT 10
          PTP+PT
Sbjct: 41 PTPMPT 46


>sp|BNL2B_EBVB9|UNCHARACTERIZED protein BNLF2b|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 5  PTPIPT 10
          PTP+PT
Sbjct: 41 PTPMPT 46




67|Sequence|331|340|TPIPTRSPSD

>sp|US23_HCMVM|PROTEIN US23|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   TPIPTRSPSD 10
           TP  TR P D
Sbjct: 163 TPFATRVPHD 172


>sp|US23_HCMVA|TEGUMENT protein US23|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   TPIPTRSPSD 10
           TP  TR P D
Sbjct: 163 TPFATRVPHD 172


>sp|GM_EBVG|ENVELOPE glycoprotein M|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 2   PIPTRSPS 9
           P P+R+PS
Sbjct: 352 PRPSRTPS 359


>sp|GM_EBVB9|ENVELOPE glycoprotein M|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2   PIPTRSPS 9
           P P+R+PS
Sbjct: 352 PRPSRTPS 359


>sp|GM_EBVA8|ENVELOPE glycoprotein M|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 2   PIPTRSPS 9
           P P+R+PS
Sbjct: 352 PRPSRTPS 359


>sp|U17_HHV6Z|PROTEIN U17|Human herpesvirus 6B (strain Z29)

Query: 2  PIPTRSPSD 10
          P PT+S ++
Sbjct: 64 PFPTKSAAE 72


>sp|U17_HHV6U|PROTEIN U17|Human herpesvirus 6A (strain Uganda-1102)

Query: 2  PIPTRSPSD 10
          P PT+S ++
Sbjct: 64 PFPTKSAAE 72


>sp|PA_I73A4|POLYMERASE acidic protein|Influenza A virus (strain A/Equine/London/1416/1973

Query: 1   TPIPTRSP 8
           TP P R+P
Sbjct: 264 TPRPLRTP 271


>sp|U16_HHV6G|PROTEIN U17/U16|Human herpesvirus 6A (strain GS)

Query: 2  PIPTRSPSD 10
          P PT+S ++
Sbjct: 64 PFPTKSAAE 72


>sp|U16_HHV6U|PROTEIN U17/U16|Human herpesvirus 6A (strain Uganda-1102)

Query: 2  PIPTRSPSD 10
          P PT+S ++
Sbjct: 64 PFPTKSAAE 72


>sp|POLN_RUBVC|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRDII) (RUBV)

Query: 1    TPIPTRSPSD 10
            TP+P R P++
Sbjct: 1457 TPVPDRWPTE 1466


>sp|POLN_RUBVB|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRD1) (RUBV)

Query: 1    TPIPTRSPSD 10
            TP+P R P++
Sbjct: 1457 TPVPDRWPTE 1466


>sp|HEMA_INCCA|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/California/1978)

Query: 2   PIPTRSPSD 10
           P+PT  P D
Sbjct: 606 PVPTIPPLD 614


>sp|POLN_RUBVV|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336) (RUBV)

Query: 1    TPIPTRSPSD 10
            TP+P R P++
Sbjct: 1457 TPVPDRWPTE 1466


>sp|POLN_RUBVT|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Therien) (RUBV)

Query: 1    TPIPTRSPSD 10
            TP+P R P++
Sbjct: 1457 TPVPDRWPTE 1466


>sp|POLN_RUBVN|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RN-UK86) (RUBV)

Query: 1    TPIPTRSPSD 10
            TP+P R P++
Sbjct: 1457 TPVPDRWPTE 1466


>sp|POLN_RUBVD|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Cendehill) (RUBV)

Query: 1    TPIPTRSPSD 10
            TP+P R P++
Sbjct: 1457 TPVPDRWPTE 1466


>sp|HEMA_INCJH|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/Johannesburg/1/1966)

Query: 2   PIPTRSPSD 10
           P+PT  P D
Sbjct: 607 PVPTIPPLD 615


>sp|HEMA_INCAA|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/Ann

Query: 2   PIPTRSPSD 10
           P+PT  P D
Sbjct: 607 PVPTIPPLD 615


>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)

Query: 1    TPIPTRSPSD 10
            TP+P R P++
Sbjct: 1457 TPVPDRWPTE 1466


>sp|POLN_RUBVO|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336 vaccine)

Query: 1    TPIPTRSPSD 10
            TP+P R P++
Sbjct: 1457 TPVPDRWPTE 1466


>sp|HEMA_INCNB|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/Nara/2/1985)

Query: 2   PIPTRSPSD 10
           P+PT  P D
Sbjct: 600 PVPTIPPLD 608


>sp|HEMA_INCYA|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/Yamagata/10/1981)

Query: 2   PIPTRSPSD 10
           P+PT  P D
Sbjct: 594 PVPTIPPLD 602


>sp|HEMA_INCP1|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/Pig/Beijing/10/1981)

Query: 2   PIPTRSPSD 10
           P+PT  P D
Sbjct: 594 PVPTIPPLD 602


>sp|HEMA_INCYB|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/Yamagata/4/1988)

Query: 2   PIPTRSPSD 10
           P+PT  P D
Sbjct: 600 PVPTIPPLD 608


>sp|HEMA_INCTA|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/Taylor/1233/1947)

Query: 2   PIPTRSPSD 10
           P+PT  P D
Sbjct: 594 PVPTIPPLD 602


>sp|HEMA_INCP2|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/Pig/Beijing/115/1981)

Query: 2   PIPTRSPSD 10
           P+PT  P D
Sbjct: 594 PVPTIPPLD 602


>sp|VE2_HPV10|REGULATORY protein E2|Human papillomavirus type 10

Query: 4   PTRSPSD 10
           P R PSD
Sbjct: 286 PVRHPSD 292


>sp|HEMA_INCP3|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/Pig/Beijing/439/1982)

Query: 2   PIPTRSPSD 10
           P+PT  P D
Sbjct: 594 PVPTIPPLD 602


>sp|NCAP_DUGBV|NUCLEOPROTEIN virus

Query: 3   IPTRSPSD 10
           IP  SP D
Sbjct: 395 IPVASPED 402


>sp|NCAP_DUGBA|NUCLEOPROTEIN virus (isolate ArD44313) (DUGV)

Query: 3   IPTRSPSD 10
           IP  SP D
Sbjct: 396 IPVASPED 403


>sp|POLG_HCVIN|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 4   PTRSPSD 10
           P+R PSD
Sbjct: 105 PSRGPSD 111


>sp|VL2_HPV34|MINOR capsid protein L2|Human papillomavirus type 34

Query: 1   TPIPTRSP 8
           TPIP R P
Sbjct: 219 TPIPGRHP 226


>sp|ORF50_HHV8P|REPLICATION and transcription activator|Human herpesvirus 8 type P

Query: 1   TPIPTRSPS 9
           TP P RSPS
Sbjct: 628 TPPPLRSPS 636


>sp|EBNA3_EBVB9|EPSTEIN-BARR nuclear antigen 3|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   TPIPTRSPSD 10
           TP P RSPS 
Sbjct: 585 TPNPPRSPSQ 594


>sp|EBNA3_EBVG|EPSTEIN-BARR nuclear antigen 3|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   TPIPTRSPSD 10
           TP P RSPS 
Sbjct: 585 TPNPPRSPSQ 594


Query: 1   TPIPTRSPSD 10
           TP+P  SP D
Sbjct: 477 TPLPPVSPGD 486


>sp|EBNA3_EBVA8|EPSTEIN-BARR nuclear antigen 3|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   TPIPTRSPSD 10
           TP P RSPS 
Sbjct: 566 TPNPPRSPSQ 575


>sp|US33_HCMVA|UNCHARACTERIZED protein HHLF3|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   TPIPTRSP 8
           TP+ TRSP
Sbjct: 123 TPVGTRSP 130


>sp|POLN_RUBVM|NON-STRUCTURAL polyprotein p200|Rubella virus (strain M33) (RUBV)

Query: 1    TPIPTRSPS 9
            TP+P R P+
Sbjct: 1457 TPVPDRWPT 1465




68|Sequence|336|345|RSPSDSSTAS

>sp|TRM1_VZVD|TRIPARTITE terminase subunit 1|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 1   RSPSDSSTAS 10
           +  SDS+TAS
Sbjct: 440 KEASDSATAS 449


>sp|PKG3_ADE02|PACKAGING protein 3|Human adenovirus C serotype 2

Query: 1  RSPSDSSTAS 10
          R+PS S TAS
Sbjct: 25 RAPSPSPTAS 34




69|Sequence|341|350|SSTASTPVAE

>sp|VL2_HPV1|MINOR capsid protein L2|Human papillomavirus type 1 (Human

Query: 3   TASTPVAE 10
           ++STP+AE
Sbjct: 235 SSSTPIAE 242


>sp|UL150_HCMVM|UNCHARACTERIZED protein UL150|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1  SSTASTPVAE 10
          +S+ASTPV+ 
Sbjct: 85 ASSASTPVSH 94




70|Sequence|346|355|TPVAEQIERA

>sp|POLG_CXB2O|GENOME polyprotein|Coxsackievirus B2 (strain Ohio-1)

Query: 1   TPVAEQIERA 10
           +PV E IER+
Sbjct: 572 SPVEESIERS 581


>sp|ENV_FOAMV|ENVELOPE glycoprotein gp130|Human spumaretrovirus (SFVcpz(hu)) (Human foamy

Query: 3   VAEQIERA 10
           + EQIERA
Sbjct: 891 IKEQIERA 898


>sp|TRX2_EBVB9|TRIPLEX capsid protein 2|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   TPVAEQI 7
           TP+AE++
Sbjct: 140 TPIAEEV 146


>sp|GH_HHV2H|ENVELOPE glycoprotein H|Human herpesvirus 2 (strain HG52)

Query: 2   PVAEQIERA 10
           P AEQ ERA
Sbjct: 535 PSAEQRERA 543


>sp|VP2_ROTYO|INNER capsid protein VP2|Rotavirus A (strain

Query: 5   EQIERA 10
           EQIERA
Sbjct: 700 EQIERA 705


>sp|VP2_ROTHW|INNER capsid protein VP2|Rotavirus A (strain RVA/Human/United

Query: 5   EQIERA 10
           EQIERA
Sbjct: 700 EQIERA 705


>sp|VP2_ROTHT|INNER capsid protein VP2|Rotavirus A (strain RVA/Human/United

Query: 5   EQIERA 10
           EQIERA
Sbjct: 700 EQIERA 705


>sp|VP2_ROTAD|INNER capsid protein VP2|Rotavirus A (strain RVA/Human/United

Query: 5   EQIERA 10
           EQIERA
Sbjct: 700 EQIERA 705


>sp|VP2_ROTHP|INNER capsid protein VP2|Rotavirus A (strain RVA/Human/United

Query: 5   EQIERA 10
           EQIERA
Sbjct: 706 EQIERA 711


>sp|VP2_ROTHK|INNER capsid protein VP2|Rotavirus A (strain

Query: 5   EQIERA 10
           EQIERA
Sbjct: 702 EQIERA 707


>sp|VP2_ROTH3|INNER capsid protein VP2|Rotavirus A (strain

Query: 5   EQIERA 10
           EQIERA
Sbjct: 697 EQIERA 702


>sp|VL2_HPV24|MINOR capsid protein L2|Human papillomavirus 24

Query: 2   PVAEQIE 8
           P+AEQ+E
Sbjct: 406 PLAEQME 412


>sp|ENV_SFV3L|ENVELOPE glycoprotein gp130|Simian foamy virus type 3

Query: 3   VAEQIERA 10
           + +QIERA
Sbjct: 884 IKDQIERA 891


>sp|ENV_SFV1|ENVELOPE glycoprotein gp130|Simian foamy virus type 1

Query: 3   VAEQIERA 10
           + +QIERA
Sbjct: 891 IKDQIERA 898




71|Sequence|351|360|QIERALDEVT

>sp|POLG_HCVTR|GENOME polyprotein|Hepatitis C virus genotype 3b

Query: 1    QIERALD 7
            Q+ERALD
Sbjct: 2870 QLERALD 2876


>sp|VP35_MABVO|POLYMERASE cofactor VP35|Lake Victoria marburgvirus (strain Ozolin-75)

Query: 1   QIERALDEVT 10
           +IER L E+T
Sbjct: 99  EIERQLHEIT 108


>sp|VP35_MABVP|POLYMERASE cofactor VP35|Lake Victoria marburgvirus (strain Popp-67)

Query: 1   QIERALDEVT 10
           +IER L E+T
Sbjct: 99  EIERQLHEIT 108


>sp|VP35_MABVM|POLYMERASE cofactor VP35|Lake Victoria marburgvirus (strain Musoke-80)

Query: 1   QIERALDEVT 10
           +IER L E+T
Sbjct: 99  EIERQLHEIT 108


>sp|VP35_MABVA|POLYMERASE cofactor VP35|Lake Victoria marburgvirus (strain Angola/2005)

Query: 1   QIERALDEVT 10
           +IER L E+T
Sbjct: 99  EIERQLHEIT 108


>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)

Query: 2 IERALDEV 9
         +ER LDEV
Sbjct: 1 MERLLDEV 8


>sp|POLG_HCVTW|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2857 QLEKALD 2863


>sp|POLG_HCVR6|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2857 QLEKALD 2863


>sp|POLG_HCVJT|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2857 QLEKALD 2863


>sp|POLG_HCVJK|GENOME polyprotein|Hepatitis C virus genotype 3k

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2866 QLEKALD 2872


>sp|POLG_HCVJA|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2857 QLEKALD 2863


>sp|POLG_HCVJ4|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2857 QLEKALD 2863


>sp|POLG_HCVCO|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2857 QLEKALD 2863


>sp|POLG_HCVBK|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2857 QLEKALD 2863


>sp|POLG_HCV6A|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2866 QLEKALD 2872


>sp|POLG_HRV16|GENOME polyprotein|Human rhinovirus 16 (HRV-16)

Query: 2   IERALDEV 9
           +ER +DEV
Sbjct: 571 VERYVDEV 578


>sp|POLG_HCVJ1|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2858 QLEQALD 2864


>sp|POLG_HCV1|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 1    QIERALD 7
            Q+E+ALD
Sbjct: 2858 QLEQALD 2864


>sp|NCAP_MABVP|NUCLEOPROTEIN Victoria marburgvirus (strain Popp-67)

Query: 2   IERALDEVT 10
           IE+AL +VT
Sbjct: 151 IEKALRQVT 159


>sp|NCAP_MABVO|NUCLEOPROTEIN Victoria marburgvirus (strain Ozolin-75)

Query: 2   IERALDEVT 10
           IE+AL +VT
Sbjct: 151 IEKALRQVT 159


>sp|NCAP_MABVA|NUCLEOPROTEIN Victoria marburgvirus (strain Angola/2005)

Query: 2   IERALDEVT 10
           IE+AL +VT
Sbjct: 151 IEKALRQVT 159


>sp|NCAP_MABVR|NUCLEOPROTEIN Victoria marburgvirus (strain Ravn-87)

Query: 2   IERALDEVT 10
           IE+AL +VT
Sbjct: 151 IEKALRQVT 159


>sp|NCAP_MABVM|NUCLEOPROTEIN Victoria marburgvirus (strain Musoke-80)

Query: 2   IERALDEVT 10
           IE+AL +VT
Sbjct: 151 IEKALRQVT 159


>sp|VP4_ROTHU|OUTER capsid protein VP4|Rotavirus A (isolate

Query: 2   IERALDEV 9
           +ER LDE+
Sbjct: 493 LERQLDEM 500


>sp|LTP_HHV8P|LARGE tegument protein deneddylase|Human herpesvirus 8 type P

Query: 2    IERALDEVT 10
            ++RA+DE++
Sbjct: 1533 LQRAVDELS 1541


>sp|TRM3_HCMVM|TRIPARTITE terminase subunit 3|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1  QIERALDEVT 10
          +++ ALDE+T
Sbjct: 88 RLKSALDELT 97




72|Sequence|356|365|LDEVTSSQPP

>sp|PG089_VACCC|PUTATIVE nuclease OPG089|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1   LDEVTSSQPP 10
           LD+V S  PP
Sbjct: 302 LDDVYSYVPP 311


>sp|PG089_VARV|PUTATIVE nuclease OPG089|Variola virus

Query: 1   LDEVTSSQPP 10
           LD+V S  PP
Sbjct: 302 LDDVYSYIPP 311


>sp|PG089_VAR67|PUTATIVE nuclease OPG089|Variola virus (isolate Human/India/Ind3/1967)

Query: 1   LDEVTSSQPP 10
           LD+V S  PP
Sbjct: 302 LDDVYSYIPP 311


>sp|PG089_MONPV|PUTATIVE nuclease OPG089|Monkeypox virus (MPXV)

Query: 1   LDEVTSSQPP 10
           LD+V S  PP
Sbjct: 302 LDDVYSYIPP 311


>sp|VE2_HPV09|REGULATORY protein E2|Human papillomavirus 9

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSSPP 204


>sp|VE2_HPV05|REGULATORY protein E2|Human papillomavirus 5

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV47|REGULATORY protein E2|Human papillomavirus 47

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV25|REGULATORY protein E2|Human papillomavirus 25

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV19|REGULATORY protein E2|Human papillomavirus 19

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV36|REGULATORY protein E2|Human papillomavirus 36

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 197 VTSSTPP 203


>sp|VE2_HPV5B|REGULATORY protein E2|Human papillomavirus type 5b

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV38|REGULATORY protein E2|Human papillomavirus 38

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV24|REGULATORY protein E2|Human papillomavirus 24

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV23|REGULATORY protein E2|Human papillomavirus 23

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV20|REGULATORY protein E2|Human papillomavirus 20

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV14|REGULATORY protein E2|Human papillomavirus 14

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV21|REGULATORY protein E2|Human papillomavirus 21

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV49|REGULATORY protein E2|Human papillomavirus type 49

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV22|REGULATORY protein E2|Human papillomavirus 22

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV12|REGULATORY protein E2|Human papillomavirus 12

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|VE2_HPV08|REGULATORY protein E2|Human papillomavirus type 8

Query: 4   VTSSQPP 10
           VTSS PP
Sbjct: 198 VTSSTPP 204


>sp|RDRP_ROTYO|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 2   DEVTSSQ 8
           DE+ SSQ
Sbjct: 800 DEIASSQ 806


>sp|ICP4_VZVD|MAJOR viral transcription factor ICP4|Varicella-zoster virus (strain

Query: 4  VTSSQP 9
          VTSSQP
Sbjct: 40 VTSSQP 45


>sp|ICP4_VZVO|MAJOR viral transcription factor ICP4|Varicella-zoster virus (strain

Query: 4  VTSSQP 9
          VTSSQP
Sbjct: 40 VTSSQP 45


>sp|RDRP_ROTWI|RNA-DIRECTED RNA polymerase|Rotavirus A (isolate RVA/Human/United

Query: 2   DEVTSSQ 8
           DE+ SSQ
Sbjct: 800 DEIASSQ 806


>sp|RDRP_ROTHW|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 2   DEVTSSQ 8
           DE+ SSQ
Sbjct: 800 DEIASSQ 806


>sp|RDRP_ROTHP|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 2   DEVTSSQ 8
           DE+ SSQ
Sbjct: 800 DEIASSQ 806


>sp|RDRP_ROTHT|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 2   DEVTSSQ 8
           DE+ SSQ
Sbjct: 800 DEIASSQ 806


>sp|RDRP_ROTHK|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 2   DEVTSSQ 8
           DE+ SSQ
Sbjct: 800 DEIASSQ 806


>sp|RDRP_ROTAD|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 2   DEVTSSQ 8
           DE+ SSQ
Sbjct: 800 DEIASSQ 806




73|Sequence|361|370|SSQPPPLPPP

>sp|K15_HHV8P|PROTEIN K15|Human herpesvirus 8 type P

Query: 4   PPPLPP 9
           PPPLPP
Sbjct: 386 PPPLPP 391


>sp|GB_HHV2H|ENVELOPE glycoprotein B|Human herpesvirus 2 (strain HG52)

Query: 1  SSQPPPLPPP 10
          +S+PPP+P P
Sbjct: 47 ASRPPPVPSP 56


>sp|GB_HHV23|ENVELOPE glycoprotein B|Human herpesvirus 2 (strain 333)

Query: 1  SSQPPPLPPP 10
          +S+PPP+P P
Sbjct: 47 ASRPPPVPSP 56


>sp|VE2_HPV57|REGULATORY protein E2|Human papillomavirus 57

Query: 1   SSQPPPLPPP 10
           S+Q P  PPP
Sbjct: 242 SAQAPSSPPP 251


>sp|CEP1_HCMVM|CYTOPLASMIC envelopment protein 1|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 4   PPPLPP 9
           PP LPP
Sbjct: 236 PPKLPP 241


>sp|CEP1_HCMVA|CYTOPLASMIC envelopment protein 1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 4   PPPLPP 9
           PP LPP
Sbjct: 236 PPKLPP 241


>sp|GM_HHV8P|ENVELOPE glycoprotein M|Human herpesvirus 8 type P

Query: 3   QPPPLP 8
           +PPPLP
Sbjct: 356 KPPPLP 361


>sp|POLN_SINDO|POLYPROTEIN P1234|Sindbis virus subtype Ockelbo (strain

Query: 3    QPPPLPPP 10
            +P P+PPP
Sbjct: 1762 EPAPIPPP 1769


>sp|NS1_I85A3|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Victoria/1/1985

Query: 5   PPLPP 9
           PPLPP
Sbjct: 212 PPLPP 216


>sp|NS1_I80A2|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Seal/Massachusetts/1/1980

Query: 5   PPLPP 9
           PPLPP
Sbjct: 212 PPLPP 216


>sp|NS1_I78A3|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Mallard/New

Query: 5   PPLPP 9
           PPLPP
Sbjct: 212 PPLPP 216


>sp|NS1_I18A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Brevig

Query: 5   PPLPP 9
           PPLPP
Sbjct: 212 PPLPP 216


>sp|NS1_I01A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Silky

Query: 5   PPLPP 9
           PPLPP
Sbjct: 207 PPLPP 211


>sp|NS1_I78A4|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Mallard/New

Query: 5   PPLPP 9
           PPLPP
Sbjct: 212 PPLPP 216


>sp|NS1_I01A1|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Hong

Query: 5   PPLPP 9
           PPLPP
Sbjct: 207 PPLPP 211


>sp|NS1_I00A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Duck/Hong

Query: 5   PPLPP 9
           PPLPP
Sbjct: 207 PPLPP 211


>sp|NS1_I59A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Scotland/1959

Query: 5   PPLPP 9
           PPLPP
Sbjct: 212 PPLPP 216


>sp|POLN_SINDV|POLYPROTEIN P1234|Sindbis virus (SINV)

Query: 3    QPPPLPPP 10
            +P P+PPP
Sbjct: 1765 EPAPIPPP 1772


>sp|NS1_I82A8|NON-STRUCTURAL protein 1|Influenza A virus (strain

Query: 5   PPLPP 9
           PPLPP
Sbjct: 212 PPLPP 216


>sp|L_HTRV|RNA-DIRECTED RNA polymerase L|Heartland virus (HTRV)

Query: 4   PPPLPPP 10
           PP LP P
Sbjct: 677 PPLLPKP 683


>sp|NS1_I02A7|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Teal/China/2978.1/2002

Query: 5   PPLPP 9
           PPLPP
Sbjct: 190 PPLPP 194


>sp|NS1_I01A3|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Hong

Query: 5   PPLPP 9
           PPLPP
Sbjct: 207 PPLPP 211


>sp|NS1_I01A2|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Hong

Query: 5   PPLPP 9
           PPLPP
Sbjct: 207 PPLPP 211


>sp|NS1_I24A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Japan/1924

Query: 5   PPLPP 9
           PPLPP
Sbjct: 209 PPLPP 213


>sp|MCEL_CWPXB|MRNA-CAPPING enzyme catalytic subunit|Cowpox virus (strain Brighton Red)

Query: 5   PPLPPP 10
           PP+ PP
Sbjct: 231 PPINPP 236


>sp|VICA_HCMVM|VIRAL inhibitor of caspase-8-induced apoptosis|Human cytomegalovirus

Query: 5   PPLPPP 10
           PPL PP
Sbjct: 465 PPLTPP 470


>sp|UL36_HCMVA|UNCHARACTERIZED protein UL36|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 5   PPLPPP 10
           PPL PP
Sbjct: 465 PPLTPP 470


>sp|POLN_RUBVB|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRD1) (RUBV)

Query: 4    PPPLPP 9
            PPPLPP
Sbjct: 1618 PPPLPP 1623


>sp|POLN_RUBVN|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RN-UK86) (RUBV)

Query: 4    PPPLPP 9
            PPPLPP
Sbjct: 1618 PPPLPP 1623


>sp|POLN_RUBVC|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRDII) (RUBV)

Query: 4    PPPLPP 9
            PPPLPP
Sbjct: 1618 PPPLPP 1623


>sp|POLN_RUBVT|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Therien) (RUBV)

Query: 4    PPPLPP 9
            PPPLPP
Sbjct: 1618 PPPLPP 1623


>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)

Query: 4    PPPLPP 9
            PPPLPP
Sbjct: 1618 PPPLPP 1623


>sp|POLN_RUBVD|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Cendehill) (RUBV)

Query: 4    PPPLPP 9
            PPPLPP
Sbjct: 1618 PPPLPP 1623


>sp|POLN_RUBVV|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336) (RUBV)

Query: 4    PPPLPP 9
            PPPLPP
Sbjct: 1618 PPPLPP 1623


>sp|POLN_RUBVO|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336 vaccine)

Query: 4    PPPLPP 9
            PPPLPP
Sbjct: 1618 PPPLPP 1623


>sp|POLN_RUBVM|NON-STRUCTURAL polyprotein p200|Rubella virus (strain M33) (RUBV)

Query: 4    PPPLPP 9
            PPPLPP
Sbjct: 1618 PPPLPP 1623


>sp|L_RVFV|RNA-DIRECTED RNA polymerase L|Rift valley fever virus (RVFV)

Query: 4   PPPLPPP 10
           PP +P P
Sbjct: 682 PPEIPKP 688


>sp|L_RVFVZ|RNA-DIRECTED RNA polymerase L|Rift valley fever virus (strain

Query: 4   PPPLPPP 10
           PP +P P
Sbjct: 682 PPEIPKP 688


>sp|VEMP_MERS1|ENVELOPE small membrane protein|Middle East respiratory syndrome-related

Query: 5  PPLPP 9
          PPLPP
Sbjct: 74 PPLPP 78


>sp|POLN_WEEV|POLYPROTEIN P1234|Western equine encephalitis virus (WEEV)

Query: 1    SSQPPPLPPP 10
            ++  PP+P P
Sbjct: 1814 TASAPPVPKP 1823


>sp|DNB2_ADE12|DNA-BINDING protein|Human adenovirus A serotype 12

Query: 1  SSQPPP 6
          S+QPPP
Sbjct: 16 SAQPPP 21


>sp|GP_CCHFI|ENVELOPMENT polyprotein|Crimean-Congo hemorrhagic fever virus (strain

Query: 2   SQPPPLPP 9
           S  PP PP
Sbjct: 180 SNRPPTPP 187


>sp|VE1_HPV54|REPLICATION protein E1|Human papillomavirus type 54

Query: 2   SQPPP 6
           +QPPP
Sbjct: 131 AQPPP 135


>sp|TERM_ADE40|PRETERMINAL protein|Human adenovirus F serotype 40

Query: 5   PPLPP 9
           PPLPP
Sbjct: 634 PPLPP 638


>sp|NS1A_HASV5|NON-STRUCTURAL polyprotein 1A|Human astrovirus-5 (HAstV-5)

Query: 1   SSQPPPLPPP 10
           +++P P P P
Sbjct: 764 TTKPKPCPEP 773


>sp|POL_HV2G1|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 4   PPPLP 8
           PPP+P
Sbjct: 376 PPPIP 380


>sp|NS1A_HASV8|NON-STRUCTURAL polyprotein 1A|Human astrovirus-8 (HAstV-8)

Query: 1   SSQPPPLPPP 10
           +++P P P P
Sbjct: 765 TTKPKPCPEP 774


>sp|POL_HV2CA|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 4   PPPLP 8
           PPP+P
Sbjct: 375 PPPIP 379




74|Sequence|366|375|PLPPPPPPAQ

>sp|POLG_WSLV|GENOME polyprotein|Wesselsbron virus (WSLV)

Query: 4    PPPPPA 9
            PPPPP 
Sbjct: 2864 PPPPPG 2869


Query: 3    PPPPP 7
            PPPPP
Sbjct: 2864 PPPPP 2868


>sp|PG097_VARV|PROTEIN OPG097|Variola virus

Query: 2  LPPPPPPAQ 10
          L P PPP Q
Sbjct: 47 LQPSPPPRQ 55


>sp|PG097_VAR67|PROTEIN OPG097|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 2  LPPPPPPAQ 10
          L P PPP Q
Sbjct: 47 LQPSPPPRQ 55


>sp|L_VSIVN|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    PLPPPPP 7
            P+PP PP
Sbjct: 1950 PMPPNPP 1956


Query: 4    PPPPPA 9
            PP PP+
Sbjct: 1952 PPNPPS 1957


>sp|PORTL_HHV11|PORTAL protein|Human herpesvirus 1 (strain 17)

Query: 2   LPPPPPP 8
           LPPPP P
Sbjct: 625 LPPPPSP 631


Query: 5   PPPPA 9
           PPPP+
Sbjct: 626 PPPPS 630


>sp|L_VSIVS|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    PLPPPPP 7
            P+PP PP
Sbjct: 1950 PIPPNPP 1956


Query: 4    PPPPPA 9
            PP PP+
Sbjct: 1952 PPNPPS 1957


>sp|L_VSIVM|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    PLPPPPP 7
            P+PP PP
Sbjct: 1950 PIPPNPP 1956


Query: 4    PPPPPA 9
            PP PP+
Sbjct: 1952 PPNPPS 1957


>sp|L_VSIVC|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    PLPPPPP 7
            P+PP PP
Sbjct: 1950 PVPPNPP 1956


Query: 4    PPPPPA 9
            PP PP+
Sbjct: 1952 PPNPPS 1957


>sp|L_VSIVA|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    PLPPPPP 7
            P+PP PP
Sbjct: 1950 PIPPNPP 1956


Query: 4    PPPPPA 9
            PP PP+
Sbjct: 1952 PPNPPS 1957


>sp|US17_HCMVM|PROTEIN US17|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3  PPPPPPAQ 10
          PPPP P++
Sbjct: 14 PPPPRPSR 21


>sp|US17_HCMVA|UNCHARACTERIZED protein HVLF1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3  PPPPPPAQ 10
          PPPP P++
Sbjct: 14 PPPPRPSR 21


>sp|K15_HHV8P|PROTEIN K15|Human herpesvirus 8 type P

Query: 3   PPPPPP 8
           PPP PP
Sbjct: 386 PPPLPP 391


>sp|POLG_LORDV|GENOME polyprotein|Lordsdale virus (strain GII/Human/United

Query: 2  LPPPPP 7
          +PPPPP
Sbjct: 68 IPPPPP 73


Query: 4  PPPPP 8
          PPPPP
Sbjct: 69 PPPPP 73


>sp|PORTL_HHV2H|PORTAL protein|Human herpesvirus 2 (strain HG52)

Query: 1   PLPPPPPPA 9
           P PP P PA
Sbjct: 622 PRPPSPTPA 630


Query: 2   LPPPPPP 8
           LP PP P
Sbjct: 621 LPRPPSP 627


>sp|CEP1_HCMVM|CYTOPLASMIC envelopment protein 1|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   PLPPPPPP 8
           P PP  PP
Sbjct: 234 PSPPKLPP 241


>sp|CEP1_HCMVA|CYTOPLASMIC envelopment protein 1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   PLPPPPPP 8
           P PP  PP
Sbjct: 234 PSPPKLPP 241


>sp|V_MEASC|NON-STRUCTURAL protein V|Measles virus (strain Ichinose-B95a) (MeV)

Query: 2   LPPPPPPAQ 10
           +PPPP P++
Sbjct: 212 VPPPPNPSR 220


>sp|POLN_SFV|POLYPROTEIN P1234|Semliki forest virus (SFV)

Query: 1    PLPPPPP 7
            P+PPP P
Sbjct: 1744 PIPPPRP 1750


>sp|POLG_HRV1B|GENOME polyprotein|Human rhinovirus 1B (HRV-1B)

Query: 2    LPPPPPPA 9
            L  PPPPA
Sbjct: 1421 LDAPPPPA 1428


>sp|POLG_HPE2W|GENOME polyprotein|Human parechovirus 2 (strain Williamson)

Query: 1   PLPPPPPPAQ 10
           PLP P P  +
Sbjct: 751 PLPAPKPATR 760


>sp|V_MEASY|NON-STRUCTURAL protein V|Measles virus (strain Yamagata-1) (MeV)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|VL1_HPV37|MAJOR capsid protein L1|Human papillomavirus 37

Query: 2  LPPPPPPAQ 10
          LPP PP A+
Sbjct: 13 LPPTPPVAR 21


>sp|POLG_EC09B|GENOME polyprotein|Echovirus 9 (strain Barty)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1464 PPPPA 1468


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1461 PETPPPP 1467


>sp|NS1_I85A3|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Victoria/1/1985

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 212 PPLPPKQ 218


>sp|GM_HHV8P|ENVELOPE glycoprotein M|Human herpesvirus 8 type P

Query: 4   PPPPPAQ 10
           PPP PA+
Sbjct: 357 PPPLPAK 363


>sp|POLG_HRV8A|GENOME polyprotein|Human rhinovirus A serotype 89

Query: 2    LPPPPPPA 9
            L  PPPPA
Sbjct: 1428 LQSPPPPA 1435


>sp|NS1_I80A2|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Seal/Massachusetts/1/1980

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 212 PPLPPKQ 218


>sp|VL1_HPV15|MAJOR capsid protein L1|Human papillomavirus 15

Query: 2  LPPPPPPAQ 10
          LPP PP A+
Sbjct: 13 LPPTPPVAR 21


>sp|POLG_EC09H|GENOME polyprotein|Echovirus 9 (strain Hill)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1454 PPPPA 1458


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1451 PETPPPP 1457


>sp|POLG_CXB4E|GENOME polyprotein|Coxsackievirus B4 (strain E2) (CVB4)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1444 PPPPA 1448


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1441 PETPPPP 1447


>sp|NS1_I78A3|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Mallard/New

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 212 PPLPPKQ 218


>sp|NS1_I59A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Scotland/1959

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 212 PPLPPKQ 218


>sp|NS1_I18A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Brevig

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 212 PPLPPKQ 218


>sp|POLG_EC01F|GENOME polyprotein|Echovirus 1 (strain Human/Egypt/Farouk/1951) (E-1)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1445 PPPPA 1449


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1442 PETPPPP 1448


>sp|NS1_I78A4|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Mallard/New

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 212 PPLPPKQ 218


>sp|POLG_CXB2O|GENOME polyprotein|Coxsackievirus B2 (strain Ohio-1)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1448 PPPPA 1452


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1445 PETPPPP 1451


>sp|ATI_COWPX|A-TYPE inclusion protein A25 homolog|Cowpox virus (CPV)

Query: 3    PPPPP 7
            PPP P
Sbjct: 1224 PPPKP 1228


Query: 4    PPPPP 8
            PPP P
Sbjct: 1224 PPPKP 1228


>sp|VL1_HPV38|MAJOR capsid protein L1|Human papillomavirus 38

Query: 2  LPPPPPPAQ 10
          LPP PP A+
Sbjct: 13 LPPTPPVAR 21


>sp|VL1_HPV22|MAJOR capsid protein L1|Human papillomavirus 22

Query: 2  LPPPPPPAQ 10
          LPP PP A+
Sbjct: 13 LPPTPPVAR 21


>sp|UL32_HHV6Z|PACKAGING protein UL32 homolog|Human herpesvirus 6B (strain Z29)

Query: 3  PPPPPPAQ 10
          P PP P++
Sbjct: 28 PQPPIPSE 35


>sp|UL32_HHV6U|PACKAGING protein UL32|Human herpesvirus 6A (strain Uganda-1102)

Query: 3  PPPPPPAQ 10
          P PP P++
Sbjct: 28 PQPPIPSE 35


>sp|MCP_HHV6U|MAJOR capsid protein|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   PLPPP 5
           PLPPP
Sbjct: 951 PLPPP 955


>sp|GP_CCHFI|ENVELOPMENT polyprotein|Crimean-Congo hemorrhagic fever virus (strain

Query: 4   PPPPPA 9
           PP PPA
Sbjct: 183 PPTPPA 188


Query: 3   PPPPP 7
           PP PP
Sbjct: 183 PPTPP 187


>sp|PHOSP_MEASC|PHOSPHOPROTEIN virus (strain Ichinose-B95a) (MeV)

Query: 2   LPPPPPPAQ 10
           +PPPP P++
Sbjct: 212 VPPPPNPSR 220


>sp|POLG_EC30B|GENOME polyprotein|Echovirus 30 (strain Bastianni)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1455 PPPPA 1459


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1452 PETPPPP 1458


>sp|POLG_EC11G|GENOME polyprotein|Echovirus 11 (strain Gregory)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1456 PPPPA 1460


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1453 PETPPPP 1459


>sp|POLG_CXB6S|GENOME polyprotein|Coxsackievirus B6 (strain Schmitt)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1445 PPPPA 1449


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1442 PETPPPP 1448


>sp|V_MEASI|NON-STRUCTURAL protein V|Measles virus (strain IP-3-Ca) (MeV)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|MCP_HHV6Z|MAJOR capsid protein|Human herpesvirus 6B (strain Z29)

Query: 1   PLPPP 5
           PLPPP
Sbjct: 951 PLPPP 955


>sp|POLG_CXB1J|GENOME polyprotein|Coxsackievirus B1 (strain Japan)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1443 PPPPA 1447


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1440 PETPPPP 1446


>sp|PHOSP_MEASY|PHOSPHOPROTEIN virus (strain Yamagata-1) (MeV)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|POLG_HRV2|GENOME polyprotein|Human rhinovirus 2 (HRV-2)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1417 PPPPA 1421


Query: 3    PPPP 6
            PPPP
Sbjct: 1417 PPPP 1420


Query: 4    PPPP 7
            PPPP
Sbjct: 1417 PPPP 1420


>sp|POLG_EC12T|GENOME polyprotein|Echovirus 12 (strain Travis)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1454 PPPPA 1458


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1451 PETPPPP 1457


>sp|POLG_DEN2Q|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    LPPPPP 7
            +P PPP
Sbjct: 1482 VPSPPP 1487


Query: 4    PPPPP 8
            P PPP
Sbjct: 1483 PSPPP 1487


>sp|POLG_CXB5P|GENOME polyprotein|Coxsackievirus B5 (strain Peterborough /

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1446 PPPPA 1450


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1443 PDTPPPP 1449


>sp|NS1_I01A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Silky

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 207 PPLPPNQ 213


>sp|POLG_HRV16|GENOME polyprotein|Human rhinovirus 16 (HRV-16)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1420 PPPPA 1424


>sp|POLG_EC05N|GENOME polyprotein|Echovirus 5 (strain Noyce)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1457 PPPPA 1461


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1454 PETPPPP 1460


>sp|POLG_DEN2P|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    LPPPPP 7
            +P PPP
Sbjct: 1482 VPSPPP 1487


Query: 1    PLPPPPPPAQ 10
            P PPP   A+
Sbjct: 1483 PSPPPVGKAE 1492


>sp|POLG_DEN2J|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    LPPPPP 7
            +P PPP
Sbjct: 1482 VPSPPP 1487


Query: 1    PLPPPPPPAQ 10
            P PPP   A+
Sbjct: 1483 PSPPPVGKAE 1492


>sp|POLG_CXB3N|GENOME polyprotein|Coxsackievirus B3 (strain Nancy)

Query: 5    PPPPA 9
            PPPPA
Sbjct: 1446 PPPPA 1450


Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1443 PETPPPP 1449


>sp|VL1_HPV17|MAJOR capsid protein L1|Human papillomavirus 17

Query: 2  LPPPPPPAQ 10
          LPP PP A+
Sbjct: 13 LPPTPPVAR 21


>sp|NS1_I82A8|NON-STRUCTURAL protein 1|Influenza A virus (strain

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 212 PPLPPKQ 218


>sp|NS1_I00A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Duck/Hong

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 207 PPLPPNQ 213


>sp|VSSGP_EBOSU|SUPER small secreted glycoprotein|Sudan ebolavirus (strain

Query: 2   LPPPP 6
           LPPPP
Sbjct: 122 LPPPP 126


>sp|NS1_I01A1|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Hong

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 207 PPLPPNQ 213


>sp|POLG_DEN2N|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    LPPPPP 7
            +P PPP
Sbjct: 1482 VPSPPP 1487


Query: 1    PLPPPPPPAQ 10
            P PPP   A+
Sbjct: 1483 PSPPPVGKAE 1492


>sp|POLG_DEN28|GENOME polyprotein|Dengue virus type 2 (isolate

Query: 2    LPPPPP 7
            +P PPP
Sbjct: 1482 VPSPPP 1487


Query: 1    PLPPPPPPAQ 10
            P PPP   A+
Sbjct: 1483 PSPPPMGKAE 1492


>sp|POLG_DEN27|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    LPPPPP 7
            +P PPP
Sbjct: 1482 VPSPPP 1487


Query: 1    PLPPPPPPAQ 10
            P PPP   A+
Sbjct: 1483 PSPPPMGKAE 1492


>sp|POLG_CXA9|GENOME polyprotein|Coxsackievirus A9 (strain Griggs)

Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1459 PETPPPP 1465


Query: 5    PPPP 8
            PPPP
Sbjct: 1462 PPPP 1465


>sp|POLG_DEN26|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    LPPPPP 7
            +P PPP
Sbjct: 1482 VPSPPP 1487


Query: 1    PLPPPPPPAQ 10
            P PPP   A+
Sbjct: 1483 PSPPPMGKAE 1492


>sp|POLG_CXB3W|GENOME polyprotein|Coxsackievirus B3 (strain Woodruff)

Query: 1    PLPPPPP 7
            P  PPPP
Sbjct: 1443 PETPPPP 1449


Query: 5    PPPP 8
            PPPP
Sbjct: 1446 PPPP 1449


>sp|L_MUMPM|RNA-DIRECTED RNA polymerase L|Mumps virus genotype B (strain

Query: 1   PLPPPPPPAQ 10
           P  PP  P Q
Sbjct: 716 PFNPPSDPTQ 725


Query: 1    PLPPPP 6
            P P PP
Sbjct: 1770 PFPQPP 1775


>sp|L_MUMPJ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype A (strain

Query: 1   PLPPPPPPAQ 10
           P  PP  P Q
Sbjct: 716 PFNPPSDPTQ 725


Query: 1    PLPPPP 6
            P P PP
Sbjct: 1770 PFPQPP 1775


>sp|NS1_I24A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Japan/1924

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 209 PPLPPKQ 215


>sp|L_MUMPZ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype N (strain

Query: 1   PLPPPPPPAQ 10
           P  PP  P Q
Sbjct: 716 PFNPPSDPTQ 725


Query: 1    PLPPPP 6
            P P PP
Sbjct: 1770 PFPQPP 1775


>sp|VL1_HPV23|MAJOR capsid protein L1|Human papillomavirus 23

Query: 2  LPPPPPPAQ 10
          LPP PP A+
Sbjct: 13 LPPTPPVAR 21


>sp|V_MEASW|NON-STRUCTURAL protein V|Measles virus (strain Edmonston-Schwarz vaccine)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|V_MEASE|NON-STRUCTURAL protein V|Measles virus (strain Edmonston) (MeV)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|V_MEASA|NON-STRUCTURAL protein V|Measles virus (strain Edmonston-AIK-C vaccine)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|PHOSP_MEASI|PHOSPHOPROTEIN virus (strain IP-3-Ca) (MeV)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|UL88_HCMVM|PROTEIN UL88|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 4  PPPPPAQ 10
          PPPP A+
Sbjct: 53 PPPPDAE 59


Query: 2  LPPPP 6
          LPPPP
Sbjct: 52 LPPPP 56


Query: 2   LPPPPP 7
           L PPPP
Sbjct: 351 LDPPPP 356


>sp|UL88_HCMVA|PROTEIN UL88|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 4  PPPPPAQ 10
          PPPP A+
Sbjct: 53 PPPPDAE 59


Query: 2  LPPPP 6
          LPPPP
Sbjct: 52 LPPPP 56


Query: 2   LPPPPP 7
           L PPPP
Sbjct: 351 LDPPPP 356


>sp|UL27_HCMVA|PROTEIN UL27|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   PLPPPP 6
           PLPP P
Sbjct: 143 PLPPDP 148


>sp|GO_HHV6U|120 kDa Glycoprotein O|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   PLPPPPP 7
           P P PPP
Sbjct: 292 PTPAPPP 298


>sp|POLG_DEN2T|GENOME polyprotein|Dengue virus type 2 (strain

Query: 2    LPPPPP 7
            +P PPP
Sbjct: 1072 VPSPPP 1077


Query: 1    PLPPPPPPAQ 10
            P PPP   A+
Sbjct: 1073 PSPPPVGKAE 1082


>sp|PHOSP_MEASM|PHOSPHOPROTEIN virus (strain Edmonston-Moraten vaccine)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|PHOSP_MEASF|PHOSPHOPROTEIN virus (strain Edmonston B)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|PHOSP_MEASE|PHOSPHOPROTEIN virus (strain Edmonston) (MeV)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|RIR1_EBVG|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 2   LPPPPPPAQ 10
           LP P  PAQ
Sbjct: 763 LPRPMEPAQ 771


>sp|GO_HHV6G|120 kDa Glycoprotein O|Human herpesvirus 6A (strain GS)

Query: 1   PLPPPPP 7
           P P PPP
Sbjct: 292 PTPEPPP 298


>sp|NS1_I01A3|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Hong

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 207 PPLPPNQ 213


>sp|UL27_HCMVM|PROTEIN UL27|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   PLPPPP 6
           PLPP P
Sbjct: 143 PLPPDP 148


>sp|MATRX_MUMPS|MATRIX protein|Mumps virus (strain SBL) (MuV)

Query: 1  PLPPPP 6
          PLP PP
Sbjct: 9  PLPKPP 14


>sp|MATRX_MUMPJ|MATRIX protein|Mumps virus genotype A (strain

Query: 1  PLPPPP 6
          PLP PP
Sbjct: 9  PLPKPP 14


>sp|NS1_I02A7|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Teal/China/2978.1/2002

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 190 PPLPPNQ 196


>sp|NS1_I01A2|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Chicken/Hong

Query: 4   PPPPPAQ 10
           PP PP Q
Sbjct: 207 PPLPPNQ 213


>sp|MATRX_MUMPM|MATRIX protein|Mumps virus genotype B (strain

Query: 1  PLPPPP 6
          PLP PP
Sbjct: 9  PLPKPP 14


>sp|MATRX_MUMP1|MATRIX protein|Mumps virus (strain SBL-1) (MuV)

Query: 1  PLPPPP 6
          PLP PP
Sbjct: 9  PLPKPP 14


>sp|VSGP_EBOSU|PRE-SMALL/SECRETED glycoprotein|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 2   LPPPP 6
           LPPPP
Sbjct: 122 LPPPP 126


>sp|PHOSP_MEASA|PHOSPHOPROTEIN virus (strain Edmonston-AIK-C vaccine)

Query: 2   LPPPPPPAQ 10
           +PPPP P +
Sbjct: 212 VPPPPDPGR 220


>sp|NRAM_INBLE|NEURAMINIDASE B virus (strain B/Lee/1940)

Query: 2  LPPPPP 7
           PPP P
Sbjct: 73 FPPPEP 78


>sp|RIR1_HHV2H|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Human herpesvirus 2 (strain HG52)

Query: 2   LPPPPPPA 9
           LPP PP A
Sbjct: 394 LPPVPPNA 401


>sp|RIR1_HHV23|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Human herpesvirus 2 (strain 333)

Query: 2   LPPPPPPA 9
           LPP PP A
Sbjct: 396 LPPVPPNA 403


>sp|VSGP_EBOSM|PRE-SMALL/SECRETED glycoprotein|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 2   LPPPP 6
           LPPPP
Sbjct: 122 LPPPP 126


>sp|VSGP_EBOSB|PRE-SMALL/SECRETED glycoprotein|Sudan ebolavirus (strain Boniface-76) (SEBOV)

Query: 2   LPPPP 6
           LPPPP
Sbjct: 122 LPPPP 126


>sp|MATRX_MUMPZ|MATRIX protein|Mumps virus genotype N (strain

Query: 1  PLPPPP 6
          PLP PP
Sbjct: 9  PLPKPP 14


>sp|POL_HTL1C|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 1

Query: 1    PLPPPPPPAQ 10
            PLPPP   AQ
Sbjct: 1062 PLPPPHKSAQ 1071


>sp|POL_HTL1A|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 1

Query: 1    PLPPPPPPAQ 10
            PLPPP   AQ
Sbjct: 1062 PLPPPHKSAQ 1071


>sp|VGP_EBOSM|ENVELOPE glycoprotein|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 2   LPPPP 6
           LPPPP
Sbjct: 122 LPPPP 126


>sp|VGP_EBOSB|ENVELOPE glycoprotein|Sudan ebolavirus (strain Boniface-76) (SEBOV)

Query: 2   LPPPP 6
           LPPPP
Sbjct: 122 LPPPP 126


>sp|POL_HTL1L|GAG-PRO-POL polyprotein|Human T-cell leukemia virus 1

Query: 1    PLPPPPPPAQ 10
            PLPPP   AQ
Sbjct: 1062 PLPPPHKSAQ 1071


>sp|VL1_HPV57|MAJOR capsid protein L1|Human papillomavirus 57

Query: 4   PPPPPA 9
           PPPP A
Sbjct: 418 PPPPSA 423


>sp|VGP_EBOSU|ENVELOPE glycoprotein|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 2   LPPPP 6
           LPPPP
Sbjct: 122 LPPPP 126


>sp|POLG_COSAA|GENOME polyprotein|Cosavirus A (isolate Human/Pakistan/0553/-) (HCoSV-A)

Query: 3   PPPPPPAQ 10
           PP  PP Q
Sbjct: 535 PPSTPPTQ 542


>sp|VE2_HPV08|REGULATORY protein E2|Human papillomavirus type 8

Query: 3   PPPPPPAQ 10
           PP  PP Q
Sbjct: 203 PPGSPPGQ 210


>sp|PP85_HHV6U|PHOSPHOPROTEIN 85|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   PLPPPPPPAQ 10
           P   PP PA+
Sbjct: 578 PTMAPPSPAR 587


>sp|PKG3_ADE05|PACKAGING protein 3|Human adenovirus C serotype 5

Query: 3  PPPPPPA 9
          P PPP A
Sbjct: 27 PSPPPTA 33


>sp|VGP_MABVM|ENVELOPE glycoprotein|Lake Victoria marburgvirus (strain Musoke-80)

Query: 2   LPPPPPPAQ 10
           +PPP P A+
Sbjct: 231 IPPPLPTAR 239


>sp|UNG_HCMVM|URACIL-DNA glycosylase|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 5   PPPPA 9
           PPPP+
Sbjct: 110 PPPPS 114


>sp|UNG_HCMVA|URACIL-DNA glycosylase|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 5   PPPPA 9
           PPPP+
Sbjct: 110 PPPPS 114




75|Sequence|371|380|PPPAQETQEP

>sp|L_MABVR|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ravn-87)

Query: 1    PPPAQETQEP 10
            P P+Q T EP
Sbjct: 1795 PSPSQTTTEP 1804


>sp|RIR2_VARV|RIBONUCLEOSIDE-DIPHOSPHATE reductase small chain|Variola virus

Query: 2   PPAQET 7
           PP++ET
Sbjct: 214 PPSEET 219


>sp|RIR2_VAR67|RIBONUCLEOSIDE-DIPHOSPHATE reductase small chain|Variola virus (isolate Human/India/Ind3/1967)

Query: 2   PPAQET 7
           PP++ET
Sbjct: 214 PPSEET 219


>sp|RIR2_VACCP|RIBONUCLEOSIDE-DIPHOSPHATE reductase small chain|Vaccinia virus (strain L-IVP) (VACV)

Query: 2   PPAQET 7
           PP++ET
Sbjct: 214 PPSEET 219


>sp|RIR2_VACCC|RIBONUCLEOSIDE-DIPHOSPHATE reductase small chain|Vaccinia virus (strain Copenhagen) (VACV)

Query: 2   PPAQET 7
           PP++ET
Sbjct: 214 PPSEET 219


>sp|RIR2_VACCA|RIBONUCLEOSIDE-DIPHOSPHATE reductase small chain|Vaccinia virus (strain Ankara) (VACV)

Query: 2   PPAQET 7
           PP++ET
Sbjct: 214 PPSEET 219


>sp|RIR2_MONPV|RIBONUCLEOSIDE-DIPHOSPHATE reductase small chain|Monkeypox virus (MPXV)

Query: 2   PPAQET 7
           PP++ET
Sbjct: 214 PPSEET 219


>sp|US15_HCMVM|MEMBRANE protein US15|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1  PPPAQETQ 8
          PP  QET+
Sbjct: 19 PPGIQETR 26


>sp|US15_HCMVA|UNCHARACTERIZED protein HVLF3|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1  PPPAQETQ 8
          PP  QET+
Sbjct: 19 PPGIQETR 26


>sp|CAPSD_HASV4|CAPSID polyprotein VP90|Human astrovirus-4 (HAstV-4)

Query: 2   PPAQETQEP 10
           P  QE+QEP
Sbjct: 492 PNLQESQEP 500


>sp|POLN_HEVMG|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 3

Query: 1   PPPAQETQ 8
           PPP++E+Q
Sbjct: 744 PPPSEESQ 751


>sp|CAP6_ADE05|PRE-PROTEIN VI|Human adenovirus C serotype 5

Query: 1   PPPAQETQEP 10
           PPPA   Q+P
Sbjct: 184 PPPADTQQKP 193


>sp|KR2_EBVG|SERINE/THREONINE-PROTEIN kinase BGLF4|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1  PPPAQETQ 8
          P P +ETQ
Sbjct: 24 PEPPRETQ 31


>sp|KR2_EBVB9|SERINE/THREONINE-PROTEIN kinase BGLF4|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1  PPPAQETQ 8
          P P +ETQ
Sbjct: 24 PEPPRETQ 31


>sp|KR2_EBVA8|SERINE/THREONINE-PROTEIN kinase BGLF4|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1  PPPAQETQ 8
          P P +ETQ
Sbjct: 24 PEPPRETQ 31


>sp|CAP6_ADE02|PRE-PROTEIN VI|Human adenovirus C serotype 2

Query: 1   PPPAQETQEP 10
           PPPA   Q+P
Sbjct: 184 PPPADTQQKP 193


>sp|ATI_COWPX|A-TYPE inclusion protein A25 homolog|Cowpox virus (CPV)

Query: 2    PPAQETQEP 10
            PP+ +  EP
Sbjct: 1184 PPSSDVTEP 1192




76|Sequence|376|385|ETQEPSPILD

>sp|DR7_HHV6U|TRANSACTIVATOR protein DR7|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   ETQEPSP 7
           ETQ+PSP
Sbjct: 254 ETQKPSP 260


>sp|DR6_HHV6U|G2/M cell-cycle inhibitor DR6|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   ETQEPSP 7
           ETQ+PSP
Sbjct: 286 ETQKPSP 292


>sp|DR6_HHV6Z|G2/M cell-cycle inhibitor DR6|Human herpesvirus 6B (strain Z29)

Query: 1   ETQEPSP 7
           ETQ PSP
Sbjct: 286 ETQTPSP 292


>sp|MATRX_RABVP|MATRIX protein|Rabies virus (strain Pasteur vaccins

Query: 1  ETQEPSPI 8
          +TQ+PSP+
Sbjct: 15 DTQKPSPV 22


>sp|MATRX_RABVA|MATRIX protein|Rabies virus (strain PM1503/AVO1) (RABV)

Query: 1  ETQEPSPI 8
          +TQ+PSP+
Sbjct: 15 DTQKPSPV 22


>sp|MATRX_RABVE|MATRIX protein|Rabies virus (strain ERA) (RABV)

Query: 1  ETQEPSPI 8
          +TQ+PSP+
Sbjct: 15 DTQKPSPV 22


>sp|MATRX_RABVC|MATRIX protein|Rabies virus (strain CVS-11) (RABV)

Query: 1  ETQEPSPI 8
          +TQ+PSP+
Sbjct: 15 DTQKPSPV 22


>sp|MATRX_RABVD|MATRIX protein|Rabies virus (strain China/DRV) (RABV)

Query: 1  ETQEPSPI 8
          +TQ+PSP+
Sbjct: 15 DTQKPSPV 22


>sp|MATRX_RABVR|MATRIX protein|Rabies virus (strain China/MRV) (RABV)

Query: 1  ETQEPSPI 8
          +TQ+PSP+
Sbjct: 15 DTQKPSPV 22


>sp|POXIN_VACCC|POXIN virus (strain Copenhagen) (VACV)

Query: 2   TQEPSPILD 10
           T  P PI+D
Sbjct: 150 TLSPGPIID 158


>sp|POXIN_VACCA|POXIN virus (strain Ankara) (VACV)

Query: 2   TQEPSPILD 10
           T  P PI+D
Sbjct: 150 TLSPGPIID 158


>sp|UL129_HCMVA|UNCHARACTERIZED protein UL129|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1  ETQEPSPILD 10
          E+Q P  +LD
Sbjct: 29 ESQRPDAVLD 38


>sp|L_RABVS|LARGE structural protein|Rabies virus (strain SAD B19)

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 470 ESMDPSEILD 479


>sp|L_RABVN|LARGE structural protein|Rabies virus (strain Nishigahara RCEH)

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 470 ESMDPSEILD 479


>sp|L_RABVH|LARGE structural protein|Rabies virus (strain HEP-Flury) (RABV)

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 470 ESMDPSEILD 479


>sp|L_RABVE|LARGE structural protein|Rabies virus (strain ERA) (RABV)

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 470 ESMDPSEILD 479


>sp|L_RABVB|LARGE structural protein|Rabies virus (strain silver-haired

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 471 ESMDPSEILD 480


>sp|L_RABVR|LARGE structural protein|Rabies virus (strain China/MRV) (RABV)

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 470 ESMDPSEILD 479


>sp|L_RABVP|LARGE structural protein|Rabies virus (strain Pasteur vaccins

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 470 ESMDPSEILD 479


>sp|L_RABVD|LARGE structural protein|Rabies virus (strain China/DRV) (RABV)

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 470 ESMDPSEILD 479


>sp|L_ABLVH|LARGE structural protein|Australian bat lyssavirus (isolate

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 470 ESMDPSEILD 479


>sp|L_RABVA|LARGE structural protein|Rabies virus (strain PM1503/AVO1) (RABV)

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 470 ESMDPSEILD 479


>sp|L_ABLVB|LARGE structural protein|Australian bat lyssavirus (isolate Bat/AUS/1996)

Query: 1   ETQEPSPILD 10
           E+ +PS ILD
Sbjct: 471 ESMDPSEILD 480


>sp|EBNA2_EBVB9|EPSTEIN-BARR nuclear antigen 2|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2   TQEPSPI 8
           TQEPSP+
Sbjct: 107 TQEPSPL 113


>sp|EBNA2_EBVG|EPSTEIN-BARR nuclear antigen 2|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 2  TQEPSPI 8
          TQEPSP+
Sbjct: 73 TQEPSPL 79


>sp|POLN_EEVVP|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 1   ETQEPSPIL 9
           E +EPSP++
Sbjct: 474 EHKEPSPLI 482


>sp|POLN_EEVV3|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 1   ETQEPSPIL 9
           E +EPSP++
Sbjct: 474 EHKEPSPLI 482


>sp|POLN_EEVVT|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 1   ETQEPSPIL 9
           E +EPSP++
Sbjct: 474 EHKEPSPLI 482


>sp|US14_HCMVA|UNCHARACTERIZED protein HVLF4|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   TQEPSPIL 9
           + +PSP+L
Sbjct: 98  SDDPSPLL 105


>sp|POXIN_MONPZ|POXIN-SCHLAFEN virus (strain Zaire-96-I-16) (MPXV)

Query: 4   EPSPILD 10
           +P PI+D
Sbjct: 150 KPGPIID 156


>sp|POXIN_MONPV|POXIN-SCHLAFEN virus (MPXV)

Query: 4   EPSPILD 10
           +P PI+D
Sbjct: 150 KPGPIID 156


>sp|MATRX_RABVN|MATRIX protein|Rabies virus (strain Nishigahara RCEH)

Query: 1  ETQEPSP 7
          +TQ+PSP
Sbjct: 15 DTQKPSP 21


>sp|MATRX_RABVH|MATRIX protein|Rabies virus (strain HEP-Flury) (RABV)

Query: 1  ETQEPSP 7
          +TQ+PSP
Sbjct: 15 DTQKPSP 21


>sp|POLN_SINDO|POLYPROTEIN P1234|Sindbis virus subtype Ockelbo (strain

Query: 3    QEPSPI 8
            QEP+PI
Sbjct: 1761 QEPAPI 1766


>sp|HBSAG_HBVH1|LARGE envelope protein|Hepatitis B virus genotype H

Query: 1   ETQEPSPIL 9
           ETQ P+P +
Sbjct: 149 ETQNPAPTI 157


>sp|POLN_SINDV|POLYPROTEIN P1234|Sindbis virus (SINV)

Query: 3    QEPSPI 8
            QEP+PI
Sbjct: 1764 QEPAPI 1769


>sp|CAPSD_TTVV6|CAPSID protein|Torque teno virus (isolate Human/China/CT23F/2001)

Query: 1   ETQEPSPILD 10
           E+QE +P+L+
Sbjct: 685 ESQEEAPLLE 694


>sp|POLG_EMCVR|GENOME polyprotein|Encephalomyocarditis virus (strain Rueckert) (EMCV)

Query: 1    ETQEPSPILD 10
            + Q P+P++D
Sbjct: 1625 DIQGPNPVMD 1634


>sp|POLG_EMCVB|GENOME polyprotein|Encephalomyocarditis virus (strain emc-b nondiabetogenic)

Query: 1    ETQEPSPILD 10
            + Q P+P++D
Sbjct: 1625 DIQGPNPVMD 1634


>sp|POLG_EMCVD|GENOME polyprotein|Encephalomyocarditis virus (strain emc-d diabetogenic)

Query: 1    ETQEPSPILD 10
            + Q P+P++D
Sbjct: 1625 DIQGPNPVMD 1634


>sp|POLG_EMCV|GENOME polyprotein|Encephalomyocarditis virus

Query: 1    ETQEPSPILD 10
            + Q P+P++D
Sbjct: 1623 DIQGPNPVMD 1632


>sp|CAPSD_HASV8|CAPSID polyprotein VP90|Human astrovirus-8 (HAstV-8)

Query: 2   TQEPSPI 8
           + EPSPI
Sbjct: 497 SDEPSPI 503


>sp|PRIM_HHV11|DNA primase|Human herpesvirus 1 (strain 17)

Query: 2   TQEPSPI 8
           T++PSP+
Sbjct: 386 TEQPSPL 392


>sp|NS1_HBOC4|INITIATOR protein NS1|Human bocavirus 4 (HBoV4) (Human

Query: 1   ETQEPSP 7
           E+QEP P
Sbjct: 724 ESQEPQP 730


>sp|PRIM_HHV2H|DNA primase|Human herpesvirus 2 (strain HG52)

Query: 2   TQEPSPI 8
           T++PSP+
Sbjct: 389 TEQPSPL 395


>sp|CAPSD_HASV3|CAPSID polyprotein VP90|Human astrovirus-3 (HAstV-3)

Query: 2   TQEPSPI 8
           ++EP+PI
Sbjct: 499 SEEPTPI 505


>sp|POLG_HPE2W|GENOME polyprotein|Human parechovirus 2 (strain Williamson)

Query: 4   EPSPILD 10
           EP P++D
Sbjct: 188 EPKPVVD 194


>sp|POLN_EEEVF|POLYPROTEIN P1234|Eastern equine encephalitis virus (strain

Query: 1    ETQEPSP 7
            ET+ PSP
Sbjct: 1771 ETRAPSP 1777




77|Sequence|381|390|SPILDSEETR

>sp|HN_PI3HA|HEMAGGLUTININ-NEURAMINIDASE parainfluenza 3 virus (strain

Query: 1   SPILDSEETR 10
           S ILDS++TR
Sbjct: 493 SVILDSQKTR 502


>sp|POLG_KOKV|GENOME polyprotein|Kokobera virus (KOKV)

Query: 1    SPILDSEETR 10
            SPI+D EETR
Sbjct: 1823 SPIID-EETR 1831


>sp|VL2_HPV61|MINOR capsid protein L2|Human papillomavirus type 61

Query: 1   SPILDSEET 9
           +PI D EET
Sbjct: 250 NPIFDPEET 258


>sp|POLG_ZIKV|GENOME polyprotein|Zika virus (ZIKV)

Query: 1    SPILDSE 7
            SPI+D+E
Sbjct: 1829 SPIMDTE 1835


>sp|POLG_HRV16|GENOME polyprotein|Human rhinovirus 16 (HRV-16)

Query: 1   SPILDSEET 9
           +P+LD+ ET
Sbjct: 599 APVLDAAET 607


>sp|POLG_ZIKVK|GENOME polyprotein|Zika virus (isolate ZIKV/Human/Cambodia/FSS13025/2010)

Query: 1    SPILDSE 7
            SPI+D+E
Sbjct: 1833 SPIMDTE 1839


>sp|POLG_ZIKVF|GENOME polyprotein|Zika virus (isolate ZIKV/Human/French

Query: 1    SPILDSE 7
            SPI+D+E
Sbjct: 1833 SPIMDTE 1839


>sp|POLG_JAEVM|GENOME polyprotein|Japanese encephalitis virus (strain M28)

Query: 1    SPILDS 6
            SPILDS
Sbjct: 1641 SPILDS 1646


>sp|POLG_JAEVJ|GENOME polyprotein|Japanese encephalitis virus (strain Jaoars982)

Query: 1    SPILDS 6
            SPILDS
Sbjct: 1641 SPILDS 1646


>sp|POLG_JAEV5|GENOME polyprotein|Japanese encephalitis virus (strain SA(v))

Query: 1    SPILDS 6
            SPILDS
Sbjct: 1641 SPILDS 1646


>sp|POLG_JAEV1|GENOME polyprotein|Japanese encephalitis virus (strain SA-14)

Query: 1    SPILDS 6
            SPILDS
Sbjct: 1641 SPILDS 1646


>sp|VL2_HPV62|MINOR capsid protein L2|Human papillomavirus 62

Query: 1   SPILDSEET 9
           +PI D EET
Sbjct: 256 NPIYDPEET 264


>sp|CEP1_HHV6U|CYTOPLASMIC envelopment protein 1|Human herpesvirus 6A (strain Uganda-1102)

Query: 3  ILDSEET 9
          ILDSE+T
Sbjct: 84 ILDSEDT 90


>sp|RIR1_HHV2H|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Human herpesvirus 2 (strain HG52)

Query: 1   SPILDSEET 9
           +P+LDS+ T
Sbjct: 302 APVLDSQPT 310


>sp|RIR1_HHV23|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Human herpesvirus 2 (strain 333)

Query: 1   SPILDSEET 9
           +P+LDS+ T
Sbjct: 304 APVLDSQPT 312


>sp|CEP1_HHV6Z|CYTOPLASMIC envelopment protein 1|Human herpesvirus 6B (strain Z29)

Query: 3  ILDSEET 9
          ILDSE+T
Sbjct: 84 ILDSEDT 90


>sp|POLG_ROCV|GENOME polyprotein|Rocio virus (ROCV)

Query: 1    SPILDSE 7
            SPI+D E
Sbjct: 1828 SPIIDQE 1834


>sp|POLG_TMUV|GENOME polyprotein|Tembusu virus (TMUV)

Query: 1    SPILDSE 7
            SPI+D E
Sbjct: 1635 SPIIDKE 1641


>sp|POLG_HCVBB|GENOME polyprotein|Hepatitis C virus genotype 2c

Query: 2    PILDSEETR 10
            P++D E+ R
Sbjct: 2262 PVVDKEDER 2270


>sp|VL2_HPV27|MINOR capsid protein L2|Human papillomavirus 27

Query: 1   SPILDSEET 9
           +P+ D EET
Sbjct: 253 NPVYDPEET 261


>sp|VL2_HPV57|MINOR capsid protein L2|Human papillomavirus 57

Query: 1   SPILDSEET 9
           +P+ D EET
Sbjct: 254 NPVYDPEET 262


>sp|VL2_HPV2A|MINOR capsid protein L2|Human papillomavirus type 2a

Query: 1   SPILDSEET 9
           +P+ D EET
Sbjct: 254 NPVYDPEET 262




78|Sequence|386|395|SEETRAAAPQ

>sp|K15_HHV8P|PROTEIN K15|Human herpesvirus 8 type P

Query: 1   SEETRAAAPQ 10
           +EE+R  +PQ
Sbjct: 439 AEESREPSPQ 448


>sp|POL_HV1BR|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 462 SEQTRANSP 470


>sp|POL_HV1B5|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 462 SEQTRANSP 470


>sp|POL_HV1ET|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 447 SEQTRANSP 455


>sp|POL_HV1Y2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


>sp|POL_HV1C4|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


>sp|POL_HV1J3|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


>sp|POL_HV1U4|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 444 SEQTRANSP 452


>sp|POL_HV1A2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 452 SEQTRANSP 460


>sp|POL_HV1VI|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 444 SEQTRANSP 452


>sp|POL_HV1OY|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 449 SEQTRANSP 457


>sp|POL_HV1LW|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


>sp|POL_HV1N5|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


>sp|POL_HV1Z2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 452 SEQTRANSP 460


>sp|POL_HV197|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 445 SEQTRANSP 453


>sp|POL_HV196|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 445 SEQTRANSP 453


>sp|POL_HV1MA|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 456 SEQTRANSP 464


>sp|POL_HV1JR|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


>sp|POL_HV1H2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


>sp|POL_HV1RH|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 452 SEQTRANSP 460


>sp|POL_HV1ND|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 448 SEQTRANSP 456


>sp|POL_HV1M2|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 449 SEQTRANSP 457


>sp|POL_HV1B9|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


>sp|POL_HV1MP|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 445 SEQTRANSP 453


>sp|POL_HV1B1|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 450 SEQTRANSP 458


Query: 1   SEETRAAAP 9
           SE+TRA +P
Sbjct: 462 SEQTRANSP 470


>sp|POLN_EEVVP|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 1   SEETRAAAP 9
           +EE RAA P
Sbjct: 503 AEELRAALP 511


>sp|POLN_EEVVT|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 1   SEETRAAAP 9
           +EE RAA P
Sbjct: 503 AEELRAALP 511




79|Sequence|391|400|AAAPQAWAGP

>sp|POLG_DEN4H|GENOME polyprotein|Dengue virus type 4 (strain

Query: 4    PQAWAGP 10
            P+A+AGP
Sbjct: 1018 PKAYAGP 1024


>sp|POLG_DEN4T|GENOME polyprotein|Dengue virus type 4 (strain

Query: 4    PQAWAGP 10
            P+A+AGP
Sbjct: 1018 PKAYAGP 1024


>sp|POLG_DEN4P|GENOME polyprotein|Dengue virus type 4 (strain

Query: 4    PQAWAGP 10
            P+A+AGP
Sbjct: 1018 PKAYAGP 1024


>sp|DPOL_EBVG|DNA polymerase catalytic subunit|Epstein-Barr virus (strain GD1)

Query: 1   AAAPQAWA 8
           A +P AWA
Sbjct: 734 APSPDAWA 741


>sp|DPOL_EBVB9|DNA polymerase catalytic subunit|Epstein-Barr virus (strain B95-8)

Query: 1   AAAPQAWA 8
           A +P AWA
Sbjct: 734 APSPDAWA 741


>sp|DPOL_EBVA8|DNA polymerase catalytic subunit|Epstein-Barr virus (strain AG876)

Query: 1   AAAPQAWA 8
           A +P AWA
Sbjct: 734 APSPDAWA 741


>sp|CAPSD_TTVV9|CAPSID protein|Torque teno virus (isolate Japanese

Query: 4   PQAWAG 9
           P+AW G
Sbjct: 629 PKAWPG 634


>sp|MC148_MCV1|CHEMOKINE-LIKE protein MC148|Molluscum contagiosum virus subtype 1

Query: 4   PQAWAG 9
           PQ W+G
Sbjct: 95  PQIWSG 100


>sp|POL_HV2ST|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 2   AAPQAWAG 9
            +PQ W G
Sbjct: 759 VSPQGWKG 766


>sp|VE1_HPV27|REPLICATION protein E1|Human papillomavirus 27

Query: 2   AAPQAWA 8
           A PQ W+
Sbjct: 518 ATPQCWS 524


>sp|KITH_HHV1|THYMIDINE kinase|Human herpesvirus 1 (HHV-1) (Human

Query: 2   AAPQAWAGP 10
           A PQ+ AGP
Sbjct: 272 AEPQSNAGP 280


>sp|KITH_HHV1K|THYMIDINE kinase|Human herpesvirus 1 (strain KOS)

Query: 2   AAPQAWAGP 10
           A PQ+ AGP
Sbjct: 272 AEPQSNAGP 280


>sp|KITH_HHV1S|THYMIDINE kinase|Human herpesvirus 1 (strain SC16)

Query: 2   AAPQAWAGP 10
           A PQ+ AGP
Sbjct: 272 AEPQSNAGP 280


>sp|KITH_HHV1E|THYMIDINE kinase|Human herpesvirus 1 (strain HFEM)

Query: 2   AAPQAWAGP 10
           A PQ+ AGP
Sbjct: 272 AEPQSNAGP 280


>sp|KITH_HHV11|THYMIDINE kinase|Human herpesvirus 1 (strain 17)

Query: 2   AAPQAWAGP 10
           A PQ+ AGP
Sbjct: 272 AEPQSNAGP 280


>sp|VE1_HPV2A|REPLICATION protein E1|Human papillomavirus type 2a

Query: 2   AAPQAWA 8
           A PQ W+
Sbjct: 518 ATPQCWS 524


>sp|KITH_HHV1C|THYMIDINE kinase|Human herpesvirus 1 (strain CL101)

Query: 2   AAPQAWAGP 10
           A PQ+ AGP
Sbjct: 272 AEPQSNAGP 280




80|Sequence|396|405|AWAGPMEEPP

>sp|BRRF1_EBVG|TRANSCRIPTIONAL activator BRRF1|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 3   AGPMEEP 9
           +GP EEP
Sbjct: 193 SGPSEEP 199


>sp|BRRF1_EBVB9|TRANSCRIPTIONAL activator BRRF1|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 3   AGPMEEP 9
           +GP EEP
Sbjct: 193 SGPSEEP 199


>sp|BRRF1_EBVA8|TRANSCRIPTIONAL activator BRRF1|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 3   AGPMEEP 9
           +GP EEP
Sbjct: 193 SGPSEEP 199


>sp|PRO_ADE04|PROTEASE adenovirus E serotype 4

Query: 1   AWAGPMEEPP 10
           AW  PM++ P
Sbjct: 132 AWPTPMDKNP 141


>sp|PB2_I33A0|POLYMERASE basic protein 2|Influenza A virus (strain A/Wilson-Smith/1933

Query: 3   AGPMEEPP 10
           AGP+ E P
Sbjct: 672 AGPLTEDP 679


>sp|POLG_HCV6A|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 1    AWAGPMEEPP 10
            AW  P  EPP
Sbjct: 2306 AWQMPGYEPP 2315


>sp|POLG_HCVEU|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 1    AWAGPMEEPP 10
            AW  P  EPP
Sbjct: 2305 AWQMPGYEPP 2314


Query: 2    WAGPMEEPP 10
            WA P   PP
Sbjct: 2293 WARPDNNPP 2301


>sp|PA_INCJJ|POLYMERASE acidic protein|Influenza C virus (strain C/JJ/1950)

Query: 4   GPMEE 8
           GPMEE
Sbjct: 144 GPMEE 148


>sp|PA_INCAA|POLYMERASE acidic protein|Influenza C virus (strain C/Ann

Query: 4   GPMEE 8
           GPMEE
Sbjct: 144 GPMEE 148


>sp|PA_INCJH|POLYMERASE acidic protein|Influenza C virus (strain C/Johannesburg/1/1966)

Query: 4   GPMEE 8
           GPMEE
Sbjct: 144 GPMEE 148


>sp|CAPSD_HASV7|CAPSID polyprotein VP90|Human astrovirus-7 (HAstV-7)

Query: 5   PMEEPP 10
           P EEPP
Sbjct: 497 PSEEPP 502


>sp|POLG_HCVTR|GENOME polyprotein|Hepatitis C virus genotype 3b

Query: 1    AWAGPMEEPP 10
            +W  P  EPP
Sbjct: 2308 SWKDPTYEPP 2317


>sp|PHOSP_HENDH|PHOSPHOPROTEIN virus (isolate Horse/Autralia/Hendra/1994)

Query: 5   PMEEPP 10
           P EEPP
Sbjct: 201 PTEEPP 206


>sp|CVC1_HCMVM|CAPSID vertex component 1|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   AGPMEEP 9
           AGP+E P
Sbjct: 263 AGPLEPP 269


>sp|CVC1_HCMVA|CAPSID vertex component 1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   AGPMEEP 9
           AGP+E P
Sbjct: 263 AGPLEPP 269


>sp|POLG_HCVSA|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 2    WAGPMEEPP 10
            WA P  +PP
Sbjct: 2289 WARPGYDPP 2297


>sp|GN_HHV11|ENVELOPE glycoprotein N|Human herpesvirus 1 (strain 17)

Query: 3  AGPMEEPP 10
          AGP  EPP
Sbjct: 25 AGPRGEPP 32


>sp|POLG_HCVJ6|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 1    AWAGPMEEPP 10
            AWA P   PP
Sbjct: 2287 AWARPDYNPP 2296


>sp|VE2_HPV40|REGULATORY protein E2|Human papillomavirus 40

Query: 4   GPMEEPP 10
           GP + PP
Sbjct: 234 GPAQAPP 240


>sp|POLG_HCVJF|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 1    AWAGPMEEPP 10
            AWA P   PP
Sbjct: 2287 AWARPDYNPP 2296


>sp|POLG_HCVVP|GENOME polyprotein|Hepatitis C virus genotype 6h

Query: 2    WAGPMEEPP 10
            WA P   PP
Sbjct: 2290 WATPGYNPP 2298


>sp|DPOL_HBVC0|PROTEIN P|Hepatitis B virus genotype C

Query: 3  AGPMEE 8
          AGP+EE
Sbjct: 18 AGPLEE 23


>sp|GH_HHV2H|ENVELOPE glycoprotein H|Human herpesvirus 2 (strain HG52)

Query: 3   AGPMEEPP 10
           AGP   PP
Sbjct: 129 AGPTSRPP 136




81|Sequence|401|410|MEEPPQAQAP

>sp|VPR_HV1MP|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+PP+ Q P
Sbjct: 1  MEQPPEDQGP 10


>sp|VPR_HV1M2|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+PP+ Q P
Sbjct: 1  MEQPPEDQGP 10


>sp|VL2_HPV60|MINOR capsid protein L2|Human papillomavirus type 60

Query: 1   MEEPPQAQAP 10
           +EEPP+   P
Sbjct: 251 IEEPPRTSTP 260


>sp|PHOSP_NIPAV|PHOSPHOPROTEIN virus

Query: 2   EEPPQAQAP 10
           EEPPQ + P
Sbjct: 318 EEPPQKRLP 326


>sp|VPR_HV1B9|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VE1_HPV40|REPLICATION protein E1|Human papillomavirus 40

Query: 3   EPPQAQAP 10
           +PP+ Q+P
Sbjct: 309 QPPKLQSP 316


>sp|PB2_INBAD|POLYMERASE basic protein 2|Influenza B virus (strain B/Ann

Query: 2   EEPPQA 7
           EEPP+A
Sbjct: 454 EEPPKA 459


>sp|PB2_INBAC|POLYMERASE basic protein 2|Influenza B virus (strain B/Ann

Query: 2   EEPPQA 7
           EEPP+A
Sbjct: 454 EEPPKA 459


>sp|VPR_HV1JR|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV1S3|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPENQGP 10


>sp|VPR_HV1H2|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV1MN|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV1N5|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|POLG_POL2L|GENOME polyprotein|Poliovirus type 2 (strain Lansing)

Query: 4   PPQAQAP 10
           PP A+AP
Sbjct: 476 PPGAEAP 482


>sp|VPR_HV1SC|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV193|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV1Z2|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|POLG_POL2W|GENOME polyprotein|Poliovirus type 2 (strain W-2)

Query: 4   PPQAQAP 10
           PP A+AP
Sbjct: 476 PPGAKAP 482


>sp|VPR_HV1BR|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV197|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|W_NIPAV|PROTEIN W|Nipah virus

Query: 2   EEPPQAQAP 10
           EEPPQ + P
Sbjct: 318 EEPPQKRLP 326


>sp|V_NIPAV|NON-STRUCTURAL protein V|Nipah virus

Query: 2   EEPPQAQAP 10
           EEPPQ + P
Sbjct: 318 EEPPQKRLP 326


>sp|VPR_HV1RH|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV1AN|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPENQGP 10


>sp|VPR_HV192|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|POLG_POL3L|GENOME polyprotein|Poliovirus type 3 (strains P3/Leon/37

Query: 4   PPQAQAP 10
           PP AQ P
Sbjct: 476 PPGAQPP 482


>sp|POLG_POL32|GENOME polyprotein|Poliovirus type 3 (strain 23127)

Query: 4   PPQAQAP 10
           PP AQ P
Sbjct: 476 PPGAQPP 482


>sp|POLG_EC11G|GENOME polyprotein|Echovirus 11 (strain Gregory)

Query: 4   PPQAQAP 10
           PP A AP
Sbjct: 467 PPGANAP 473


>sp|VPR_HV1OY|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV190|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV1B5|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV1Y2|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV1H3|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV1B1|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10


>sp|VPR_HV112|PROTEIN Vpr|Human immunodeficiency virus type 1

Query: 1  MEEPPQAQAP 10
          ME+ P+ Q P
Sbjct: 1  MEQAPEDQGP 10




82|Sequence|406|415|QAQAPPRGPG

>sp|VPR_HV2KR|PROTEIN Vpr|Human immunodeficiency virus type 2

Query: 1  QAQAPPRGPG 10
          + + PPRGPG
Sbjct: 11 EDETPPRGPG 20


>sp|VE2_HPV40|REGULATORY protein E2|Human papillomavirus 40

Query: 2   AQAPPR 7
           AQAPPR
Sbjct: 236 AQAPPR 241


>sp|ENV_HV1KB|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 1   QAQAPPRGP 9
           Q + P RGP
Sbjct: 724 QTRLPARGP 732


>sp|VE1_HPV54|REPLICATION protein E1|Human papillomavirus type 54

Query: 1   QAQAPPRG 8
           +AQ PP G
Sbjct: 130 KAQPPPNG 137


>sp|POLG_WSLV|GENOME polyprotein|Wesselsbron virus (WSLV)

Query: 3    QAPPRGPG 10
            +APP  PG
Sbjct: 2862 KAPPPPPG 2869


>sp|L_EBORR|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Reston-89) (REBOV)

Query: 3   QAPPRGP 9
           + PP GP
Sbjct: 692 EYPPEGP 698


>sp|L_EBORE|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Philippines-96) (REBOV)

Query: 3   QAPPRGP 9
           + PP GP
Sbjct: 692 EYPPEGP 698


>sp|L_EBOZM|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)

Query: 5   PPRGP 9
           PP GP
Sbjct: 694 PPEGP 698


>sp|L_EBOZ5|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)

Query: 5   PPRGP 9
           PP GP
Sbjct: 694 PPEGP 698


>sp|L_EBOSU|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 3   QAPPRGP 9
           + PP GP
Sbjct: 693 EYPPEGP 699


>sp|L_EBOSM|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 3   QAPPRGP 9
           + PP GP
Sbjct: 693 EYPPEGP 699


>sp|CXCL1_HCMVM|CHEMOKINE vCXCL1|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   QAPPRGPG 10
           + P RGPG
Sbjct: 102 RQPERGPG 109


>sp|L_MEASE|RNA-DIRECTED RNA polymerase L|Measles virus (strain Edmonston) (MeV)

Query: 5   PPRGPG 10
           PP+G G
Sbjct: 489 PPKGTG 494


>sp|L_MEASC|RNA-DIRECTED RNA polymerase L|Measles virus (strain Ichinose-B95a) (MeV)

Query: 5   PPRGPG 10
           PP+G G
Sbjct: 489 PPKGTG 494


>sp|L_MEASA|RNA-DIRECTED RNA polymerase L|Measles virus (strain Edmonston-AIK-C vaccine)

Query: 5   PPRGPG 10
           PP+G G
Sbjct: 489 PPKGTG 494


>sp|KBZIP_HHV8P|E3 SUMO-protein ligase K-bZIP|Human herpesvirus 8 type P

Query: 2   AQAPPRGP 9
           +  PPRGP
Sbjct: 109 SHTPPRGP 116


>sp|POLS_EEVV3|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 3  QAPPRGP 9
          +APP GP
Sbjct: 55 EAPPEGP 61


>sp|MCP_HHV2H|MAJOR capsid protein|Human herpesvirus 2 (strain HG52)

Query: 3   QAPPRGPG 10
           + PP GPG
Sbjct: 562 EVPPAGPG 569


>sp|HBZ_HTL1L|HTLV-1 basic zipper factor|Human T-cell leukemia virus 1

Query: 3  QAPPRGP 9
          +APPRG 
Sbjct: 68 EAPPRGE 74


>sp|TRX1_HHV2H|TRIPLEX capsid protein 1|Human herpesvirus 2 (strain HG52)

Query: 1   QAQAPPRG 8
           ++Q PPRG
Sbjct: 331 KSQLPPRG 338


>sp|TRX1_HHV14|TRIPLEX capsid protein 1|Human herpesvirus 1 (strain A44)

Query: 1   QAQAPPRG 8
           ++Q PPRG
Sbjct: 330 KSQLPPRG 337


>sp|TRX1_HHV2G|TRIPLEX capsid protein 1|Human herpesvirus 2 (strain G)

Query: 1   QAQAPPRG 8
           ++Q PPRG
Sbjct: 331 KSQLPPRG 338


>sp|TRX1_HHV11|TRIPLEX capsid protein 1|Human herpesvirus 1 (strain 17)

Query: 1   QAQAPPRG 8
           ++Q PPRG
Sbjct: 330 KSQLPPRG 337


>sp|POLS_EEVVP|STRUCTURAL polyprotein|Venezuelan equine encephalitis virus (strain

Query: 4  APPRGP 9
          APP GP
Sbjct: 56 APPEGP 61


>sp|UL52_HCMVA|PACKAGING protein UL32 homolog|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 5  PPRGP 9
          PP GP
Sbjct: 15 PPHGP 19


>sp|HBZ_HTL1A|HTLV-1 basic zipper factor|Human T-cell leukemia virus 1

Query: 3  QAPPRGP 9
          +APPRG 
Sbjct: 69 KAPPRGE 75


>sp|VPR_HV2ST|PROTEIN Vpr|Human immunodeficiency virus type 2

Query: 1  QAQAPPRGPG 10
          + + PPR PG
Sbjct: 11 EDRTPPREPG 20


>sp|UL52_HCMVM|PACKAGING protein UL32 homolog|Human cytomegalovirus (strain Merlin)

Query: 5  PPRGP 9
          PP GP
Sbjct: 15 PPHGP 19


>sp|VE2_HPV14|REGULATORY protein E2|Human papillomavirus 14

Query: 2   AQAPPRGPG 10
           +  PP  PG
Sbjct: 200 SSTPPESPG 208


>sp|HBZ_HTL1C|HTLV-1 basic zipper factor|Human T-cell leukemia virus 1

Query: 3  QAPPRGP 9
          +APPRG 
Sbjct: 69 KAPPRGE 75


>sp|UL130_HCMVM|ENVELOPE glycoprotein UL130|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 4  APPRGP 9
          +PPR P
Sbjct: 63 SPPRSP 68


>sp|POLG_HE71M|GENOME polyprotein|Human enterovirus 71 (strain 7423/MS/87)

Query: 2   AQAPPRGP 9
           A  PP GP
Sbjct: 457 AYTPPGGP 464




83|Sequence|411|420|PRGPGSPAED

>sp|GB_HCMVT|ENVELOPE glycoprotein B|Human cytomegalovirus (strain Towne) (HHV-5)

Query: 2   RGPGSPAED 10
           +GPG P+ D
Sbjct: 824 KGPGPPSSD 832


>sp|GB_HCMVM|ENVELOPE glycoprotein B|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2   RGPGSPAED 10
           +GPG P+ D
Sbjct: 824 KGPGPPSSD 832


>sp|GB_HCMVA|ENVELOPE glycoprotein B|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   RGPGSPAED 10
           +GPG P+ D
Sbjct: 823 KGPGPPSSD 831


>sp|VE2_HPV25|REGULATORY protein E2|Human papillomavirus 25

Query: 2   RGPGSPA 8
           RGPGSP 
Sbjct: 316 RGPGSPT 322


>sp|POL_HV2G1|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   PRGPGSPAED 10
           PRGP S   D
Sbjct: 447 PRGPSSSGAD 456


>sp|POL_HV2RO|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   PRGPGSPAED 10
           PRGP S   D
Sbjct: 446 PRGPSSAGAD 455


>sp|POLG_MVEV5|GENOME polyprotein|Murray valley encephalitis virus (strain

Query: 1  PRGPGSP 7
          P GPG P
Sbjct: 5  PGGPGKP 11


>sp|PHOSP_MEASI|PHOSPHOPROTEIN virus (strain IP-3-Ca) (MeV)

Query: 1   PRGPGSPA 8
           P GPG+PA
Sbjct: 262 PSGPGAPA 269


>sp|PHOSP_MEASC|PHOSPHOPROTEIN virus (strain Ichinose-B95a) (MeV)

Query: 1   PRGPGSPA 8
           P GPG+PA
Sbjct: 262 PSGPGAPA 269


>sp|PHOSP_MEASY|PHOSPHOPROTEIN virus (strain Yamagata-1) (MeV)

Query: 1   PRGPGSPA 8
           P GPG+PA
Sbjct: 262 PSGPGAPA 269


>sp|PHOSP_MEASM|PHOSPHOPROTEIN virus (strain Edmonston-Moraten vaccine)

Query: 1   PRGPGSPA 8
           P GPG+PA
Sbjct: 262 PSGPGAPA 269


>sp|PHOSP_MEASF|PHOSPHOPROTEIN virus (strain Edmonston B)

Query: 1   PRGPGSPA 8
           P GPG+PA
Sbjct: 262 PSGPGAPA 269


>sp|PHOSP_MEASE|PHOSPHOPROTEIN virus (strain Edmonston) (MeV)

Query: 1   PRGPGSPA 8
           P GPG+PA
Sbjct: 262 PSGPGAPA 269


>sp|PHOSP_MEASA|PHOSPHOPROTEIN virus (strain Edmonston-AIK-C vaccine)

Query: 1   PRGPGSPA 8
           P GPG+PA
Sbjct: 262 PSGPGAPA 269


>sp|POL_HV2D1|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   PRGPGSPAED 10
           PRGP S   D
Sbjct: 445 PRGPSSSGAD 454


>sp|ENV_HV1YF|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   RGPGSPAE 9
           RGP  P E
Sbjct: 704 RGPDRPEE 711


>sp|ENV_HV1YB|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   RGPGSPAE 9
           RGP  P E
Sbjct: 698 RGPDRPEE 705


>sp|ENV_HV1V9|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 2   RGPGSPAE 9
           RGP  P E
Sbjct: 728 RGPDRPRE 735


>sp|UL87_EBVB9|LATE gene expression regulator BcRF1|Epstein-Barr virus (strain B95-8)

Query: 1   PRGPG 5
           PRGPG
Sbjct: 200 PRGPG 204


>sp|VE2_HPV1|REGULATORY protein E2|Human papillomavirus type 1 (Human

Query: 1   PRGPGSPA 8
           PR  G+PA
Sbjct: 205 PRAAGAPA 212


>sp|POLS_JAEV1|STRUCTURAL polyprotein|Japanese encephalitis virus (strain SA-14)

Query: 4    PGSPAED 10
            PGSP+++
Sbjct: 1167 PGSPSQE 1173


>sp|REX_HTL1C|PROTEIN Rex|Human T-cell leukemia virus 1

Query: 2  RGPGSPAED 10
          R PG+P+ D
Sbjct: 72 RSPGTPSMD 80


>sp|REX_HTL1A|PROTEIN Rex|Human T-cell leukemia virus 1

Query: 2  RGPGSPAED 10
          R PG+P+ D
Sbjct: 72 RSPGTPSMD 80


>sp|REX_HTL1F|PROTEIN Rex|Human T-cell leukemia virus 1

Query: 2  RGPGSPAED 10
          R PG+P+ D
Sbjct: 72 RSPGTPSMD 80


>sp|TRM1_HHV2H|TRIPARTITE terminase subunit 1|Human herpesvirus 2 (strain HG52)

Query: 2   RGPGSPAED 10
           RG G+PA +
Sbjct: 461 RGAGTPASE 469


>sp|NCAP_PUUMS|NUCLEOPROTEIN virus (strain Sotkamo/V-2969/81)

Query: 4   PGSPAED 10
           PG+PA++
Sbjct: 253 PGTPAQE 259


>sp|NCAP_PUUMU|NUCLEOPROTEIN virus (strain Udmurtia/894CG/91)

Query: 4   PGSPAED 10
           PG+PA++
Sbjct: 253 PGTPAQE 259


>sp|NCAP_PUUMP|NUCLEOPROTEIN virus (strain P360)

Query: 4   PGSPAED 10
           PG+PA++
Sbjct: 253 PGTPAQE 259


>sp|NCAP_PUUMK|NUCLEOPROTEIN virus (strain K27)

Query: 4   PGSPAED 10
           PG+PA++
Sbjct: 253 PGTPAQE 259


>sp|NCAP_PUUMB|NUCLEOPROTEIN virus (strain Berkel)

Query: 4   PGSPAED 10
           PG+PA++
Sbjct: 210 PGTPAQE 216


>sp|NCAP_PUUME|NUCLEOPROTEIN virus (strain Evo/12CG/93)

Query: 4   PGSPAED 10
           PG+PA++
Sbjct: 253 PGTPAQE 259


>sp|NCAP_PUUMG|NUCLEOPROTEIN virus (strain Bank vole/Russia/CG1820/1984)

Query: 4   PGSPAED 10
           PG+PA++
Sbjct: 253 PGTPAQE 259


>sp|UL13_HHV2H|SERINE/THREONINE-PROTEIN kinase UL13|Human herpesvirus 2 (strain HG52)

Query: 1   PRGPGSPA 8
           PRG G PA
Sbjct: 328 PRGFGMPA 335


>sp|POL_HV2CA|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   PRGPGS 6
           PRGP S
Sbjct: 446 PRGPSS 451


>sp|PHOSP_RABVH|PHOSPHOPROTEIN virus (strain HEP-Flury) (RABV)

Query: 1   PRGPGSPAED 10
           P  PG  +ED
Sbjct: 134 PNPPGRSSED 143


>sp|DPOL_ADE12|DNA polymerase|Human adenovirus A serotype 12

Query: 1  PRGPGSPAED 10
          P G G+ AE+
Sbjct: 47 PNGSGNAAEE 56


>sp|NS1_I54A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Leningrad/1/1954

Query: 1   PRGPGSPAED 10
           P  PG  AED
Sbjct: 164 PSLPGHTAED 173


>sp|NS1_I34A1|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Puerto

Query: 1   PRGPGSPAED 10
           P  PG  AED
Sbjct: 164 PSLPGHTAED 173


>sp|NS1_I06A0|NON-STRUCTURAL protein 1|Influenza A virus (strain A/Russia:St.Petersburg/8/2006

Query: 1   PRGPGSPAED 10
           P  PG  AED
Sbjct: 164 PSLPGHTAED 173


>sp|NS1_I000X|NON-STRUCTURAL protein 1|Influenza A virus (strain A/X-31

Query: 1   PRGPGSPAED 10
           P  PG  AED
Sbjct: 164 PSLPGHTAED 173




84|Sequence|416|425|SPAEDLMFME

>sp|PRIM_HHV6Z|DNA primase|Human herpesvirus 6B (strain Z29)

Query: 2   PAEDLMFME 10
           P E+L FM+
Sbjct: 702 PKENLSFMD 710


Query: 1  SPAEDLMF 8
          SP+E L+F
Sbjct: 23 SPSEHLIF 30


>sp|PRIM_HHV6U|DNA primase|Human herpesvirus 6A (strain Uganda-1102)

Query: 2   PAEDLMFME 10
           P E+L FM+
Sbjct: 702 PKENLSFMD 710


Query: 1  SPAEDLMF 8
          SP+E L+F
Sbjct: 23 SPSEHLIF 30


>sp|ICP27_EBVB9|MRNA export factor ICP27 homolog|Epstein-Barr virus (strain B95-8)

Query: 1   SPAEDLMF 8
           +PAED++ 
Sbjct: 327 APAEDILL 334


>sp|ICP27_EBVA8|MRNA export factor ICP27 homolog|Epstein-Barr virus (strain AG876)

Query: 1   SPAEDLMF 8
           +PAED++ 
Sbjct: 327 APAEDILL 334


>sp|ICP27_EBVG|MRNA export factor ICP27 homolog|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   SPAEDLMF 8
           +PAED++ 
Sbjct: 327 APAEDILL 334




85|Sequence|421|430|LMFMESAEQA

 ***** No hits found ******


86|Sequence|426|435|SAEQAVLAAP

 ***** No hits found ******


87|Sequence|431|440|VLAAPVEPAT

>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related coronavirus

Query: 1    VLAAPVEPAT 10
            V + PVEP T
Sbjct: 1963 VESTPVEPPT 1972


>sp|R1A_MERS1|REPLICASE polyprotein 1a|Middle East respiratory syndrome-related coronavirus

Query: 1    VLAAPVEPAT 10
            V + PVEP T
Sbjct: 1963 VESTPVEPPT 1972


>sp|LTP_VZVD|LARGE tegument protein deneddylase|Varicella-zoster virus (strain Dumas)

Query: 3    AAPVEPAT 10
            A P+EP T
Sbjct: 2477 AQPIEPGT 2484


>sp|LTP_VZVO|LARGE tegument protein deneddylase|Varicella-zoster virus (strain Oka

Query: 3    AAPVEPAT 10
            A P+EP T
Sbjct: 2477 AQPIEPGT 2484


>sp|MATRX_MEASU|MATRIX protein|Measles virus (strain Hu2) (MeV)

Query: 4  APVEPAT 10
          AP++P T
Sbjct: 19 APIQPTT 25


>sp|MATRX_MEASE|MATRIX protein|Measles virus (strain Edmonston) (MeV)

Query: 4  APVEPAT 10
          AP++P T
Sbjct: 19 APIQPTT 25


>sp|MATRX_MEASA|MATRIX protein|Measles virus (strain Edmonston-AIK-C vaccine)

Query: 4  APVEPAT 10
          AP++P T
Sbjct: 19 APIQPTT 25


>sp|MATRX_MEASC|MATRIX protein|Measles virus (strain Ichinose-B95a) (MeV)

Query: 4  APVEPAT 10
          AP++P T
Sbjct: 19 APIQPTT 25


>sp|MATRX_MEASH|MATRIX protein|Measles virus (strain Halle) (MeV)

Query: 4  APVEPAT 10
          AP++P T
Sbjct: 19 APIQPTT 25


>sp|MATRX_MEASI|MATRIX protein|Measles virus (strain IP-3-Ca) (MeV)

Query: 4  APVEPAT 10
          AP++P T
Sbjct: 19 APIQPTT 25


>sp|PRIM_HHV8P|DNA primase|Human herpesvirus 8 type P

Query: 2   LAAPVEPAT 10
           L  PV+P T
Sbjct: 533 LLGPVDPRT 541


>sp|GB_HHV1K|ENVELOPE glycoprotein B|Human herpesvirus 1 (strain KOS)

Query: 3  AAPVEPAT 10
          AAP  P T
Sbjct: 30 AAPTSPGT 37




88|Sequence|436|445|VEPATADATE

>sp|ORF49_HHV8P|PROTEIN ORF49|Human herpesvirus 8 type P

Query: 2   EPATADATE 10
           EP TAD TE
Sbjct: 138 EPPTADCTE 146


>sp|PG122_MONPV|MRNA-DECAPPING protein OPG122|Monkeypox virus (MPXV)

Query: 1   VEPATAD 7
           ++PATAD
Sbjct: 109 LDPATAD 115


>sp|MCE_VACCC|CAP-SPECIFIC mRNA (nucleoside-2'-O-)-methyltransferase|Vaccinia virus (strain

Query: 2   EPATAD 7
           EP+TAD
Sbjct: 147 EPSTAD 152


>sp|MCE_VACCA|CAP-SPECIFIC mRNA (nucleoside-2'-O-)-methyltransferase|Vaccinia virus (strain

Query: 2   EPATAD 7
           EP+TAD
Sbjct: 147 EPSTAD 152


>sp|MCE_MONPV|CAP-SPECIFIC mRNA (nucleoside-2'-O-)-methyltransferase|Monkeypox virus (MPXV)

Query: 2   EPATAD 7
           EP+TAD
Sbjct: 147 EPSTAD 152


>sp|GP_HTRV|ENVELOPMENT polyprotein|Heartland virus (HTRV)

Query: 1   VEPATADATE 10
           +EP T  AT+
Sbjct: 750 LEPVTGQATQ 759




89|Sequence|441|450|ADATEIHDAA

>sp|VE2_HPV07|REGULATORY protein E2|Human papillomavirus 7

Query: 2   DATEIHDA 9
           DAT++HDA
Sbjct: 220 DATKVHDA 227


>sp|NSP1_ROTWI|NON-STRUCTURAL protein 1|Rotavirus A (isolate RVA/Human/United

Query: 1   ADATEIHD 8
           A ATE+H+
Sbjct: 313 ASATEVHN 320


>sp|LTP_HHV6Z|LARGE tegument protein deneddylase|Human herpesvirus 6B (strain Z29)

Query: 3   ATEIHD 8
           +TEIHD
Sbjct: 233 STEIHD 238


>sp|VP8_CTFVL|UNCHARACTERIZED protein VP8|Colorado tick fever virus (strain

Query: 2  DATEIHDAA 10
          D T++HD A
Sbjct: 89 DVTKLHDLA 97


>sp|MATRX_MEASI|MATRIX protein|Measles virus (strain IP-3-Ca) (MeV)

Query: 4 TEIHD 8
         TEIHD
Sbjct: 2 TEIHD 6


>sp|L_MEASE|RNA-DIRECTED RNA polymerase L|Measles virus (strain Edmonston) (MeV)

Query: 4   TEIHD 8
           TEIHD
Sbjct: 310 TEIHD 314


>sp|L_MEASC|RNA-DIRECTED RNA polymerase L|Measles virus (strain Ichinose-B95a) (MeV)

Query: 4   TEIHD 8
           TEIHD
Sbjct: 310 TEIHD 314


>sp|L_MEASA|RNA-DIRECTED RNA polymerase L|Measles virus (strain Edmonston-AIK-C vaccine)

Query: 4   TEIHD 8
           TEIHD
Sbjct: 310 TEIHD 314


>sp|PRIM_VZVO|DNA primase|Varicella-zoster virus (strain Oka vaccine)

Query: 2   DATEIH 7
           D TEIH
Sbjct: 323 DTTEIH 328


>sp|PRIM_VZVD|DNA primase|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2   DATEIH 7
           D TEIH
Sbjct: 323 DTTEIH 328


>sp|KITH_HHV8P|THYMIDINE kinase|Human herpesvirus 8 type P

Query: 1   ADATEIHD 8
           ADA + HD
Sbjct: 528 ADADKFHD 535


>sp|ENV_HV1OY|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 1  ADATEIHD 8
          A ATE+H+
Sbjct: 59 AYATEVHN 66


>sp|GB_EBVB9|ENVELOPE glycoprotein B|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   ADATEIHDA 9
           A  TE++DA
Sbjct: 182 ASQTELYDA 190


>sp|GB_EBVG|ENVELOPE glycoprotein B|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   ADATEIHDA 9
           A  TE++DA
Sbjct: 182 ASQTELYDA 190


>sp|GB_EBVA8|ENVELOPE glycoprotein B|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   ADATEIHDA 9
           A  TE++DA
Sbjct: 182 ASQTELYDA 190




90|Sequence|446|455|IHDAADTIET

>sp|GK_HHV1R|ENVELOPE glycoprotein K|Human herpesvirus 1 (strain R15)

Query: 1   IHDAADTIET 10
           +H+A + +ET
Sbjct: 108 VHEAVNCLET 117


>sp|GK_HHV1M|ENVELOPE glycoprotein K|Human herpesvirus 1 (strain MP)

Query: 1   IHDAADTIET 10
           +H+A + +ET
Sbjct: 108 VHEAVNCLET 117


>sp|GK_HHV1K|ENVELOPE glycoprotein K|Human herpesvirus 1 (strain KOS)

Query: 1   IHDAADTIET 10
           +H+A + +ET
Sbjct: 108 VHEAVNCLET 117


>sp|GK_HHV19|ENVELOPE glycoprotein K|Human herpesvirus 1 (strain R19)

Query: 1   IHDAADTIET 10
           +H+A + +ET
Sbjct: 108 VHEAVNCLET 117


>sp|GK_HHV11|ENVELOPE glycoprotein K|Human herpesvirus 1 (strain 17)

Query: 1   IHDAADTIET 10
           +H+A + +ET
Sbjct: 108 VHEAVNCLET 117


>sp|NCAP_EBOSU|NUCLEOPROTEIN ebolavirus (strain Human/Uganda/Gulu/2000) (SEBOV)

Query: 2   HDAADTI 8
           HDA DT+
Sbjct: 225 HDANDTV 231


>sp|L_LASSJ|RNA-DIRECTED RNA polymerase L|Lassa virus (strain Mouse/Sierra Leone/Josiah/1976)

Query: 2    HDAADTIET 10
            H  A+TI+T
Sbjct: 1414 HQLAETIDT 1422


>sp|LTP_HCMVT|LARGE tegument protein deneddylase|Human cytomegalovirus (strain Towne)

Query: 1   IHDAADTIET 10
           IHD    IET
Sbjct: 726 IHDLLHVIET 735


>sp|LTP_HCMVM|LARGE tegument protein deneddylase|Human cytomegalovirus (strain Merlin)

Query: 1   IHDAADTIET 10
           IHD    IET
Sbjct: 725 IHDLLHVIET 734


>sp|LTP_HCMVA|LARGE tegument protein deneddylase|Human cytomegalovirus (strain AD169)

Query: 1   IHDAADTIET 10
           IHD    IET
Sbjct: 725 IHDLLHVIET 734


>sp|L_LASV|RNA-DIRECTED RNA polymerase L|Mammarenavirus lassaense

Query: 2    HDAADTIET 10
            H  A+TI+T
Sbjct: 1417 HQLAETIDT 1425


>sp|NCAP_EBOSB|NUCLEOPROTEIN ebolavirus (strain Boniface-76) (SEBOV)

Query: 2   HDAADTI 8
           HDA DT+
Sbjct: 225 HDANDTV 231


>sp|SPIKE_CVH22|SPIKE glycoprotein|Human coronavirus 229E (HCoV-229E)

Query: 1   IHDAADTIE 9
           I+D  DTI+
Sbjct: 865 IYDRLDTIQ 873




91|Sequence|451|460|DTIETDTATA

>sp|VE6_HPV57|PROTEIN E6|Human papillomavirus 57

Query: 1  DTIETDTA 8
          DT+ET+T 
Sbjct: 85 DTVETETG 92


>sp|VE6_HPV2A|PROTEIN E6|Human papillomavirus type 2a

Query: 1  DTIETDTA 8
          DT+ET+T 
Sbjct: 85 DTVETETG 92


>sp|VE6_HPV27|PROTEIN E6|Human papillomavirus 27

Query: 1  DTIETDTA 8
          DT+ET+T 
Sbjct: 91 DTVETETG 98


>sp|CEP1_HHV8P|CYTOPLASMIC envelopment protein 1|Human herpesvirus 8 type P

Query: 3   IETDTATA 10
           IET TATA
Sbjct: 169 IETLTATA 176




92|Sequence|456|465|DTATADTTVA

 ***** No hits found ******


93|Sequence|461|470|DTTVANNVPP

>sp|PHOSP_PI2H|PHOSPHOPROTEIN parainfluenza 2 virus (HPIV-2)

Query: 3  TVANNVPP 10
          T+A+N+PP
Sbjct: 81 TIADNIPP 88


>sp|PHOSP_PI2HT|PHOSPHOPROTEIN parainfluenza 2 virus (strain

Query: 3  TVANNVPP 10
          T+A+N+PP
Sbjct: 81 TIADNIPP 88


>sp|L_LASV|RNA-DIRECTED RNA polymerase L|Mammarenavirus lassaense

Query: 1    DTTVANNVP 9
            D +VAN VP
Sbjct: 1428 DQSVANGVP 1436


>sp|L_LASSJ|RNA-DIRECTED RNA polymerase L|Lassa virus (strain Mouse/Sierra Leone/Josiah/1976)

Query: 1    DTTVANNVP 9
            D +VAN VP
Sbjct: 1425 DQSVANGVP 1433


>sp|V_PI2HT|NON-STRUCTURAL protein V|Human parainfluenza 2 virus (strain

Query: 3  TVANNVPP 10
          T+A+N+PP
Sbjct: 81 TIADNIPP 88


>sp|V_PI2H|NON-STRUCTURAL protein V|Human parainfluenza 2 virus (HPIV-2)

Query: 3  TVANNVPP 10
          T+A+N+PP
Sbjct: 81 TIADNIPP 88


>sp|UL87_HHV6U|PROTEIN U58|Human herpesvirus 6A (strain Uganda-1102)

Query: 2   TTVANNVP 9
           T +ANNVP
Sbjct: 693 TRLANNVP 700


>sp|UL87_HHV6Z|PROTEIN U58|Human herpesvirus 6B (strain Z29)

Query: 2   TTVANNVP 9
           T +ANNVP
Sbjct: 693 TRLANNVP 700


>sp|L_LYCVA|RNA-DIRECTED RNA polymerase L|Lymphocytic choriomeningitis virus (strain

Query: 1    DTTVANNVP 9
            D  +AN VP
Sbjct: 1415 DQAIANGVP 1423


>sp|VL2_HPV63|MINOR capsid protein L2|Human papillomavirus type 63

Query: 4  VANNVPP 10
          VANN PP
Sbjct: 20 VANNCPP 26


>sp|UL87_HHV7J|PROTEIN U58|Human herpesvirus 7 (strain JI)

Query: 2   TTVANNVP 9
           + +ANNVP
Sbjct: 684 SRLANNVP 691


>sp|UL87_HCMVA|PROTEIN UL87|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   TTVANNVP 9
           + +ANNVP
Sbjct: 817 SRLANNVP 824


>sp|VP4_ROTJ1|OUTER capsid protein VP4|Rotavirus X (strain

Query: 2   TTVANNVPP 10
           T +AN+ PP
Sbjct: 678 TRIANSTPP 686


>sp|UL87_HCMVM|UNCHARACTERIZED protein UL87|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2   TTVANNVP 9
           + +ANNVP
Sbjct: 817 SRLANNVP 824


>sp|VP4_ROTB2|OUTER capsid protein VP4|Rotavirus X (isolate

Query: 2   TTVANNVPP 10
           T +AN+ PP
Sbjct: 681 TRIANSTPP 689


>sp|CAPSP_ADE02|PENTON protein|Human adenovirus C serotype 2

Query: 2   TTVANNVP 9
           TTV+ NVP
Sbjct: 514 TTVSENVP 521


>sp|CAPSP_ADE05|PENTON protein|Human adenovirus C serotype 5

Query: 2   TTVANNVP 9
           TTV+ NVP
Sbjct: 514 TTVSENVP 521


>sp|CAPSP_ADE12|PENTON protein|Human adenovirus A serotype 12

Query: 2   TTVANNVP 9
           TTV+ NVP
Sbjct: 440 TTVSENVP 447


>sp|ICP22_HHV2|E3 ubiquitin ligase ICP22|Human herpesvirus 2 (HHV-2) (Human

Query: 1  DTTVANNVPP 10
          DTT AN+ PP
Sbjct: 12 DTTPANHAPP 21


>sp|CEP1_HHV11|CYTOPLASMIC envelopment protein 1|Human herpesvirus 1 (strain 17)

Query: 4   VANNVPP 10
           +ANN PP
Sbjct: 221 LANNPPP 227


>sp|VP6_ROTHG|INTERMEDIATE capsid protein VP6|Rotavirus C (isolate RVC/Human/United

Query: 1   DTTVANNVP 9
           D+T+A N P
Sbjct: 194 DSTLAENAP 202


>sp|VP6_ROTHF|INTERMEDIATE capsid protein VP6|Rotavirus C (isolate

Query: 1   DTTVANNVP 9
           D+T+A N P
Sbjct: 194 DSTLAENAP 202


>sp|VP6_ROTHC|INTERMEDIATE capsid protein VP6|Rotavirus C (isolate RVC/Human/United

Query: 1   DTTVANNVP 9
           D+T+A N P
Sbjct: 194 DSTLAENAP 202


>sp|CEP1_HHV2H|CYTOPLASMIC envelopment protein 1|Human herpesvirus 2 (strain HG52)

Query: 4   VANNVPP 10
           +ANN PP
Sbjct: 221 LANNPPP 227


>sp|ICP22_HHV2H|E3 ubiquitin ligase ICP22|Human herpesvirus 2 (strain HG52)

Query: 1  DTTVANNVPP 10
          +TT AN+ PP
Sbjct: 12 NTTPANHAPP 21




94|Sequence|466|475|NNVPPAATSL

>sp|POLG_HE71|GENOME polyprotein|Human enterovirus 71 (EV71) (EV-71)

Query: 1   NNVPPAATSL 10
           NNVP  ATSL
Sbjct: 379 NNVPTNATSL 388


>sp|POLG_HE71M|GENOME polyprotein|Human enterovirus 71 (strain 7423/MS/87)

Query: 1   NNVPPAATSL 10
           NNVP  ATSL
Sbjct: 379 NNVPTNATSL 388


>sp|POLG_HE71B|GENOME polyprotein|Human enterovirus 71 (strain USA/BrCr/1970)

Query: 1   NNVPPAATSL 10
           NNVP  ATSL
Sbjct: 379 NNVPTNATSL 388


>sp|VL1_HPV30|MAJOR capsid protein L1|Human papillomavirus 30

Query: 4   PPAATSL 10
           PPAATSL
Sbjct: 414 PPAATSL 420


>sp|POLG_TBEVS|GENOME polyprotein|Tick-borne encephalitis virus Far Eastern

Query: 2    NVPPAAT 8
            N+PPA T
Sbjct: 1667 NLPPAVT 1673


>sp|VE2_HPV23|REGULATORY protein E2|Human papillomavirus 23

Query: 3  VPPAATS 9
          VPP ATS
Sbjct: 59 VPPLATS 65


>sp|VE2_HPV24|REGULATORY protein E2|Human papillomavirus 24

Query: 3  VPPAATS 9
          VPP ATS
Sbjct: 59 VPPLATS 65


>sp|L_UUKS|RNA-DIRECTED RNA polymerase L|Uukuniemi virus (strain S23) (UUKV)

Query: 2  NVPPAAT 8
          N PPA T
Sbjct: 16 NCPPAVT 22


>sp|VE2_HPV09|REGULATORY protein E2|Human papillomavirus 9

Query: 3  VPPAATS 9
          VPP ATS
Sbjct: 59 VPPLATS 65


>sp|VE2_HPV37|REGULATORY protein E2|Human papillomavirus 37

Query: 3  VPPAATS 9
          VPP ATS
Sbjct: 59 VPPLATS 65


>sp|VL1_HPV56|MAJOR capsid protein L1|Human papillomavirus 56

Query: 4   PPAATSL 10
           PP ATSL
Sbjct: 441 PPVATSL 447


>sp|VL1_HPV53|MAJOR capsid protein L1|Human papillomavirus type 53

Query: 4   PPAATSL 10
           PP ATSL
Sbjct: 405 PPVATSL 411


>sp|VL1_HPV66|MAJOR capsid protein L1|Human papillomavirus 66

Query: 4   PPAATSL 10
           PP ATSL
Sbjct: 406 PPVATSL 412


>sp|VE2_HPV17|REGULATORY protein E2|Human papillomavirus 17

Query: 3  VPPAATS 9
          VPP ATS
Sbjct: 59 VPPLATS 65


>sp|VL1_HPV61|MAJOR capsid protein L1|Human papillomavirus type 61

Query: 3   VPPAATSL 10
           VPP +TSL
Sbjct: 408 VPPPSTSL 415


>sp|L_PI2HT|RNA-DIRECTED RNA polymerase L|Human parainfluenza 2 virus (strain

Query: 4   PPAAT 8
           PPAAT
Sbjct: 718 PPAAT 722




95|Sequence|471|480|AATSLIDLWP

>sp|L_CHAV|RNA-DIRECTED RNA polymerase L|Chandipura virus (strain I653514) (CHPV)

Query: 3    TSLIDLW 9
            T +IDLW
Sbjct: 2060 TGIIDLW 2066


>sp|POLG_LANVT|GENOME polyprotein|Langat virus (strain TP21)

Query: 2    ATSLIDLW 9
            ATSLI LW
Sbjct: 2198 ATSLIFLW 2205


>sp|VP4_ROTGA|OUTER capsid protein VP4|Rotavirus B (isolate RVB/Human/China/ADRV/1982)

Query: 1   AATSLID 7
           AATS+ID
Sbjct: 554 AATSIID 560


>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)

Query: 4    SLIDLW 9
            SL+D+W
Sbjct: 2108 SLVDVW 2113


>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)

Query: 4    SLIDLW 9
            SL+D+W
Sbjct: 2128 SLVDVW 2133


>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)

Query: 4    SLIDLW 9
            SL+D+W
Sbjct: 2158 SLVDVW 2163


>sp|R1A_CVHN5|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N5)

Query: 4    SLIDLW 9
            SL+D+W
Sbjct: 2108 SLVDVW 2113


>sp|R1A_CVHN1|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N1)

Query: 4    SLIDLW 9
            SL+D+W
Sbjct: 2158 SLVDVW 2163


>sp|R1A_CVHN2|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N2)

Query: 4    SLIDLW 9
            SL+D+W
Sbjct: 2128 SLVDVW 2133


>sp|HEMA_MEASY|HEMAGGLUTININ glycoprotein|Measles virus (strain Yamagata-1) (MeV)

Query: 2   ATSLIDLW 9
           +TSL+DL+
Sbjct: 202 STSLLDLY 209


>sp|US03_HHV2H|SERINE/THREONINE-PROTEIN kinase US3|Human herpesvirus 2 (strain HG52)

Query: 3   TSLIDLW 9
           T +ID+W
Sbjct: 360 TQVIDIW 366




96|Sequence|476|485|IDLWPGNGEG

>sp|ORF2_TTVA1|UNCHARACTERIZED ORF2 protein|Torque teno virus 1 (isolate

Query: 4  WPGNGEG 10
          WPG G+G
Sbjct: 42 WPGYGQG 48


>sp|L_PI2HT|RNA-DIRECTED RNA polymerase L|Human parainfluenza 2 virus (strain

Query: 1    IDLWPGNG 8
            + LW GNG
Sbjct: 1880 VPLWNGNG 1887


>sp|POLG_HAVNO|GENOME polyprotein|Human hepatitis A virus genotype

Query: 4    WPGNGEG 10
            W G GEG
Sbjct: 1680 WRGKGEG 1686


>sp|POLG_HAVMB|GENOME polyprotein|Human hepatitis A virus genotype

Query: 4    WPGNGEG 10
            W G GEG
Sbjct: 1680 WRGKGEG 1686


>sp|POLG_HAVLA|GENOME polyprotein|Human hepatitis A virus genotype

Query: 4    WPGNGEG 10
            W G GEG
Sbjct: 1680 WRGKGEG 1686


>sp|POLG_HAVJ8|GENOME polyprotein|Human hepatitis A virus genotype

Query: 4    WPGNGEG 10
            W G GEG
Sbjct: 1680 WRGKGEG 1686


>sp|POLG_HAVHM|GENOME polyprotein|Human hepatitis A virus genotype

Query: 4    WPGNGEG 10
            W G GEG
Sbjct: 1680 WRGKGEG 1686


>sp|POLG_HAVHA|GENOME polyprotein|Human hepatitis A virus genotype

Query: 4    WPGNGEG 10
            W G GEG
Sbjct: 1514 WRGKGEG 1520


>sp|POLG_HAVH2|GENOME polyprotein|Human hepatitis A virus genotype

Query: 4    WPGNGEG 10
            W G GEG
Sbjct: 1680 WRGKGEG 1686


>sp|POLG_HAVGB|GENOME polyprotein|Human hepatitis A virus genotype

Query: 4    WPGNGEG 10
            W G GEG
Sbjct: 1680 WRGKGEG 1686


>sp|POLG_HAVCF|GENOME polyprotein|Human hepatitis A virus genotype

Query: 4    WPGNGEG 10
            W G GEG
Sbjct: 1678 WRGKGEG 1684


>sp|POLG_HAV88|GENOME polyprotein|Human hepatitis A virus genotype

Query: 4    WPGNGEG 10
            W G GEG
Sbjct: 1680 WRGKGEG 1686


>sp|HEMA_I73A5|HEMAGGLUTININ A virus (strain A/Port

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I89A2|HEMAGGLUTININ A virus (strain A/Beijing/353/1989

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I72A4|HEMAGGLUTININ A virus (strain A/Memphis/101/1972

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I72A3|HEMAGGLUTININ A virus (strain A/Memphis/102/1972

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I83A8|HEMAGGLUTININ A virus (strain A/Hong

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I80A4|HEMAGGLUTININ A virus (strain A/Memphis/4/1980

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I000X|HEMAGGLUTININ A virus (strain A/X-31

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I77A8|HEMAGGLUTININ A virus (strain A/England/321/1977

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I71A3|HEMAGGLUTININ A virus (strain A/Equine/Tokyo/1971

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 433 IDLWSYNAE 441


>sp|HEMA_I78A8|HEMAGGLUTININ A virus (strain A/Memphis/18/1978

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I71A1|HEMAGGLUTININ A virus (strain A/Memphis/1/1971

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I68A6|HEMAGGLUTININ A virus (strain A/Northern

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I84A5|HEMAGGLUTININ A virus (strain A/Swine/Ukkel/1/1984

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I78A7|HEMAGGLUTININ A virus (strain A/Memphis/2/1978

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I68A4|HEMAGGLUTININ A virus (strain A/Hong

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I68A0|HEMAGGLUTININ A virus (strain A/Aichi/2/1968

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I79A0|HEMAGGLUTININ A virus (strain A/Bangkok/1/1979

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 418 IDLWSYNAE 426


>sp|HEMA_I76A6|HEMAGGLUTININ A virus (strain A/Memphis/110/1976

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I86A1|HEMAGGLUTININ A virus (strain A/Memphis/6/1986

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 418 IDLWSYNAE 426


>sp|HEMA_I77A4|HEMAGGLUTININ A virus (strain A/Swine/Colorado/1/1977

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I75A3|HEMAGGLUTININ A virus (strain A/Victoria/3/1975

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 435 IDLWSYNAE 443


>sp|HEMA_I75A0|HEMAGGLUTININ A virus (strain A/Beijing/39/1975

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|HEMA_I72A2|HEMAGGLUTININ A virus (strain A/Udorn/307/1972

Query: 1   IDLWPGNGE 9
           IDLW  N E
Sbjct: 434 IDLWSYNAE 442


>sp|POLN_RUBVB|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRD1) (RUBV)

Query: 1   IDLWP 5
           +DLWP
Sbjct: 192 VDLWP 196


>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)

Query: 1   IDLWP 5
           +DLWP
Sbjct: 192 VDLWP 196


>sp|POLN_RUBVN|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RN-UK86) (RUBV)

Query: 1   IDLWP 5
           +DLWP
Sbjct: 192 VDLWP 196


>sp|POLN_RUBVC|NON-STRUCTURAL polyprotein p200|Rubella virus (strain BRDII) (RUBV)

Query: 1   IDLWP 5
           +DLWP
Sbjct: 192 VDLWP 196


>sp|P100_HHV6Z|LARGE structural phosphoprotein|Human herpesvirus 6B (strain Z29)

Query: 5   PGNGE 9
           PGNGE
Sbjct: 769 PGNGE 773


>sp|P100_HHV6H|LARGE structural phosphoprotein|Human herpesvirus 6B (HHV-6 variant

Query: 5   PGNGE 9
           PGNGE
Sbjct: 769 PGNGE 773


>sp|POLN_RUBVV|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336) (RUBV)

Query: 1   IDLWP 5
           +DLWP
Sbjct: 192 VDLWP 196


>sp|POLN_RUBVT|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Therien) (RUBV)

Query: 1   IDLWP 5
           +DLWP
Sbjct: 192 VDLWP 196


>sp|POLN_RUBVO|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336 vaccine)

Query: 1   IDLWP 5
           +DLWP
Sbjct: 192 VDLWP 196


>sp|POLN_RUBVD|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Cendehill) (RUBV)

Query: 1   IDLWP 5
           +DLWP
Sbjct: 192 VDLWP 196


>sp|P100_HHV6U|LARGE structural phosphoprotein|Human herpesvirus 6A (strain Uganda-1102)

Query: 5   PGNGE 9
           PGNGE
Sbjct: 781 PGNGE 785


>sp|CAPSH_ADE05|HEXON protein|Human adenovirus C serotype 5

Query: 4   WPGN 7
           WPGN
Sbjct: 731 WPGN 734


>sp|POLN_RUBVM|NON-STRUCTURAL polyprotein p200|Rubella virus (strain M33) (RUBV)

Query: 1   IDLWP 5
           +DLWP
Sbjct: 192 VDLWP 196


>sp|CAPSH_ADE41|HEXON protein|Human adenovirus F serotype 41

Query: 4   WPGN 7
           WPGN
Sbjct: 704 WPGN 707


>sp|CAPSH_ADE40|HEXON protein|Human adenovirus F serotype 40

Query: 4   WPGN 7
           WPGN
Sbjct: 702 WPGN 705


>sp|CAPSH_ADE12|HEXON protein|Human adenovirus A serotype 12

Query: 4   WPGN 7
           WPGN
Sbjct: 698 WPGN 701


>sp|CAPSH_ADE09|HEXON protein|Human adenovirus D serotype 9

Query: 4   WPGN 7
           WPGN
Sbjct: 722 WPGN 725


>sp|CAPSH_ADE02|HEXON protein|Human adenovirus C serotype 2

Query: 4   WPGN 7
           WPGN
Sbjct: 747 WPGN 750


>sp|CAPSH_ADE16|HEXON protein|Human adenovirus B serotype 16

Query: 4   WPGN 7
           WPGN
Sbjct: 719 WPGN 722


>sp|EBNA3_EBVA8|EPSTEIN-BARR nuclear antigen 3|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 4   WPGNGEG 10
           WP  GEG
Sbjct: 854 WPVQGEG 860


>sp|CAPSH_ADE07|HEXON protein|Human adenovirus B serotype 7

Query: 4   WPGN 7
           WPGN
Sbjct: 716 WPGN 719


>sp|EBNA3_EBVG|EPSTEIN-BARR nuclear antigen 3|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 4   WPGNGEG 10
           WP  GEG
Sbjct: 864 WPVQGEG 870


>sp|EBNA3_EBVB9|EPSTEIN-BARR nuclear antigen 3|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 4   WPGNGEG 10
           WP  GEG
Sbjct: 902 WPVQGEG 908


>sp|POLG_HCVED|GENOME polyprotein|Hepatitis C virus genotype 4a

Query: 1    IDLWPGNGEG 10
            +D+ PG G G
Sbjct: 1849 VDILPGYGAG 1858


>sp|CAPSH_ADE03|HEXON protein|Human adenovirus B serotype 3

Query: 4   WPGN 7
           WPGN
Sbjct: 723 WPGN 726


>sp|DR6_HHV6Z|G2/M cell-cycle inhibitor DR6|Human herpesvirus 6B (strain Z29)

Query: 1   IDLWPGNGE 9
           +  WP NG+
Sbjct: 326 LSFWPDNGK 334


>sp|POLG_LJUV1|GENOME polyprotein|Ljunganvirus 1 (LV) (Ljungan virus

Query: 2   DLWPGNGE 9
           DL+PG  E
Sbjct: 910 DLFPGRKE 917


>sp|VP4_ROTH6|OUTER capsid protein VP4|Rotavirus A (strain

Query: 3   LWPGNGE 9
           LW  NGE
Sbjct: 174 LWTYNGE 180


>sp|POLG_JAEVJ|GENOME polyprotein|Japanese encephalitis virus (strain Jaoars982)

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1696 LDLHPGSGK 1704


>sp|HEMA_I06A0|HEMAGGLUTININ A virus (strain A/Russia:St.Petersburg/8/2006

Query: 1   IDLWPGNGE 9
           ID+W  N E
Sbjct: 432 IDVWTYNAE 440


>sp|DNBI_EBVG|MAJOR DNA-binding protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1   IDLWPGN 7
           ID+ PGN
Sbjct: 818 IDVVPGN 824


>sp|DNBI_EBVB9|MAJOR DNA-binding protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1   IDLWPGN 7
           ID+ PGN
Sbjct: 818 IDVVPGN 824


>sp|DNBI_EBVA8|MAJOR DNA-binding protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1   IDLWPGN 7
           ID+ PGN
Sbjct: 818 IDVVPGN 824


>sp|POLG_JAEV5|GENOME polyprotein|Japanese encephalitis virus (strain SA(v))

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1696 LDLHPGSGK 1704


>sp|POLG_JAEV1|GENOME polyprotein|Japanese encephalitis virus (strain SA-14)

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1696 LDLHPGSGK 1704


>sp|POLG_JAEVM|GENOME polyprotein|Japanese encephalitis virus (strain M28)

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1696 LDLHPGSGK 1704


>sp|L_PIV5W|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain 21004-WR)

Query: 1    IDLWPGNG 8
            I LW GN 
Sbjct: 1875 IPLWNGNA 1882


>sp|L_PIV5|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain W3)

Query: 1    IDLWPGNG 8
            I LW GN 
Sbjct: 1875 IPLWNGNA 1882


>sp|POLG_TMUV|GENOME polyprotein|Tembusu virus (TMUV)

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1690 LDLHPGSGK 1698


>sp|POLG_DEN1S|GENOME polyprotein|Dengue virus type 1 (strain

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1666 MDLHPGSGK 1674


>sp|POLG_DEN1B|GENOME polyprotein|Dengue virus type 1 (strain

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1667 MDLHPGSGK 1675


>sp|POLG_DEN1W|GENOME polyprotein|Dengue virus type 1 (strain

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1667 MDLHPGSGK 1675


>sp|POLG_DEN3P|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1665 MDLHPGSGK 1673


>sp|POLG_DEN3C|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1665 MDLHPGSGK 1673


>sp|POLG_DEN3S|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1665 MDLHPGSGK 1673


>sp|POLG_DEN3M|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1665 MDLHPGSGK 1673


>sp|POLG_DEN3I|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1    IDLWPGNGE 9
            +DL PG+G+
Sbjct: 1665 MDLHPGSGK 1673


>sp|TRX1_HHV8P|TRIPLEX capsid protein 1|Human herpesvirus 8 type P

Query: 3   LWPGNGEG 10
           +W G+G G
Sbjct: 131 VWYGSGSG 138


>sp|GAG_HV1ET|GAG polyprotein|Human immunodeficiency virus type 1

Query: 3   LWPGN 7
           LWP N
Sbjct: 434 LWPSN 438


>sp|L_CCHFI|RNA-DIRECTED RNA polymerase L|Crimean-Congo hemorrhagic fever virus (strain

Query: 1    IDLWPGN 7
            +D W GN
Sbjct: 2441 LDSWDGN 2447


>sp|HEMA_I83A1|HEMAGGLUTININ A virus (strain A/Chile/1/1983

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 433 LDIWTYNAE 441


>sp|HEMA_I76AI|HEMAGGLUTININ A virus (strain A/Swine/New

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 433 LDIWTYNAE 441


>sp|HEMA_I80AA|HEMAGGLUTININ A virus (strain A/India/6263/1980

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 433 LDIWTYNAE 441


>sp|HEMA_I79A4|HEMAGGLUTININ A virus (strain A/Kiev/59/1979

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 433 LDIWTYNAE 441


>sp|NRAM_I74A1|NEURAMINIDASE A virus (strain A/Equine/Cor/16/1974

Query: 1   IDLWPGNGE 9
           ID W  N E
Sbjct: 408 IDYWNDNSE 416


>sp|L_MUMPZ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype N (strain

Query: 3    LWPGNGE 9
            LW GN +
Sbjct: 1883 LWNGNSD 1889


>sp|L_MUMPM|RNA-DIRECTED RNA polymerase L|Mumps virus genotype B (strain

Query: 3    LWPGNGE 9
            LW GN +
Sbjct: 1883 LWNGNSD 1889


>sp|L_MUMPJ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype A (strain

Query: 3    LWPGNGE 9
            LW GN +
Sbjct: 1883 LWNGNSD 1889


>sp|HEMA_I96A3|HEMAGGLUTININ A virus (strain A/China:Nanchang/11/1996

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 432 LDIWTYNAE 440


>sp|HEMA_I77AA|HEMAGGLUTININ A virus (strain A/Brazil/11/1978

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 433 LDIWTYNAE 441


>sp|HEMA_I96A2|HEMAGGLUTININ A virus (strain A/USA:Memphis/10/1996

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 433 LDIWTYNAE 441


>sp|HEMA_I77AB|HEMAGGLUTININ A virus (strain A/USSR/90/1977

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 433 LDIWTYNAE 441


>sp|HEMA_I54A0|HEMAGGLUTININ A virus (strain A/Leningrad/1/1954

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 433 LDIWTYNAE 441


>sp|HEMA_I51A0|HEMAGGLUTININ A virus (strain A/USA:Albany/12/1951

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 433 LDIWTYNAE 441


>sp|HEMA_I07A0|HEMAGGLUTININ A virus (strain A/USA:Texas/UR06-0195/2007

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 432 LDIWTYNAE 440


>sp|HEMA_I00A1|HEMAGGLUTININ A virus (strain A/New

Query: 1   IDLWPGNGE 9
           +D+W  N E
Sbjct: 432 LDIWTYNAE 440




97|Sequence|481|490|GNGEGASTLQ

>sp|VL2_HPV29|MINOR capsid protein L2|Human papillomavirus 29

Query: 1   GNGEGAST 8
           G G GA+T
Sbjct: 369 GGGRGATT 376


>sp|POLG_HCVBB|GENOME polyprotein|Hepatitis C virus genotype 2c

Query: 1    GNGEGA 6
            G GEGA
Sbjct: 1911 GQGEGA 1916


>sp|POLG_HCVJP|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 1    GNGEGA 6
            G GEGA
Sbjct: 1911 GQGEGA 1916


>sp|POLG_HCVJ8|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 1    GNGEGA 6
            G GEGA
Sbjct: 1911 GQGEGA 1916




98|Sequence|486|495|ASTLQGEPRA

>sp|R1AB_SARS2|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 2    STLQGEP 8
            STLQG P
Sbjct: 5602 STLQGPP 5608


>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 2    STLQGEP 8
            STLQG P
Sbjct: 5579 STLQGPP 5585


>sp|R1A_MERS1|REPLICASE polyprotein 1a|Middle East respiratory syndrome-related coronavirus

Query: 1   ASTLQGEP 8
            +TLQG+P
Sbjct: 118 GTTLQGKP 125


>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related

Query: 1   ASTLQGEP 8
            +TLQG+P
Sbjct: 118 GTTLQGKP 125


>sp|DPOL_ADE40|DNA polymerase|Human adenovirus F serotype 40

Query: 1   ASTLQGEPR 9
           A  LQG PR
Sbjct: 390 APKLQGRPR 398


>sp|POLN_SINDO|POLYPROTEIN P1234|Sindbis virus subtype Ockelbo (strain

Query: 3   TLQGEP 8
           TLQG+P
Sbjct: 968 TLQGDP 973


>sp|POLN_SINDV|POLYPROTEIN P1234|Sindbis virus (SINV)

Query: 3   TLQGEP 8
           TLQG+P
Sbjct: 968 TLQGDP 973


>sp|SHUT_ADE05|SHUTOFF protein|Human adenovirus C serotype 5

Query: 2   STLQGEPR 9
           STL+GE R
Sbjct: 405 STLKGEAR 412


>sp|SHUT_ADE02|SHUTOFF protein|Human adenovirus C serotype 2

Query: 2   STLQGEPR 9
           STL+GE R
Sbjct: 405 STLKGEAR 412




99|Sequence|491|500|GEPRAPTPPS

>sp|TRX2_HCMVM|TRIPLEX capsid protein 2|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   GEPRAPTPP 9
           GEPR P  P
Sbjct: 248 GEPRTPARP 256


>sp|TRX2_HCMVA|TRIPLEX capsid protein 2|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   GEPRAPTPP 9
           GEPR P  P
Sbjct: 248 GEPRTPARP 256


>sp|POLN_EEEVF|POLYPROTEIN P1234|Eastern equine encephalitis virus (strain

Query: 2    EPRAPTPPS 10
            E RAP+PPS
Sbjct: 1771 ETRAPSPPS 1779


>sp|VP12_CTFVL|UNCHARACTERIZED protein VP12|Colorado tick fever virus (strain

Query: 1   GEPRAPTPPS 10
           G+PR P PP+
Sbjct: 134 GDPREPAPPA 143


>sp|POLG_BANV|GENOME polyprotein|Banzi virus (BANV)

Query: 2    EPRAPTPP 9
            + RAP PP
Sbjct: 2849 DTRAPEPP 2856


>sp|VIF_HV196|VIRION infectivity factor|Human immunodeficiency virus type 1

Query: 3   PRAPTPP 9
           PR P PP
Sbjct: 156 PRRPKPP 162


>sp|GAG_FOAMV|GAG polyprotein|Human spumaretrovirus (SFVcpz(hu)) (Human foamy

Query: 2   EPRAPTPP 9
            PRAP+PP
Sbjct: 213 HPRAPSPP 220


>sp|SPIKE_CVH22|SPIKE glycoprotein|Human coronavirus 229E (HCoV-229E)

Query: 2    EPRAPT 7
            EPR PT
Sbjct: 999  EPRIPT 1004


>sp|GP_CCHFI|ENVELOPMENT polyprotein|Crimean-Congo hemorrhagic fever virus (strain

Query: 4   RAPTPPS 10
           R PTPP+
Sbjct: 182 RPPTPPA 188


>sp|ICP22_HHV11|TRANSCRIPTIONAL regulator ICP22|Human herpesvirus 1 (strain 17)

Query: 2   EPRAPTP 8
           +PRAPTP
Sbjct: 157 QPRAPTP 163


>sp|EBNA4_EBVG|EPSTEIN-BARR nuclear antigen 4|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 3   PRAPTPPS 10
           PRAPTP S
Sbjct: 698 PRAPTPMS 705


>sp|EBNA4_EBVB9|EPSTEIN-BARR nuclear antigen 4|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 3   PRAPTPPS 10
           PRAPTP S
Sbjct: 698 PRAPTPMS 705


>sp|POLG_WSLV|GENOME polyprotein|Wesselsbron virus (WSLV)

Query: 2    EPRAPTPP 9
            + +AP PP
Sbjct: 2860 DTKAPPPP 2867


>sp|LTP_HCMVM|LARGE tegument protein deneddylase|Human cytomegalovirus (strain Merlin)

Query: 5    APTPP 9
            APTPP
Sbjct: 2095 APTPP 2099


>sp|LTP_HCMVT|LARGE tegument protein deneddylase|Human cytomegalovirus (strain Towne)

Query: 5    APTPP 9
            APTPP
Sbjct: 2096 APTPP 2100


>sp|LTP_HCMVA|LARGE tegument protein deneddylase|Human cytomegalovirus (strain AD169)

Query: 5    APTPP 9
            APTPP
Sbjct: 2095 APTPP 2099


>sp|US08_HCMVA|UNIQUE short US8 glycoprotein|Human cytomegalovirus (strain AD169)

Query: 1  GEPRAPTPPS 10
          GEP    PP+
Sbjct: 42 GEPNYVAPPA 51


>sp|US08_HCMVM|MEMBRANE glycoprotein US8|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1  GEPRAPTPPS 10
          GEP    PP+
Sbjct: 42 GEPNYVAPPA 51


>sp|VE2_HPV41|REGULATORY protein E2|Human papillomavirus type 41

Query: 1   GEPRAPTPP 9
           GEP AP P 
Sbjct: 234 GEPVAPAPK 242




100|Sequence|496|505|PTPPSGTEVT

>sp|NEC2_HHV6U|NUCLEAR egress protein 2|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   PTPPSGTEV 9
           PTP SG+ V
Sbjct: 268 PTPASGSVV 276


>sp|L_MABVP|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Popp-67)

Query: 2    TPPSGTEV 9
            T P+GTE+
Sbjct: 1838 TTPTGTEI 1845


>sp|VL1_HPV04|MAJOR capsid protein L1|Human papillomavirus 4

Query: 1   PTPPSGTE 8
           P PPSG E
Sbjct: 419 PPPPSGIE 426


>sp|L_ISFV|RNA-DIRECTED RNA polymerase L|Isfahan virus (ISFV)

Query: 1    PTPPSGTE 8
            P PPS  E
Sbjct: 1696 PDPPSALE 1703


>sp|VL1_HPV65|MAJOR capsid protein L1|Human papillomavirus 65

Query: 1   PTPPSGTE 8
           P PPSG E
Sbjct: 419 PPPPSGIE 426


>sp|L_SINV|RNA-DIRECTED RNA polymerase L|Sin Nombre orthohantavirus (SNV) (Sin

Query: 1  PTPPSG 6
          PT PSG
Sbjct: 80 PTSPSG 85


>sp|L_CHAV|RNA-DIRECTED RNA polymerase L|Chandipura virus (strain I653514) (CHPV)

Query: 1    PTPPSGTE 8
            P PPS  E
Sbjct: 1696 PDPPSALE 1703


>sp|L_VSNJH|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis New Jersey virus

Query: 1    PTPPSGTE 8
            P PPS  E
Sbjct: 1707 PEPPSALE 1714


>sp|POLG_KOKV|GENOME polyprotein|Kokobera virus (KOKV)

Query: 1    PTPPSGTEVT 10
            P PP+G E+ 
Sbjct: 2873 PEPPAGAEMA 2882


>sp|L_VSIVC|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    PTPPSGTE 8
            P PPS  E
Sbjct: 1707 PEPPSALE 1714


>sp|L_VSNJO|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis New Jersey virus

Query: 1    PTPPSGTE 8
            P PPS  E
Sbjct: 1707 PEPPSALE 1714


>sp|L_VSIVM|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    PTPPSGTE 8
            P PPS  E
Sbjct: 1707 PEPPSALE 1714


>sp|L_VSIVS|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    PTPPSGTE 8
            P PPS  E
Sbjct: 1707 PEPPSALE 1714


>sp|L_VSIVN|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    PTPPSGTE 8
            P PPS  E
Sbjct: 1707 PEPPSALE 1714


>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 2   TPPSGTEVT 10
           T  SGTEVT
Sbjct: 862 TVESGTEVT 870


>sp|VE4_HPV28|PROTEIN E4|Human papillomavirus 28

Query: 4  PSGTEVT 10
          PSGT+VT
Sbjct: 86 PSGTQVT 92


>sp|L_MABVO|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ozolin-75)

Query: 2    TPPSGTE 8
            T P+GTE
Sbjct: 1838 TTPTGTE 1844


>sp|L_VSIVA|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    PTPPSGTE 8
            P PPS  E
Sbjct: 1707 PEPPSALE 1714


>sp|R1A_SARS|REPLICASE polyprotein 1a|Severe acute respiratory syndrome coronavirus

Query: 2   TPPSGTEVT 10
           T  SGTEVT
Sbjct: 862 TVESGTEVT 870


>sp|HEMA_I18A0|HEMAGGLUTININ A virus (strain A/Brevig

Query: 3   PPSGTE 8
           PP+GT+
Sbjct: 199 PPTGTD 204


>sp|ICP27_HHV7J|MRNA export factor ICP27 homolog|Human herpesvirus 7 (strain JI)

Query: 1   PTPPSGTEVT 10
           PT P G+  T
Sbjct: 102 PTAPFGSSYT 111


>sp|DPOL_ADE07|DNA polymerase|Human adenovirus B serotype 7

Query: 2   TPPSGT 7
           TPP+GT
Sbjct: 850 TPPAGT 855


>sp|DPOL_ADE04|DNA polymerase|Human adenovirus E serotype 4

Query: 2   TPPSGT 7
           TPP+GT
Sbjct: 921 TPPAGT 926


>sp|PRTP_HHV2|PROCESSING and transport protein|Human herpesvirus 2 (HHV-2) (Human

Query: 2   TPPSG 6
           TPPSG
Sbjct: 164 TPPSG 168


>sp|NCAP_PUUMS|NUCLEOPROTEIN virus (strain Sotkamo/V-2969/81)

Query: 1  PTPPSGTE 8
          PT P+G E
Sbjct: 78 PTDPTGIE 85


>sp|POLG_TMUV|GENOME polyprotein|Tembusu virus (TMUV)

Query: 1    PTPPSGT 7
            P PP+GT
Sbjct: 2886 PEPPAGT 2892


>sp|VL1_HPV60|MAJOR capsid protein L1|Human papillomavirus type 60

Query: 1   PTPPSGTE 8
           P PP G E
Sbjct: 417 PPPPQGIE 424


>sp|NCAP_PUUME|NUCLEOPROTEIN virus (strain Evo/12CG/93)

Query: 1  PTPPSGTE 8
          PT P+G E
Sbjct: 78 PTDPTGIE 85


>sp|NCAP_PUUMU|NUCLEOPROTEIN virus (strain Udmurtia/894CG/91)

Query: 1  PTPPSGTE 8
          PT P+G E
Sbjct: 78 PTDPTGIE 85


>sp|NCAP_PUUMP|NUCLEOPROTEIN virus (strain P360)

Query: 1  PTPPSGTE 8
          PT P+G E
Sbjct: 78 PTDPTGIE 85


>sp|NCAP_PUUMK|NUCLEOPROTEIN virus (strain K27)

Query: 1  PTPPSGTE 8
          PT P+G E
Sbjct: 78 PTDPTGIE 85


>sp|NCAP_PUUMG|NUCLEOPROTEIN virus (strain Bank vole/Russia/CG1820/1984)

Query: 1  PTPPSGTE 8
          PT P+G E
Sbjct: 78 PTDPTGIE 85




101|Sequence|501|510|GTEVTLAEVP

>sp|DR3_HHV6U|UNCHARACTERIZED protein DR3|Human herpesvirus 6A (strain Uganda-1102)

Query: 1   GTEVTLAE 8
           GT+VTL+E
Sbjct: 132 GTDVTLSE 139


>sp|UL11P_HCMVM|PROTEIN UL11|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   GTEVTLAEVP 10
           G E T AE P
Sbjct: 206 GFEATAAETP 215


>sp|CAPSD_SOUV3|CAPSID protein VP1|Southampton virus (strain GI/Human/United

Query: 1   GTEVTLAEVP 10
           GT++ L E+P
Sbjct: 395 GTDINLWEIP 404


>sp|NRAM_INBYB|NEURAMINIDASE B virus (strain B/Yamagata/16/1988)

Query: 2  TEVTLAEVP 10
          TE+T  +VP
Sbjct: 43 TEITAPKVP 51


>sp|BET_FOAMV|PROTEIN Bet|Human spumaretrovirus (SFVcpz(hu)) (Human foamy

Query: 3  EVTLAEVP 10
          E+T+AE P
Sbjct: 35 ELTIAEEP 42




102|Sequence|506|515|LAEVPLLDEV

>sp|POLG_SVSAP|GENOME polyprotein|Sapporo virus (isolate

Query: 3   EVPLLDE 9
           E+PL+DE
Sbjct: 170 ELPLVDE 176


>sp|POLG_SVM93|GENOME polyprotein|Sapporo virus (strain Human/United

Query: 3   EVPLLDE 9
           E+PL+DE
Sbjct: 170 ELPLVDE 176


>sp|POLG_ZIKVK|GENOME polyprotein|Zika virus (isolate ZIKV/Human/Cambodia/FSS13025/2010)

Query: 3   EVPLLDE 9
           E P+LDE
Sbjct: 174 ECPMLDE 180


>sp|POLG_ZIKVF|GENOME polyprotein|Zika virus (isolate ZIKV/Human/French

Query: 3   EVPLLDE 9
           E P+LDE
Sbjct: 174 ECPMLDE 180


>sp|POLG_ZIKV|GENOME polyprotein|Zika virus (ZIKV)

Query: 3   EVPLLDE 9
           E P+LDE
Sbjct: 174 ECPMLDE 180


>sp|POLG_CXA24|GENOME polyprotein|Coxsackievirus A24 (strain EH24/70)

Query: 1   LAEVPLLDE 9
            A VPL DE
Sbjct: 794 FARVPLKDE 802


>sp|DPOL_VZVO|DNA polymerase catalytic subunit|Varicella-zoster virus (strain Oka

Query: 3  EVPLLD 8
          EVP+LD
Sbjct: 80 EVPILD 85


>sp|DPOL_VZVD|DNA polymerase catalytic subunit|Varicella-zoster virus (strain

Query: 3  EVPLLD 8
          EVP+LD
Sbjct: 80 EVPILD 85


>sp|VP1_POVWU|MAJOR capsid protein VP1|WU polyomavirus (WUPyV)

Query: 2   AEVPLLDE 9
           + +PLLDE
Sbjct: 243 STIPLLDE 250


>sp|VP1_POVKI|MAJOR capsid protein VP1|KI polyomavirus (isolate Stockholm 350)

Query: 2   AEVPLLDE 9
           + +PLLDE
Sbjct: 251 STIPLLDE 258


>sp|VP1_POVK6|MAJOR capsid protein VP1|KI polyomavirus (isolate Stockholm 60)

Query: 2   AEVPLLDE 9
           + +PLLDE
Sbjct: 251 STIPLLDE 258


>sp|VP1_POVK3|MAJOR capsid protein VP1|KI polyomavirus (isolate Stockholm 380)

Query: 2   AEVPLLDE 9
           + +PLLDE
Sbjct: 251 STIPLLDE 258


>sp|CAPSD_TTVV6|CAPSID protein|Torque teno virus (isolate Human/China/CT23F/2001)

Query: 3   EVPLLDE 9
           E PLL+E
Sbjct: 689 EAPLLEE 695


>sp|L_EBOSM|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 2   AEVPLLDEV 10
           A+ PL+D++
Sbjct: 266 ADYPLVDDI 274


>sp|VE6_HPV56|PROTEIN E6|Human papillomavirus 56

Query: 3  EVPLLD 8
          E+PL+D
Sbjct: 23 EIPLID 28


>sp|DR2_HHV6U|UNCHARACTERIZED protein DR2|Human herpesvirus 6A (strain Uganda-1102)

Query: 5   PLLDEV 10
           PLLDE+
Sbjct: 208 PLLDEL 213


>sp|DR1_HHV6Z|UNCHARACTERIZED protein DR1|Human herpesvirus 6B (strain Z29)

Query: 5   PLLDEV 10
           PLLDE+
Sbjct: 339 PLLDEL 344


>sp|DR1_HHV6U|UNCHARACTERIZED protein DR1|Human herpesvirus 6A (strain Uganda-1102)

Query: 5   PLLDEV 10
           PLLDE+
Sbjct: 277 PLLDEL 282


>sp|POLG_BUSV|GENOME polyprotein|Bussuquara virus (BUSV)

Query: 1    LAEVPLLDEV 10
            + ++P L+EV
Sbjct: 2426 VTDIPTLEEV 2435




103|Sequence|511|520|LLDEVAPEPL

>sp|VL2_HPV19|MINOR capsid protein L2|Human papillomavirus 19

Query: 4   EVAPEPL 10
           EVAPEP+
Sbjct: 163 EVAPEPV 169


>sp|VL2_HPV05|MINOR capsid protein L2|Human papillomavirus 5

Query: 4   EVAPEPL 10
           EVAPEP+
Sbjct: 164 EVAPEPI 170


>sp|VL2_HPV36|MINOR capsid protein L2|Human papillomavirus 36

Query: 4   EVAPEPL 10
           EVAPEP+
Sbjct: 164 EVAPEPI 170


>sp|VL2_HPV24|MINOR capsid protein L2|Human papillomavirus 24

Query: 4   EVAPEP 9
           EVAPEP
Sbjct: 164 EVAPEP 169


>sp|ORF50_HHV8P|REPLICATION and transcription activator|Human herpesvirus 8 type P

Query: 1   LLDEVAPE 8
           LLDE  PE
Sbjct: 593 LLDEAGPE 600


>sp|VL2_HPV5B|MINOR capsid protein L2|Human papillomavirus type 5b

Query: 4   EVAPEPL 10
           EVAPEP+
Sbjct: 164 EVAPEPI 170


>sp|VL2_HPV47|MINOR capsid protein L2|Human papillomavirus 47

Query: 4   EVAPEPL 10
           EVAPEP+
Sbjct: 164 EVAPEPV 170


>sp|VL2_HPV21|MINOR capsid protein L2|Human papillomavirus 21

Query: 4   EVAPEP 9
           EVAPEP
Sbjct: 164 EVAPEP 169


>sp|POLS_EEEVF|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 5   VAPEPL 10
           +APEPL
Sbjct: 591 LAPEPL 596


>sp|POLS_EEEV1|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 5   VAPEPL 10
           +APEPL
Sbjct: 591 LAPEPL 596


>sp|POLS_EEEV8|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 5   VAPEPL 10
           +APEPL
Sbjct: 591 LAPEPL 596


>sp|GM_HHV2H|ENVELOPE glycoprotein M|Human herpesvirus 2 (strain HG52)

Query: 1   LLDEVAPE 8
           + DEVAP+
Sbjct: 416 IYDEVAPD 423


>sp|VL2_HPV25|MINOR capsid protein L2|Human papillomavirus 25

Query: 4   EVAPEP 9
           EVAPEP
Sbjct: 163 EVAPEP 168


>sp|POLS_EEEV3|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 5   VAPEPL 10
           +APEPL
Sbjct: 590 LAPEPL 595


>sp|VL2_HPV20|MINOR capsid protein L2|Human papillomavirus 20

Query: 4   EVAPEP 9
           EVAPEP
Sbjct: 164 EVAPEP 169


>sp|VL2_HPV14|MINOR capsid protein L2|Human papillomavirus 14

Query: 4   EVAPEP 9
           EVAPEP
Sbjct: 164 EVAPEP 169


>sp|POLS_EEEV|STRUCTURAL polyprotein|Eastern equine encephalitis virus (EEEV)

Query: 5   VAPEPL 10
           +APEPL
Sbjct: 589 LAPEPL 594


>sp|VL2_HPV08|MINOR capsid protein L2|Human papillomavirus type 8

Query: 4   EVAPEP 9
           EVAPEP
Sbjct: 164 EVAPEP 169


>sp|PG064_VACCC|PROTEIN OPG064|Vaccinia virus (strain Copenhagen) (VACV)

Query: 1   LLDEVAPEPL 10
           ++DE+ PE +
Sbjct: 198 IIDELCPEAI 207


>sp|POLG_HRV15|GENOME polyprotein|Human rhinovirus C (strain C15)

Query: 2    LDEVAP 7
            LDE+AP
Sbjct: 1172 LDELAP 1177


>sp|NCAP_UUKS|NUCLEOPROTEIN virus (strain S23) (UUKV)

Query: 1   LLDEVAPE 8
           L+DE  PE
Sbjct: 161 LIDETLPE 168


>sp|GAG_HV1SE|GAG polyprotein|Human immunodeficiency virus type 1

Query: 3   DEVAPEP 9
           +E+AP P
Sbjct: 468 EEIAPSP 474


>sp|GAG_HV1M2|GAG polyprotein|Human immunodeficiency virus type 1

Query: 3   DEVAPEP 9
           +E+AP P
Sbjct: 466 EEIAPSP 472


>sp|VL2_HPV12|MINOR capsid protein L2|Human papillomavirus 12

Query: 4   EVAPEPL 10
           EVAP+P+
Sbjct: 164 EVAPDPI 170




104|Sequence|516|525|APEPLLPAGE

>sp|UL298_HCMVA|PROTEIN UL29/UL28|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   EPLLPAGE 10
           EP++P GE
Sbjct: 270 EPVMPLGE 277


>sp|UL298_HCMVM|PROTEIN UL29/28|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   EPLLPAGE 10
           EP++P GE
Sbjct: 269 EPVMPLGE 276


>sp|UL29_HCMVA|UNCHARACTERIZED protein UL29|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   EPLLPAGE 10
           EP++P GE
Sbjct: 270 EPVMPLGE 277


>sp|NCAP_VSIVG|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 3   EPLLPAG 9
           EPL+P G
Sbjct: 172 EPLVPEG 178


>sp|NCAP_VSIVS|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 3   EPLLPAG 9
           EPL+P G
Sbjct: 172 EPLVPEG 178


>sp|NCAP_VSIVN|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 3   EPLLPAG 9
           EPL+P G
Sbjct: 172 EPLVPEG 178


>sp|NCAP_VSIVC|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 3   EPLLPAG 9
           EPL+P G
Sbjct: 172 EPLVPEG 178


>sp|NCAP_VSIVA|NUCLEOPROTEIN stomatitis Indiana virus (strain

Query: 3   EPLLPAG 9
           EPL+P G
Sbjct: 172 EPLVPEG 178


>sp|HEMA_I36A0|HEMAGGLUTININ A virus (strain A/Henry/1936

Query: 3  EPLLPA 8
          +PLLPA
Sbjct: 85 DPLLPA 90


>sp|POL_HV2SB|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 3  EPLLPAG 9
          EPL+P G
Sbjct: 65 EPLVPTG 71


>sp|LTP_EBVB9|LARGE tegument protein deneddylase|Epstein-Barr virus (strain B95-8)

Query: 1   APEPLLP 7
           AP PLLP
Sbjct: 552 APSPLLP 558


>sp|POL_HV2D1|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 3  EPLLPAG 9
          EPL+P G
Sbjct: 65 EPLVPTG 71


>sp|VP8_CTFVL|UNCHARACTERIZED protein VP8|Colorado tick fever virus (strain

Query: 2   PEPLLPA 8
           PE LLPA
Sbjct: 426 PESLLPA 432


>sp|MCP_EBVG|MAJOR capsid protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 2   PEPLLPAG 9
           P PL PA 
Sbjct: 572 PTPLAPAA 579


>sp|MCP_EBVA8|MAJOR capsid protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 2   PEPLLPAG 9
           P PL PA 
Sbjct: 572 PTPLAPAA 579


>sp|MCP_EBVB9|MAJOR capsid protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2   PEPLLPAG 9
           P PL PA 
Sbjct: 572 PTPLAPAA 579


>sp|GAG_HV2SB|GAG polyprotein|Human immunodeficiency virus type 2

Query: 3  EPLLPAG 9
          EPL+P G
Sbjct: 65 EPLVPTG 71


>sp|GAG_HV2D1|GAG polyprotein|Human immunodeficiency virus type 2

Query: 3  EPLLPAG 9
          EPL+P G
Sbjct: 65 EPLVPTG 71




105|Sequence|521|530|LPAGEGCATL

>sp|MATRX_MUMPZ|MATRIX protein|Mumps virus genotype N (strain

Query: 2   PAGEGC 7
           P GEGC
Sbjct: 227 PEGEGC 232


>sp|MATRX_MUMPS|MATRIX protein|Mumps virus (strain SBL) (MuV)

Query: 2   PAGEGC 7
           P GEGC
Sbjct: 227 PDGEGC 232


>sp|MATRX_MUMPM|MATRIX protein|Mumps virus genotype B (strain

Query: 2   PAGEGC 7
           P GEGC
Sbjct: 227 PDGEGC 232


>sp|MATRX_MUMPJ|MATRIX protein|Mumps virus genotype A (strain

Query: 2   PAGEGC 7
           P GEGC
Sbjct: 227 PDGEGC 232


>sp|MATRX_MUMP1|MATRIX protein|Mumps virus (strain SBL-1) (MuV)

Query: 2   PAGEGC 7
           P GEGC
Sbjct: 227 PDGEGC 232


>sp|UL27_HCMVM|PROTEIN UL27|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   LPAGEGCA 8
           LPAG  CA
Sbjct: 373 LPAGWACA 380


>sp|UL27_HCMVA|PROTEIN UL27|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   LPAGEGCA 8
           LPAG  CA
Sbjct: 373 LPAGWACA 380


>sp|DPOL_HBVF2|PROTEIN P|Hepatitis B virus genotype F1

Query: 2   PAGEGCA 8
           P G GCA
Sbjct: 259 PTGTGCA 265


>sp|DUT_VZVO|DEOXYURIDINE 5'-triphosphate nucleotidohydrolase|Varicella-zoster virus (strain

Query: 2   PAGEGC 7
           PAGE C
Sbjct: 296 PAGEHC 301


>sp|DUT_VZVD|DEOXYURIDINE 5'-triphosphate nucleotidohydrolase|Varicella-zoster virus (strain

Query: 2   PAGEGC 7
           PAGE C
Sbjct: 296 PAGEHC 301


>sp|POLG_HPEV5|GENOME polyprotein|Human parechovirus 5 (strain CT86-6760)

Query: 1    LPAGEGCATL 10
            +P+G  C T+
Sbjct: 2014 MPSGSPCTTV 2023


>sp|POLG_HPE2W|GENOME polyprotein|Human parechovirus 2 (strain Williamson)

Query: 1    LPAGEGCATL 10
            +P+G  C T+
Sbjct: 2005 MPSGSPCTTV 2014


>sp|POLG_HPE1H|GENOME polyprotein|Human parechovirus 1 (strain Harris)

Query: 1    LPAGEGCATL 10
            +P+G  C T+
Sbjct: 2006 MPSGSPCTTV 2015


>sp|POL_HV1MA|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1  LPAGEGCATL 10
          L  GEGC  +
Sbjct: 51 LETGEGCQQI 60


>sp|PP150_HCMVA|LARGE structural phosphoprotein|Human cytomegalovirus (strain AD169)

Query: 1   LPAGEGCATL 10
           +PAG G A L
Sbjct: 585 VPAGAGAAIL 594


>sp|BFRF2_EBVB9|LATE gene expression regulator BFRF2|Epstein-Barr virus (strain B95-8)

Query: 1   LPAGEGCA 8
           LP GE CA
Sbjct: 551 LPPGERCA 558


>sp|POLG_CXB3W|GENOME polyprotein|Coxsackievirus B3 (strain Woodruff)

Query: 1   LPAGE-GCATL 10
           +P  E GCATL
Sbjct: 196 VPEAEMGCATL 206


>sp|PP150_HCMVM|TEGUMENT protein pp150|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   LPAGEGCATL 10
           +PAG G A L
Sbjct: 586 VPAGAGAAIL 595


>sp|POLG_CXB5P|GENOME polyprotein|Coxsackievirus B5 (strain Peterborough /

Query: 1   LPAGE-GCATL 10
           +P  E GCATL
Sbjct: 196 VPEAEMGCATL 206


>sp|POLG_CXB3N|GENOME polyprotein|Coxsackievirus B3 (strain Nancy)

Query: 1   LPAGE-GCATL 10
           +P  E GCATL
Sbjct: 196 VPEAEMGCATL 206


>sp|LT_POVJC|LARGE T antigen|JC polyomavirus (JCPyV) (JCV)

Query: 1   LPAGEGCATL 10
           LP+G G + L
Sbjct: 486 LPSGHGISNL 495


>sp|POLG_LJUV1|GENOME polyprotein|Ljunganvirus 1 (LV) (Ljungan virus

Query: 1    LPAGEGCATL 10
            +P+G  C T+
Sbjct: 2079 MPSGAPCTTV 2088


>sp|LT_POVWU|LARGE T antigen|WU polyomavirus (WUPyV)

Query: 1   LPAGEGCATL 10
           LP+G G + L
Sbjct: 502 LPSGNGMSNL 511


>sp|GAG_HV1MA|GAG polyprotein|Human immunodeficiency virus type 1

Query: 1  LPAGEGCATL 10
          L  GEGC  +
Sbjct: 51 LETGEGCQQI 60


>sp|POLG_ROCV|GENOME polyprotein|Rocio virus (ROCV)

Query: 4   GEGCATL 10
           G+GC T+
Sbjct: 312 GDGCVTI 318


>sp|DPOL_HBVF6|PROTEIN P|Hepatitis B virus genotype F2

Query: 2   PAGEGC 7
           P+G GC
Sbjct: 259 PSGTGC 264


>sp|DNBI_EBVB9|MAJOR DNA-binding protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 4    GEGCATL 10
            GE CA+L
Sbjct: 1023 GEACASL 1029


>sp|DNBI_EBVG|MAJOR DNA-binding protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 4    GEGCATL 10
            GE CA+L
Sbjct: 1023 GEACASL 1029


>sp|DNBI_EBVA8|MAJOR DNA-binding protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 4    GEGCATL 10
            GE CA+L
Sbjct: 1023 GEACASL 1029


>sp|R1AB_SARS|REPLICASE polyprotein 1ab|Severe acute respiratory syndrome coronavirus

Query: 4    GEGCA 8
            G+GCA
Sbjct: 1307 GQGCA 1311


>sp|Y137_ADE02|UNCHARACTERIZED protein B-137|Human adenovirus C serotype 2

Query: 3  AGEGCATL 10
          AGE CA +
Sbjct: 44 AGEACAVV 51


>sp|POL_HV1YF|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 3    AGEGC 7
            AG+GC
Sbjct: 1433 AGDGC 1437


>sp|R1A_SARS|REPLICASE polyprotein 1a|Severe acute respiratory syndrome coronavirus

Query: 4    GEGCA 8
            G+GCA
Sbjct: 1307 GQGCA 1311


>sp|POL_HV1YB|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 3    AGEGC 7
            AG+GC
Sbjct: 1433 AGDGC 1437


>sp|GD_CHV1|ENVELOPE glycoprotein D|Cercopithecine herpesvirus 1 (CeHV-1) (Simian

Query: 1  LPAGEG 6
          +PAGEG
Sbjct: 19 VPAGEG 24




106|Sequence|526|535|GCATLLNFDE

>sp|POL_HV1YF|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1  GCATLLN 7
          GCA LLN
Sbjct: 56 GCAKLLN 62


>sp|GAG_HV1YF|GAG polyprotein|Human immunodeficiency virus type 1

Query: 1  GCATLLN 7
          GCA LLN
Sbjct: 56 GCAKLLN 62


>sp|RDRP_ROTHW|RNA-DIRECTED RNA polymerase|Rotavirus A (strain RVA/Human/United

Query: 1    GCATLLNFD 9
            GC  L NF+
Sbjct: 1002 GCYQLFNFN 1010


>sp|TEG7_HCMVM|TEGUMENT protein UL51 homolog|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2   CATLLNFDE 10
           C T++ FD+
Sbjct: 237 CPTVMRFDQ 245


>sp|TEG7_HCMVA|TEGUMENT protein UL51 homolog|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   CATLLNFDE 10
           C T++ FD+
Sbjct: 237 CPTVMRFDQ 245


>sp|POL_HV1YB|GAG-POL polyprotein|Human immunodeficiency virus type 1

Query: 1  GCATLLN 7
          GCA L+N
Sbjct: 56 GCAQLIN 62


>sp|GAG_HV1YB|GAG polyprotein|Human immunodeficiency virus type 1

Query: 1  GCATLLN 7
          GCA L+N
Sbjct: 56 GCAQLIN 62


>sp|SPIKE_CVHN5|SPIKE glycoprotein|Human coronavirus HKU1 (isolate N5)

Query: 5   LLNFDE 10
           LLNFDE
Sbjct: 267 LLNFDE 272


>sp|SPIKE_CVHN2|SPIKE glycoprotein|Human coronavirus HKU1 (isolate N2)

Query: 5   LLNFDE 10
           LLNFDE
Sbjct: 267 LLNFDE 272


>sp|POLG_HCVJL|GENOME polyprotein|Hepatitis C virus genotype 6g

Query: 1   GCATLLNFDE 10
            C TL +FD+
Sbjct: 457 ACKTLDSFDQ 466


>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 2    CATLLN 7
            CATL+N
Sbjct: 2765 CATLIN 2770


>sp|R1A_CVHNL|REPLICASE polyprotein 1a|Human coronavirus NL63 (HCoV-NL63)

Query: 2    CATLLN 7
            CATL+N
Sbjct: 2765 CATLIN 2770


>sp|SPIKE_MERS1|SPIKE glycoprotein|Middle East respiratory syndrome-related coronavirus

Query: 1   GCATLL 6
           GC TLL
Sbjct: 175 GCGTLL 180


>sp|VP6_ROTHG|INTERMEDIATE capsid protein VP6|Rotavirus C (isolate RVC/Human/United

Query: 4  TLLNFDE 10
          TLLN D+
Sbjct: 69 TLLNLDD 75


>sp|VP6_ROTHF|INTERMEDIATE capsid protein VP6|Rotavirus C (isolate

Query: 4  TLLNFDE 10
          TLLN D+
Sbjct: 69 TLLNLDD 75


>sp|VP6_ROTHC|INTERMEDIATE capsid protein VP6|Rotavirus C (isolate RVC/Human/United

Query: 4  TLLNFDE 10
          TLLN D+
Sbjct: 69 TLLNLDD 75


>sp|ENV_HV2EH|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   GCATLLN 7
           GC TLL+
Sbjct: 770 GCRTLLS 776


>sp|E434_ADE40|EARLY E4 34 kDa protein|Human adenovirus F serotype 40

Query: 1   GCATLLNFDE 10
           GC    N DE
Sbjct: 214 GCTYCKNLDE 223


>sp|TRM1_HHV7J|TRIPARTITE terminase subunit 1|Human herpesvirus 7 (strain JI)

Query: 4   TLLNFD 9
           TL+NFD
Sbjct: 276 TLINFD 281


>sp|GH_HHV2H|ENVELOPE glycoprotein H|Human herpesvirus 2 (strain HG52)

Query: 2   CATLLNFD 9
           CA  L FD
Sbjct: 589 CAASLRFD 596


>sp|GH_HHV1F|ENVELOPE glycoprotein H|Human herpesvirus 1 (strain F)

Query: 2   CATLLNFD 9
           CA  L FD
Sbjct: 589 CAASLRFD 596


>sp|GH_HHV1E|ENVELOPE glycoprotein H|Human herpesvirus 1 (strain HFEM)

Query: 2   CATLLNFD 9
           CA  L FD
Sbjct: 589 CAASLRFD 596


>sp|GH_HHV11|ENVELOPE glycoprotein H|Human herpesvirus 1 (strain 17)

Query: 2   CATLLNFD 9
           CA  L FD
Sbjct: 589 CAASLRFD 596


>sp|ENV_HV2D2|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 1   GCATLL 6
           GC TLL
Sbjct: 774 GCRTLL 779


>sp|VE6_HPV60|PROTEIN E6|Human papillomavirus type 60

Query: 2   CATLLNFDE 10
           C TLL+F E
Sbjct: 106 CLTLLSFAE 114




107|Sequence|531|540|LNFDELPEPP

>sp|POLN_WEEV|POLYPROTEIN P1234|Western equine encephalitis virus (WEEV)

Query: 2    NFDELPEP 9
            NF ++PEP
Sbjct: 1398 NFSKMPEP 1405


>sp|HEMA_MONPV|PROTEIN OPG185|Monkeypox virus (MPXV)

Query: 4   DELPEP 9
           DE+PEP
Sbjct: 203 DEIPEP 208


>sp|U79_HHV6Z|PROTEIN U79|Human herpesvirus 6B (strain Z29)

Query: 4   DELPEPP 10
           DE  EPP
Sbjct: 207 DEFDEPP 213


>sp|U79_HHV6H|PROTEIN U79/U80|Human herpesvirus 6B (HHV-6 variant

Query: 4   DELPEPP 10
           DE  EPP
Sbjct: 207 DEFDEPP 213


>sp|REV_HV2D1|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 1  LNFDELPEPP 10
          L   ELP+PP
Sbjct: 79 LTIQELPDPP 88


>sp|REV_HV2BE|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 1  LNFDELPEPP 10
          L   ELP+PP
Sbjct: 79 LTIQELPDPP 88


>sp|REV_HV2RO|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 1  LNFDELPEPP 10
          L   ELP+PP
Sbjct: 79 LTIQELPDPP 88


>sp|REV_HV2ST|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 1  LNFDELPEPP 10
          L   ELP+PP
Sbjct: 79 LTIQELPDPP 88


>sp|TEG1_HHV2H|TEGUMENT protein UL46|Human herpesvirus 2 (strain HG52)

Query: 4   DELPEPP 10
           ++LPEPP
Sbjct: 476 EDLPEPP 482


>sp|NEC1_HHV11|NUCLEAR egress protein 1|Human herpesvirus 1 (strain 17)

Query: 3   FDELPEP 9
           FDE P P
Sbjct: 300 FDEFPPP 306


>sp|NEC1_HHV2H|NUCLEAR egress protein 1|Human herpesvirus 2 (strain HG52)

Query: 3   FDELPEP 9
           FDE P P
Sbjct: 299 FDEFPPP 305


>sp|REV_HV2KR|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 1  LNFDELPEPP 10
          L   ELP+PP
Sbjct: 79 LTIQELPDPP 88


>sp|REV_HV2G1|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 1  LNFDELPEPP 10
          L   ELP+PP
Sbjct: 79 LTIHELPDPP 88


>sp|POLN_EEVVT|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 4    DELPEP 9
            DE PEP
Sbjct: 1666 DETPEP 1671


>sp|PHOSP_LBV|PHOSPHOPROTEIN bat virus (LBV)

Query: 1  LNFDELPE 8
          LN D LPE
Sbjct: 44 LNVDSLPE 51


>sp|GP_PUUMU|ENVELOPE glycoprotein|Puumala virus (strain Udmurtia/894CG/91)

Query: 1  LNFDELPEPP 10
          L+F +L E P
Sbjct: 57 LSFQDLSETP 66


>sp|GP_PUUMS|ENVELOPMENT polyprotein|Puumala virus (strain Sotkamo/V-2969/81)

Query: 1   LNFDELPEPP 10
           L+F +L E P
Sbjct: 969 LSFQDLSETP 978


>sp|GP_PUUMP|ENVELOPMENT polyprotein|Puumala virus (strain P360)

Query: 1   LNFDELPEPP 10
           L+F +L E P
Sbjct: 969 LSFQDLSETP 978


>sp|GP_PUUMK|ENVELOPMENT polyprotein|Puumala virus (strain K27)

Query: 1   LNFDELPEPP 10
           L+F +L E P
Sbjct: 969 LSFQDLSETP 978


>sp|GP_PUUMG|ENVELOPMENT polyprotein|Puumala virus (strain Bank vole/Russia/CG1820/1984)

Query: 1   LNFDELPEPP 10
           L+F +L E P
Sbjct: 969 LSFQDLSETP 978


>sp|GP_PUUMB|ENVELOPE glycoprotein|Puumala virus (strain Berkel)

Query: 1   LNFDELPEPP 10
           L+F +L E P
Sbjct: 154 LSFQDLSETP 163


>sp|REV_HV2CA|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 1  LNFDELPEPP 10
          L   +LP+PP
Sbjct: 79 LTIQDLPDPP 88


>sp|REV_HV2NZ|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 1  LNFDELPEPP 10
          L   +LP+PP
Sbjct: 79 LTIQDLPDPP 88


>sp|CVC1_VZVD|CAPSID vertex component 1|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2   NFDELPEPP 10
           +FD + EPP
Sbjct: 287 SFDGVLEPP 295




108|Sequence|536|545|LPEPPATFCD

>sp|POLG_TMUV|GENOME polyprotein|Tembusu virus (TMUV)

Query: 2    PEPPA 6
            PEPPA
Sbjct: 2886 PEPPA 2890


>sp|POLG_KOKV|GENOME polyprotein|Kokobera virus (KOKV)

Query: 2    PEPPA 6
            PEPPA
Sbjct: 2873 PEPPA 2877


>sp|POLG_JAEVM|GENOME polyprotein|Japanese encephalitis virus (strain M28)

Query: 2    PEPPA 6
            PEPPA
Sbjct: 2893 PEPPA 2897


>sp|POLG_JAEVJ|GENOME polyprotein|Japanese encephalitis virus (strain Jaoars982)

Query: 2    PEPPA 6
            PEPPA
Sbjct: 2893 PEPPA 2897


>sp|POLG_JAEV5|GENOME polyprotein|Japanese encephalitis virus (strain SA(v))

Query: 2    PEPPA 6
            PEPPA
Sbjct: 2893 PEPPA 2897


>sp|POLG_JAEV1|GENOME polyprotein|Japanese encephalitis virus (strain SA-14)

Query: 2    PEPPA 6
            PEPPA
Sbjct: 2893 PEPPA 2897


>sp|GB_EBVG|ENVELOPE glycoprotein B|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 2  PEPPAT 7
          P PPAT
Sbjct: 28 PAPPAT 33


>sp|GB_EBVA8|ENVELOPE glycoprotein B|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 2  PEPPAT 7
          P PPAT
Sbjct: 28 PAPPAT 33


>sp|GB_EBVB9|ENVELOPE glycoprotein B|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2  PEPPAT 7
          P PPAT
Sbjct: 28 PAPPAT 33


>sp|MCP_HHV7J|MAJOR capsid protein|Human herpesvirus 7 (strain JI)

Query: 3   EPPATF 8
           EPP+TF
Sbjct: 486 EPPSTF 491


>sp|DPOL_VZVO|DNA polymerase catalytic subunit|Varicella-zoster virus (strain Oka

Query: 1  LPEPPATFCD 10
          L  PP  +C+
Sbjct: 68 LSRPPKVYCN 77


>sp|DPOL_VZVD|DNA polymerase catalytic subunit|Varicella-zoster virus (strain

Query: 1  LPEPPATFCD 10
          L  PP  +C+
Sbjct: 68 LSRPPKVYCN 77


>sp|VU5_HHV7J|PROTEIN U5|Human herpesvirus 7 (strain JI)

Query: 1  LPEPPATFC 9
          + E PA FC
Sbjct: 91 IAESPAHFC 99


>sp|POLG_USUV|GENOME polyprotein|Usutu virus (USUV)

Query: 2    PEPPA 6
            PEPP+
Sbjct: 2895 PEPPS 2899


>sp|POLN_WEEV|POLYPROTEIN P1234|Western equine encephalitis virus (WEEV)

Query: 5   PATFCD 10
           PAT CD
Sbjct: 333 PATLCD 338


>sp|POLN_EEEV8|POLYPROTEIN P1234|Eastern equine encephalitis virus (strain

Query: 5   PATFCD 10
           PAT CD
Sbjct: 333 PATLCD 338


>sp|POLN_EEEV1|POLYPROTEIN P1234|Eastern equine encephalitis virus (strain

Query: 5   PATFCD 10
           PAT CD
Sbjct: 333 PATLCD 338


>sp|POLN_EEEVF|POLYPROTEIN P1234|Eastern equine encephalitis virus (strain

Query: 5   PATFCD 10
           PAT CD
Sbjct: 333 PATLCD 338


Query: 1    LPEPPAT 7
            +P PP T
Sbjct: 1682 IPSPPCT 1688


>sp|VE6_HPV14|PROTEIN E6|Human papillomavirus 14

Query: 2  PEPPATFCD 10
          P P +++CD
Sbjct: 15 PSPKSSYCD 23


>sp|POLN_EEVVM|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 5   PATFCD 10
           PAT CD
Sbjct: 335 PATLCD 340


>sp|POLN_EEVV3|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 5   PATFCD 10
           PAT CD
Sbjct: 335 PATLCD 340


>sp|POLN_EEVVP|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 5   PATFCD 10
           PAT CD
Sbjct: 335 PATLCD 340


>sp|POLN_ONNVI|POLYPROTEIN P1234|O'nyong-nyong virus (strain Igbo Ora)

Query: 5   PATFCD 10
           PAT CD
Sbjct: 335 PATICD 340


>sp|POLN_ONNVS|POLYPROTEIN P1234|O'nyong-nyong virus (strain SG650) (ONNV)

Query: 5   PATFCD 10
           PAT CD
Sbjct: 335 PATICD 340


>sp|POLN_ONNVG|POLYPROTEIN P1234|O'nyong-nyong virus (strain Gulu) (ONNV)

Query: 5   PATFCD 10
           PAT CD
Sbjct: 335 PATICD 340


>sp|CVC2_EBVG|CAPSID vertex component 2|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 4   PPATFCD 10
           PP TF D
Sbjct: 309 PPGTFAD 315


>sp|CVC2_EBVB9|CAPSID vertex component 2|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 4   PPATFCD 10
           PP TF D
Sbjct: 309 PPGTFAD 315


>sp|CVC2_EBVA8|CAPSID vertex component 2|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 4   PPATFCD 10
           PP TF D
Sbjct: 309 PPGTFAD 315


>sp|TERM_ADE02|PRETERMINAL protein|Human adenovirus C serotype 2

Query: 2   PEPPAT 7
           P PPAT
Sbjct: 279 PLPPAT 284


>sp|POLN_EEVVT|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 5   PATFCD 10
           PAT CD
Sbjct: 335 PATLCD 340


>sp|POLN_SAGV|POLYPROTEIN P1234|Sagiyama virus (SAGV)

Query: 5   PATFCD 10
           PAT CD
Sbjct: 334 PATICD 339


>sp|TERM_ADE05|PRETERMINAL protein|Human adenovirus C serotype 5

Query: 2   PEPPAT 7
           P PPAT
Sbjct: 279 PLPPAT 284


>sp|REV_HV2SB|PROTEIN Rev|Human immunodeficiency virus type 2

Query: 1  LPEPPAT 7
          LP+PP T
Sbjct: 84 LPDPPTT 90


>sp|R1A_CVHOC|REPLICASE polyprotein 1a|Human coronavirus OC43 (HCoV-OC43)

Query: 5    PATFC 9
            P TFC
Sbjct: 3001 PGTFC 3005


>sp|R1A_CVHN5|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N5)

Query: 5    PATFC 9
            P TFC
Sbjct: 3039 PGTFC 3043


>sp|R1A_CVHN2|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N2)

Query: 5    PATFC 9
            P TFC
Sbjct: 3059 PGTFC 3063


>sp|R1A_CVHN1|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N1)

Query: 5    PATFC 9
            P TFC
Sbjct: 3089 PGTFC 3093


>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)

Query: 5    PATFC 9
            P TFC
Sbjct: 3039 PGTFC 3043


>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)

Query: 5    PATFC 9
            P TFC
Sbjct: 3059 PGTFC 3063


>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)

Query: 5    PATFC 9
            P TFC
Sbjct: 3089 PGTFC 3093


>sp|POLN_GETV|POLYPROTEIN P1234|Getah virus (GETV)

Query: 5   PATFCD 10
           PAT CD
Sbjct: 334 PATICD 339


>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)

Query: 5    PATFC 9
            P TFC
Sbjct: 3001 PGTFC 3005


>sp|POLN_RRVN|POLYPROTEIN P1234|Ross river virus (strain NB5092)

Query: 5   PATFCD 10
           PAT CD
Sbjct: 333 PATICD 338


>sp|POLN_SINDV|POLYPROTEIN P1234|Sindbis virus (SINV)

Query: 5   PATFCD 10
           PAT CD
Sbjct: 336 PATICD 341


>sp|POLN_SINDO|POLYPROTEIN P1234|Sindbis virus subtype Ockelbo (strain

Query: 5   PATFCD 10
           PAT CD
Sbjct: 336 PATICD 341


>sp|POLN_CHIKS|POLYPROTEIN P1234|Chikungunya virus (strain S27-African prototype)

Query: 5   PATFCD 10
           PAT CD
Sbjct: 335 PATICD 340


>sp|POLN_CHIK3|POLYPROTEIN P1234|Chikungunya virus (strain 37997) (CHIKV)

Query: 5   PATFCD 10
           PAT CD
Sbjct: 335 PATICD 340


>sp|VSGP_TAFVC|PRE-SMALL/SECRETED glycoprotein|Tai Forest ebolavirus (strain Cote

Query: 1   LPEPPAT 7
           LP PP T
Sbjct: 327 LPSPPTT 333


>sp|TEG7_EBVG|TEGUMENT protein UL51 homolog|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 1  LPEPPATF 8
          LPE P TF
Sbjct: 26 LPEEPETF 33


>sp|TEG7_EBVB9|TEGUMENT protein UL51 homolog|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1  LPEPPATF 8
          LPE P TF
Sbjct: 26 LPEEPETF 33


>sp|TEG7_EBVA8|TEGUMENT protein UL51 homolog|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 1  LPEPPATF 8
          LPE P TF
Sbjct: 26 LPEEPETF 33


>sp|GP_CCHFI|ENVELOPMENT polyprotein|Crimean-Congo hemorrhagic fever virus (strain

Query: 2   PEPPAT 7
           P PPAT
Sbjct: 184 PTPPAT 189


>sp|PHOSP_CHAV|PHOSPHOPROTEIN virus (strain I653514) (CHPV)

Query: 1   LPEPPATFCD 10
           +PE PA   D
Sbjct: 211 IPEAPANLID 220


>sp|VGP_EBOZ5|ENVELOPE glycoprotein|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)

Query: 2   PEPPAT 7
           P+PP T
Sbjct: 375 PQPPTT 380


>sp|R1A_MERS1|REPLICASE polyprotein 1a|Middle East respiratory syndrome-related coronavirus

Query: 3    EPPATF 8
            EPP T+
Sbjct: 1835 EPPVTY 1840


>sp|R1AB_MERS1|REPLICASE polyprotein 1ab|Middle East respiratory syndrome-related coronavirus

Query: 3    EPPATF 8
            EPP T+
Sbjct: 1835 EPPVTY 1840


>sp|VP2_SVM10|MINOR capsid protein VP2|Sapporo virus (isolate

Query: 2   PEPPAT 7
           P PP+T
Sbjct: 159 PRPPST 164


>sp|NCAP_MABVM|NUCLEOPROTEIN Victoria marburgvirus (strain Musoke-80)

Query: 1   LPEPP 5
           +PEPP
Sbjct: 490 IPEPP 494


>sp|NCAP_MABVA|NUCLEOPROTEIN Victoria marburgvirus (strain Angola/2005)

Query: 1   LPEPP 5
           +PEPP
Sbjct: 490 IPEPP 494


>sp|SPIK1_ADE41|FIBER protein 1|Human adenovirus F serotype 41

Query: 2   PEPPATF 8
           P P ATF
Sbjct: 394 PSPNATF 400




109|Sequence|541|550|ATFCDPEEVE

>sp|UNG_EBVB9|URACIL-DNA glycosylase|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 1  ATFCDPEEVE 10
          A FCDP +++
Sbjct: 75 ARFCDPSDIK 84


>sp|UNG_HHV8P|URACIL-DNA glycosylase|Human herpesvirus 8 type P

Query: 4  CDPEEVE 10
          CDPE+++
Sbjct: 75 CDPEDIK 81


>sp|ENV_XMRV3|ENVELOPE glycoprotein|Xenotropic MuLV-related virus (isolate VP35)

Query: 5   DPEEVE 10
           DPEEVE
Sbjct: 637 DPEEVE 642


>sp|ENV_XMRV4|ENVELOPE glycoprotein|Xenotropic MuLV-related virus (isolate VP42)

Query: 5   DPEEVE 10
           DPEEVE
Sbjct: 637 DPEEVE 642


>sp|ENV_XMRV6|ENVELOPE glycoprotein|Xenotropic MuLV-related virus (isolate VP62)

Query: 5   DPEEVE 10
           DPEEVE
Sbjct: 637 DPEEVE 642


>sp|NEF_HV1M2|PROTEIN Nef|Human immunodeficiency virus type 1

Query: 5   DPEEVE 10
           DPEEVE
Sbjct: 144 DPEEVE 149


>sp|POLG_KFDV|GENOME polyprotein|Kyasanur forest disease virus (KFDV)

Query: 1    ATFCDPEEVE 10
            ATF  PE+V+
Sbjct: 1999 ATFYGPEQVK 2008


>sp|UNG_HHV7J|URACIL-DNA glycosylase|Human herpesvirus 7 (strain JI)

Query: 3  FCDPEEVE 10
           C PEE++
Sbjct: 77 LCSPEEIK 84


>sp|NEF_HV1VI|PROTEIN Nef|Human immunodeficiency virus type 1

Query: 5   DPEEVE 10
           DPEEVE
Sbjct: 149 DPEEVE 154


>sp|NEF_HV1MP|PROTEIN Nef|Human immunodeficiency virus type 1

Query: 5   DPEEVE 10
           DPEE+E
Sbjct: 144 DPEEIE 149


>sp|NEF_HV193|PROTEIN Nef|Human immunodeficiency virus type 1

Query: 5   DPEEVE 10
           DPEEVE
Sbjct: 152 DPEEVE 157


>sp|GCVK_HHV7J|PROBABLE ganciclovir kinase|Human herpesvirus 7 (strain JI)

Query: 1   ATFCDPEE 8
           + FC+PE+
Sbjct: 172 SQFCEPEK 179


>sp|VE1_HPV18|REPLICATION protein E1|Human papillomavirus type 18

Query: 1  ATFCDPEEVE 10
           TFC+  E+E
Sbjct: 55 GTFCEQAELE 64


>sp|UL52_HCMVA|PACKAGING protein UL32 homolog|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   FCDPE 7
           FCDP+
Sbjct: 569 FCDPQ 573


>sp|UL52_HCMVM|PACKAGING protein UL32 homolog|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   FCDPE 7
           FCDP+
Sbjct: 569 FCDPQ 573


>sp|VE2_HPV34|REGULATORY protein E2|Human papillomavirus type 34

Query: 4   CDPEE 8
           CDP+E
Sbjct: 237 CDPDE 241


>sp|POLG_HRV1B|GENOME polyprotein|Human rhinovirus 1B (HRV-1B)

Query: 1    ATFCDPE 7
            A  CDPE
Sbjct: 1906 AVGCDPE 1912


>sp|POLG_HRV1A|GENOME polyprotein|Human rhinovirus 1A (HRV-1A)

Query: 1    ATFCDPE 7
            A  CDPE
Sbjct: 1906 AVGCDPE 1912


>sp|POLG_HRV16|GENOME polyprotein|Human rhinovirus 16 (HRV-16)

Query: 1    ATFCDPE 7
            A  CDPE
Sbjct: 1902 AVGCDPE 1908


>sp|POLG_STEVM|GENOME polyprotein|St. louis encephalitis virus (strain

Query: 3   FCDPEEV 9
           +CD EEV
Sbjct: 189 WCDVEEV 195


>sp|POLG_ALKV|GENOME polyprotein|Alkhumra hemorrhagic fever virus (ALKV)

Query: 1    ATFCDPEEVE 10
            ATF  PE+++
Sbjct: 1999 ATFYGPEQMK 2008


>sp|TRM1_HHV6U|TRIPARTITE terminase subunit 1|Human herpesvirus 6A (strain Uganda-1102)

Query: 3  FCDP 6
          FCDP
Sbjct: 26 FCDP 29


>sp|TRM1_HHV6Z|TRIPARTITE terminase subunit 1|Human herpesvirus 6B (strain Z29)

Query: 3  FCDP 6
          FCDP
Sbjct: 26 FCDP 29


>sp|UL38_HHV6U|APOPTOSIS inhibitor U19|Human herpesvirus 6A (strain Uganda-1102)

Query: 2   TFCDPEE 8
           TFC P E
Sbjct: 209 TFCRPTE 215


>sp|POLG_HCVJP|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 4    CDPE 7
            CDPE
Sbjct: 2166 CDPE 2169


>sp|POLG_HCVJ8|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 4    CDPE 7
            CDPE
Sbjct: 2166 CDPE 2169


>sp|POLG_HCVJ6|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 4    CDPE 7
            CDPE
Sbjct: 2166 CDPE 2169


>sp|TRM1_HHV7J|TRIPARTITE terminase subunit 1|Human herpesvirus 7 (strain JI)

Query: 3  FCDP 6
          FCDP
Sbjct: 26 FCDP 29


>sp|TAX_HTL3P|PROTEIN Tax-3|Human T-cell leukemia virus 3

Query: 3   FCDPEEV 9
           FC PE++
Sbjct: 173 FCHPEQL 179


>sp|GB_HHV6U|ENVELOPE glycoprotein B|Human herpesvirus 6A (strain Uganda-1102)

Query: 3  FCDPE 7
          +CDP+
Sbjct: 21 YCDPD 25


>sp|NEF_HV1EL|PROTEIN Nef|Human immunodeficiency virus type 1

Query: 5   DPEEVE 10
           DP+EVE
Sbjct: 150 DPQEVE 155


>sp|GB_HHV6G|ENVELOPE glycoprotein B|Human herpesvirus 6A (strain GS)

Query: 3  FCDPE 7
          +CDP+
Sbjct: 21 YCDPD 25


>sp|TAX_HTL32|PROTEIN Tax-3|Human T-cell leukemia virus 3

Query: 3   FCDPEEV 9
           FC PE++
Sbjct: 173 FCHPEQL 179


>sp|PHOSP_PI3H4|PHOSPHOPROTEIN parainfluenza 3 virus (strain

Query: 1  ATFCDPE 7
          AT C PE
Sbjct: 59 ATICQPE 65


>sp|UNG_HHV11|URACIL-DNA glycosylase|Human herpesvirus 1 (strain 17)

Query: 3   FCDPEEV 9
           +C P+EV
Sbjct: 164 YCTPDEV 170


>sp|L_LYCVA|RNA-DIRECTED RNA polymerase L|Lymphocytic choriomeningitis virus (strain

Query: 5    DPEEV 9
            DPEEV
Sbjct: 1338 DPEEV 1342


>sp|GCVK_HHV6Z|PROBABLE ganciclovir kinase|Human herpesvirus 6B (strain Z29)

Query: 3   FCDPEE 8
           FC PE+
Sbjct: 191 FCQPEK 196


>sp|GCVK_HHV6U|PROBABLE ganciclovir kinase|Human herpesvirus 6A (strain Uganda-1102)

Query: 3   FCDPEE 8
           FC PE+
Sbjct: 190 FCQPEK 195


>sp|GP_HANTB|ENVELOPMENT polyprotein|Hantaan virus (strain B-1) (Korean

Query: 1   ATFCDP 6
           +TFC P
Sbjct: 133 STFCKP 138




110|Sequence|546|555|PEEVEGESLA

>sp|VE1_HPV57|REPLICATION protein E1|Human papillomavirus 57

Query: 1   PEEVEGE 7
           PEEV GE
Sbjct: 142 PEEVTGE 148


>sp|ENV_HV1YF|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 1   PEEVEG 6
           PEE EG
Sbjct: 709 PEETEG 714


>sp|PG125_VAR67|SCAFFOLD protein OPG125|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 3   EVEGESL 9
           E+EGE L
Sbjct: 109 EIEGEEL 115


>sp|PG125_VACCT|SCAFFOLD protein OPG125|Vaccinia virus (strain Tian Tan)

Query: 3   EVEGESL 9
           E+EGE L
Sbjct: 109 EIEGEEL 115


>sp|PG125_VACCC|SCAFFOLD protein OPG125|Vaccinia virus (strain Copenhagen) (VACV)

Query: 3   EVEGESL 9
           E+EGE L
Sbjct: 109 EIEGEEL 115


>sp|PG125_VACCA|SCAFFOLD protein OPG125|Vaccinia virus (strain Ankara) (VACV)

Query: 3   EVEGESL 9
           E+EGE L
Sbjct: 109 EIEGEEL 115


>sp|PG125_MONPV|SCAFFOLD protein OPG125|Monkeypox virus (MPXV)

Query: 3   EVEGESL 9
           E+EGE L
Sbjct: 109 EIEGEEL 115


>sp|D13_VARV|SCAFFOLD protein D13|Variola virus

Query: 3   EVEGESL 9
           E+EGE L
Sbjct: 109 EIEGEEL 115


>sp|POLG_TBEVH|GENOME polyprotein|Tick-borne encephalitis virus (strain Hypr)

Query: 1    PEEVEGE 7
            PEEV+G+
Sbjct: 1926 PEEVDGK 1932


>sp|POLG_OHFV|GENOME polyprotein|Omsk hemorrhagic fever virus (OHFV)

Query: 1    PEEVEGE 7
            PEEV+G+
Sbjct: 1926 PEEVDGK 1932


>sp|POLG_TBEVW|GENOME polyprotein|Tick-borne encephalitis virus European subtype

Query: 1    PEEVEGE 7
            PEEV+G+
Sbjct: 1926 PEEVDGK 1932


>sp|POLG_LIVK|GENOME polyprotein|Louping ill virus (isolate Grouses/Scotland/K/1980)

Query: 1    PEEVEGE 7
            PEEV+G+
Sbjct: 1926 PEEVDGK 1932


>sp|POLG_LIV|GENOME polyprotein|Louping ill virus (LIV)

Query: 1    PEEVEGE 7
            PEEV+G+
Sbjct: 1926 PEEVDGK 1932


>sp|POLG_KFDV|GENOME polyprotein|Kyasanur forest disease virus (KFDV)

Query: 1    PEEVEGE 7
            PEEV+G+
Sbjct: 1928 PEEVDGK 1934


>sp|POLG_ALKV|GENOME polyprotein|Alkhumra hemorrhagic fever virus (ALKV)

Query: 1    PEEVEGE 7
            PEEV+G+
Sbjct: 1928 PEEVDGK 1934


>sp|PRIM_HHV8P|DNA primase|Human herpesvirus 8 type P

Query: 1   PEEVEGESLA 10
           P+E  GE +A
Sbjct: 553 PDEWRGEDVA 562


>sp|POLG_TBEVS|GENOME polyprotein|Tick-borne encephalitis virus Far Eastern

Query: 1    PEEVEGE 7
            PEEV+G 
Sbjct: 1926 PEEVDGR 1932


>sp|POLG_SVM93|GENOME polyprotein|Sapporo virus (strain Human/United

Query: 1    PEEVEGESLA 10
            PEE  GE+ A
Sbjct: 1239 PEEQPGETHA 1248


>sp|POLG_SVSAP|GENOME polyprotein|Sapporo virus (isolate

Query: 1    PEEVEGESLA 10
            PEE  GE+ A
Sbjct: 1239 PEEQPGETHA 1248


>sp|POLG_LANVT|GENOME polyprotein|Langat virus (strain TP21)

Query: 1    PEEVEGE 7
            PEEV+G 
Sbjct: 1926 PEEVDGR 1932


>sp|POLG_POWVL|GENOME polyprotein|Tick-borne powassan virus (strain LB)

Query: 1    PEEVEGE 7
            PEE++G+
Sbjct: 1927 PEEIDGK 1933




111|Sequence|551|560|GESLAAPQTP

>sp|UL32_HHV7J|PACKAGING protein UL32|Human herpesvirus 7 (strain JI)

Query: 5   AAPQTP 10
           AAP+TP
Sbjct: 104 AAPRTP 109


>sp|TRM2_HHV11|TRIPARTITE terminase subunit 2|Human herpesvirus 1 (strain 17)

Query: 2  ESLAAPQTP 10
          +  AAPQTP
Sbjct: 89 DDAAAPQTP 97


>sp|LTP_EBVG|LARGE tegument protein deneddylase|Epstein-Barr virus (strain GD1)

Query: 5   AAPQTP 10
           AAPQTP
Sbjct: 417 AAPQTP 422


>sp|LTP_EBVA8|LARGE tegument protein deneddylase|Epstein-Barr virus (strain AG876)

Query: 5   AAPQTP 10
           AAPQTP
Sbjct: 412 AAPQTP 417


>sp|LTP_EBVB9|LARGE tegument protein deneddylase|Epstein-Barr virus (strain B95-8)

Query: 5   AAPQTP 10
           AAPQTP
Sbjct: 407 AAPQTP 412


>sp|UL87_EBVB9|LATE gene expression regulator BcRF1|Epstein-Barr virus (strain B95-8)

Query: 5  AAPQTP 10
          A+PQTP
Sbjct: 68 ASPQTP 73


>sp|SHUT_ADE12|SHUTOFF protein|Human adenovirus A serotype 12

Query: 2  ESLAAPQTP 10
          ESL AP  P
Sbjct: 8  ESLTAPTAP 16




112|Sequence|556|565|APQTPTLPSA

>sp|POLG_DEN3I|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1   APQTPTLPSA 10
            P TP  PSA
Sbjct: 910 GPNTPECPSA 919


>sp|POLG_DEN3P|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1   APQTPTLPSA 10
            P TP  PSA
Sbjct: 910 GPSTPECPSA 919


>sp|POLG_DEN3C|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1   APQTPTLPSA 10
            P TP  PSA
Sbjct: 910 GPSTPECPSA 919


>sp|POLG_DEN3S|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1   APQTPTLPSA 10
            P TP  PSA
Sbjct: 910 GPNTPECPSA 919


>sp|POLG_DEN3M|GENOME polyprotein|Dengue virus type 3 (strain

Query: 1   APQTPTLPSA 10
            P TP  PSA
Sbjct: 910 GPNTPECPSA 919


>sp|VU26_HHV6U|PROTEIN U26|Human herpesvirus 6A (strain Uganda-1102)

Query: 1  APQTPTLPSA 10
          AP+ P+L SA
Sbjct: 73 APKLPSLLSA 82


>sp|VU26_HHV6G|PROTEIN U26|Human herpesvirus 6A (strain GS)

Query: 1  APQTPTLPSA 10
          AP+ P+L SA
Sbjct: 73 APKLPSLLSA 82


>sp|VE2_HPV42|REGULATORY protein E2|Human papillomavirus 42

Query: 2   PQTPTLPSA 10
           P  P++PSA
Sbjct: 276 PSIPSIPSA 284


>sp|GQ2_HHV6Z|GLYCOPROTEIN Q2|Human herpesvirus 6B (strain Z29)

Query: 2   PQTPTLPS 9
           P  PTLPS
Sbjct: 168 PSDPTLPS 175


>sp|POLG_STEVM|GENOME polyprotein|St. louis encephalitis virus (strain

Query: 1   APQTPTL 7
           AP+ PTL
Sbjct: 323 APEKPTL 329


>sp|GQ1_HHV6Z|GLYCOPROTEIN Q1|Human herpesvirus 6B (strain Z29)

Query: 2   PQTPTLPS 9
           P  PTLPS
Sbjct: 602 PSDPTLPS 609


>sp|POL_HV2RO|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APQTPTLPSA 10
           APQ P  PS+
Sbjct: 442 APQLPRGPSS 451


>sp|POL_HV2G1|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APQTPTLPSA 10
           APQ P  PS+
Sbjct: 443 APQLPRGPSS 452


>sp|POLG_CXB4E|GENOME polyprotein|Coxsackievirus B4 (strain E2) (CVB4)

Query: 1    APQTPTLPS 9
            AP+TP  P+
Sbjct: 1440 APETPPPPA 1448


>sp|POL_HV2D1|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APQTPTLPSA 10
           APQ P  PS+
Sbjct: 441 APQLPRGPSS 450


>sp|J1I_HCMVA|UNCHARACTERIZED protein HKRFX|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   APQTPTLPS 9
            PQ P LPS
Sbjct: 215 CPQGPMLPS 223


>sp|POL_HV2CA|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APQTPTLPSA 10
           APQ P  PS+
Sbjct: 442 APQFPRGPSS 451


>sp|DPOL_HHV8P|DNA polymerase catalytic subunit|Human herpesvirus 8 type P

Query: 3  QTPTLPS 9
          Q+PT+PS
Sbjct: 26 QSPTVPS 32


>sp|MCP_HHV6Z|MAJOR capsid protein|Human herpesvirus 6B (strain Z29)

Query: 2   PQTPTLPS 9
           P  PTLP+
Sbjct: 524 PDNPTLPT 531


>sp|MCP_HHV6U|MAJOR capsid protein|Human herpesvirus 6A (strain Uganda-1102)

Query: 2   PQTPTLPS 9
           P  PTLP+
Sbjct: 524 PDNPTLPT 531


>sp|VE4_HPV04|PROTEIN E4|Human papillomavirus 4

Query: 2  PQTPTLPS 9
          P TP LPS
Sbjct: 24 PATPKLPS 31


>sp|PKG3_ADE12|PACKAGING protein 3|Human adenovirus A serotype 12

Query: 2  PQTPTL 7
          PQ PTL
Sbjct: 32 PQCPTL 37


>sp|DPOL_HBVB6|PROTEIN P|Hepatitis B virus genotype B2

Query: 3  QTPTLPS 9
          QTP+ PS
Sbjct: 75 QTPSFPS 81




113|Sequence|561|570|TLPSALEELE

>sp|POLG_DEN1S|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2    LPSALEEL 9
            LP++LEEL
Sbjct: 1242 LPNSLEEL 1249


>sp|POLG_DEN1W|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2    LPSALEEL 9
            LP++LEEL
Sbjct: 1243 LPNSLEEL 1250


>sp|POLG_DEN1B|GENOME polyprotein|Dengue virus type 1 (strain

Query: 2    LPSALEEL 9
            LP++LEEL
Sbjct: 1243 LPNSLEEL 1250


>sp|L_MABVM|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Musoke-80)

Query: 1    TLPSALEELE 10
            TLP  LE+ E
Sbjct: 1134 TLPCLLEQFE 1143


>sp|R1A_CVHN5|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N5)

Query: 2  LPSALEEL 9
          LP A EEL
Sbjct: 21 LPDAAEEL 28


>sp|R1A_CVHN2|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N2)

Query: 2  LPSALEEL 9
          LP A EEL
Sbjct: 21 LPDAAEEL 28


>sp|R1A_CVHN1|REPLICASE polyprotein 1a|Human coronavirus HKU1 (isolate N1)

Query: 2  LPSALEEL 9
          LP A EEL
Sbjct: 21 LPDAAEEL 28


>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)

Query: 2  LPSALEEL 9
          LP A EEL
Sbjct: 21 LPDAAEEL 28


>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)

Query: 2  LPSALEEL 9
          LP A EEL
Sbjct: 21 LPDAAEEL 28


>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)

Query: 2  LPSALEEL 9
          LP A EEL
Sbjct: 21 LPDAAEEL 28


>sp|L_CCHFI|RNA-DIRECTED RNA polymerase L|Crimean-Congo hemorrhagic fever virus (strain

Query: 1   TLPSALEE 8
           TLP++LE+
Sbjct: 953 TLPTSLEQ 960


>sp|TEG4_VZVD|TEGUMENT protein UL21 homolog|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2   LPSALEEL 9
           LP +L+EL
Sbjct: 177 LPESLQEL 184


>sp|POLN_RUBVV|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336) (RUBV)

Query: 3   PSALEELE 10
           P+ALEE E
Sbjct: 902 PAALEEGE 909


>sp|POLN_RUBVT|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Therien) (RUBV)

Query: 3   PSALEELE 10
           P+ALEE E
Sbjct: 902 PAALEEGE 909


>sp|POLN_RUBVM|NON-STRUCTURAL polyprotein p200|Rubella virus (strain M33) (RUBV)

Query: 3   PSALEELE 10
           P+ALEE E
Sbjct: 902 PAALEEGE 909


>sp|POLN_RUBVR|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RA27/3 vaccine)

Query: 3   PSALEELE 10
           P+ALEE E
Sbjct: 902 PAALEEGE 909


>sp|POLN_RUBVD|NON-STRUCTURAL polyprotein p200|Rubella virus (strain Cendehill) (RUBV)

Query: 3   PSALEELE 10
           P+ALEE E
Sbjct: 902 PAALEEGE 909


>sp|POLN_RUBVO|NON-STRUCTURAL polyprotein p200|Rubella virus (strain TO-336 vaccine)

Query: 3   PSALEELE 10
           P+ALEE E
Sbjct: 902 PAALEEGE 909


>sp|POLN_RUBVN|NON-STRUCTURAL polyprotein p200|Rubella virus (strain RN-UK86) (RUBV)

Query: 3   PSALEELE 10
           P+ALEE E
Sbjct: 902 PAALEEGE 909




114|Sequence|566|575|LEELEQEQEP

>sp|POLG_WSLV|GENOME polyprotein|Wesselsbron virus (WSLV)

Query: 2    EELEQEQE 9
            E+LE EQE
Sbjct: 3045 EDLEDEQE 3052


>sp|GM_EBVG|ENVELOPE glycoprotein M|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 3   ELEQEQEP 10
           ELE E EP
Sbjct: 343 ELELESEP 350


>sp|GM_EBVB9|ENVELOPE glycoprotein M|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 3   ELEQEQEP 10
           ELE E EP
Sbjct: 343 ELELESEP 350


>sp|GM_EBVA8|ENVELOPE glycoprotein M|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 3   ELEQEQEP 10
           ELE E EP
Sbjct: 343 ELELESEP 350


>sp|POLG_POWVL|GENOME polyprotein|Tick-borne powassan virus (strain LB)

Query: 4   LEQEQEP 10
           ++QE+EP
Sbjct: 167 IDQEEEP 173


>sp|POLG_HCVJP|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 1    LEELEQEQEP 10
            + E+E ++EP
Sbjct: 2259 MTEVEDDREP 2268


>sp|POLG_HCVJ8|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 1    LEELEQEQEP 10
            + E+E ++EP
Sbjct: 2259 MTEVEDDREP 2268




115|Sequence|571|580|QEQEPEPHLL

>sp|P100_HHV6Z|LARGE structural phosphoprotein|Human herpesvirus 6B (strain Z29)

Query: 2   EQEPEPHLL 10
           EQEP P+L+
Sbjct: 640 EQEPLPNLM 648


>sp|P100_HHV6H|LARGE structural phosphoprotein|Human herpesvirus 6B (HHV-6 variant

Query: 2   EQEPEPHLL 10
           EQEP P+L+
Sbjct: 640 EQEPLPNLM 648


>sp|NS1_HBOC1|INITIATOR protein NS1|Primate bocaparvovirus 1 (strain Human

Query: 1   QEQEPEP 7
           QEQEP+P
Sbjct: 729 QEQEPQP 735


>sp|TERM_ADE12|PRETERMINAL protein|Human adenovirus A serotype 12

Query: 3  QEPEPHLL 10
          +EP PH L
Sbjct: 42 REPPPHFL 49


>sp|NSP1_ROTHT|NON-STRUCTURAL protein 1|Rotavirus A (strain RVA/Human/United

Query: 4  EPEPHLL 10
          + EPHLL
Sbjct: 75 DSEPHLL 81


>sp|NSP1_ROTHM|NON-STRUCTURAL protein 1|Rotavirus A (strain

Query: 4  EPEPHLL 10
          + EPHLL
Sbjct: 75 DSEPHLL 81


>sp|NSP1_ROTAD|NON-STRUCTURAL protein 1|Rotavirus A (strain RVA/Human/United

Query: 4  EPEPHLL 10
          + EPHLL
Sbjct: 75 DSEPHLL 81


>sp|NSP1_ROTH7|NON-STRUCTURAL protein 1|Rotavirus A (isolate RVA/Human/United

Query: 4  EPEPHLL 10
          + EPHLL
Sbjct: 75 DEEPHLL 81


>sp|POLG_LORDV|GENOME polyprotein|Lordsdale virus (strain GII/Human/United

Query: 5    PEPHL 9
            PEPHL
Sbjct: 1456 PEPHL 1460


>sp|NSP1_ROTHW|NON-STRUCTURAL protein 1|Rotavirus A (strain RVA/Human/United

Query: 4  EPEPHLL 10
          + EPHLL
Sbjct: 75 DDEPHLL 81


>sp|NSP1_ROTHU|NON-STRUCTURAL protein 1|Rotavirus A (isolate

Query: 4  EPEPHLL 10
          + EPHLL
Sbjct: 75 DDEPHLL 81


>sp|L_ABLVH|LARGE structural protein|Australian bat lyssavirus (isolate

Query: 4  EPEPHL 9
          EPEP L
Sbjct: 16 EPEPEL 21


>sp|NS1A_HASV4|NON-STRUCTURAL polyprotein 1A|Human astrovirus-4 (HAstV-4)

Query: 1   QEQEPEPH 8
           Q+ EP+P+
Sbjct: 803 QKNEPQPY 810


>sp|NSP1_ROTH3|NON-STRUCTURAL protein 1|Rotavirus A (strain RVA/Human/Japan/AU-1/1982/G3P3[9])

Query: 4  EPEPHLL 10
          + EPHLL
Sbjct: 75 DEEPHLL 81


>sp|NS1A_HASV1|NON-STRUCTURAL polyprotein 1A|Human astrovirus-1 (HAstV-1)

Query: 1   QEQEPEPH 8
           Q+ EP+P+
Sbjct: 818 QKSEPQPY 825


>sp|L_ABLVB|LARGE structural protein|Australian bat lyssavirus (isolate

Query: 4  EPEPHL 9
          EPEP L
Sbjct: 16 EPEPEL 21


>sp|TERM_ADE02|PRETERMINAL protein|Human adenovirus C serotype 2

Query: 3  QEPEPHLL 10
          ++P PH L
Sbjct: 77 RQPPPHFL 84


>sp|TERM_ADE07|PRETERMINAL protein|Human adenovirus B serotype 7

Query: 3  QEPEPHLL 10
          ++P PH L
Sbjct: 59 RQPSPHFL 66


>sp|NS1AB_HASV4|NON-STRUCTURAL polyprotein 1AB|Human astrovirus-4 (HAstV-4)

Query: 1   QEQEPEPH 8
           Q+ EP+P+
Sbjct: 803 QKNEPQPY 810


>sp|TERM_ADE05|PRETERMINAL protein|Human adenovirus C serotype 5

Query: 3  QEPEPHLL 10
          ++P PH L
Sbjct: 77 RQPPPHFL 84


>sp|NCAP_PI3H4|NUCLEOPROTEIN parainfluenza 3 virus (strain

Query: 1   QEQEPEPH 8
           QEQ+ EP 
Sbjct: 433 QEQDGEPQ 440


>sp|TERM_ADE40|PRETERMINAL protein|Human adenovirus F serotype 40

Query: 3  QEPEPHLL 10
          +EP PH L
Sbjct: 77 REPPPHFL 84


>sp|NS1AB_HASV1|NON-STRUCTURAL polyprotein 1AB|Human astrovirus-1 (HAstV-1)

Query: 1   QEQEPEPH 8
           Q+ EP+P+
Sbjct: 818 QKSEPQPY 825


>sp|NCAP_HENDH|NUCLEOPROTEIN virus (isolate Horse/Autralia/Hendra/1994)

Query: 2   EQEPEP 7
           +QEP+P
Sbjct: 515 DQEPKP 520




116|Sequence|576|585|EPHLLTNGET

>sp|GP_TULV|ENVELOPMENT polyprotein|Tula orthohantavirus (TULV) (Tula virus)

Query: 1   EPHLLTN 7
           EPH+ TN
Sbjct: 935 EPHITTN 941


>sp|SPIKE_CVHNL|SPIKE glycoprotein|Human coronavirus NL63 (HCoV-NL63)

Query: 4   LLTNGET 10
           LLTNG T
Sbjct: 237 LLTNGST 243


>sp|POLN_EEVV3|POLYPROTEIN P1234|Venezuelan equine encephalitis virus (strain

Query: 1    EPHLLTNGET 10
            +P L+T GET
Sbjct: 1677 QPTLITVGET 1686


>sp|GLYC_LYCVA|PRE-GLYCOPROTEIN polyprotein GP complex|Lymphocytic choriomeningitis virus (strain

Query: 1   EPHLLTN 7
           +PH LTN
Sbjct: 471 KPHRLTN 477


>sp|GLYC_LYCVW|PRE-GLYCOPROTEIN polyprotein GP complex|Lymphocytic choriomeningitis virus (strain

Query: 1   EPHLLTN 7
           +PH LTN
Sbjct: 471 KPHRLTN 477


>sp|HEPA_HHV8P|DNA helicase/primase complex-associated protein|Human herpesvirus 8

Query: 1   EPHLLTN 7
           EPH+LT+
Sbjct: 307 EPHILTH 313


>sp|POLG_DEN2Q|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    EPHLLTNGE 9
            +P +LT+GE
Sbjct: 1905 KPVILTDGE 1913


>sp|VGP_EBORR|ENVELOPE glycoprotein|Reston ebolavirus (strain Reston-89) (REBOV)

Query: 5   LTNGET 10
           LTNGET
Sbjct: 368 LTNGET 373


>sp|VGP_EBORE|ENVELOPE glycoprotein|Reston ebolavirus (strain Philippines-96) (REBOV)

Query: 5   LTNGET 10
           LTNGET
Sbjct: 368 LTNGET 373


>sp|VGP_EBORS|ENVELOPE glycoprotein|Reston ebolavirus (strain Siena/Philippine-92) (REBOV)

Query: 5   LTNGET 10
           LTNGET
Sbjct: 368 LTNGET 373


>sp|UL87_HHV6Z|PROTEIN U58|Human herpesvirus 6B (strain Z29)

Query: 3   HLLTNG 8
           HL++NG
Sbjct: 665 HLISNG 670


>sp|UL87_HHV6U|PROTEIN U58|Human herpesvirus 6A (strain Uganda-1102)

Query: 3   HLLTNG 8
           HL++NG
Sbjct: 665 HLISNG 670


>sp|POLG_DEN27|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    EPHLLTNGE 9
            +P +LT+GE
Sbjct: 1905 KPVILTDGE 1913


>sp|POLG_DEN2T|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    EPHLLTNGE 9
            +P +LT+GE
Sbjct: 1495 KPVILTDGE 1503


>sp|POLG_DEN26|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    EPHLLTNGE 9
            +P +LT+GE
Sbjct: 1905 KPVILTDGE 1913


>sp|POLG_DEN2P|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    EPHLLTNGE 9
            +P +LT+GE
Sbjct: 1905 KPVILTDGE 1913


>sp|POLG_DEN2N|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    EPHLLTNGE 9
            +P +LT+GE
Sbjct: 1905 KPVILTDGE 1913


>sp|POLG_DEN2J|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    EPHLLTNGE 9
            +P +LT+GE
Sbjct: 1905 KPVILTDGE 1913


>sp|POLG_DEN28|GENOME polyprotein|Dengue virus type 2 (isolate

Query: 1    EPHLLTNGE 9
            +P +LT+GE
Sbjct: 1905 KPVILTDGE 1913


>sp|ENV_HV1SC|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 1

Query: 3   HLLTNG 8
           HLL NG
Sbjct: 258 HLLLNG 263




117|Sequence|581|590|TNGETTQKEG

>sp|UL119_HCMVM|VIRAL Fc-gamma receptor-like protein UL119|Human cytomegalovirus

Query: 5  TTQKEG 10
          TTQKEG
Sbjct: 71 TTQKEG 76


>sp|UL119_HCMVA|VIRAL Fc-gamma receptor-like protein UL119|Human cytomegalovirus

Query: 5  TTQKEG 10
          TTQKEG
Sbjct: 71 TTQKEG 76


>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)

Query: 2    NGETTQKEG 10
            +GE   KEG
Sbjct: 6597 DGENVSKEG 6605


>sp|PB1F2_I78A8|PROTEIN PB1-F2|Influenza A virus (strain A/Memphis/18/1978

Query: 2  NGETTQKEG 10
          NG+ TQK G
Sbjct: 23 NGQQTQKLG 31


>sp|PB1F2_I78A7|PROTEIN PB1-F2|Influenza A virus (strain A/Memphis/2/1978

Query: 2  NGETTQKEG 10
          NG+ TQK G
Sbjct: 23 NGQQTQKLG 31


>sp|POL_HV2D2|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   TNGETTQKE 9
            +GETT++E
Sbjct: 490 ADGETTERE 498


>sp|PB1F2_I59A0|PROTEIN PB1-F2|Influenza A virus (strain A/Chicken/Scotland/1959

Query: 2  NGETTQKEG 10
          NG+ TQK G
Sbjct: 23 NGQQTQKLG 31


>sp|UL87_HHV7J|PROTEIN U58|Human herpesvirus 7 (strain JI)

Query: 1   TNGETT 6
           T+GETT
Sbjct: 423 THGETT 428




118|Sequence|586|595|TQKEGTQASE

 ***** No hits found ******


119|Sequence|591|600|TQASEGYFSQ

>sp|MCP_HHV2H|MAJOR capsid protein|Human herpesvirus 2 (strain HG52)

Query: 2    QASEGYF 8
            +ASE YF
Sbjct: 1068 RASEAYF 1074


>sp|MCP_HHV11|MAJOR capsid protein|Human herpesvirus 1 (strain 17)

Query: 2    QASEGYF 8
            +ASE YF
Sbjct: 1068 RASEAYF 1074


>sp|MCP_VZVD|MAJOR capsid protein|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 2    QASEGYF 8
            +ASE YF
Sbjct: 1087 RASESYF 1093




120|Sequence|596|605|GYFSQSQEEE

>sp|POLG_HRV15|GENOME polyprotein|Human rhinovirus C (strain C15)

Query: 2    YFSQSQEE 9
            YF+QSQ E
Sbjct: 1688 YFAQSQGE 1695


>sp|POLG_POL1M|GENOME polyprotein|Poliovirus type 1 (strain Mahoney)

Query: 2    YFSQSQEE 9
            YF+QSQ E
Sbjct: 1743 YFTQSQGE 1750


>sp|POLG_POL2W|GENOME polyprotein|Poliovirus type 2 (strain W-2)

Query: 2    YFSQSQEE 9
            YF+QSQ E
Sbjct: 1741 YFTQSQGE 1748


>sp|POLG_POL1S|GENOME polyprotein|Poliovirus type 1 (strain Sabin)

Query: 2    YFSQSQEE 9
            YF+QSQ E
Sbjct: 1743 YFTQSQGE 1750


>sp|POLG_POL2L|GENOME polyprotein|Poliovirus type 2 (strain Lansing)

Query: 2    YFSQSQEE 9
            YF+QSQ E
Sbjct: 1741 YFTQSQGE 1748


>sp|POLG_POL32|GENOME polyprotein|Poliovirus type 3 (strain 23127)

Query: 2    YFSQSQEE 9
            YF+QSQ E
Sbjct: 1740 YFTQSQGE 1747


>sp|POLG_CXA24|GENOME polyprotein|Coxsackievirus A24 (strain EH24/70)

Query: 2    YFSQSQEE 9
            YF+QSQ E
Sbjct: 1748 YFTQSQGE 1755


>sp|POLG_POL3L|GENOME polyprotein|Poliovirus type 3 (strains P3/Leon/37

Query: 2    YFSQSQEE 9
            YF+QSQ E
Sbjct: 1740 YFTQSQGE 1747


>sp|ORF4A_MERS1|NON-STRUCTURAL protein ORF4a|Middle East respiratory syndrome-related coronavirus

Query: 3   FSQSQEEE 10
           F+QS+EEE
Sbjct: 98  FAQSEEEE 105


>sp|POLG_CXA21|GENOME polyprotein|Coxsackievirus A21 (strain Coe)

Query: 2    YFSQSQEE 9
            YF+Q+Q E
Sbjct: 1740 YFTQNQGE 1747


>sp|DNLI_MONPV|DNA ligase|Monkeypox virus (MPXV)

Query: 3  FSQSQEE 9
          F QSQE+
Sbjct: 70 FKQSQED 76


>sp|L_RVFV|RNA-DIRECTED RNA polymerase L|Rift valley fever virus (RVFV)

Query: 1   GYFSQSQEE 9
           GYF   +EE
Sbjct: 759 GYFKNKEEE 767


>sp|DNLI_VACCC|DNA ligase|Vaccinia virus (strain Copenhagen) (VACV)

Query: 3  FSQSQEE 9
          F QSQE+
Sbjct: 68 FKQSQED 74


>sp|DNLI_VACCA|DNA ligase|Vaccinia virus (strain Ankara) (VACV)

Query: 3  FSQSQEE 9
          F QSQE+
Sbjct: 68 FKQSQED 74


>sp|L_RVFVZ|RNA-DIRECTED RNA polymerase L|Rift valley fever virus (strain

Query: 1   GYFSQSQEE 9
           GYF   +EE
Sbjct: 759 GYFKNKEEE 767




121|Sequence|601|610|SQEEEFAQSE

>sp|L_VSIVM|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    SQEEEFAQSE 10
            S E+EFA+++
Sbjct: 1867 SSEQEFARAK 1876


>sp|L_VSIVA|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    SQEEEFAQSE 10
            S E+EFA+++
Sbjct: 1867 SSEQEFARAK 1876


>sp|L_VSIVN|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    SQEEEFAQS 9
            S E+EFA++
Sbjct: 1867 SSEQEFARA 1875


>sp|L_VSIVC|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    SQEEEFAQS 9
            S E+EFA++
Sbjct: 1867 SSEQEFARA 1875


>sp|L_VSIVS|RNA-DIRECTED RNA polymerase L|Vesicular stomatitis Indiana virus (strain

Query: 1    SQEEEFAQSE 10
            S E+EFA+++
Sbjct: 1867 SSEKEFARAK 1876




122|Sequence|606|615|FAQSEELCAK

>sp|VP7_ROTGI|OUTER capsid glycoprotein VP7|Rotavirus B (isolate RVB/Rat/United

Query: 1   FAQSEELCAK 10
           F QSE  C K
Sbjct: 97  FLQSENECVK 106


>sp|HEMA_INCYA|HEMAGGLUTININ-ESTERASE-FUSION glycoprotein|Influenza C virus (strain C/Yamagata/10/1981)

Query: 4   SEELCAK 10
           SEE+C K
Sbjct: 193 SEEICGK 199


>sp|ORF4A_MERS1|NON-STRUCTURAL protein ORF4a|Middle East respiratory syndrome-related coronavirus

Query: 1   FAQSEE 6
           FAQSEE
Sbjct: 98  FAQSEE 103


>sp|VPK_HHV8P|VIRAL protein kinase|Human herpesvirus 8 type P

Query: 4   SEELCAK 10
           SE+LC K
Sbjct: 102 SEDLCVK 108


>sp|PAX_I72A2|PROTEIN PA-X|Influenza A virus (strain A/Udorn/307/1972

Query: 3   QSEELCA 9
           +S+ELCA
Sbjct: 206 KSQELCA 212




123|Sequence|611|620|ELCAKAPPPV

>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 2    LCAKAPP 8
            +CAK+PP
Sbjct: 5703 VCAKSPP 5709


>sp|SPIKE_CVHN5|SPIKE glycoprotein|Human coronavirus HKU1 (isolate N5)

Query: 3   CAKAPPP 9
           CAK+ PP
Sbjct: 485 CAKSKPP 491


>sp|VE2_HPV34|REGULATORY protein E2|Human papillomavirus type 34

Query: 3   CAKAPPPV 10
           CAK PP +
Sbjct: 329 CAKIPPTI 336


>sp|POLG_WSLV|GENOME polyprotein|Wesselsbron virus (WSLV)

Query: 5    KAPPP 9
            KAPPP
Sbjct: 2862 KAPPP 2866


>sp|POLG_HCVJP|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1601 AKAPPP 1606


>sp|POLG_HCVJ8|GENOME polyprotein|Hepatitis C virus genotype 2b

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1601 AKAPPP 1606


>sp|PG083_VARV|CORE protease OPG082|Variola virus

Query: 2   LCAKAPP 8
           LC + PP
Sbjct: 338 LCTRTPP 344


>sp|PG083_VAR67|CORE protease OPG082|Variola virus (isolate Human/India/Ind3/1967)

Query: 2   LCAKAPP 8
           LC + PP
Sbjct: 338 LCTRTPP 344


>sp|PG083_VACCC|CORE protease OPG082|Vaccinia virus (strain Copenhagen) (VACV)

Query: 2   LCAKAPP 8
           LC + PP
Sbjct: 338 LCTRTPP 344


>sp|POLG_HCVH9|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1597 AKAPPP 1602


>sp|POLG_HCVVA|GENOME polyprotein|Hepatitis C virus genotype 2k

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1601 AKAPPP 1606


>sp|POLG_HCVVP|GENOME polyprotein|Hepatitis C virus genotype 6h

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1598 AKAPPP 1603


>sp|POLG_HCV6A|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1602 AKAPPP 1607


>sp|POLG_HCVVO|GENOME polyprotein|Hepatitis C virus genotype 6k

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1599 AKAPPP 1604


>sp|POLG_HCVT5|GENOME polyprotein|Hepatitis C virus genotype 6b

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1602 AKAPPP 1607


>sp|POLG_HCVJ6|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1601 AKAPPP 1606


>sp|POLG_HCVVN|GENOME polyprotein|Hepatitis C virus genotype 6d

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1595 AKAPPP 1600


>sp|POLG_HCVJL|GENOME polyprotein|Hepatitis C virus genotype 6g

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1601 AKAPPP 1606


>sp|ST_POVWU|SMALL t antigen|WU polyomavirus (WUPyV)

Query: 1  ELCAKAPP 8
          ELC   PP
Sbjct: 89 ELCCNFPP 96


>sp|POLG_HCVEV|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1598 AKAPPP 1603


>sp|POLG_HCVEU|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1601 AKAPPP 1606


>sp|POLG_HCVSA|GENOME polyprotein|Hepatitis C virus genotype 5a

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1598 AKAPPP 1603


>sp|POLG_HCVBB|GENOME polyprotein|Hepatitis C virus genotype 2c

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1601 AKAPPP 1606


>sp|POLG_HCVJF|GENOME polyprotein|Hepatitis C virus genotype 2a

Query: 4    AKAPPP 9
            AKAPPP
Sbjct: 1601 AKAPPP 1606


>sp|L_EBORR|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Reston-89) (REBOV)

Query: 3    CAKAPPP 9
            C K+P P
Sbjct: 1686 CGKSPKP 1692


>sp|L_EBORE|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Philippines-96) (REBOV)

Query: 3    CAKAPPP 9
            C K+P P
Sbjct: 1686 CGKSPKP 1692


>sp|VE2_HPV13|REGULATORY protein E2|Human papillomavirus 13

Query: 1   ELCAKAPP 8
           E C +APP
Sbjct: 232 EECVQAPP 239


>sp|LT_POVWU|LARGE T antigen|WU polyomavirus (WUPyV)

Query: 3   CAKAPPP 9
           C++A PP
Sbjct: 135 CSQATPP 141


>sp|LT_POVK3|LARGE T antigen|KI polyomavirus (isolate Stockholm 380)

Query: 3   CAKAPPP 9
           C++A PP
Sbjct: 129 CSQATPP 135


>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)

Query: 4    AKAPP 8
            AKAPP
Sbjct: 6037 AKAPP 6041


>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)

Query: 4    AKAPP 8
            AKAPP
Sbjct: 6075 AKAPP 6079


>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)

Query: 4    AKAPP 8
            AKAPP
Sbjct: 6095 AKAPP 6099


>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)

Query: 4    AKAPP 8
            AKAPP
Sbjct: 6125 AKAPP 6129


>sp|LT_POVKI|LARGE T antigen|KI polyomavirus (isolate Stockholm 350)

Query: 3   CAKAPPP 9
           C++A PP
Sbjct: 129 CSQATPP 135


>sp|LT_POVK6|LARGE T antigen|KI polyomavirus (isolate Stockholm 60)

Query: 3   CAKAPPP 9
           C++A PP
Sbjct: 129 CSQATPP 135


>sp|POLG_HCVIN|GENOME polyprotein|Hepatitis C virus genotype 1c

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 ARAPPP 1602


>sp|POLG_HCVTW|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 AQAPPP 1602


>sp|POLG_HCVR6|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 AQAPPP 1602


>sp|POLG_HCVNZ|GENOME polyprotein|Hepatitis C virus genotype 3a

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1603 AQAPPP 1608


>sp|POLG_HCVJT|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 AQAPPP 1602


>sp|POLG_HCVJ4|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 AQAPPP 1602


>sp|POLG_HCVJ1|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 AQAPPP 1602


>sp|POLG_HCVCO|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 AQAPPP 1602


>sp|POLG_HCV77|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 AQAPPP 1602


>sp|POLG_HCVBK|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 AQAPPP 1602


>sp|POLG_HCVK3|GENOME polyprotein|Hepatitis C virus genotype 3a

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1603 AQAPPP 1608


>sp|POLG_HCV1|GENOME polyprotein|Hepatitis C virus genotype 1a

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 AQAPPP 1602


>sp|POLG_HCVJA|GENOME polyprotein|Hepatitis C virus genotype 1b

Query: 4    AKAPPP 9
            A+APPP
Sbjct: 1597 AQAPPP 1602


>sp|U150A_HCMVM|UNCHARACTERIZED protein UL150A|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2  LCAKAP 7
          LC KAP
Sbjct: 55 LCGKAP 60


>sp|VE8E2_HPV13|PROTEIN E8^E2C|Human papillomavirus 13

Query: 1  ELCAKAPP 8
          E C +APP
Sbjct: 42 EECVQAPP 49


>sp|VGP_MABVM|ENVELOPE glycoprotein|Lake Victoria marburgvirus (strain Musoke-80)

Query: 4   AKAPPPV 10
           +K PPP+
Sbjct: 229 SKIPPPL 235


>sp|POLG_LORDV|GENOME polyprotein|Lordsdale virus (strain GII/Human/United

Query: 2  LCAKAPPP 9
          L  K PPP
Sbjct: 64 LVKKIPPP 71




124|Sequence|616|625|APPPVFYNKP

>sp|NSP2_ROTHC|NON-STRUCTURAL protein 2|Rotavirus C (isolate RVC/Human/United

Query: 1  APPPVFYNK 9
          APPP F N+
Sbjct: 52 APPPEFRNR 60


>sp|L_HMPVC|RNA-DIRECTED RNA polymerase L|Human metapneumovirus (strain CAN97-83) (HMPV)

Query: 2    PPPVFYNK 9
            PPPVF  K
Sbjct: 1348 PPPVFQGK 1355


>sp|SHUT_HHV1K|VIRION host shutoff protein|Human herpesvirus 1 (strain KOS)

Query: 1   APPPVFY 7
           APPP FY
Sbjct: 473 APPPAFY 479


>sp|NSP2_ROTWI|NON-STRUCTURAL protein 2|Rotavirus A (isolate RVA/Human/United

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROTHW|NON-STRUCTURAL protein 2|Rotavirus A (strain RVA/Human/United

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROTHT|NON-STRUCTURAL protein 2|Rotavirus A (strain RVA/Human/United

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROTHP|NON-STRUCTURAL protein 2|Rotavirus A (strain RVA/Human/United

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROTHL|NON-STRUCTURAL protein 2|Rotavirus A (strain

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROTHK|NON-STRUCTURAL protein 2|Rotavirus A (strain RVA/Human/Japan/KU/1995/G1P1A[8])

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROTHD|NON-STRUCTURAL protein 2|Rotavirus A (strain RVA/Human/United

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROTH7|NON-STRUCTURAL protein 2|Rotavirus A (isolate RVA/Human/United

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROTH6|NON-STRUCTURAL protein 2|Rotavirus A (strain

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROTH3|NON-STRUCTURAL protein 2|Rotavirus A (strain RVA/Human/Japan/AU-1/1982/G3P3[9])

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROTAD|NON-STRUCTURAL protein 2|Rotavirus A (strain RVA/Human/United

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|NSP2_ROT41|NON-STRUCTURAL protein 2|Rotavirus A (isolate

Query: 1  APPPVFYNK 9
          APPP F  +
Sbjct: 52 APPPQFKKR 60


>sp|SHUT_HHV11|VIRION host shutoff protein|Human herpesvirus 1 (strain 17)

Query: 1   APPPVFY 7
           APPP FY
Sbjct: 473 APPPAFY 479


>sp|SHUT_HHV23|VIRION host shutoff protein|Human herpesvirus 2 (strain 333)

Query: 1   APPPVFY 7
           APPP FY
Sbjct: 476 APPPAFY 482


>sp|UL25_HHV6G|VIRION-PACKAGING protein UL25 homolog|Human herpesvirus 6A (strain GS)

Query: 5   VFYNKP 10
           VFYN+P
Sbjct: 164 VFYNEP 169


>sp|SHUT_HHV2H|VIRION host shutoff protein|Human herpesvirus 2 (strain HG52)

Query: 1   APPPVFY 7
           APPP FY
Sbjct: 476 APPPAFY 482


>sp|SHUT_HHV2G|VIRION host shutoff protein|Human herpesvirus 2 (strain G)

Query: 1   APPPVFY 7
           APPP FY
Sbjct: 476 APPPAFY 482


>sp|CVC2_HHV6Z|CAPSID vertex component 2|Human herpesvirus 6B (strain Z29)

Query: 5   VFYNKP 10
           VFYN+P
Sbjct: 164 VFYNEP 169


>sp|CVC2_HHV6U|CAPSID vertex component 2|Human herpesvirus 6A (strain Uganda-1102)

Query: 5   VFYNKP 10
           VFYN+P
Sbjct: 164 VFYNEP 169


>sp|VP2_SVM93|MINOR capsid protein VP2|Sapporo virus (strain Human/United

Query: 1   APPPVFYNKP 10
           APP   + KP
Sbjct: 138 APPTTKFGKP 147


>sp|DPOL_HHV8P|DNA polymerase catalytic subunit|Human herpesvirus 8 type P

Query: 1   APPPVFYNKP 10
           +P P FY+ P
Sbjct: 571 SPSPGFYDDP 580


>sp|POLG_SVSAP|GENOME polyprotein|Sapporo virus (isolate

Query: 1   APPPVFYNK 9
           APPP F  K
Sbjct: 724 APPPEFVGK 732


>sp|POLG_SVM93|GENOME polyprotein|Sapporo virus (strain Human/United

Query: 1   APPPVFYNK 9
           APPP F  K
Sbjct: 724 APPPEFVGK 732


>sp|POLN_HEVHY|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 3  PPVFYNKP 10
          P VF+N+P
Sbjct: 59 PEVFWNQP 66


>sp|RDRP_ROTH3|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 3   PPVFYNKP 10
           PPV  +KP
Sbjct: 439 PPVNVDKP 446


>sp|RDRP_ROT41|RNA-DIRECTED RNA polymerase|Rotavirus A (isolate

Query: 3   PPVFYNKP 10
           PPV  +KP
Sbjct: 439 PPVNVDKP 446


>sp|RDRP_ROTHL|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 3   PPVFYNKP 10
           PPV  +KP
Sbjct: 439 PPVNVDKP 446


>sp|R1A_CVHNL|REPLICASE polyprotein 1a|Human coronavirus NL63 (HCoV-NL63)

Query: 1    APPPVFYN 8
            +PP + YN
Sbjct: 2928 SPPTISYN 2935


>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 1    APPPVFYN 8
            +PP + YN
Sbjct: 2928 SPPTISYN 2935


>sp|NEC1_HCMVM|NUCLEAR egress protein 1|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 2   PPPVFYN 8
           PPP+F N
Sbjct: 365 PPPLFLN 371


>sp|RDRP_ROTHK|RNA-DIRECTED RNA polymerase|Rotavirus A (strain

Query: 3   PPVFYNKP 10
           PPV  +KP
Sbjct: 439 PPVNVDKP 446


>sp|POL_HV2EH|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 659 APPTNPYNSP 668


>sp|POL_HV2D2|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 661 APPTNPYNTP 670


>sp|POL_HV2SB|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 660 APPTNPYNTP 669


>sp|POL_HV2KR|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 661 APPTNPYNTP 670


>sp|POL_HV2G1|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 662 APPTNPYNTP 671


>sp|POL_HV2NZ|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 659 APPTNPYNTP 668


>sp|POL_HV2RO|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 662 APPTNPYNTP 671


>sp|POL_HV2CA|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 661 APPTNPYNTP 670


>sp|CAP3_ADE12|PRE-HEXON-LINKING protein IIIa|Human adenovirus A serotype 12

Query: 2   PPPVFY 7
           PPP FY
Sbjct: 400 PPPGFY 405


>sp|POL_HV2UC|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 661 APPTNPYNTP 670


>sp|POL_HV2ST|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 661 APPTNPYNTP 670


>sp|PG137_VARV|PROTEIN OPG137|Variola virus

Query: 2  PPPVF 6
          PPP F
Sbjct: 94 PPPTF 98


>sp|PG137_VAR67|PROTEIN OPG137|Variola virus (isolate Human/India/Ind3/1967) (VARV)

Query: 2  PPPVF 6
          PPP F
Sbjct: 94 PPPTF 98


>sp|PG137_VACCC|PROTEIN OPG137|Vaccinia virus (strain Copenhagen) (VACV)

Query: 2  PPPVF 6
          PPP F
Sbjct: 93 PPPTF 97


>sp|PG137_VACCA|PROTEIN OPG137|Vaccinia virus (strain Ankara) (VACV)

Query: 2  PPPVF 6
          PPP F
Sbjct: 93 PPPTF 97


>sp|PG137_MONPV|PROTEIN OPG137|Monkeypox virus (MPXV)

Query: 2  PPPVF 6
          PPP F
Sbjct: 93 PPPTF 97


>sp|NEC1_HCMVA|NUCLEAR egress protein 1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   PPPVFYN 8
           PPP+F N
Sbjct: 365 PPPLFLN 371


>sp|POL_HV2D1|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 660 APPTNPYNTP 669


>sp|POL_HV2BE|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 1   APPPVFYNKP 10
           APP   YN P
Sbjct: 661 APPTNPYNTP 670


>sp|ITP_EBVB9|INNER tegument protein|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2   PPPVFYNKP 10
           PPPVF   P
Sbjct: 963 PPPVFIPAP 971


>sp|GG_HHV2B|ENVELOPE glycoprotein G|Human herpesvirus 2 (strain B4327UR)

Query: 3   PPVFYNKP 10
           PPV+Y+ P
Sbjct: 232 PPVWYSAP 239


>sp|ITP_EBVG|INNER tegument protein|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 2   PPPVFYNKP 10
           PPPVF   P
Sbjct: 960 PPPVFTPAP 968


>sp|POLN_HEVMY|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 3  PPVFYNKP 10
          P VF+N P
Sbjct: 59 PEVFWNHP 66


>sp|POLN_HEVBU|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 3  PPVFYNKP 10
          P VF+N P
Sbjct: 59 PEVFWNHP 66


>sp|GG_HHV2H|ENVELOPE glycoprotein G|Human herpesvirus 2 (strain HG52)

Query: 3   PPVFYNKP 10
           PPV+Y+ P
Sbjct: 232 PPVWYSAP 239


>sp|CAP3_ADE05|PRE-HEXON-LINKING protein IIIa|Human adenovirus C serotype 5

Query: 2   PPPVFY 7
           PPP FY
Sbjct: 392 PPPGFY 397


>sp|CAP3_ADE02|PRE-HEXON-LINKING protein IIIa|Human adenovirus C serotype 2

Query: 2   PPPVFY 7
           PPP FY
Sbjct: 392 PPPGFY 397


>sp|POLN_HEVME|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 2

Query: 3  PPVFYNKP 10
          P VF+N P
Sbjct: 59 PEVFWNHP 66


>sp|ITP_EBVA8|INNER tegument protein|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 2   PPPVFYNKP 10
           PPPVF   P
Sbjct: 964 PPPVFTPAP 972


>sp|POLN_HEVCH|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 3  PPVFYNKP 10
          P VF+N P
Sbjct: 59 PEVFWNHP 66


>sp|POLN_HEVPA|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 1

Query: 3  PPVFYNKP 10
          P VF+N P
Sbjct: 59 PEVFWNHP 66


>sp|MATRX_MEASI|MATRIX protein|Measles virus (strain IP-3-Ca) (MeV)

Query: 5   VFYNKP 10
           VFYN P
Sbjct: 112 VFYNNP 117


>sp|POLN_HEVCT|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 4

Query: 2   PPPVFYNKP 10
           PPP   N P
Sbjct: 725 PPPAEVNTP 733


>sp|NCAP_CVHNL|NUCLEOPROTEIN coronavirus NL63 (HCoV-NL63)

Query: 2  PPPVFY 7
          PPP FY
Sbjct: 17 PPPSFY 22




125|Sequence|621|630|FYNKPPEIDI

>sp|UL13_HHV2H|SERINE/THREONINE-PROTEIN kinase UL13|Human herpesvirus 2 (strain HG52)

Query: 2   YNKPPEIDI 10
           YN+PPE+ +
Sbjct: 350 YNQPPELSV 358


>sp|UL13_HHV11|SERINE/THREONINE-PROTEIN kinase UL13|Human herpesvirus 1 (strain 17)

Query: 2   YNKPPEI 8
           YN+PPE+
Sbjct: 350 YNQPPEL 356


>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 2    YNKPPEIDI 10
            YNKP  +DI
Sbjct: 4496 YNKPTILDI 4504


>sp|VEMP_CVHOC|ENVELOPE small membrane protein|Human coronavirus OC43 (HCoV-OC43)

Query: 1  FYN--KPPEIDI 10
          FYN  KPP +D+
Sbjct: 70 FYNDVKPPVLDV 81


>sp|MATRX_MEASI|MATRIX protein|Measles virus (strain IP-3-Ca) (MeV)

Query: 1   FYNKPP 6
           FYN PP
Sbjct: 113 FYNNPP 118


>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)

Query: 2    YNKPPEIDI 10
            YN+P  +DI
Sbjct: 4521 YNRPTMLDI 4529


>sp|DPOL_ADE12|DNA polymerase|Human adenovirus A serotype 12

Query: 1   FYNKPPE 7
           FY+ PPE
Sbjct: 788 FYSPPPE 794


>sp|L_MABVR|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ravn-87)

Query: 1    FYNKPPEIDI 10
            F++KP ++D+
Sbjct: 1387 FFDKPLDVDL 1396


>sp|L_MABVO|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Ozolin-75)

Query: 1    FYNKPPEIDI 10
            F++KP ++D+
Sbjct: 1387 FFDKPLDVDL 1396


>sp|L_MABVA|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Angola/2005)

Query: 1    FYNKPPEIDI 10
            F++KP ++D+
Sbjct: 1387 FFDKPLDVDL 1396


>sp|L_MABVP|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Popp-67)

Query: 1    FYNKPPEIDI 10
            F++KP ++D+
Sbjct: 1387 FFDKPLDVDL 1396


>sp|UL13_VZVO|SERINE/THREONINE-PROTEIN kinase UL13 homolog|Varicella-zoster virus (strain Oka vaccine)

Query: 3   NKPPEI 8
           N+PPEI
Sbjct: 331 NQPPEI 336


Query: 2   YNKPP 6
           +NKPP
Sbjct: 98  FNKPP 102


>sp|UL13_VZVD|SERINE/THREONINE-PROTEIN kinase UL13 homolog|Varicella-zoster virus (strain Dumas) (HHV-3)

Query: 3   NKPPEI 8
           N+PPEI
Sbjct: 331 NQPPEI 336


Query: 2   YNKPP 6
           +NKPP
Sbjct: 98  FNKPP 102


>sp|VE1_HPV65|REPLICATION protein E1|Human papillomavirus 65

Query: 2  YNKPPE 7
          YNK PE
Sbjct: 79 YNKSPE 84


>sp|L_MUMPM|RNA-DIRECTED RNA polymerase L|Mumps virus genotype B (strain

Query: 2    YNKPPEI 8
            YN PP++
Sbjct: 1630 YNYPPKV 1636


>sp|L_MUMPJ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype A (strain

Query: 2    YNKPPEI 8
            YN PP++
Sbjct: 1630 YNYPPKV 1636


>sp|L_MUMPZ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype N (strain

Query: 2    YNKPPEI 8
            YN PP++
Sbjct: 1630 YNYPPKV 1636


>sp|VE1_HPV04|REPLICATION protein E1|Human papillomavirus 4

Query: 2  YNKPPE 7
          YNK PE
Sbjct: 81 YNKSPE 86


>sp|L_MABVM|RNA-DIRECTED RNA polymerase L|Lake Victoria marburgvirus (strain Musoke-80)

Query: 1    FYNKPPEIDI 10
            +++KP ++D+
Sbjct: 1387 YFDKPLDVDL 1396


>sp|R1AB_CVHOC|REPLICASE polyprotein 1ab|Human coronavirus OC43 (HCoV-OC43)

Query: 2    YNKPPEIDI 10
            YN P  +DI
Sbjct: 4823 YNLPTMVDI 4831


>sp|L_BUNYW|RNA-DIRECTED RNA polymerase L|Bunyamwera virus (BUNV)

Query: 1   FYNKPPEIDI 10
            YN  PE+++
Sbjct: 619 LYNNNPEVNL 628


>sp|R1AB_CVHN5|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N5)

Query: 2    YNKPPEIDI 10
            YN P  +DI
Sbjct: 4861 YNLPTMVDI 4869


>sp|R1AB_CVHN2|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N2)

Query: 2    YNKPPEIDI 10
            YN P  +DI
Sbjct: 4881 YNLPTMVDI 4889


>sp|R1AB_CVHN1|REPLICASE polyprotein 1ab|Human coronavirus HKU1 (isolate N1)

Query: 2    YNKPPEIDI 10
            YN P  +DI
Sbjct: 4911 YNLPTMVDI 4919


>sp|TRM1_HHV7J|TRIPARTITE terminase subunit 1|Human herpesvirus 7 (strain JI)

Query: 1   FYNKPPEI 8
            Y+KPP +
Sbjct: 263 LYSKPPHL 270




126|Sequence|626|635|PEIDITCWDA

>sp|GP_SEOUS|ENVELOPMENT polyprotein|Seoul virus (strain SR-11) (Sapporo

Query: 1    PEIDITCW 8
            PE  ITCW
Sbjct: 1081 PECGITCW 1088


>sp|L_EBOSU|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Human/Uganda/Gulu/2000)

Query: 3   IDITCWDA 10
           ++ TCWDA
Sbjct: 490 VEQTCWDA 497


>sp|L_EBOSM|RNA-DIRECTED RNA polymerase L|Sudan ebolavirus (strain Maleo-79) (SEBOV)

Query: 3   IDITCWDA 10
           ++ TCWDA
Sbjct: 490 VEQTCWDA 497


>sp|L_EBORR|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Reston-89) (REBOV)

Query: 3   IDITCWDA 10
           ++ TCWDA
Sbjct: 489 VEQTCWDA 496


>sp|L_EBORE|RNA-DIRECTED RNA polymerase L|Reston ebolavirus (strain Philippines-96) (REBOV)

Query: 3   IDITCWDA 10
           ++ TCWDA
Sbjct: 489 VEQTCWDA 496


>sp|GP_SEOU8|ENVELOPMENT polyprotein|Seoul virus (strain 80-39)

Query: 1    PEIDITCW 8
            PE  ITCW
Sbjct: 1081 PECGITCW 1088


>sp|L_EBOZM|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Mayinga-76) (ZEBOV)

Query: 3   IDITCWDA 10
           ++ TCWDA
Sbjct: 489 VERTCWDA 496


>sp|L_EBOZ5|RNA-DIRECTED RNA polymerase L|Zaire ebolavirus (strain Kikwit-95) (ZEBOV)

Query: 3   IDITCWDA 10
           ++ TCWDA
Sbjct: 489 VERTCWDA 496


>sp|GP_HANTB|ENVELOPMENT polyprotein|Hantaan virus (strain B-1) (Korean

Query: 1    PEIDITCW 8
            PE  +TCW
Sbjct: 1081 PECGVTCW 1088


>sp|GP_SEOUR|ENVELOPMENT polyprotein|Seoul virus (strain R22)

Query: 1    PEIDITCW 8
            PE  +TCW
Sbjct: 1082 PECGVTCW 1089


>sp|LT_POVWU|LARGE T antigen|WU polyomavirus (WUPyV)

Query: 3  IDITCW 8
          +D+TCW
Sbjct: 19 LDMTCW 24


>sp|VE7_HPV69|PROTEIN E7|Human papillomavirus 69

Query: 1  PEIDITCWD 9
          PEID+ C++
Sbjct: 19 PEIDLQCYE 27


>sp|VE7_HPV26|PROTEIN E7|Human papillomavirus type 26

Query: 1  PEIDITCWD 9
          PEID+ C++
Sbjct: 19 PEIDLRCYE 27


>sp|ST_POVWU|SMALL t antigen|WU polyomavirus (WUPyV)

Query: 3  IDITCW 8
          +D+TCW
Sbjct: 19 LDMTCW 24


>sp|GP_PUUMS|ENVELOPMENT polyprotein|Puumala virus (strain Sotkamo/V-2969/81)

Query: 1    PEIDITCW 8
            PE  ++CW
Sbjct: 1092 PECGMSCW 1099


>sp|GP_PUUMP|ENVELOPMENT polyprotein|Puumala virus (strain P360)

Query: 1    PEIDITCW 8
            PE  ++CW
Sbjct: 1092 PECGMSCW 1099


>sp|GP_PUUMG|ENVELOPMENT polyprotein|Puumala virus (strain Bank vole/Russia/CG1820/1984)

Query: 1    PEIDITCW 8
            PE  ++CW
Sbjct: 1092 PECGMSCW 1099


>sp|GP_PUUMK|ENVELOPMENT polyprotein|Puumala virus (strain K27)

Query: 1    PEIDITCW 8
            PE  ++CW
Sbjct: 1092 PECGMSCW 1099


>sp|VE2_HPV48|REGULATORY protein E2|Human papillomavirus type 48

Query: 6   TCWD 9
           TCWD
Sbjct: 137 TCWD 140


>sp|YVDE_VACCC|UNCHARACTERIZED 9.3 kDa protein|Vaccinia virus (strain Copenhagen) (VACV)

Query: 3  IDITCW 8
          +DI CW
Sbjct: 35 LDIFCW 40


>sp|VE7_HPV34|PROTEIN E7|Human papillomavirus type 34

Query: 2  EIDITCWDA 10
          E D+TC+++
Sbjct: 20 ETDLTCYES 28


>sp|GP_PUUMU|ENVELOPE glycoprotein|Puumala virus (strain Udmurtia/894CG/91)

Query: 1   PEIDITCW 8
           PE  ++CW
Sbjct: 180 PECGMSCW 187


>sp|GAG_HV2EH|GAG polyprotein|Human immunodeficiency virus type 2

Query: 5   ITCWD 9
           +TCW+
Sbjct: 387 VTCWN 391


>sp|UL120_HCMVA|UNCHARACTERIZED protein UL120|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 5   ITCW 8
           +TCW
Sbjct: 116 VTCW 119


>sp|GAG_HV2D2|GAG polyprotein|Human immunodeficiency virus type 2

Query: 5   ITCWD 9
           +TCW+
Sbjct: 388 VTCWN 392


>sp|L_CCHFI|RNA-DIRECTED RNA polymerase L|Crimean-Congo hemorrhagic fever virus (strain

Query: 1    PEIDITCW 8
            PE+ I C+
Sbjct: 1587 PEVTIPCF 1594


>sp|UL120_HCMVM|MEMBRANE protein UL120|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 5   ITCW 8
           +TCW
Sbjct: 117 VTCW 120


>sp|POL_HV2EH|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 5   ITCWD 9
           +TCW+
Sbjct: 387 VTCWN 391


>sp|POL_HV2UC|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 5   ITCWD 9
           +TCW+
Sbjct: 388 VTCWN 392


>sp|L_HENDH|RNA-DIRECTED RNA polymerase L|Hendra virus (isolate Horse/Autralia/Hendra/1994)

Query: 1   PEIDITCWD 9
           PEI + C D
Sbjct: 232 PEIVLMCCD 240


>sp|POL_HV2D2|GAG-POL polyprotein|Human immunodeficiency virus type 2

Query: 5   ITCWD 9
           +TCW+
Sbjct: 388 VTCWN 392


>sp|GAG_HV2UC|GAG polyprotein|Human immunodeficiency virus type 2

Query: 5   ITCWD 9
           +TCW+
Sbjct: 388 VTCWN 392


>sp|NRAM_I000F|NEURAMINIDASE A virus (strain A/Chicken/Weybridge

Query: 5   ITCWD 9
           I CWD
Sbjct: 410 IDCWD 414


>sp|CAPSD_TTVVG|PROBABLE capsid and replication-associated protein|Torque teno virus

Query: 1   PEIDITCWD 9
           PE+    WD
Sbjct: 625 PELTFHTWD 633


>sp|GP_BCCV|ENVELOPMENT polyprotein|Black Creek Canal orthohantavirus (BCCV)

Query: 1    PEIDITCWDA 10
            P   I CW A
Sbjct: 1088 PPCSIKCWFA 1097


>sp|CAPSD_TTVA1|CAPSID protein|Torque teno virus 1 (isolate

Query: 1   PEIDITCWD 9
           PE+    WD
Sbjct: 625 PELTFHTWD 633


>sp|CAPSD_TTVV2|CAPSID protein|Torque teno virus (isolate Human/Japan/TRM1/1999)

Query: 1   PEIDITCWD 9
           PE+    WD
Sbjct: 625 PELTFHTWD 633


>sp|L_ISFV|RNA-DIRECTED RNA polymerase L|Isfahan virus (ISFV)

Query: 6    TCWD 9
            TCW+
Sbjct: 1717 TCWE 1720


>sp|CAPSD_TTVV1|PROBABLE capsid and replication-associated protein|Torque teno virus (strain

Query: 1   PEIDITCWD 9
           PE+    WD
Sbjct: 625 PELTFHTWD 633


>sp|VE7_HPV30|PROTEIN E7|Human papillomavirus 30

Query: 2  EIDITCWD 9
          EID+ C++
Sbjct: 20 EIDLHCYE 27




127|Sequence|631|640|TCWDADPVPE

>sp|PORTL_HCMVM|PORTAL protein|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 6   DPVPE 10
           DPVPE
Sbjct: 591 DPVPE 595


>sp|PORTL_HCMVA|PORTAL protein|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 6   DPVPE 10
           DPVPE
Sbjct: 591 DPVPE 595


>sp|PG023_MONPV|ANKYRIN repeat domain-containing protein OPG023|Monkeypox virus (MPXV)

Query: 6   DPVPE 10
           DPVPE
Sbjct: 148 DPVPE 152


>sp|PG023_CWPXB|ANKYRIN repeat domain-containing protein OPG023|Cowpox virus (strain

Query: 6   DPVPE 10
           DPVPE
Sbjct: 148 DPVPE 152


>sp|PG023_COWPX|ANKYRIN repeat domain-containing protein OPG023|Cowpox virus (CPV)

Query: 6   DPVPE 10
           DPVPE
Sbjct: 148 DPVPE 152


>sp|DPOL_HHV1K|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain KOS)

Query: 3    WDADPVPE 10
            W A P+PE
Sbjct: 998  WLARPLPE 1005


>sp|DPOL_HHV1A|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain Angelotti)

Query: 3    WDADPVPE 10
            W A P+PE
Sbjct: 998  WLARPLPE 1005


>sp|DPOL_HHV1S|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain SC16)

Query: 3    WDADPVPE 10
            W A P+PE
Sbjct: 998  WLARPLPE 1005


>sp|DPOL_HHV11|DNA polymerase catalytic subunit|Human herpesvirus 1 (strain 17)

Query: 3    WDADPVPE 10
            W A P+PE
Sbjct: 998  WLARPLPE 1005


>sp|L_PIV5W|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain 21004-WR)

Query: 5   ADPVPE 10
           +DP+PE
Sbjct: 304 SDPIPE 309


>sp|L_PIV5|RNA-DIRECTED RNA polymerase L|Parainfluenza virus 5 (strain W3)

Query: 5   ADPVPE 10
           +DP+PE
Sbjct: 304 SDPIPE 309


>sp|DPOL_HHV2H|DNA polymerase catalytic subunit|Human herpesvirus 2 (strain HG52)

Query: 3    WDADPVPE 10
            W A P+PE
Sbjct: 1003 WLARPLPE 1010


>sp|DPOL_HHV21|DNA polymerase catalytic subunit|Human herpesvirus 2 (strain 186)

Query: 3    WDADPVPE 10
            W A P+PE
Sbjct: 1003 WLARPLPE 1010


>sp|ICP27_HCMVA|MRNA export factor ICP27 homolog|Human cytomegalovirus (strain AD169)

Query: 2  CWDADPVP 9
          C D +PVP
Sbjct: 31 CLDYEPVP 38


>sp|ICP27_HCMVM|MRNA export factor ICP27 homolog|Human cytomegalovirus (strain Merlin)

Query: 2  CWDADPVP 9
          C D +PVP
Sbjct: 31 CLDYEPVP 38


>sp|RIR1_HHV11|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Human herpesvirus 1 (strain 17)

Query: 2   CWDADPVP 9
           C D  PVP
Sbjct: 386 CLDVPPVP 393


>sp|CAPSD_HBOC4|MINOR capsid protein VP1|Human bocavirus 4 (HBoV4) (Human

Query: 3   WDADPVPE 10
           WD D +PE
Sbjct: 302 WDEDVMPE 309


>sp|PRIM_HCMVT|DNA primase|Human cytomegalovirus (strain Towne) (HHV-5)

Query: 3   WDADPVPE 10
           +DAD  PE
Sbjct: 279 YDADAAPE 286


>sp|PRIM_HCMVM|DNA primase|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 3   WDADPVPE 10
           +DAD  PE
Sbjct: 279 YDADAAPE 286


>sp|CAPSD_HBOC2|MINOR capsid protein VP1|Human bocavirus 2 (HBoV2) (Human

Query: 3   WDADPVPE 10
           WD D +PE
Sbjct: 301 WDEDVMPE 308


>sp|PRIM_HCMVA|DNA primase|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 3   WDADPVPE 10
           +DAD  PE
Sbjct: 279 YDADAAPE 286


>sp|GP_BUNYW|ENVELOPMENT polyprotein|Bunyamwera virus (BUNV)

Query: 2   CWDADP 7
           CW  DP
Sbjct: 818 CWLVDP 823


>sp|CAPSD_HBOC3|MINOR capsid protein VP1|Human bocavirus 3 (HBoV3) (Adelavirus

Query: 3   WDADPVPE 10
           WD D +PE
Sbjct: 302 WDEDVMPE 309


>sp|POLG_DEN2Q|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    TCWDADPVP 9
            T  D DP+P
Sbjct: 2394 TVIDLDPIP 2402


>sp|POLG_DEN2N|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    TCWDADPVP 9
            T  D DP+P
Sbjct: 2394 TVIDLDPIP 2402


>sp|POLG_DEN2J|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    TCWDADPVP 9
            T  D DP+P
Sbjct: 2394 TVIDLDPIP 2402


>sp|POLG_DEN28|GENOME polyprotein|Dengue virus type 2 (isolate

Query: 1    TCWDADPVP 9
            T  D DP+P
Sbjct: 2394 TVIDLDPIP 2402


>sp|POLG_DEN27|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    TCWDADPVP 9
            T  D DP+P
Sbjct: 2394 TVIDLDPIP 2402


>sp|POLG_DEN2P|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    TCWDADPVP 9
            T  D DP+P
Sbjct: 2391 TVIDLDPIP 2399


>sp|POLG_DEN26|GENOME polyprotein|Dengue virus type 2 (strain

Query: 1    TCWDADPVP 9
            T  D DP+P
Sbjct: 2394 TVIDLDPIP 2402


>sp|POLG_TMUV|GENOME polyprotein|Tembusu virus (TMUV)

Query: 4    DADPVPE 10
            +A PVPE
Sbjct: 2669 EASPVPE 2675


>sp|PRIM_EBVB9|DNA primase|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 3   WDADP 7
           WD DP
Sbjct: 346 WDPDP 350


>sp|R1AB_CVHNL|REPLICASE polyprotein 1ab|Human coronavirus NL63 (HCoV-NL63)

Query: 2    CWDADPV 8
            C+D  PV
Sbjct: 5915 CYDKQPV 5921


>sp|R1AB_CVH22|REPLICASE polyprotein 1ab|Human coronavirus 229E (HCoV-229E)

Query: 2    CWDADPV 8
            C+D +P+
Sbjct: 5940 CYDKNPI 5946


>sp|L_PI2HT|RNA-DIRECTED RNA polymerase L|Human parainfluenza 2 virus (strain

Query: 2   CWDADPVPE 10
           C+D DP  E
Sbjct: 462 CFDFDPGEE 470


>sp|RIR1_HHV23|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Human herpesvirus 2 (strain 333)

Query: 2   CWDADPVP 9
           C D  PVP
Sbjct: 393 CLDLPPVP 400


>sp|VP1_POVJC|MAJOR capsid protein VP1|JC polyomavirus (JCPyV) (JCV)

Query: 2   CWDADP 7
           CW  DP
Sbjct: 200 CWVPDP 205


>sp|RIR1_HHV2H|RIBONUCLEOSIDE-DIPHOSPHATE reductase large subunit|Human herpesvirus 2 (strain HG52)

Query: 2   CWDADPVP 9
           C D  PVP
Sbjct: 391 CLDLPPVP 398


>sp|DPOL_ADE40|DNA polymerase|Human adenovirus F serotype 40

Query: 4   DADPVPE 10
           DADP PE
Sbjct: 733 DADPPPE 739


>sp|VL1_HPV49|MAJOR capsid protein L1|Human papillomavirus type 49

Query: 2   CWDADPVPE 10
           C D  P PE
Sbjct: 439 CPDKQPAPE 447


>sp|L_MUMPM|RNA-DIRECTED RNA polymerase L|Mumps virus genotype B (strain

Query: 2   CWDADP 7
           C+DA P
Sbjct: 463 CFDASP 468


>sp|L_MUMPZ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype N (strain

Query: 2   CWDADP 7
           C+DA P
Sbjct: 463 CFDASP 468


>sp|L_MUMPJ|RNA-DIRECTED RNA polymerase L|Mumps virus genotype A (strain

Query: 2   CWDADP 7
           C+DA P
Sbjct: 463 CFDASP 468


>sp|SPIK2_ADE41|FIBER protein 2|Human adenovirus F serotype 41

Query: 1   TCWDADPVP 9
           T W   P P
Sbjct: 232 TIWSISPTP 240


>sp|SPIK2_ADE40|FIBER protein 2|Human adenovirus F serotype 40

Query: 1   TCWDADPVP 9
           T W   P P
Sbjct: 232 TIWSISPTP 240


>sp|VP1_POVBK|MAJOR capsid protein VP1|BK polyomavirus (BKPyV) (Human polyomavirus

Query: 2   CWDADP 7
           CW  DP
Sbjct: 208 CWVPDP 213


>sp|VP1_POVBA|MAJOR capsid protein VP1|BK polyomavirus (strain AS) (BKPyV)

Query: 2   CWDADP 7
           CW  DP
Sbjct: 208 CWIPDP 213


>sp|VE1_HPV73|REPLICATION protein E1|Human papillomavirus 73

Query: 5  ADPVPE 10
           DP+PE
Sbjct: 26 GDPIPE 31


>sp|TEG1_HHV1F|TEGUMENT protein UL46|Human herpesvirus 1 (strain F)

Query: 1   TCWDADPVPE 10
           T W A P P+
Sbjct: 430 TTWSAGPPPD 439




128|Sequence|636|649|DPVPEEEEGFEGGD

>sp|VE1_HPV73|REPLICATION protein E1|Human papillomavirus 73

Query: 1  DPVPEEEEGFEGGD 14
          DP+PE+E  ++GGD
Sbjct: 27 DPIPEDEN-YDGGD 39


>sp|VE1_HPV2A|REPLICATION protein E1|Human papillomavirus type 2a

Query: 2   PVPEEEEGFEGGD 14
           PV ++EE  +GGD
Sbjct: 156 PVEDQEEERQGGD 168


>sp|RAP94_VARV|RNA polymerase-associated transcription-specificity factor

Query: 1   DPVPEEEE 8
           DP+P EEE
Sbjct: 713 DPMPFEEE 720


>sp|RAP94_VAR67|RNA polymerase-associated transcription-specificity factor

Query: 1   DPVPEEEE 8
           DP+P EEE
Sbjct: 713 DPMPFEEE 720


>sp|RAP94_VACCC|RNA polymerase-associated transcription-specificity factor

Query: 1   DPVPEEEE 8
           DP+P EEE
Sbjct: 713 DPMPFEEE 720


>sp|RAP94_VACCA|RNA polymerase-associated transcription-specificity factor

Query: 1   DPVPEEEE 8
           DP+P EEE
Sbjct: 713 DPMPFEEE 720


>sp|RAP94_MONPV|RNA polymerase-associated transcription-specificity factor

Query: 1   DPVPEEEE 8
           DP+P EEE
Sbjct: 713 DPMPFEEE 720


>sp|VE1_HPV27|REPLICATION protein E1|Human papillomavirus 27

Query: 2   PVPEEEEGFEGGD 14
           PV ++EE  +GGD
Sbjct: 156 PVEDKEEERQGGD 168


>sp|TAT_HV1MV|PROTEIN Tat|Human immunodeficiency virus type 1

Query: 1  DPVPEEEEG 9
          DPVPE+  G
Sbjct: 66 DPVPEQHTG 74


>sp|POLG_EC09H|GENOME polyprotein|Echovirus 9 (strain Hill)

Query: 2   PVPEEEEGFE 11
           P+P++ +G+E
Sbjct: 721 PIPKKVDGYE 730


>sp|POLG_HAVMB|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE++ FE
Sbjct: 781 DPRSEEDKRFE 791


>sp|POLG_HAVHM|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE++ FE
Sbjct: 781 DPRSEEDKRFE 791


>sp|POLG_HAVNO|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 781 DPRSEEDRKFE 791


>sp|POLG_HAVJ8|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 781 DPRSEEDRKFE 791


>sp|PRIM_HHV2H|DNA primase|Human herpesvirus 2 (strain HG52)

Query: 4  PEEEEGFEG 12
          P E+E FEG
Sbjct: 67 PTEQERFEG 75


>sp|POLG_HAVGB|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 781 DPRSEEDRRFE 791


>sp|VE1_HPV07|REPLICATION protein E1|Human papillomavirus 7

Query: 6   EEEGFEGG 13
           E EG EGG
Sbjct: 156 EPEGIEGG 163


>sp|POLG_HAVLA|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 781 DPRSEEDRRFE 791


>sp|POLG_HAVCF|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 781 DPRSEEDRRFE 791


>sp|POLG_HAVHA|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 775 DPRSEEDRRFE 785


>sp|POLG_HAVH2|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 781 DPRSEEDRRFE 791


>sp|POLG_HAV88|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 781 DPRSEEDRRFE 791


>sp|POLG_HAVGA|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 760 DPRTEEDRKFE 770


>sp|POLG_HAVCR|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 781 DPRSEEDRRFE 791


>sp|ENV_HV2RO|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 5   EEEEGFEGGD 14
           EE+ G  GGD
Sbjct: 736 EEDGGSNGGD 745


>sp|ENV_HV2NZ|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 5   EEEEGFEGGD 14
           EE+ G  GGD
Sbjct: 727 EEDVGSNGGD 736


>sp|VL1_HPV39|MAJOR capsid protein L1|Human papillomavirus 39

Query: 2   PVPEEEEGFEG 12
           P PE+++ ++G
Sbjct: 433 PAPEKKDPYDG 443


>sp|SHUT_ADE12|SHUTOFF protein|Human adenovirus A serotype 12

Query: 4  PEEEEGF 10
          PEE EGF
Sbjct: 48 PEEFEGF 54


>sp|POLG_HCVVO|GENOME polyprotein|Hepatitis C virus genotype 6k

Query: 9    GFEGGD 14
            GF GGD
Sbjct: 2979 GFSGGD 2984


>sp|ENV_HV2CA|ENVELOPE glycoprotein gp160|Human immunodeficiency virus type 2

Query: 5   EEEEGFEGGD 14
           EE+ G  GGD
Sbjct: 737 EEDVGGNGGD 746


>sp|VL2_HPV13|MINOR capsid protein L2|Human papillomavirus 13

Query: 1   DPVPEEEEGFE 11
           DP+P    GFE
Sbjct: 120 DPLPPVHGGFE 130


>sp|POLG_ILHV|GENOME polyprotein|Ilheus virus (ILHV)

Query: 1    DPVPEEEEGFEGG 13
            DP    +E F GG
Sbjct: 1961 DPTQSGDEYFYGG 1973


>sp|PORTL_HCMVM|PORTAL protein|Human cytomegalovirus (strain Merlin) (HHV-5)

Query: 1   DPVPE 5
           DPVPE
Sbjct: 591 DPVPE 595


>sp|PORTL_HCMVA|PORTAL protein|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 1   DPVPE 5
           DPVPE
Sbjct: 591 DPVPE 595


>sp|KR2_EBVG|SERINE/THREONINE-PROTEIN kinase BGLF4|Epstein-Barr virus (strain GD1) (HHV-4)

Query: 2   PVPEEEEGFEGGD 14
           P P  + GF+  D
Sbjct: 320 PYPNPDMGFDRSD 332


>sp|KR2_EBVB9|SERINE/THREONINE-PROTEIN kinase BGLF4|Epstein-Barr virus (strain B95-8) (HHV-4)

Query: 2   PVPEEEEGFEGGD 14
           P P  + GF+  D
Sbjct: 320 PYPNPDMGFDRSD 332


>sp|KR2_EBVA8|SERINE/THREONINE-PROTEIN kinase BGLF4|Epstein-Barr virus (strain AG876) (HHV-4)

Query: 2   PVPEEEEGFEGGD 14
           P P  + GF+  D
Sbjct: 320 PYPNPDMGFDRSD 332


>sp|POLG_HCV6A|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 9    GFEGGD 14
            G++GGD
Sbjct: 2982 GYDGGD 2987


>sp|POLG_EC09B|GENOME polyprotein|Echovirus 9 (strain Barty)

Query: 2   PVPEEEEGFE 11
           P P++ +G+E
Sbjct: 721 PFPKKVDGYE 730


>sp|POLG_HCVT5|GENOME polyprotein|Hepatitis C virus genotype 6b

Query: 9    GFEGGD 14
            G++GGD
Sbjct: 2982 GYDGGD 2987


>sp|POLG_HCVEU|GENOME polyprotein|Hepatitis C virus genotype 6a

Query: 9    GFEGGD 14
            G++GGD
Sbjct: 2981 GYDGGD 2986


>sp|POLN_HEVCT|NON-STRUCTURAL polyprotein pORF1|Hepatitis E virus genotype 4

Query: 6   EEEGFEGGD 14
           + E FEG D
Sbjct: 498 DNEAFEGSD 506


>sp|CVC1_HHV11|CAPSID vertex component 1|Human herpesvirus 1 (strain 17)

Query: 4   PEEEEGFEGGD 14
           PEE+    GGD
Sbjct: 234 PEEQLTAPGGD 244


>sp|POLS_EEEV1|STRUCTURAL polyprotein|Eastern equine encephalitis virus (strain

Query: 4   PEEEEGFEGGD 14
           P+ +EG   GD
Sbjct: 526 PDVQEGTTSGD 536


>sp|POLG_HAVLC|GENOME polyprotein|Human hepatitis A virus genotype

Query: 1   DPVPEEEEGFE 11
           DP  EE+  FE
Sbjct: 285 DPRSEEDRRFE 295


>sp|PAP_HHV2H|DNA polymerase processivity factor|Human herpesvirus 2 (strain HG52)

Query: 6   EEEGFEG 12
           EEEG EG
Sbjct: 364 EEEGLEG 370


>sp|NEF_HV2UC|PROTEIN Nef|Human immunodeficiency virus type 2

Query: 3   VPEEEEGFE 11
           +PEEE G E
Sbjct: 164 IPEEERGAE 172


>sp|VE1_HPV10|REPLICATION protein E1|Human papillomavirus type 10

Query: 1   DPVPEEEEG 9
           DP  EEE G
Sbjct: 656 DPEDEEEHG 664


>sp|LT_POVBK|LARGE T antigen|BK polyomavirus (BKPyV) (Human polyomavirus

Query: 1   DPVPEEEEGFEGG 13
           DP    EE  +GG
Sbjct: 241 DPYHTIEESIQGG 253


>sp|TRS1_HCMVA|PROTEIN HHLF1|Human cytomegalovirus (strain AD169) (HHV-5)

Query: 2   PVPEEEEGFEGG 13
           PVP +  G  GG
Sbjct: 403 PVPPQPYGAAGG 414