COPA1_HUMAN Blast OutputR
Archaea
1|SequenceR|10|1|GKGAHKKLLM

>sp|FPOI_METMA|F(420)H(2) dehydrogenase subunit I|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 KGAHKKLLM 10
K AHK LLM
Sbjct: 152 KWAHKDLLM 160


>sp|FTSZ2_PYRHO|CELL division protein FtsZ 2|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 AHKKLLM 10
AHKKLL+
Sbjct: 77 AHKKLLL 83


>sp|FTSZ2_PYRAB|CELL division protein FtsZ 2|Pyrococcus abyssi (strain GE5 /

Query: 4 AHKKLLM 10
AHKKLL+
Sbjct: 77 AHKKLLL 83


>sp|FTSZ2_THEKO|CELL division protein FtsZ 2|Thermococcus kodakarensis (strain ATCC

Query: 4 AHKKLLM 10
AHKKLL+
Sbjct: 79 AHKKLLL 85


>sp|LYSZ_SACI7|[LYSW]-AMINOADIPATE/[LYSW]-GLUTAMATE kinase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 GKGAHKKLLM 10
G G ++KLLM
Sbjct: 218 GPGMNRKLLM 227


>sp|LYSZ_SACI6|[LYSW]-AMINOADIPATE/[LYSW]-GLUTAMATE kinase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 GKGAHKKLLM 10
G G ++KLLM
Sbjct: 218 GPGMNRKLLM 227


>sp|LYSZ_SACI4|[LYSW]-AMINOADIPATE/[LYSW]-GLUTAMATE kinase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 GKGAHKKLLM 10
G G ++KLLM
Sbjct: 218 GPGMNRKLLM 227


>sp|LYSZ_SACI3|[LYSW]-AMINOADIPATE/[LYSW]-GLUTAMATE kinase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 GKGAHKKLLM 10
G G ++KLLM
Sbjct: 218 GPGMNRKLLM 227


>sp|LYSZ_SACI2|[LYSW]-AMINOADIPATE/[LYSW]-GLUTAMATE kinase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 GKGAHKKLLM 10
G G ++KLLM
Sbjct: 218 GPGMNRKLLM 227


>sp|LYSZ_SACS2|[LYSW]-AMINOADIPATE/[LYSW]-GLUTAMATE kinase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 GKGAHKKLLM 10
G G ++KLLM
Sbjct: 218 GPGMNRKLLM 227




2|SequenceR|15|6|PERGGGKGAH

>sp|PELO_SULAC|PROTEIN pelota homolog|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PERGGGKGAH 10
PER G KGAH
Sbjct: 83 PERFGIKGAH 92


>sp|PELO_SACS2|PROTEIN pelota homolog|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PERGGGKGAH 10
PER G KGAH
Sbjct: 83 PERFGIKGAH 92


>sp|PELO_SACI7|PROTEIN pelota homolog|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 PERGGGKGAH 10
PER G +GAH
Sbjct: 83 PERFGIRGAH 92


>sp|PELO_SACI6|PROTEIN pelota homolog|Saccharolobus islandicus (strain M.16.4 /

Query: 1 PERGGGKGAH 10
PER G +GAH
Sbjct: 83 PERFGIRGAH 92


>sp|PELO_SACI4|PROTEIN pelota homolog|Saccharolobus islandicus (strain M.14.25 /

Query: 1 PERGGGKGAH 10
PER G +GAH
Sbjct: 83 PERFGIRGAH 92


>sp|PELO_SACI3|PROTEIN pelota homolog|Saccharolobus islandicus (strain M.16.27)

Query: 1 PERGGGKGAH 10
PER G +GAH
Sbjct: 83 PERFGIRGAH 92


>sp|PELO_SACI2|PROTEIN pelota homolog|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 PERGGGKGAH 10
PER G +GAH
Sbjct: 83 PERFGIRGAH 92


>sp|PELO_SACI1|PROTEIN pelota homolog|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 PERGGGKGAH 10
PER G +GAH
Sbjct: 83 PERFGIRGAH 92


>sp|PELO_METS5|PROTEIN pelota homolog|Metallosphaera sedula (strain ATCC 51363

Query: 1 PERGGGKGAH 10
PER G KG+H
Sbjct: 83 PERYGIKGSH 92


>sp|PELO_SULTO|PROTEIN pelota homolog|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 PERGGGKGAH 10
PER G KG+H
Sbjct: 83 PERFGIKGSH 92


>sp|YD5A_METJA|UNCHARACTERIZED protein MJ1351.1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 ERGGGKGA 9
ERG GKG+
Sbjct: 29 ERGNGKGS 36


>sp|RL30_SACS2|LARGE ribosomal subunit protein uL30|Saccharolobus solfataricus (strain

Query: 1 PERGGGKGA 9
P RGG KG+
Sbjct: 124 PPRGGFKGS 132


>sp|DIPPS_THEKO|BIFUNCTIONAL IPC transferase and DIPP|Thermococcus kodakarensis (strain ATCC

Query: 1 PERGGGKGAH 10
PE+G G H
Sbjct: 79 PEKGNGHSLH 88


>sp|Y2030_SACS2|PUTATIVE ABC transporter ATP-binding protein|Saccharolobus solfataricus

Query: 1 PERGGGKG 8
P R GGKG
Sbjct: 273 PSRIGGKG 280


>sp|Y1771_AERPE|MEMO1 family protein APE_1771|Aeropyrum pernix (strain ATCC 700893

Query: 1 PERGGGKG 8
P+RGGG G
Sbjct: 38 PQRGGGSG 45


>sp|GGR_SULAC|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PERGGGKGA 9
P GGGKG+
Sbjct: 295 PVHGGGKGS 303


>sp|COFC_METVS|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus vannielii (strain ATCC 35089

Query: 1 PERGGG 6
P RGGG
Sbjct: 126 PSRGGG 131


>sp|COFC_METVM|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus vulcanius (strain ATCC

Query: 1 PERGGG 6
P RGGG
Sbjct: 122 PSRGGG 127


>sp|COFC_METSF|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus sp. (strain FS406-22)

Query: 1 PERGGG 6
P RGGG
Sbjct: 122 PSRGGG 127


>sp|COFC_METMP|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain DSM 14266

Query: 1 PERGGG 6
P RGGG
Sbjct: 126 PSRGGG 131


>sp|COFC_METM7|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain C7 /

Query: 1 PERGGG 6
P RGGG
Sbjct: 126 PSRGGG 131


>sp|COFC_METM6|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain C6 /

Query: 1 PERGGG 6
P RGGG
Sbjct: 126 PSRGGG 131


>sp|COFC_METM5|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus maripaludis (strain C5 /

Query: 1 PERGGG 6
P RGGG
Sbjct: 126 PSRGGG 131


>sp|COFC_METJA|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PERGGG 6
P RGGG
Sbjct: 128 PSRGGG 133


>sp|COFC_METIM|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanocaldococcus infernus (strain DSM 11812

Query: 1 PERGGG 6
P RGGG
Sbjct: 120 PSRGGG 125


>sp|COFC_META3|2-PHOSPHO-L-LACTATE guanylyltransferase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 PERGGG 6
P RGGG
Sbjct: 126 PSRGGG 131


>sp|RS9_THEAC|SMALL ribosomal subunit protein uS9|Thermoplasma acidophilum (strain ATCC

Query: 1 PERGGGKGA 9
P++ GG+GA
Sbjct: 112 PKKAGGRGA 120


>sp|SERC_METMA|PHOSPHOSERINE aminotransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 GGKGAH 10
GG+GAH
Sbjct: 193 GGEGAH 198


>sp|VHCA_METVO|F420-NON-REDUCING hydrogenase vhc subunit A|Methanococcus voltae

Query: 3 RGGGKGAH 10
RG GKGA+
Sbjct: 281 RGEGKGAY 288


>sp|SERC_METBF|PHOSPHOSERINE aminotransferase|Methanosarcina barkeri (strain Fusaro /

Query: 5 GGKGAH 10
GG+GAH
Sbjct: 193 GGEGAH 198


>sp|SERC_METAC|PHOSPHOSERINE aminotransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 5 GGKGAH 10
GG+GAH
Sbjct: 193 GGEGAH 198


>sp|ENO_METAC|ENOLASE acetivorans (strain ATCC 35395

Query: 1 PERGGGKG 8
P R GGKG
Sbjct: 67 PNRYGGKG 74


>sp|RF1_METBU|PEPTIDE chain release factor subunit|Methanococcoides burtonii (strain DSM

Query: 2 ERGGGKGAH 10
+R GG+ AH
Sbjct: 174 QRKGGQSAH 182


>sp|ENO_METMA|ENOLASE mazei (strain ATCC BAA-159

Query: 1 PERGGGKG 8
P R GGKG
Sbjct: 66 PNRYGGKG 73


>sp|ENO_METBF|ENOLASE barkeri (strain Fusaro /

Query: 1 PERGGGKG 8
P R GGKG
Sbjct: 66 PNRYGGKG 73


>sp|RF12_METAC|PEPTIDE chain release factor subunit|Methanosarcina acetivorans (strain

Query: 2 ERGGGKGAH 10
+R GG+ AH
Sbjct: 175 QRKGGQSAH 183


>sp|SALAC_HALSA|SALACTIN salinarum (strain ATCC 700922

Query: 1 PERGGGKGAH 10
PE +GAH
Sbjct: 341 PETAAARGAH 350


>sp|RF11_METAC|PEPTIDE chain release factor subunit|Methanosarcina acetivorans (strain

Query: 2 ERGGGKGAH 10
+R GG+ AH
Sbjct: 175 QRKGGQSAH 183


>sp|RF1_METMA|PEPTIDE chain release factor subunit|Methanosarcina mazei (strain ATCC

Query: 2 ERGGGKGAH 10
+R GG+ AH
Sbjct: 175 QRKGGQSAH 183


>sp|FWDG_METJA|POLYFERREDOXIN protein FwdG|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PERGGGKGAH 10
PE GGKG +
Sbjct: 30 PETWGGKGPY 39




3|SequenceR|20|11|PDESRPERGG

>sp|PCKG_SULTO|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 DESRPERG 9
D+ RPERG
Sbjct: 341 DDKRPERG 348


>sp|GGGPS_PYRAB|GERANYLGERANYLGLYCERYL phosphate synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 PDESRPERGG 10
PD++ PE G
Sbjct: 28 PDDTHPEMAG 37


>sp|SYDND_METTH|ASPARTATE--TRNA(ASP/ASN) ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 PDESRPERG 9
PDE PER
Sbjct: 341 PDEDDPERS 349


>sp|SYT_METAR|THREONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 PDESRPE 7
PDES P+
Sbjct: 47 PDESNPQ 53


>sp|GGGPS_PYRFU|GERANYLGERANYLGLYCERYL phosphate synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PDESRPERGG 10
PD++ PE G
Sbjct: 26 PDDTSPEVAG 35


>sp|GGGPS_PYRHO|GERANYLGERANYLGLYCERYL phosphate synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PDESRPERGG 10
PD++ PE G
Sbjct: 29 PDDTSPEVAG 38




4|SequenceR|25|16|QEAPTPDESR

>sp|NUCS_PYRAE|ENDONUCLEASE NucS|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 EAPTPDES 9
EAPTPDE+
Sbjct: 10 EAPTPDEA 17


>sp|DP2L_PICTO|DNA polymerase II large subunit|Picrophilus torridus (strain ATCC

Query: 1 QEAPTPDESR 10
Q PTPDE R
Sbjct: 192 QYMPTPDEIR 201


>sp|DP2L_METST|DNA polymerase II large subunit|Methanosphaera stadtmanae (strain ATCC

Query: 1 QEAPTPDESR 10
Q +PTPDE R
Sbjct: 195 QYSPTPDEVR 204


>sp|COXX_SULAC|PROTOHEME IX farnesyltransferase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 PTPDES 9
PTP+ES
Sbjct: 256 PTPEES 261


>sp|DP2L_THEAC|DNA polymerase II large subunit|Thermoplasma acidophilum (strain ATCC

Query: 1 QEAPTPDE 8
Q PTPDE
Sbjct: 196 QYMPTPDE 203


>sp|Y2248_HALVD|UNCHARACTERIZED motility-related protein HVO_2248|Haloferax volcanii (strain ATCC

Query: 1 QEAPTPDES 9
+E P+PDES
Sbjct: 197 EEFPSPDES 205


>sp|GATD_THEPD|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Thermofilum pendens (strain DSM 2475

Query: 1 QEAPTPDE 8
+EAPTP E
Sbjct: 79 REAPTPGE 86


>sp|RL18_METS3|LARGE ribosomal subunit protein uL18|Methanobrevibacter smithii (strain

Query: 2 EAPTPDESR 10
EA PDESR
Sbjct: 134 EAVLPDESR 142


>sp|DP2L_THEVO|DNA polymerase II large subunit|Thermoplasma volcanium (strain ATCC

Query: 1 QEAPTPDE 8
Q PTPDE
Sbjct: 201 QYLPTPDE 208


>sp|SYA_CALMQ|ALANINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 4 PTPDESR 10
PTPDE +
Sbjct: 635 PTPDEVK 641


>sp|TRMY_METKA|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanopyrus kandleri

Query: 1 QEAPTPDESR 10
E PTP++ R
Sbjct: 148 HEGPTPEQDR 157


>sp|RNP2_METKA|RIBONUCLEASE P protein component 2|Methanopyrus kandleri (strain AV19 /

Query: 2 EAPTPDESR 10
E P P+E+R
Sbjct: 152 ECPLPEENR 160


>sp|AGOG_PYRAB|N-GLYCOSYLASE/DNA lyase|Pyrococcus abyssi (strain GE5 /

Query: 2 EAPTPDESR 10
E P P++SR
Sbjct: 168 EIPIPEDSR 176


>sp|RL3_METKA|LARGE ribosomal subunit protein uL3|Methanopyrus kandleri (strain AV19 /

Query: 3 APTPDESR 10
APTPD R
Sbjct: 93 APTPDGYR 100


>sp|CCA_PYRNV|CCA-ADDING enzyme|Pyrobaculum neutrophilum (strain DSM 2338

Query: 4 PTPDESR 10
PTP+E R
Sbjct: 17 PTPEEER 23




5|SequenceR|30|21|TRACHQEAPT

>sp|THSA_METTH|CHAPERONIN subunit alpha|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 RACHQEAP 9
RA H+E+P
Sbjct: 460 RAAHEESP 467


>sp|G3P_ARCFU|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 TRACHQEA 8
T+A HQEA
Sbjct: 297 TQAVHQEA 304


>sp|TDXH_IGNH4|PEROXIREDOXIN hospitalis (strain KIN4/I /

Query: 4 CHQEAP 9
CH++AP
Sbjct: 209 CHEKAP 214




6|SequenceR|35|26|ACPPMTRACH

>sp|SYS2_METBF|TYPE-2 serine--tRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 CPPMTR 7
CPP TR
Sbjct: 262 CPPQTR 267


>sp|Y038_METJA|UNCHARACTERIZED protein MJ0038|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CPPMTRACH 10
CPP+T H
Sbjct: 127 CPPITTRLH 135


>sp|SYS2_METBU|TYPE-2 serine--tRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 CPPMTR 7
CPP TR
Sbjct: 262 CPPKTR 267


>sp|DP2L_METMA|DNA polymerase II large subunit|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 PPMTRAC 9
PP+T AC
Sbjct: 1076 PPLTGAC 1082


>sp|DP2L_METBF|DNA polymerase II large subunit|Methanosarcina barkeri (strain Fusaro /

Query: 3 PPMTRAC 9
PP+T AC
Sbjct: 1070 PPLTGAC 1076


>sp|DP2L_METAC|DNA polymerase II large subunit|Methanosarcina acetivorans (strain ATCC

Query: 3 PPMTRAC 9
PP+T AC
Sbjct: 1069 PPLTGAC 1075


>sp|Y1856_ARCFU|UNCHARACTERIZED protein AF_1856|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 PMTRAC 9
P+TRAC
Sbjct: 401 PVTRAC 406


>sp|COFG_METTH|7,8-DIDEMETHYL-8-HYDROXY-5-DEAZARIBOFLAVIN synthase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 4 PMTRAC 9
P+TRAC
Sbjct: 10 PLTRAC 15




7|SequenceR|40|31|LAALVACPPM

>sp|FOLD_NITMS|BIFUNCTIONAL protein FolD|Nitrosopumilus maritimus (strain SCM1)

Query: 2 AALVACPP 9
AALVAC P
Sbjct: 135 AALVACTP 142


>sp|T1MH_METJA|TYPE I restriction enzyme MjaIX|Methanocaldococcus jannaschii (strain

Query: 3 ALVACPP 9
+VACPP
Sbjct: 410 GIVACPP 416


>sp|PANE_HALSA|2-DEHYDROPANTOATE 2-reductase|Halobacterium salinarum (strain ATCC 700922

Query: 2 AALVACPP 9
ALV CPP
Sbjct: 204 GALVECPP 211


>sp|OTC_METTH|ORNITHINE carbamoyltransferase|Methanothermobacter thermautotrophicus (strain

Query: 5 VACPP 9
VACPP
Sbjct: 172 VACPP 176


>sp|JAMM1_PYRFU|DESAMPYLASE furiosus (strain ATCC 43587

Query: 5 VACPPM 10
+ACPP+
Sbjct: 91 IACPPI 96


>sp|Y726_METJA|UNCHARACTERIZED protein MJ0726|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 ALVACPP 9
A++ CPP
Sbjct: 94 AIIGCPP 100


>sp|AROA_METMA|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 AALVACP 8
A L+ACP
Sbjct: 169 ALLIACP 175


>sp|AROA_METAC|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanosarcina acetivorans (strain ATCC

Query: 2 AALVACP 8
A L+ACP
Sbjct: 169 ALLIACP 175


>sp|AROA_METTP|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanothrix thermoacetophila (strain DSM

Query: 2 AALVACP 8
A L+ACP
Sbjct: 168 ALLIACP 174


>sp|ACDA2_METMA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina mazei

Query: 2 AALVACP 8
A L+ACP
Sbjct: 422 ACLIACP 428




8|SequenceR|45|36|AVVSLLAALV

***** No hits found ******


9|SequenceR|50|41|LCSVVAVVSL

>sp|GLMS_SULTO|GLUTAMINE--FRUCTOSE-6-PHOSPHATE aminotransferase [isomerizing]|Sulfurisphaera tokodaii (strain

Query: 1 LCSVVAVVSL 10
+C ++ +VSL
Sbjct: 1 MCGIIGIVSL 10


>sp|QUEC_PYRAE|7-CYANO-7-DEAZAGUANINE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 CSVVAVVS 9
C VVAVVS
Sbjct: 7 CRVVAVVS 14


>sp|MTRD_METMA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit D|Methanosarcina mazei (strain ATCC

Query: 1 LCSVVAVVSL 10
LC++VAV+++
Sbjct: 235 LCAIVAVIAI 244


>sp|PSTS_METJA|PHOSPHATE-BINDING protein PstS|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LCSVVAVVSL 10
LC +V V+S+
Sbjct: 23 LCLIVPVISI 32




10|SequenceR|55|46|KVGLYLCSVV

>sp|PCP_PYRFU|PYRROLIDONE-CARBOXYLATE peptidase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 GLYLCSVV 10
GLYLC+ V
Sbjct: 138 GLYLCNYV 145


>sp|RS14Z_AERPE|SMALL ribosomal subunit protein uS14|Aeropyrum pernix (strain ATCC

Query: 1 KVGLYLC 7
K GLYLC
Sbjct: 31 KYGLYLC 37


>sp|DEOC_AERPE|DEOXYRIBOSE-PHOSPHATE aldolase|Aeropyrum pernix (strain ATCC 700893

Query: 1 KVGLYLCSVV 10
K+G+ LCSV+
Sbjct: 70 KLGVKLCSVI 79


>sp|MTRG_METKA|TETRAHYDROMETHANOPTERIN S-methyltransferase subunit G|Methanopyrus kandleri (strain AV19

Query: 2 VGLYLC 7
+GLYLC
Sbjct: 58 IGLYLC 63


>sp|COOS2_METAC|CARBON monoxide dehydrogenase 2|Methanosarcina acetivorans (strain ATCC

Query: 1 KVGLYLCSVV 10
++ LYLC V
Sbjct: 142 EIALYLCEFV 151


>sp|HDLA_ARCPA|HETERODISULFIDE reductase subunit A-like protein|Archaeoglobus profundus (strain

Query: 1 KVGLYLC 7
K+G+Y+C
Sbjct: 7 KIGVYIC 13


>sp|METE_PYRHO|METHIONINE synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 KVGLYLC 7
KVGL++C
Sbjct: 206 KVGLHVC 212


>sp|METE_PYRFU|METHIONINE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 KVGLYLC 7
KVGL++C
Sbjct: 206 KVGLHVC 212


>sp|METE_PYRAB|METHIONINE synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 KVGLYLC 7
KVGL++C
Sbjct: 206 KVGLHVC 212


>sp|RS14Z_PYRAE|SMALL ribosomal subunit protein uS14|Pyrobaculum aerophilum (strain

Query: 1 KVGLYLCS 8
K GLYLC
Sbjct: 31 KYGLYLCR 38


>sp|RGYR_METJA|REVERSE gyrase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KVGLYLCSV 9
K+G+YL S+
Sbjct: 1189 KIGIYLNSI 1197


>sp|RS14Z_SULTO|SMALL ribosomal subunit protein uS14|Sulfurisphaera tokodaii (strain

Query: 1 KVGLYLCS 8
K GLYLC
Sbjct: 31 KYGLYLCR 38


>sp|RS14Z_SULAC|SMALL ribosomal subunit protein uS14|Sulfolobus acidocaldarius (strain

Query: 1 KVGLYLCS 8
K GLYLC
Sbjct: 31 KYGLYLCR 38


>sp|RS14Z_NANEQ|SMALL ribosomal subunit protein uS14|Nanoarchaeum equitans (strain

Query: 1 KVGLYLC 7
+ GLYLC
Sbjct: 45 RYGLYLC 51


>sp|HDRA_METTM|H(2):COB-COM heterodisulfide,ferredoxin reductase subunit

Query: 1 KVGLYLC 7
K+G+Y+C
Sbjct: 13 KIGVYVC 19


>sp|BIOB_METM5|BIOTIN synthase|Methanococcus maripaludis (strain C5 /

Query: 1 KVGLYLCS 8
K+GL +CS
Sbjct: 195 KIGLEMCS 202


>sp|RS4E_METVS|SMALL ribosomal subunit protein eS4|Methanococcus vannielii (strain ATCC

Query: 1 KVGLYLCSVV 10
K G+ LC +V
Sbjct: 117 KTGVKLCKIV 126


>sp|RS4E_METVA|SMALL ribosomal subunit protein eS4|Methanococcus vannielii

Query: 1 KVGLYLCSVV 10
K G+ LC +V
Sbjct: 117 KTGVKLCKIV 126


>sp|BIOB_METMP|BIOTIN synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 KVGLYLCS 8
K+GL +CS
Sbjct: 195 KIGLEMCS 202


>sp|MTNA_ARCFU|PUTATIVE methylthioribose-1-phosphate isomerase|Archaeoglobus fulgidus

Query: 1 KVGLYLCSVV 10
K+G Y SVV
Sbjct: 242 KIGTYTVSVV 251


>sp|BIOB_METM6|BIOTIN synthase|Methanococcus maripaludis (strain C6 /

Query: 1 KVGLYLCS 8
K+GL +CS
Sbjct: 195 KIGLEMCS 202


>sp|RL2_METMJ|LARGE ribosomal subunit protein uL2|Methanoculleus marisnigri (strain

Query: 2 VGLYLCSV 9
VG Y+C++
Sbjct: 101 VGAYVCNI 108


>sp|BIOB_META3|BIOTIN synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 KVGLYLCS 8
K+GL +CS
Sbjct: 192 KIGLEVCS 199


>sp|RS14Z_METBU|SMALL ribosomal subunit protein uS14|Methanococcoides burtonii (strain

Query: 1 KVGLYLC 7
K G+YLC
Sbjct: 27 KYGIYLC 33




11|SequenceR|60|51|QLDNTKVGLY

>sp|ASPD_METHJ|L-ASPARTATE dehydrogenase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 LDNTKVG 8
LDN KVG
Sbjct: 123 LDNLKVG 129




12|SequenceR|65|56|AAIRAQLDNT

>sp|HISX_HALMA|HISTIDINOL dehydrogenase|Haloarcula marismortui (strain ATCC 43049

Query: 1 AAIRAQLDN 9
A IRA LDN
Sbjct: 288 AVIRAALDN 296




13|SequenceR|70|61|KASELAAIRA

***** No hits found ******


14|SequenceR|75|66|ISPAGKASEL

>sp|SYA_THEVO|ALANINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 ISPAGKASEL 10
ISP+GK+ ++
Sbjct: 838 ISPSGKSKQI 847


>sp|EF1A_THEPD|ELONGATION factor 1-alpha|Thermofilum pendens (strain DSM 2475

Query: 1 ISPAGKASE 9
ISPAG+ E
Sbjct: 127 ISPAGQTRE 135


>sp|ILVD_PYRAB|DIHYDROXY-ACID dehydratase|Pyrococcus abyssi (strain GE5 /

Query: 1 ISPAGK 6
ISPAGK
Sbjct: 303 ISPAGK 308




15|SequenceR|80|71|DPLLHISPAG

>sp|SYT_METB6|THREONINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 2 PLLHISPAG 10
P+LH SP G
Sbjct: 460 PILHCSPTG 468


>sp|SYT_METPE|THREONINE--TRNA ligase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 2 PLLHISPAG 10
P+LH SP G
Sbjct: 455 PILHCSPTG 463


>sp|SYT_METHJ|THREONINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 PLLHISPAG 10
P+LH SP G
Sbjct: 456 PILHCSPTG 464


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 PLLHISPAG 10
P+LH SP G
Sbjct: 457 PILHCSPTG 465


>sp|PRIL_METKA|DNA primase large subunit PriL|Methanopyrus kandleri (strain AV19 /

Query: 2 PLLHISPAG 10
PL+H SP G
Sbjct: 142 PLIHRSPEG 150


>sp|SYT_THESM|THREONINE--TRNA ligase|Thermococcus sibiricus (strain DSM 12597

Query: 3 LLHISPAG 10
LLH SP+G
Sbjct: 472 LLHCSPSG 479


>sp|AATC_DESSY|A-TYPE ATP synthase subunit C|Desulfurococcus sp. (strain SY)

Query: 1 DPLLHI 6
DPLLH+
Sbjct: 262 DPLLHV 267


>sp|AMTAB_METTH|PROBABLE threonylcarbamoyladenosine tRNA

Query: 1 DPLLHISP 8
+PL+HI P
Sbjct: 138 NPLIHIIP 145


>sp|SYT_THEON|THREONINE--TRNA ligase|Thermococcus onnurineus (strain NA1)

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 474 ILHCSPSG 481


>sp|SYT_THEKO|THREONINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 473 ILHCSPSG 480


>sp|SYT_THEGJ|THREONINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 473 ILHCSPSG 480


>sp|SYT_PYRHO|THREONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 472 ILHCSPSG 479


>sp|SYT_PYRFU|THREONINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 472 ILHCSPSG 479


>sp|SYT_PYRAB|THREONINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 472 ILHCSPSG 479


>sp|SYT_METBU|THREONINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 481 ILHCSPSG 488


>sp|SYT_METTP|THREONINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 467 ILHCSPSG 474


>sp|SYT_METAR|THREONINE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 483 ILHCSPSG 490


>sp|CARB_PYRAE|CARBAMOYL phosphate synthase large chain|Pyrobaculum aerophilum (strain ATCC

Query: 2 PLLHISPAG 10
P+ HI P G
Sbjct: 758 PIEHIEPPG 766


>sp|SYT_METMA|THREONINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 480 VLHCSPSG 487


>sp|SYT_METBF|THREONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 481 VLHCSPSG 488


>sp|SYT_METAC|THREONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 LLHISPAG 10
+LH SP+G
Sbjct: 481 VLHCSPSG 488


>sp|Y160_METLZ|PUTATIVE HTH-type transcriptional regulatory protein|Methanocorpusculum

Query: 2 PLLHISPAG 10
PL++ SP G
Sbjct: 114 PLVYASPGG 122


>sp|Y2548_METHJ|PUTATIVE HTH-type transcriptional regulatory protein|Methanospirillum

Query: 2 PLLHISPAG 10
PL++ SP G
Sbjct: 114 PLIYASPGG 122


>sp|SYT_METVS|THREONINE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 465 ILHCSPTG 472


>sp|SYT_METST|THREONINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 464 ILHCSPTG 471


>sp|SYT_METS3|THREONINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 457 ILHCSPTG 464


>sp|SYT_META3|THREONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 473 ILHCSPTG 480


>sp|SYT_METJA|THREONINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 463 ILHCSPTG 470


>sp|SYT_METMP|THREONINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 465 ILHCSPTG 472


>sp|SYT_METM5|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 465 ILHCSPTG 472


>sp|SYT_METM7|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 465 ILHCSPTG 472


>sp|SYT_METM6|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 465 ILHCSPTG 472


>sp|SYG_METKA|GLYCINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 DPLLHISPAG 10
DP+ H S G
Sbjct: 85 DPMTHCSECG 94


>sp|FAU1_HYPBU|PROBABLE ribonuclease FAU-1|Hyperthermus butylicus (strain DSM 5456

Query: 3 LLHISPAG 10
+LH+ P+G
Sbjct: 328 ILHVKPSG 335


>sp|SYT_METKA|THREONINE--TRNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 465 ILHCSPTG 472


>sp|RNZ_METAC|RIBONUCLEASE Z|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 DPLLHISPAG 10
DPL+ PAG
Sbjct: 84 DPLMIYGPAG 93


>sp|Y195_METB6|PUTATIVE HTH-type transcriptional regulatory protein|Methanoregula boonei

Query: 2 PLLHISPAG 10
PL++ SP G
Sbjct: 114 PLVYASPGG 122


>sp|GVPD1_HALSA|PROTEIN GvpD1|Halobacterium salinarum (strain ATCC 700922

Query: 1 DPLLHI 6
DPLLH+
Sbjct: 441 DPLLHV 446


>sp|SYT_METTH|THREONINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 LLHISPAG 10
+LH SP G
Sbjct: 456 ILHCSPTG 463




16|SequenceR|85|76|LHDLTDPLLH

>sp|LEUC_METTH|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanothermobacter

Query: 2 HDLTDPL 8
HDLT PL
Sbjct: 35 HDLTGPL 41


>sp|LEUC_METB6|3-ISOPROPYLMALATE dehydratase large subunit|Methanoregula boonei (strain DSM 21154

Query: 1 LHDLTDPL 8
+HD+T PL
Sbjct: 33 IHDITGPL 40


>sp|LEUC_METJA|ISOPROPYLMALATE/CITRAMALATE isomerase large subunit|Methanocaldococcus jannaschii (strain

Query: 1 LHDLTDPL 8
+HD+T PL
Sbjct: 34 VHDITGPL 41


>sp|KDPB_THEVO|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Thermoplasma volcanium (strain ATCC

Query: 3 DLTDPLL 9
DLTDP++
Sbjct: 594 DLTDPIV 600


>sp|KDPB_THEAC|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Thermoplasma acidophilum (strain ATCC

Query: 3 DLTDPLL 9
DLTDP++
Sbjct: 591 DLTDPIV 597


>sp|GSA_HALLT|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 HDLTDPL 8
HDL DP+
Sbjct: 65 HDLPDPV 71


>sp|RLME_METB6|RIBOSOMAL RNA large subunit methyltransferase|Methanoregula boonei (strain

Query: 3 DLTDPLLH 10
DLTDP++
Sbjct: 85 DLTDPVVQ 92


>sp|LEUC_METMA|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina mazei

Query: 2 HDLTDPL 8
HD+T PL
Sbjct: 32 HDITGPL 38


>sp|LEUC_METAC|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina

Query: 2 HDLTDPL 8
HD+T PL
Sbjct: 32 HDITGPL 38


>sp|COFD_METB6|2-PHOSPHO-L-LACTATE transferase|Methanoregula boonei (strain DSM 21154

Query: 1 LHDLTDPL 8
+HD+ DP+
Sbjct: 261 IHDIRDPV 268


>sp|CHEA_HALS3|CHEMOTAXIS protein CheA|Halobacterium salinarum (strain ATCC 29341

Query: 1 LHDLTDPLLH 10
L +++DPL+H
Sbjct: 396 LTEISDPLMH 405


>sp|UPPS_PYRAE|TRITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE synthase (geranylgeranyl-diphosphate specific)|Pyrobaculum

Query: 4 LTDPLLH 10
L DPL+H
Sbjct: 90 LEDPLIH 96


>sp|DABA_HALMA|PROBABLE inorganic carbon transporter subunit|Haloarcula marismortui (strain

Query: 2 HDLTDPLLH 10
H+ DPL+H
Sbjct: 430 HEFCDPLVH 438


>sp|RL18A_METJA|LARGE ribosomal subunit protein eL20|Methanocaldococcus jannaschii

Query: 3 DLTDPLL 9
D+TDP+L
Sbjct: 64 DVTDPVL 70


>sp|LEUC_CALMQ|3-ISOPROPYLMALATE dehydratase large subunit|Caldivirga maquilingensis (strain ATCC

Query: 1 LHDLTDPLLH 10
HD+ D +LH
Sbjct: 93 FHDVGDGILH 102


>sp|Y672_PYRHO|UPF0252 protein PH0672|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LHDLTDPLLH 10
H + DP LH
Sbjct: 126 FHFMEDPTLH 135


>sp|SPEE_SACI7|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 3 DLTDPL 8
DLTDP+
Sbjct: 159 DLTDPI 164


>sp|SPEE_SACI6|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain M.16.4 /

Query: 3 DLTDPL 8
DLTDP+
Sbjct: 159 DLTDPI 164


>sp|SPEE_SACI4|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain M.14.25 /

Query: 3 DLTDPL 8
DLTDP+
Sbjct: 159 DLTDPI 164


>sp|SPEE_SACI3|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain M.16.27)

Query: 3 DLTDPL 8
DLTDP+
Sbjct: 159 DLTDPI 164


>sp|SPEE_SACI2|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 3 DLTDPL 8
DLTDP+
Sbjct: 159 DLTDPI 164


>sp|SPEE_SACI1|POLYAMINE aminopropyltransferase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 3 DLTDPL 8
DLTDP+
Sbjct: 159 DLTDPI 164


>sp|DNLI2_HALWD|DNA ligase 2|Haloquadratum walsbyi (strain DSM 16790

Query: 1 LHDLTDPL 8
+ D+TDPL
Sbjct: 336 MEDVTDPL 343


>sp|SPEE_SACS2|POLYAMINE aminopropyltransferase|Saccharolobus solfataricus (strain ATCC

Query: 3 DLTDPL 8
DLTDP+
Sbjct: 159 DLTDPI 164


>sp|ACDA1_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 HDLTDPL 8
HDLTD +
Sbjct: 265 HDLTDKM 271


>sp|Y284_PYRHO|UPF0273 protein PH0284|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LHDLTD 6
+HDLTD
Sbjct: 107 VHDLTD 112


>sp|Y258_PYRAB|UPF0273 protein PYRAB02580|Pyrococcus abyssi (strain GE5 /

Query: 1 LHDLTD 6
+HDLTD
Sbjct: 107 VHDLTD 112


>sp|Y1931_PYRFU|UPF0273 protein PF1931|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LHDLTD 6
+HDLTD
Sbjct: 107 VHDLTD 112


>sp|Y1590_THEKO|UPF0273 protein TK1590|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 LHDLTD 6
+HDLTD
Sbjct: 107 VHDLTD 112


>sp|SPEE_SULTO|POLYAMINE aminopropyltransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 DLTDPL 8
DLTDP+
Sbjct: 158 DLTDPI 163


>sp|Y2265_METBU|PUTATIVE nickel insertion protein|Methanococcoides burtonii (strain DSM 6242

Query: 2 HDLTDPLLH 10
HD +D +LH
Sbjct: 351 HDRSDEVLH 359


>sp|SPEE_SULAC|POLYAMINE aminopropyltransferase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 DLTDPL 8
DLTDP+
Sbjct: 158 DLTDPI 163


>sp|PDXT_METKA|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Methanopyrus kandleri (strain

Query: 2 HDLTDPLL 9
HDL PLL
Sbjct: 64 HDLVKPLL 71


>sp|LEUC1_METKA|3-ISOPROPYLMALATE dehydratase large subunit 1|Methanopyrus kandleri (strain AV19 /

Query: 1 LHDLTDPL 8
+HD+T P+
Sbjct: 33 VHDITGPI 40




17|SequenceR|90|81|QVMTKLHDLT

>sp|DNAG_STAMF|DNA primase DnaG|Staphylothermus marinus (strain ATCC 43588

Query: 1 QVMTKLHD 8
QVMTK+H+
Sbjct: 52 QVMTKIHN 59


>sp|GYRB_ARCFU|DNA gyrase subunit B|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 VMTKLH 7
VMTKLH
Sbjct: 97 VMTKLH 102


>sp|DAPA_METTP|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 VMTKLHDLT 10
V+TK+ DLT
Sbjct: 283 VLTKMSDLT 291


>sp|Y2041_ARCFU|UNCHARACTERIZED protein AF_2041|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 MTKLHDLT 10
+ K+HDLT
Sbjct: 66 LYKIHDLT 73




18|SequenceR|95|86|REVKEQVMTK

>sp|TRPB1_METMA|TRYPTOPHAN synthase beta chain 1|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 REVKEQVMTK 10
REVKEQ M K
Sbjct: 216 REVKEQAMEK 225


>sp|TRPB1_METAC|TRYPTOPHAN synthase beta chain 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 REVKEQVMTK 10
+EVKEQ M K
Sbjct: 216 KEVKEQAMEK 225


>sp|TRPB_METJA|TRYPTOPHAN synthase beta chain|Methanocaldococcus jannaschii (strain ATCC

Query: 1 REVKEQVMTK 10
+E+KEQ++ K
Sbjct: 221 KELKEQILEK 230


>sp|TRPB_METVO|TRYPTOPHAN synthase beta chain|Methanococcus voltae

Query: 1 REVKEQVMTK 10
+EVK+Q+M +
Sbjct: 215 KEVKKQIMEQ 224


>sp|Y1546_PYRCJ|UPF0282 protein Pcal_1546|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 REVKEQVM 8
REV+EQ++
Sbjct: 53 REVREQIL 60




19|SequenceR|100|91|KQALLREVKE

>sp|GATA_SACS2|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Saccharolobus solfataricus (strain

Query: 1 KQALLREVKE 10
K+ +L+EVKE
Sbjct: 47 KEEVLKEVKE 56


>sp|Y1182_METJA|UNCHARACTERIZED protein MJ1182|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KQALLREVKE 10
K ++RE+KE
Sbjct: 65 KDYIIREIKE 74




20|SequenceR|105|96|MHEYSKQALL

>sp|Y527_METM7|UPF0200 protein MmarC7_0527|Methanococcus maripaludis (strain C7 /

Query: 2 HEYSKQALL 10
HE SKQ L+
Sbjct: 37 HETSKQGLI 45




21|SequenceR|110|101|IRIKAMHEYS

>sp|NRPR_METJA|GLOBAL nitrogen regulator NrpR|Methanocaldococcus jannaschii (strain ATCC

Query: 1 IRIKAMHE 8
I +KAMHE
Sbjct: 522 IELKAMHE 529


>sp|HIS4_SULTO|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Sulfurisphaera tokodaii (strain

Query: 1 IRIKAMHEYS 10
IRIK + EY+
Sbjct: 183 IRIKGLKEYA 192


>sp|CUTA_ARCFU|DIVALENT-CATION tolerance protein CutA|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 IKAMHEYS 10
+KAMH Y+
Sbjct: 70 VKAMHSYT 77


>sp|SYFA_THEKO|PHENYLALANINE--TRNA ligase alpha subunit|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 RIKAMHEY 9
R+KA HE+
Sbjct: 309 RVKAAHEH 316


>sp|SAHH_SULTO|ADENOSYLHOMOCYSTEINASE tokodaii (strain DSM 16993

Query: 1 IRIKAMHE 8
IR+KAM E
Sbjct: 153 IRLKAMEE 160


>sp|SAHH_SULAC|ADENOSYLHOMOCYSTEINASE acidocaldarius (strain ATCC 33909

Query: 1 IRIKAMHE 8
IR+KAM E
Sbjct: 153 IRLKAMEE 160


>sp|SYFA_THESM|PHENYLALANINE--TRNA ligase alpha subunit|Thermococcus sibiricus (strain DSM 12597

Query: 2 RIKAMHEY 9
R+KA HE+
Sbjct: 311 RVKASHEH 318


>sp|TRM56_PICTO|TRNA (cytidine(56)-2'-O)-methyltransferase|Picrophilus torridus (strain

Query: 1 IRIKAMHE 8
+RIK +HE
Sbjct: 317 LRIKKLHE 324




22|SequenceR|115|106|PAERAIRIKA

>sp|Y511_METAC|UPF0228 protein MA_0511|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PAERAIRIK 9
P E AIRIK
Sbjct: 171 PKEDAIRIK 179


>sp|Y4032_METAC|UPF0228 protein MA_4032|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PAERAIRIK 9
P E AIRIK
Sbjct: 170 PEEDAIRIK 178


>sp|RS4_SACS2|SMALL ribosomal subunit protein uS4|Saccharolobus solfataricus (strain

Query: 1 PAERAIRIK 9
PAERA+R K
Sbjct: 63 PAERAVREK 71


>sp|RS4_SACI7|SMALL ribosomal subunit protein uS4|Saccharolobus islandicus (strain

Query: 1 PAERAIRIK 9
PAERA+R K
Sbjct: 63 PAERAVREK 71


>sp|RS4_SACI6|SMALL ribosomal subunit protein uS4|Saccharolobus islandicus (strain

Query: 1 PAERAIRIK 9
PAERA+R K
Sbjct: 63 PAERAVREK 71


>sp|RS4_SACI4|SMALL ribosomal subunit protein uS4|Saccharolobus islandicus (strain

Query: 1 PAERAIRIK 9
PAERA+R K
Sbjct: 63 PAERAVREK 71


>sp|RS4_SACI3|SMALL ribosomal subunit protein uS4|Saccharolobus islandicus (strain

Query: 1 PAERAIRIK 9
PAERA+R K
Sbjct: 63 PAERAVREK 71


>sp|RS4_SACI2|SMALL ribosomal subunit protein uS4|Saccharolobus islandicus (strain

Query: 1 PAERAIRIK 9
PAERA+R K
Sbjct: 63 PAERAVREK 71


>sp|RS4_SACI1|SMALL ribosomal subunit protein uS4|Saccharolobus islandicus (strain

Query: 1 PAERAIRIK 9
PAERA+R K
Sbjct: 63 PAERAVREK 71


>sp|RS4_METS5|SMALL ribosomal subunit protein uS4|Metallosphaera sedula (strain ATCC

Query: 1 PAERAIRIK 9
PAERA+R K
Sbjct: 63 PAERAVREK 71


>sp|FTR_ARCFU|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PAERAIRIKA 10
PAE I IKA
Sbjct: 51 PAEAGIEIKA 60


>sp|Y1314_PYRHO|UPF0128 protein PH1314|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PAERAIRIK 9
PAER R+K
Sbjct: 18 PAERRFRMK 26


>sp|Y832_PYRAB|UPF0128 protein PYRAB08320|Pyrococcus abyssi (strain GE5 /

Query: 1 PAERAIRIK 9
PAER R+K
Sbjct: 15 PAERRFRMK 23


>sp|FAU1_PYRAR|PROBABLE ribonuclease FAU-1|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 PAERAIRIK 9
PAE A+R++
Sbjct: 167 PAEEAVRLR 175


>sp|RL3_METLZ|LARGE ribosomal subunit protein uL3|Methanocorpusculum labreanum (strain

Query: 1 PAERAIRIKA 10
PA+R +RI++
Sbjct: 300 PAKRLVRIRS 309


>sp|RL3_METB6|LARGE ribosomal subunit protein uL3|Methanoregula boonei (strain DSM

Query: 1 PAERAIRIK 9
PA+R IRI+
Sbjct: 304 PAKRLIRIR 312


>sp|GLNK2_METJA|NITROGEN regulatory protein GlnK2|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PAERAIRIKA 10
P ER +R++
Sbjct: 95 PVERVVRVRT 104


>sp|CAS7_THETK|CRISPR-ASSOCIATED protein Cas7/Cst2/DevR|Thermoproteus tenax (strain ATCC 35583

Query: 3 ERAIRIKA 10
ERA+RIK+
Sbjct: 211 ERALRIKS 218


>sp|GLNK1_METJA|NITROGEN regulatory protein GlnK1|Methanocaldococcus jannaschii (strain ATCC

Query: 1 PAERAIRIKA 10
P ER +R++
Sbjct: 95 PVERVVRVRT 104




23|SequenceR|120|111|CNCESPAERA

>sp|GRPE_METMZ|PROTEIN GrpE|Methanosarcina mazei (Methanosarcina frisia)

Query: 2 NCESPAERA 10
N ESPAE+A
Sbjct: 27 NSESPAEKA 35


>sp|GRPE_METMA|PROTEIN GrpE|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 NCESPAERA 10
N ESPAE+A
Sbjct: 27 NSESPAEKA 35


>sp|DKFP_METJA|FRUCTOSE-BISPHOSPHATE aldolase/6-deoxy-5-ketofructose 1-phosphate

Query: 3 CESPAER 9
C++PAER
Sbjct: 219 CDNPAER 225


>sp|DNLJ_NATPD|DNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 CESPAER 9
CESP ER
Sbjct: 432 CESPLER 438


>sp|NTPPA_PYRAB|DTTP/UTP pyrophosphatase|Pyrococcus abyssi (strain GE5 /

Query: 2 NCESPAERA 10
N SP ERA
Sbjct: 33 NARSPKERA 41


>sp|Y1653_METJA|PUTATIVE ribosomal RNA large subunit|Methanocaldococcus jannaschii (strain

Query: 1 CNCESPAE 8
C+C P E
Sbjct: 327 CSCSQPLE 334


>sp|PYRG_METKA|CTP synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 CNCESPAE 8
C CE P +
Sbjct: 210 CRCERPLD 217


>sp|COFH_METMJ|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanoculleus marisnigri (strain ATCC

Query: 2 NCESPAERA 10
+CES A+RA
Sbjct: 224 HCESEADRA 232


>sp|DP2L_METKA|DNA polymerase II large subunit|Methanopyrus kandleri (strain AV19 /

Query: 1 CNCESP 6
C+CE P
Sbjct: 778 CDCEEP 783


>sp|PURQ_NATPD|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Natronomonas pharaonis (strain ATCC 35678

Query: 1 CNCESPAERA 10
NC+ AERA
Sbjct: 11 SNCDRDAERA 20




24|SequenceR|125|116|PPGAPCNCES

>sp|DTDA_METKA|D-AMINOACYL-TRNA deacylase|Methanopyrus kandleri (strain AV19 /

Query: 2 PGAPC 6
PGAPC
Sbjct: 150 PGAPC 154


>sp|ATGT_METS3|TRNA-GUANINE(15) transglycosylase|Methanobrevibacter smithii (strain ATCC 35061

Query: 5 PCNCE 9
PC+CE
Sbjct: 272 PCSCE 276


>sp|SYE_METJA|GLUTAMATE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GAPCNC 8
G PC C
Sbjct: 200 GVPCKC 205


>sp|GGGPS_IGNH4|GERANYLGERANYLGLYCERYL phosphate synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 PGAPC 6
PG+PC
Sbjct: 77 PGSPC 81


>sp|SYE_METVS|GLUTAMATE--TRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 3 GAPCNC 8
G PC C
Sbjct: 202 GIPCKC 207


>sp|SYE_METM7|GLUTAMATE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 3 GAPCNC 8
G PC C
Sbjct: 202 GIPCKC 207


>sp|SYE_METM6|GLUTAMATE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 3 GAPCNC 8
G PC C
Sbjct: 202 GIPCKC 207


>sp|SYE_METMP|GLUTAMATE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 3 GAPCNC 8
G PC C
Sbjct: 202 GLPCKC 207


>sp|SYV_METTH|VALINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 PGAPCNCES 10
PG C C S
Sbjct: 438 PGITCECGS 446


>sp|CSM3_METTH|CRISPR system Cms endoribonuclease Csm3|Methanothermobacter

Query: 3 GAPCNC 8
G PC C
Sbjct: 71 GGPCKC 76




25|SequenceR|130|121|KGRKGPPGAP

>sp|PRIL_SULTO|DNA primase large subunit PriL|Sulfurisphaera tokodaii (strain DSM

Query: 1 KGRKGPP 7
KGRK PP
Sbjct: 215 KGRKTPP 221


>sp|Y520_METJA|PUTATIVE NADH-ubiquinone oxidoreductase MJ0520|Methanocaldococcus

Query: 1 KGRKGPP 7
+GR GPP
Sbjct: 37 QGRPGPP 43


>sp|HELS_AERPE|ATP-DEPENDENT DNA helicase Hel308|Aeropyrum pernix (strain ATCC 700893

Query: 3 RKGPPGAP 10
R+GPP AP
Sbjct: 110 REGPPEAP 117


>sp|PINA_SULAC|HOLLIDAY junction branch migration ATPase|Sulfolobus acidocaldarius (strain

Query: 1 KGRKGPPGA 9
K +KG PG+
Sbjct: 149 KAKKGKPGS 157


>sp|KCY_HALWD|CYTIDYLATE kinase|Haloquadratum walsbyi (strain DSM 16790

Query: 5 GPPGA 9
GPPGA
Sbjct: 7 GPPGA 11


>sp|KAD6_THEVO|PUTATIVE adenylate kinase|Thermoplasma volcanium (strain ATCC 51530

Query: 5 GPPGA 9
GPPGA
Sbjct: 9 GPPGA 13


>sp|HCGB_METJA|PYRIDINOL guanylyltransferase HcgB|Methanocaldococcus jannaschii (strain ATCC

Query: 1 KGRKGPPGA 9
+GR G PG+
Sbjct: 102 RGRLGAPGS 110


>sp|KAD_HALMA|ADENYLATE kinase|Haloarcula marismortui (strain ATCC 43049

Query: 5 GPPGA 9
GPPGA
Sbjct: 10 GPPGA 14


>sp|NDK_HYPBU|NUCLEOSIDE diphosphate kinase|Hyperthermus butylicus (strain DSM 5456

Query: 2 GRKGPPGA 9
GRK PPG
Sbjct: 95 GRKAPPGT 102


>sp|PUR5_THEGJ|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 KGRKGPPGAP 10
K R+G PG P
Sbjct: 30 KFRRGKPGEP 39


>sp|Y274_PYRHO|PUTATIVE GTPase PH0274|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GRKGPPGA 9
G GPPGA
Sbjct: 51 GITGPPGA 58


>sp|Y249_PYRAB|PUTATIVE GTPase PYRAB02490|Pyrococcus abyssi (strain GE5 /

Query: 2 GRKGPPGA 9
G GPPGA
Sbjct: 49 GITGPPGA 56


>sp|NDK_STAMF|NUCLEOSIDE diphosphate kinase|Staphylothermus marinus (strain ATCC 43588

Query: 2 GRKGPPG 8
GR+ PPG
Sbjct: 95 GREAPPG 101


>sp|TRUA_METPE|TRNA pseudouridine synthase A|Methanosphaerula palustris (strain ATCC

Query: 1 KGRKGPPGAP 10
K R+ PP AP
Sbjct: 205 KCRRNPPAAP 214


>sp|AATB_NITMS|A-TYPE ATP synthase subunit B|Nitrosopumilus maritimus (strain SCM1)

Query: 2 GRKGPPG 8
GRKG PG
Sbjct: 273 GRKGYPG 279


>sp|ACYP_PYRAR|ACYLPHOSPHATASE arsenaticum (strain DSM 13514

Query: 2 GRKGPPGA 9
R GPPGA
Sbjct: 63 ARVGPPGA 70


>sp|AATB_CENSY|A-TYPE ATP synthase subunit B|Cenarchaeum symbiosum (strain A)

Query: 2 GRKGPPG 8
GRKG PG
Sbjct: 273 GRKGYPG 279


>sp|SYM_PYRIL|METHIONINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 6 PPGAP 10
PPGAP
Sbjct: 408 PPGAP 412


>sp|DPOL2_AERPE|DNA polymerase 2|Aeropyrum pernix (strain ATCC 700893

Query: 1 KGRKGPPG 8
K RK PPG
Sbjct: 481 KFRKSPPG 488


>sp|DNAJ_HALSA|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 700922

Query: 1 KGRKGPPGAP 10
+G G PGAP
Sbjct: 256 EGAPGEPGAP 265


>sp|DNAJ_HALS3|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 29341

Query: 1 KGRKGPPGAP 10
+G G PGAP
Sbjct: 256 EGAPGEPGAP 265


>sp|DNAJ_METAC|CHAPERONE protein DnaJ|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 KGRKGPPGAP 10
+G G PGAP
Sbjct: 235 EGDSGEPGAP 244


>sp|ACYP_PYRCJ|ACYLPHOSPHATASE calidifontis (strain DSM 21063

Query: 2 GRKGPPGA 9
R GPPGA
Sbjct: 78 ARVGPPGA 85




26|SequenceR|135|126|GRRGRKGRKG

>sp|GCSPB_STAMF|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Staphylothermus

Query: 4 GRKGRKG 10
G KGRKG
Sbjct: 16 GNKGRKG 22


>sp|DACZ_METJA|DIADENYLATE cyclase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 GRKGRKG 10
GR+GR+G
Sbjct: 173 GREGREG 179


>sp|TOP6B_METJA|TYPE 2 DNA topoisomerase 6|Methanocaldococcus jannaschii (strain ATCC

Query: 1 GRRGRKGRK 9
GR+G +GR+
Sbjct: 513 GRQGDEGRR 521


>sp|RPO1C_METJA|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanocaldococcus jannaschii (strain

Query: 1 GRRGRKGRKG 10
GR G G KG
Sbjct: 787 GRHGVAGEKG 796


>sp|DACZ_HALVD|DIADENYLATE cyclase|Haloferax volcanii (strain ATCC 29605

Query: 4 GRKGRKG 10
G+KG+KG
Sbjct: 137 GKKGQKG 143




27|SequenceR|140|131|PPGSEGRRGR

>sp|NEP1_THEVO|RIBOSOMAL RNA small subunit methyltransferase|Thermoplasma volcanium

Query: 2 PGSEGRRGR 10
PG RRGR
Sbjct: 54 PGESKRRGR 62


>sp|THII_PYRAE|TRNA sulfurtransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PPGSEGRRG 9
PP S+G RG
Sbjct: 475 PPSSQGERG 483


>sp|FAU1_PYRNV|PROBABLE ribonuclease FAU-1|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 PPGSEGRRGR 10
PPG+ RRGR
Sbjct: 222 PPGALLRRGR 231


>sp|RFCL_NATPD|REPLICATION factor C large subunit|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PPGSEGRRGR 10
P GSEG R R
Sbjct: 210 PEGSEGSRDR 219


>sp|BRIX_METTH|PROBABLE Brix domain-containing ribosomal biogenesis|Methanothermobacter

Query: 1 PPGSEG 6
PPGSEG
Sbjct: 97 PPGSEG 102


>sp|FAU1_PYRIL|PROBABLE ribonuclease FAU-1|Pyrobaculum islandicum (strain DSM 4184

Query: 1 PPGSEGRRGR 10
PPG+ RRG+
Sbjct: 223 PPGTLLRRGK 232


>sp|ACDD_METJA|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanocaldococcus

Query: 2 PGSEGRRGR 10
P SEG RG+
Sbjct: 95 PKSEGGRGK 103


>sp|PYRK_METKA|PROBABLE dihydroorotate dehydrogenase B (NAD(+)),|Methanopyrus kandleri

Query: 3 GSEGRRG 9
GSEGR+G
Sbjct: 160 GSEGRKG 166


>sp|NIFK_METBA|NITROGENASE molybdenum-iron protein beta chain|Methanosarcina barkeri

Query: 1 PPGSEGRRGR 10
PP E RGR
Sbjct: 288 PPELEDERGR 297




28|SequenceR|145|136|PGPQGPPGSE

>sp|MUTS_HALWD|DNA mismatch repair protein MutS|Haloquadratum walsbyi (strain DSM

Query: 1 PGPQGPP 7
P P+GPP
Sbjct: 17 PQPEGPP 23


>sp|SYE_ARCFU|GLUTAMATE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PGPQGPP 7
P P GPP
Sbjct: 100 PNPNGPP 106


>sp|RS3A_AERPE|SMALL ribosomal subunit protein eS1|Aeropyrum pernix (strain ATCC 700893

Query: 1 PGPQGP 6
PGP GP
Sbjct: 195 PGPNGP 200


>sp|RF1_METVS|PEPTIDE chain release factor subunit|Methanococcus vannielii (strain ATCC

Query: 3 PQGPPGSE 10
P+G PG+E
Sbjct: 96 PRGGPGTE 103


>sp|RF1_METMP|PEPTIDE chain release factor subunit|Methanococcus maripaludis (strain DSM

Query: 3 PQGPPGSE 10
P+G PG+E
Sbjct: 96 PRGGPGTE 103


>sp|RF1_METM7|PEPTIDE chain release factor subunit|Methanococcus maripaludis (strain C7 /

Query: 3 PQGPPGSE 10
P+G PG+E
Sbjct: 96 PRGGPGTE 103


>sp|RF1_METM6|PEPTIDE chain release factor subunit|Methanococcus maripaludis (strain C6 /

Query: 3 PQGPPGSE 10
P+G PG+E
Sbjct: 96 PRGGPGTE 103


>sp|RF1_METM5|PEPTIDE chain release factor subunit|Methanococcus maripaludis (strain C5 /

Query: 3 PQGPPGSE 10
P+G PG+E
Sbjct: 96 PRGGPGTE 103


>sp|RF1_METS3|PEPTIDE chain release factor subunit|Methanobrevibacter smithii (strain

Query: 3 PQGPPGSE 10
P+G PG+E
Sbjct: 96 PRGGPGTE 103


>sp|SYE_METBU|GLUTAMATE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PGPQGPP 7
P P GPP
Sbjct: 110 PNPNGPP 116


>sp|RFCL_THEPD|REPLICATION factor C large subunit|Thermofilum pendens (strain DSM 2475

Query: 5 GPPGS 9
GPPGS
Sbjct: 54 GPPGS 58


>sp|RFCL_PYRHO|REPLICATION factor C large subunit|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 GPPGS 9
GPPGS
Sbjct: 50 GPPGS 54


>sp|RFCL_PYRFU|REPLICATION factor C large subunit|Pyrococcus furiosus (strain ATCC 43587

Query: 5 GPPGS 9
GPPGS
Sbjct: 50 GPPGS 54


>sp|RFCL_PYRAB|REPLICATION factor C large subunit|Pyrococcus abyssi (strain GE5 /

Query: 5 GPPGS 9
GPPGS
Sbjct: 50 GPPGS 54


>sp|KCY_SULTO|CYTIDYLATE kinase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_SULAC|CYTIDYLATE kinase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_SACS2|CYTIDYLATE kinase|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_SACI7|CYTIDYLATE kinase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_SACI6|CYTIDYLATE kinase|Saccharolobus islandicus (strain M.16.4 /

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_SACI4|CYTIDYLATE kinase|Saccharolobus islandicus (strain M.14.25 /

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_SACI3|CYTIDYLATE kinase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_SACI2|CYTIDYLATE kinase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_SACI1|CYTIDYLATE kinase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_METTP|CYTIDYLATE kinase|Methanothrix thermoacetophila (strain DSM 6194

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_METPE|CYTIDYLATE kinase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_IGNH4|CYTIDYLATE kinase|Ignicoccus hospitalis (strain KIN4/I /

Query: 5 GPPGS 9
GPPGS
Sbjct: 8 GPPGS 12


>sp|KCY_DESA1|CYTIDYLATE kinase|Desulfurococcus amylolyticus (strain DSM 18924

Query: 5 GPPGS 9
GPPGS
Sbjct: 8 GPPGS 12


>sp|KCY_ARCFU|CYTIDYLATE kinase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_AERPE|CYTIDYLATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 5 GPPGS 9
GPPGS
Sbjct: 4 GPPGS 8


>sp|RADB_METTH|DNA repair and recombination protein|Methanothermobacter

Query: 5 GPPGS 9
GPPGS
Sbjct: 37 GPPGS 41


>sp|SYE_METTP|GLUTAMATE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 PGPQGPP 7
P P GPP
Sbjct: 107 PNPNGPP 113


>sp|Y1533_METJA|UNCHARACTERIZED KH and PIN-domain containing|Methanocaldococcus jannaschii (strain

Query: 5 GPPGS 9
GPPGS
Sbjct: 291 GPPGS 295


>sp|RADB_METST|DNA repair and recombination protein|Methanosphaera stadtmanae

Query: 5 GPPGS 9
GPPGS
Sbjct: 37 GPPGS 41


>sp|KCY_METMJ|CYTIDYLATE kinase|Methanoculleus marisnigri (strain ATCC 35101

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|SYP_CALMQ|PROLINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 GPQGPPGS 9
GPQG P S
Sbjct: 4 GPQGRPRS 11


>sp|RFCL_METM7|REPLICATION factor C large subunit|Methanococcus maripaludis (strain C7 /

Query: 5 GPPGS 9
GPPGS
Sbjct: 46 GPPGS 50


>sp|RFCL_METMP|REPLICATION factor C large subunit|Methanococcus maripaludis (strain DSM

Query: 5 GPPGS 9
GPPGS
Sbjct: 46 GPPGS 50


>sp|RFCL_METM6|REPLICATION factor C large subunit|Methanococcus maripaludis (strain C6 /

Query: 5 GPPGS 9
GPPGS
Sbjct: 46 GPPGS 50


>sp|RFCL_METM5|REPLICATION factor C large subunit|Methanococcus maripaludis (strain C5 /

Query: 5 GPPGS 9
GPPGS
Sbjct: 46 GPPGS 50


>sp|RF1_METST|PEPTIDE chain release factor subunit|Methanosphaera stadtmanae (strain ATCC

Query: 3 PQGPPGSE 10
P+G PG+E
Sbjct: 96 PKGGPGTE 103


>sp|CDC6V_METTF|ORC1-TYPE DNA replication protein|Methanothermobacter thermautotrophicus

Query: 5 GPPGS 9
GPPGS
Sbjct: 54 GPPGS 58


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 2 GPQGPPGS 9
GP+G PG+
Sbjct: 440 GPEGHPGA 447


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 2 GPQGPPGS 9
GP+G PG+
Sbjct: 440 GPEGHPGA 447


>sp|CDC6Z_METTF|ORC1-TYPE DNA replication protein|Methanothermobacter thermautotrophicus

Query: 5 GPPGS 9
GPPGS
Sbjct: 54 GPPGS 58


>sp|Y609_METTH|UPF0179 protein MTH_609|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 PGPQGPPGSE 10
PG Q P G+E
Sbjct: 126 PGKQCPAGNE 135


>sp|RF1_METTH|PEPTIDE chain release factor subunit|Methanothermobacter thermautotrophicus

Query: 3 PQGPPGSE 10
P+G PG+E
Sbjct: 96 PRGGPGTE 103


>sp|PSTK_METKA|L-SERYL-TRNA(SEC) kinase|Methanopyrus kandleri (strain AV19 /

Query: 5 GPPGS 9
GPPGS
Sbjct: 8 GPPGS 12


>sp|KCY_HALSA|CYTIDYLATE kinase|Halobacterium salinarum (strain ATCC 700922

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|KCY_HALS3|CYTIDYLATE kinase|Halobacterium salinarum (strain ATCC 29341

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|RNP4_AERPE|RIBONUCLEASE P protein component 4|Aeropyrum pernix (strain ATCC 700893

Query: 2 GPQGPP 7
GPQGPP
Sbjct: 138 GPQGPP 143


>sp|SYE_METAR|GLUTAMATE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 PGPQGPP 7
P P GPP
Sbjct: 112 PNPNGPP 118


>sp|RFCL_METAR|REPLICATION factor C large subunit|Methanocella arvoryzae (strain DSM 22066

Query: 1 PGPQGPPGSE 10
P P+ PP +E
Sbjct: 531 PEPEKPPAAE 540


>sp|ILVD_ARCFU|DIHYDROXY-ACID dehydratase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GPQGPPG 8
GP+G PG
Sbjct: 430 GPKGAPG 436


>sp|HIS4_METBU|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanococcoides burtonii

Query: 4 QGPPGSE 10
QG PGSE
Sbjct: 21 QGVPGSE 27


>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 2 GPQGPPG 8
GP GP G
Sbjct: 217 GPMGPTG 223


>sp|Y1642_METM7|UPF0251 protein MmarC7_1642|Methanococcus maripaludis (strain C7 /

Query: 3 PQGPPGSE 10
P G PG+E
Sbjct: 25 PAGTPGTE 32


>sp|ILVD_METST|DIHYDROXY-ACID dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 GPQGPPG 8
GP+G PG
Sbjct: 432 GPKGGPG 438


>sp|KCY_HALLT|CYTIDYLATE kinase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 5 GPPGS 9
GPPGS
Sbjct: 7 GPPGS 11


>sp|HIS4_METTP|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanothrix thermoacetophila

Query: 4 QGPPGSE 10
QG PGSE
Sbjct: 21 QGVPGSE 27


>sp|ILVD_PYRFU|DIHYDROXY-ACID dehydratase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 GPQGPPG 8
GP+G PG
Sbjct: 432 GPKGGPG 438


>sp|ILVD_PYRAB|DIHYDROXY-ACID dehydratase|Pyrococcus abyssi (strain GE5 /

Query: 2 GPQGPPG 8
GP+G PG
Sbjct: 432 GPKGGPG 438


>sp|HIS4_METMA|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanosarcina mazei (strain

Query: 4 QGPPGSE 10
QG PGSE
Sbjct: 21 QGVPGSE 27




29|SequenceR|150|141|GPPGQPGPQG

>sp|SYM_PYRAR|METHIONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 PPGQPGPQ 9
PPG+P P+
Sbjct: 410 PPGKPSPE 417


>sp|AGLB_METJA|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GPPGQPGP 8
PPG P P
Sbjct: 111 APPGHPLP 118


>sp|PURP_METTH|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanothermobacter thermautotrophicus

Query: 2 PPGQPGP 8
PPG GP
Sbjct: 289 PPGMNGP 295


>sp|RFCL_METAR|REPLICATION factor C large subunit|Methanocella arvoryzae (strain DSM 22066

Query: 1 GPPGQPGPQ 9
GP G P PQ
Sbjct: 518 GPAGAPAPQ 526


>sp|Y1232_METJA|UNCHARACTERIZED protein MJ1232|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 GQPGPQG 10
G PGP+G
Sbjct: 56 GVPGPKG 62


>sp|Y811_METTH|UPF0305 protein MTH_811|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 PPGQPGPQG 10
PPG P P G
Sbjct: 110 PPGTPFPGG 118


>sp|DNLI_CENSY|DNA ligase|Cenarchaeum symbiosum (strain A)

Query: 2 PPGQPG 7
P GQPG
Sbjct: 583 PDGQPG 588


>sp|KATG_ARCFU|CATALASE-PEROXIDASE fulgidus (strain ATCC 49558

Query: 1 GPPGQPGPQG 10
GP G P P G
Sbjct: 213 GPGGNPDPLG 222


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 4 GQPGPQG 10
G PGP+G
Sbjct: 185 GYPGPEG 191


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 GPPGQPG 7
GP G PG
Sbjct: 440 GPEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 GPPGQPG 7
GP G PG
Sbjct: 440 GPEGHPG 446


>sp|Y1659_ARCFU|UNCHARACTERIZED protein AF_1659|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PGQPGPQG 10
PG+PG G
Sbjct: 61 PGEPGEDG 68


>sp|PDXT_PYRAR|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Pyrobaculum arsenaticum (strain

Query: 1 GPPGQP 6
GP GQP
Sbjct: 100 GPTGQP 105


>sp|PURP_CALMQ|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Caldivirga maquilingensis (strain ATCC

Query: 2 PPGQPGP 8
PPG GP
Sbjct: 262 PPGMIGP 268


>sp|PYRH_IGNH4|URIDYLATE kinase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 PPGQPGPQ 9
PP QPG +
Sbjct: 144 PPSQPGAK 151


>sp|SYA_PYRAR|ALANINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 4 GQPGPQG 10
GQP P+G
Sbjct: 569 GQPPPEG 575


>sp|CARA_PYRAE|CARBAMOYL phosphate synthase small chain|Pyrobaculum aerophilum (strain ATCC

Query: 2 PPGQPGPQ 9
P PGPQ
Sbjct: 321 PEASPGPQ 328




30|SequenceR|155|146|KDGKPGPPGQ

>sp|Y520_METJA|PUTATIVE NADH-ubiquinone oxidoreductase MJ0520|Methanocaldococcus

Query: 3 GKPGPP 8
G+PGPP
Sbjct: 38 GRPGPP 43


>sp|Y1232_METJA|UNCHARACTERIZED protein MJ1232|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 DGKPGPPG 9
DG PGP G
Sbjct: 55 DGVPGPKG 62


>sp|RAD50_HALSA|DNA double-strand break repair Rad50|Halobacterium salinarum (strain

Query: 1 KDGKPGPPGQ 10
KDG+P P Q
Sbjct: 772 KDGEPLEPAQ 781


>sp|NADC_ARCFU|PROBABLE nicotinate-nucleotide pyrophosphorylase

Query: 1 KDGKPGPPG 9
KDG+P PG
Sbjct: 48 KDGEPIKPG 56


>sp|NDK_STAMF|NUCLEOSIDE diphosphate kinase|Staphylothermus marinus (strain ATCC 43588

Query: 2 DGKPGPPG 9
DG+ PPG
Sbjct: 94 DGREAPPG 101


>sp|Y1659_ARCFU|UNCHARACTERIZED protein AF_1659|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 DGKPGPPGQ 10
D KPG PG+
Sbjct: 58 DWKPGEPGE 66


>sp|ACSA_PYRAE|ACETYL-COENZYME A synthetase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 KDGKPGPPG 9
++G P PPG
Sbjct: 468 ENGNPAPPG 476


>sp|FEN_THEAC|FLAP endonuclease 1|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 DGKPGP 7
DGKP P
Sbjct: 80 DGKPSP 85


>sp|FEN_THEVO|FLAP endonuclease 1|Thermoplasma volcanium (strain ATCC 51530

Query: 2 DGKPGP 7
DGKP P
Sbjct: 80 DGKPSP 85


>sp|PUR5_THEGJ|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 KDGKPGPPGQ 10
+ GKPG P +
Sbjct: 32 RRGKPGEPAE 41


>sp|NDK_HYPBU|NUCLEOSIDE diphosphate kinase|Hyperthermus butylicus (strain DSM 5456

Query: 2 DGKPGPPG 9
DG+ PPG
Sbjct: 94 DGRKAPPG 101


>sp|RL24E_CALMQ|LARGE ribosomal subunit protein eL24|Caldivirga maquilingensis (strain

Query: 3 GKPGPPG 9
G+P PPG
Sbjct: 10 GRPIPPG 16


>sp|Y1242_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 4 KPGPPGQ 10
KPGP G+
Sbjct: 362 KPGPMGR 368


>sp|PYRG_METMA|CTP synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 KDGKPGPP 8
+ G+P PP
Sbjct: 509 RPGRPSPP 516


>sp|PYRG_METAC|CTP synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 KDGKPGPP 8
+ G+P PP
Sbjct: 509 RPGRPSPP 516


>sp|DNLI_METMJ|DNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 KDGKPGP 7
+DGKP P
Sbjct: 300 RDGKPMP 306


>sp|PYRG_METBF|CTP synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 KDGKPGPP 8
+ G+P PP
Sbjct: 509 RPGRPSPP 516


>sp|RS3_AERPE|SMALL ribosomal subunit protein uS3|Aeropyrum pernix (strain ATCC 700893

Query: 4 KPGPPG 9
KPG PG
Sbjct: 186 KPGKPG 191


>sp|PYRG_METBU|CTP synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 KDGKPGPP 8
+ G+P PP
Sbjct: 509 RPGRPSPP 516


>sp|RL1_PICTO|LARGE ribosomal subunit protein uL1|Picrophilus torridus (strain ATCC

Query: 4 KPGPPGQ 10
+P PPGQ
Sbjct: 126 RPVPPGQ 132


>sp|TRPD_METB6|ANTHRANILATE phosphoribosyltransferase|Methanoregula boonei (strain DSM 21154

Query: 2 DGKPGP 7
DG PGP
Sbjct: 281 DGAPGP 286




31|SequenceR|160|151|DGQEGKDGKP

>sp|TOP6B_AERPE|TYPE 2 DNA topoisomerase 6|Aeropyrum pernix (strain ATCC 700893

Query: 1 DGQEGKDGKP 10
+G EG+ G+P
Sbjct: 85 EGSEGRGGRP 94


>sp|TDXH2_THEAC|PEROXIREDOXIN 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 GQEGKDGKP 10
GQEG +G P
Sbjct: 167 GQEGIEGAP 175


>sp|TRUD_METAC|PROBABLE tRNA pseudouridine synthase D|Methanosarcina acetivorans (strain

Query: 3 QEGKDGK 9
+EGKDG+
Sbjct: 45 EEGKDGR 51


>sp|TRM56_META3|TRNA (cytidine(56)-2'-O)-methyltransferase|Methanococcus aeolicus

Query: 3 QEGKDGK 9
QEGKD K
Sbjct: 102 QEGKDSK 108


>sp|ILVE_ARCFU|PUTATIVE branched-chain-amino-acid aminotransferase|Archaeoglobus fulgidus

Query: 1 DGQEGKDGKP 10
DG++ DGKP
Sbjct: 257 DGRKIGDGKP 266


>sp|RNP1_THEON|RIBONUCLEASE P protein component 1|Thermococcus onnurineus (strain NA1)

Query: 1 DGQEGKDGKP 10
+G+EGKD P
Sbjct: 4 NGKEGKDRAP 13


>sp|RS19_CENSY|SMALL ribosomal subunit protein uS19|Cenarchaeum symbiosum (strain A)

Query: 1 DGQEGKDGKP 10
D + GK+G P
Sbjct: 52 DARAGKEGNP 61


>sp|MBHLA_PYRFU|MEMBRANE-BOUND hydrogenase subunit alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 2 GQEGKDG 8
GQ+G+DG
Sbjct: 329 GQKGRDG 335


>sp|DHQS_METM7|3-DEHYDROQUINATE synthase|Methanococcus maripaludis (strain C7 /

Query: 5 GKDGKP 10
G+DGKP
Sbjct: 322 GEDGKP 327


>sp|DHQS_METMP|3-DEHYDROQUINATE synthase|Methanococcus maripaludis (strain DSM 14266

Query: 5 GKDGKP 10
G+DGKP
Sbjct: 322 GEDGKP 327


>sp|DHQS_METM6|3-DEHYDROQUINATE synthase|Methanococcus maripaludis (strain C6 /

Query: 5 GKDGKP 10
G+DGKP
Sbjct: 322 GEDGKP 327


>sp|DHQS_METM5|3-DEHYDROQUINATE synthase|Methanococcus maripaludis (strain C5 /

Query: 5 GKDGKP 10
G+DGKP
Sbjct: 322 GEDGKP 327




32|SequenceR|165|156|MRPGQDGQEG

>sp|RS8E_METVS|SMALL ribosomal subunit protein eS8|Methanococcus vannielii (strain ATCC

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_METM5|SMALL ribosomal subunit protein eS8|Methanococcus maripaludis (strain C5

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_METMP|SMALL ribosomal subunit protein eS8|Methanococcus maripaludis (strain DSM

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_METM7|SMALL ribosomal subunit protein eS8|Methanococcus maripaludis (strain C7

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_METM6|SMALL ribosomal subunit protein eS8|Methanococcus maripaludis (strain C6

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|TDXH2_THEAC|PEROXIREDOXIN 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 RPGQDGQEG 10
+PGQ+G EG
Sbjct: 165 QPGQEGIEG 173


>sp|RS8E_IGNH4|SMALL ribosomal subunit protein eS8|Ignicoccus hospitalis (strain KIN4/I

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 115 RPGQDG 120


>sp|RS8E_METAR|SMALL ribosomal subunit protein eS8|Methanocella arvoryzae (strain DSM

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 112 RPGQDG 117


>sp|RS8E_HALSA|SMALL ribosomal subunit protein eS8|Halobacterium salinarum (strain ATCC

Query: 2 RPGQDGQ 8
RPGQDGQ
Sbjct: 110 RPGQDGQ 116


>sp|RS8E_HALS3|SMALL ribosomal subunit protein eS8|Halobacterium salinarum (strain ATCC

Query: 2 RPGQDGQ 8
RPGQDGQ
Sbjct: 110 RPGQDGQ 116


>sp|RS8E_METJA|SMALL ribosomal subunit protein eS8|Methanocaldococcus jannaschii (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 115 RPGQDG 120


>sp|RS8E_METLZ|SMALL ribosomal subunit protein eS8|Methanocorpusculum labreanum (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 112 RPGQDG 117


>sp|RS8E_HYPBU|SMALL ribosomal subunit protein eS8|Hyperthermus butylicus (strain DSM

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 115 RPGQDG 120


>sp|RS8E_THEAC|SMALL ribosomal subunit protein eS8|Thermoplasma acidophilum (strain ATCC

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_METMA|SMALL ribosomal subunit protein eS8|Methanosarcina mazei (strain ATCC

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 112 RPGQDG 117


>sp|RS8E_METBU|SMALL ribosomal subunit protein eS8|Methanococcoides burtonii (strain DSM

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 112 RPGQDG 117


>sp|RS8E_METBF|SMALL ribosomal subunit protein eS8|Methanosarcina barkeri (strain Fusaro

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 112 RPGQDG 117


>sp|RS8E_SACS2|SMALL ribosomal subunit protein eS8|Saccharolobus solfataricus (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|NURA_SACS2|DNA double-strand break repair nuclease|Saccharolobus solfataricus

Query: 2 RPGQDGQE 9
+PG D QE
Sbjct: 99 KPGNDAQE 106


>sp|RS8E_METPE|SMALL ribosomal subunit protein eS8|Methanosphaerula palustris (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 112 RPGQDG 117


>sp|RS8E_SACI7|SMALL ribosomal subunit protein eS8|Saccharolobus islandicus (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_SACI6|SMALL ribosomal subunit protein eS8|Saccharolobus islandicus (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_SACI3|SMALL ribosomal subunit protein eS8|Saccharolobus islandicus (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_SACI2|SMALL ribosomal subunit protein eS8|Saccharolobus islandicus (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_SACI1|SMALL ribosomal subunit protein eS8|Saccharolobus islandicus (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_THEVO|SMALL ribosomal subunit protein eS8|Thermoplasma volcanium (strain ATCC

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_PICTO|SMALL ribosomal subunit protein eS8|Picrophilus torridus (strain ATCC

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 113 RPGQDG 118


>sp|RS8E_SACI4|SMALL ribosomal subunit protein eS8|Saccharolobus islandicus (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_PYRIL|SMALL ribosomal subunit protein eS8|Pyrobaculum islandicum (strain DSM

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 118 RPGQDG 123


>sp|RS8E_METAC|SMALL ribosomal subunit protein eS8|Methanosarcina acetivorans (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 112 RPGQDG 117


>sp|RS8E_STAMF|SMALL ribosomal subunit protein eS8|Staphylothermus marinus (strain ATCC

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_THEGJ|SMALL ribosomal subunit protein eS8|Thermococcus gammatolerans (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 113 RPGQDG 118


>sp|RS8E_PYRFU|SMALL ribosomal subunit protein eS8|Pyrococcus furiosus (strain ATCC

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 113 RPGQDG 118


>sp|RS8E_PYRAB|SMALL ribosomal subunit protein eS8|Pyrococcus abyssi (strain GE5 /

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 113 RPGQDG 118


>sp|RS8E_NANEQ|SMALL ribosomal subunit protein eS8|Nanoarchaeum equitans (strain Kin4-M)

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_PYRHO|SMALL ribosomal subunit protein eS8|Pyrococcus horikoshii (strain ATCC

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 113 RPGQDG 118


>sp|RS8E_METTP|SMALL ribosomal subunit protein eS8|Methanothrix thermoacetophila (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 112 RPGQDG 117


>sp|RS8E_THEKO|SMALL ribosomal subunit protein eS8|Thermococcus kodakarensis (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 113 RPGQDG 118


>sp|RS8E_SULAC|SMALL ribosomal subunit protein eS8|Sulfolobus acidocaldarius (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|IF2G_HALSA|TRANSLATION initiation factor 2 subunit|Halobacterium salinarum (strain ATCC

Query: 1 MRPGQDGQEG 10
+RPG++ +EG
Sbjct: 253 LRPGREVEEG 262


>sp|IF2G_HALS3|TRANSLATION initiation factor 2 subunit|Halobacterium salinarum (strain ATCC

Query: 1 MRPGQDGQEG 10
+RPG++ +EG
Sbjct: 253 LRPGREVEEG 262


>sp|IF2G_HALMA|TRANSLATION initiation factor 2 subunit|Haloarcula marismortui (strain ATCC

Query: 1 MRPGQDGQEG 10
+RPG++ +EG
Sbjct: 252 LRPGREVEEG 261


>sp|RS8E_PYRAE|SMALL ribosomal subunit protein eS8|Pyrobaculum aerophilum (strain ATCC

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 118 RPGQDG 123


>sp|RS8E_SULTO|SMALL ribosomal subunit protein eS8|Sulfurisphaera tokodaii (strain DSM

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 114 RPGQDG 119


>sp|RS8E_PYRNV|SMALL ribosomal subunit protein eS8|Pyrobaculum neutrophilum (strain DSM

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 118 RPGQDG 123


>sp|RS8E_METTH|SMALL ribosomal subunit protein eS8|Methanothermobacter

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 113 RPGQDG 118


>sp|RS8E_METB6|SMALL ribosomal subunit protein eS8|Methanoregula boonei (strain DSM

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 112 RPGQDG 117


>sp|RS8E_METS3|SMALL ribosomal subunit protein eS8|Methanobrevibacter smithii (strain

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 113 RPGQDG 118


>sp|RS8E_PYRCJ|SMALL ribosomal subunit protein eS8|Pyrobaculum calidifontis (strain DSM

Query: 2 RPGQDG 7
RPGQDG
Sbjct: 118 RPGQDG 123


>sp|MES_EURX9|METALLOPTERIN-DEPENDENT ergothioneine synthase|Euryarchaeota archaeon (strain ADurb.Bin009)

Query: 1 MRPGQDG 7
+RPG DG
Sbjct: 232 IRPGTDG 238




33|SequenceR|170|161|IKPFVMRPGQ

>sp|MPGS_PYRHO|MANNOSYL-3-PHOSPHOGLYCERATE synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 KPFVMRP 8
KP VMRP
Sbjct: 363 KPLVMRP 369


>sp|DCDB_METST|DCTP deaminase, dUMP-forming|Methanosphaera stadtmanae (strain ATCC

Query: 2 KPFVMRPGQ 10
KPF++ PG+
Sbjct: 74 KPFIIHPGE 82


>sp|MPGS_PYRAB|MANNOSYL-3-PHOSPHOGLYCERATE synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 KPFVMRP 8
KP VMRP
Sbjct: 363 KPLVMRP 369


>sp|AROB_PYRAE|3-DEHYDROQUINATE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 PFVMRPGQ 10
P V+RPG+
Sbjct: 313 PLVIRPGK 320


>sp|RL10E_THEPD|LARGE ribosomal subunit protein uL16|Thermofilum pendens (strain DSM

Query: 1 IKPFVMRPGQ 10
+K VMRPGQ
Sbjct: 47 LKLVVMRPGQ 56


>sp|CSG1_HALHT|CELL surface glycoprotein 1|Haloarcula hispanica (strain ATCC 33960

Query: 3 PFVMRP 8
PFV+RP
Sbjct: 686 PFVIRP 691


>sp|AROB_PYRNV|3-DEHYDROQUINATE synthase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 PFVMRPGQ 10
P V+RPG+
Sbjct: 313 PLVVRPGR 320


>sp|Y099_SACS2|UPF0173 metal-dependent hydrolase SSO0099|Saccharolobus solfataricus

Query: 3 PFVMRPGQ 10
P V++PGQ
Sbjct: 216 PIVLQPGQ 223


>sp|AROB_PYRIL|3-DEHYDROQUINATE synthase|Pyrobaculum islandicum (strain DSM 4184

Query: 3 PFVMRPGQ 10
P V+RPG+
Sbjct: 313 PLVVRPGR 320


>sp|PAN_AERPE|PROTEASOME-ACTIVATING nucleotidase|Aeropyrum pernix (strain ATCC 700893

Query: 1 IKPFVMRPGQ 10
I P V+RPG+
Sbjct: 291 IDPAVLRPGR 300


>sp|1A1D_PYRHO|PUTATIVE 1-aminocyclopropane-1-carboxylate deaminase|Pyrococcus horikoshii

Query: 2 KPFVMRPG 9
KP+V+ PG
Sbjct: 150 KPYVIPPG 157


>sp|Y2160_PYRAE|UPF0173 metal-dependent hydrolase PAE2160|Pyrobaculum aerophilum (strain

Query: 2 KPFVMRPGQ 10
K FVM+PG
Sbjct: 213 KVFVMKPGD 221


>sp|RTCA_IGNH4|RNA 3'-terminal phosphate cyclase|Ignicoccus hospitalis (strain KIN4/I

Query: 2 KPFVMR 7
KPFVMR
Sbjct: 340 KPFVMR 345


>sp|ARGC_METMA|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 KPFVMRPG 9
KPFV PG
Sbjct: 266 KPFVRLPG 273


>sp|ARGC_METAC|N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE reductase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 KPFVMRPG 9
KPFV PG
Sbjct: 262 KPFVRLPG 269


>sp|GLCDH_THEAC|GLUCOSE 1-dehydrogenase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 IKPFVMRPGQ 10
+ P V RPG+
Sbjct: 89 VVPLVRRPGK 98


>sp|1A1D_PYRAB|PUTATIVE 1-aminocyclopropane-1-carboxylate deaminase|Pyrococcus abyssi

Query: 2 KPFVMRPG 9
KP+++ PG
Sbjct: 150 KPYIIPPG 157


>sp|PLS_PYRFU|PYROLYSIN furiosus (strain ATCC 43587

Query: 1 IKPFVMRPG 9
IKP V+ PG
Sbjct: 561 IKPNVVAPG 569


>sp|APGM_METMJ|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanoculleus marisnigri (strain ATCC

Query: 1 IKPFVMRPG 9
++P +RPG
Sbjct: 174 VQPLTIRPG 182


>sp|DCDB_METTH|DCTP deaminase, dUMP-forming|Methanothermobacter thermautotrophicus

Query: 3 PFVMRPGQ 10
PF++ PG+
Sbjct: 75 PFIIHPGE 82


>sp|Y810_PYRAR|UPF0173 metal-dependent hydrolase Pars_0810|Pyrobaculum arsenaticum (strain

Query: 2 KPFVMRPG 9
K FVM+PG
Sbjct: 213 KVFVMKPG 220


>sp|CDCH_HALSA|PROTEIN CdcH|Halobacterium salinarum (strain ATCC 700922

Query: 3 PFVMRPGQ 10
PF+ PGQ
Sbjct: 139 PFMRSPGQ 146




34|SequenceR|175|166|LFGHNIKPFV

>sp|PRIS_METJA|DNA primase small subunit PriS|Methanocaldococcus jannaschii (strain

Query: 1 LFGHNIK 7
LFGHNIK
Sbjct: 338 LFGHNIK 344


>sp|SYV_METJA|VALINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LFGHNIK 7
LFGH +K
Sbjct: 245 LFGHKVK 251


>sp|EF2_METST|ELONGATION factor 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 HNIKPF 9
HNI PF
Sbjct: 377 HNIAPF 382


>sp|AROK_THEKO|SHIKIMATE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 FGHNIKPF 9
GH I+PF
Sbjct: 219 LGHPIEPF 226


>sp|CAS6_HALMT|CRISPR-ASSOCIATED endoribonuclease Cas6|Haloferax mediterranei (strain ATCC 33500

Query: 4 HNIKPF 9
H IKPF
Sbjct: 152 HTIKPF 157


>sp|CHEB1_METHJ|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase 1|Methanospirillum

Query: 4 HNIKPFV 10
HN+KP V
Sbjct: 250 HNVKPAV 256


>sp|Y130_ARCFU|PROBABLE deacetylase AF_0130|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 GHNIKPFV 10
GH+ KP++
Sbjct: 124 GHHAKPYI 131


>sp|SYL_STAMF|LEUCINE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 4 HNIKP 8
HNIKP
Sbjct: 554 HNIKP 558


>sp|PYRDB_ARCFU|DIHYDROOROTATE dehydrogenase B (NAD(+)), catalytic|Archaeoglobus fulgidus (strain

Query: 1 LFGHNIKPF 9
L+GH+++ F
Sbjct: 97 LYGHSVEEF 105


>sp|SYL_METJA|LEUCINE--TRNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 HNIKP 8
HNIKP
Sbjct: 538 HNIKP 542


>sp|Y7SR_METFE|UNCHARACTERIZED 28.5 kDa protein in|Methanothermus fervidus

Query: 1 LFGHNIKPFV 10
+ HN+KP +
Sbjct: 228 ILSHNLKPIM 237


>sp|Y887_METTH|UPF0104 membrane protein MTH_887|Methanothermobacter thermautotrophicus

Query: 1 LFGHNIKP 8
+FG+NI P
Sbjct: 97 IFGNNITP 104


>sp|DPCKG_HYPBU|GTP-DEPENDENT dephospho-CoA kinase|Hyperthermus butylicus (strain DSM 5456

Query: 1 LFGHNIKPFV 10
L H +KP+V
Sbjct: 55 LIRHGVKPWV 64


>sp|RSAMH_METJA|(R)-S-ADENOSYL-L-METHIONINE hydrolase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 HNIKPF 9
H IKPF
Sbjct: 51 HEIKPF 56


>sp|GLGA_METJA|PROBABLE glycogen synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 HNIKP 8
HNIKP
Sbjct: 250 HNIKP 254




35|SequenceR|180|171|QQDASLFGHN

>sp|SELD_METMP|SELENIDE, water dikinase|Methanococcus maripaludis (strain DSM 14266

Query: 4 ASLFGH 9
ASLFGH
Sbjct: 268 ASLFGH 273


>sp|GLPK_HALMA|GLYCEROL kinase|Haloarcula marismortui (strain ATCC 43049

Query: 3 DASLFGH 9
D SL+GH
Sbjct: 230 DESLYGH 236




36|SequenceR|185|176|RRKILQQDAS

>sp|FTTA_METTH|TRANSCRIPTION termination factor FttA|Methanothermobacter thermautotrophicus

Query: 1 RRKILQQ 7
R+KILQQ
Sbjct: 158 RKKILQQ 164




37|SequenceR|190|181|DGKILRRKIL

>sp|FOLD_METBF|BIFUNCTIONAL protein FolD|Methanosarcina barkeri (strain Fusaro /

Query: 1 DGKILRRKI 9
DGK+L +KI
Sbjct: 12 DGKVLAKKI 20


>sp|ILVC3_SACS2|PUTATIVE ketol-acid reductoisomerase 3|Saccharolobus solfataricus (strain

Query: 3 KILRRKI 9
KILRRK+
Sbjct: 324 KILRRKV 330


>sp|RS27A_NANEQ|SMALL ribosomal subunit protein eS31|Nanoarchaeum equitans (strain

Query: 1 DGKILRRK 8
DGK++R+K
Sbjct: 12 DGKLIRKK 19


>sp|CPGS_THEKO|CYCLIC 2,3-diphosphoglycerate synthetase|Thermococcus kodakarensis (strain

Query: 1 DGKILRRKIL 10
DGK LR+ +L
Sbjct: 412 DGKDLRKSVL 421


>sp|CPGS_THEON|CYCLIC 2,3-diphosphoglycerate synthetase|Thermococcus onnurineus (strain

Query: 1 DGKILRRKIL 10
DGK LR+ +L
Sbjct: 412 DGKDLRKAVL 421




38|SequenceR|195|186|GAQGQDGKIL

>sp|PYRG_PYRHO|CTP synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GAQGQDGKIL 10
GA+G +GKI+
Sbjct: 353 GARGAEGKIM 362


>sp|PYRG_CALMQ|CTP synthase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 GAQGQDGKIL 10
GA+G +GKI+
Sbjct: 354 GARGVEGKIM 363


>sp|PYRG_PYRAB|CTP synthase|Pyrococcus abyssi (strain GE5 /

Query: 1 GAQGQDGKIL 10
GA+G +GKI+
Sbjct: 353 GARGAEGKIM 362


>sp|FLAK_METVO|PREFLAGELLIN peptidase|Methanococcus voltae

Query: 1 GAQGQDGKIL 10
G G DGKIL
Sbjct: 74 GIGGADGKIL 83


>sp|RL1_PYRAR|LARGE ribosomal subunit protein uL1|Pyrobaculum arsenaticum (strain DSM

Query: 1 GAQGQDGK 8
GA+GQD K
Sbjct: 169 GAEGQDQK 176


>sp|HFLX_THEPD|GTPASE HflX|Thermofilum pendens (strain DSM 2475

Query: 3 QGQDGKIL 10
QG DGK+L
Sbjct: 393 QGSDGKLL 400


>sp|PYRG_HALHT|CTP synthase|Haloarcula hispanica (strain ATCC 33960

Query: 1 GAQGQDGKI 9
GA+G +GKI
Sbjct: 366 GARGTEGKI 374


>sp|PYRG_PYRFU|CTP synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GAQGQDGKI 9
GA+G +GKI
Sbjct: 353 GARGAEGKI 361


>sp|PYRG_ARCFU|CTP synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GAQGQDGKI 9
GA+G +GKI
Sbjct: 351 GARGAEGKI 359


>sp|PYRG_THEGJ|CTP synthase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 GAQGQDGKIL 10
GA+G +GK++
Sbjct: 353 GARGSEGKMM 362


>sp|PYRG_HALMA|CTP synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 GAQGQDGKI 9
GA+G +GKI
Sbjct: 366 GARGTEGKI 374


>sp|PYRG_SULAC|CTP synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 GAQGQDGKI 9
GA+G +GKI
Sbjct: 356 GARGVEGKI 364


>sp|PYRG_THEKO|CTP synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 GAQGQDGKIL 10
GA+G +GK++
Sbjct: 353 GARGTEGKMM 362


>sp|PYRG_THEON|CTP synthase|Thermococcus onnurineus (strain NA1)

Query: 1 GAQGQDGKIL 10
GA+G +GK++
Sbjct: 353 GARGTEGKMM 362


>sp|TYW32_PYRAB|TRNA(PHE) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-

Query: 4 GQDGKIL 10
G+DGK+L
Sbjct: 146 GRDGKVL 152


>sp|RL15E_METB6|LARGE ribosomal subunit protein eL15|Methanoregula boonei (strain DSM

Query: 4 GQDGKI 9
GQDGK+
Sbjct: 122 GQDGKL 127


>sp|ALBA_METMP|DNA/RNA-BINDING protein Alba|Methanococcus maripaludis (strain DSM 14266

Query: 3 QGQDGK 8
QG+DGK
Sbjct: 71 QGEDGK 76


>sp|GLNK1_METMA|NITROGEN regulatory protein GlnK1|Methanosarcina mazei (strain ATCC

Query: 1 GAQGQDGKI 9
GA+G DG +
Sbjct: 83 GAKGSDGYV 91


>sp|NNR_METJA|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Methanocaldococcus jannaschii

Query: 3 QGQDGKIL 10
+GQ+GK+L
Sbjct: 249 KGQNGKVL 256




39|SequenceR|200|191|PPGPPGAQGQ

>sp|MTD_METB6|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanoregula

Query: 2 PGPPGAQGQ 10
PGP GA+ Q
Sbjct: 73 PGPTGAREQ 81


>sp|Y1209_PYRHO|UNCHARACTERIZED protein PH1209|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 PGPPGAQGQ 10
PG PG +G+
Sbjct: 18 PGSPGYKGE 26


>sp|GADH_PICTO|D-GLYCERALDEHYDE dehydrogenase (NADP(+))|Picrophilus torridus (strain ATCC 700027

Query: 2 PGPPGAQG 9
PGP +QG
Sbjct: 436 PGPEASQG 443


>sp|Y249_PYRAB|PUTATIVE GTPase PYRAB02490|Pyrococcus abyssi (strain GE5 /

Query: 3 GPPGA 7
GPPGA
Sbjct: 52 GPPGA 56


>sp|KAD6_THEVO|PUTATIVE adenylate kinase|Thermoplasma volcanium (strain ATCC 51530

Query: 3 GPPGA 7
GPPGA
Sbjct: 9 GPPGA 13


>sp|Y759_ARCFU|UNCHARACTERIZED protein AF_0759|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 PPGAQG 9
PPG QG
Sbjct: 99 PPGLQG 104


>sp|Y274_PYRHO|PUTATIVE GTPase PH0274|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 GPPGA 7
GPPGA
Sbjct: 54 GPPGA 58


>sp|KCY_HALWD|CYTIDYLATE kinase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 GPPGA 7
GPPGA
Sbjct: 7 GPPGA 11


>sp|Y1062_PYRAB|UNCHARACTERIZED protein PYRAB10620|Pyrococcus abyssi (strain GE5 /

Query: 2 PGPPGAQG 9
PG PG +G
Sbjct: 18 PGSPGYRG 25


>sp|GADH_THEAC|D-GLYCERALDEHYDE dehydrogenase (NADP(+))|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 PGPPGAQG 9
PGP +QG
Sbjct: 438 PGPEASQG 445


>sp|ACSA_PYRAE|ACETYL-COENZYME A synthetase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 PGPPGAQG 9
P PPG +G
Sbjct: 472 PAPPGVKG 479


>sp|ACYP_PYRAR|ACYLPHOSPHATASE arsenaticum (strain DSM 13514

Query: 3 GPPGAQ 8
GPPGA+
Sbjct: 66 GPPGAR 71


>sp|ACYP_PYRAE|ACYLPHOSPHATASE aerophilum (strain ATCC 51768

Query: 3 GPPGAQ 8
GPPGA+
Sbjct: 66 GPPGAR 71


>sp|ACYP_PYRCJ|ACYLPHOSPHATASE calidifontis (strain DSM 21063

Query: 3 GPPGAQ 8
GPPGA+
Sbjct: 81 GPPGAR 86


>sp|KAD_HALMA|ADENYLATE kinase|Haloarcula marismortui (strain ATCC 43049

Query: 3 GPPGA 7
GPPGA
Sbjct: 10 GPPGA 14


>sp|Y1659_ARCFU|UNCHARACTERIZED protein AF_1659|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PGPPGAQGQ 10
PG PG G+
Sbjct: 61 PGEPGEDGK 69


>sp|RNZ_HALVD|RIBONUCLEASE Z|Haloferax volcanii (strain ATCC 29605

Query: 3 GPPGAQGQ 10
GPPG++G
Sbjct: 90 GPPGSKGH 97


>sp|RIBL_METMJ|FAD synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 PPGPPGAQGQ 10
PP P G+ G+
Sbjct: 139 PPDPTGSHGE 148


>sp|MTD_METHJ|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanospirillum

Query: 2 PGPPGAQ 8
PGP GA+
Sbjct: 73 PGPKGAR 79


>sp|TRMY_THEON|TRNA (pseudouridine(54)-N(1))-methyltransferase|Thermococcus

Query: 1 PPGPPGA 7
PP PP A
Sbjct: 59 PPNPPKA 65


>sp|NTPTH_IGNH4|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 GPPGA 7
GPPGA
Sbjct: 8 GPPGA 12




40|SequenceR|205|196|PGPPGPPGPP

>sp|TRMY_METM5|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanococcus

Query: 2 GPPGPP 7
GPP PP
Sbjct: 58 GPPNPP 63


Query: 5 GPPGPP 10
GPP PP
Sbjct: 58 GPPNPP 63


>sp|DNAK_HALMA|CHAPERONE protein DnaK|Haloarcula marismortui (strain ATCC 43049

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 436 PPAPAGTP 443


>sp|DNAK_NATPD|CHAPERONE protein DnaK|Natronomonas pharaonis (strain ATCC 35678

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 437 PPAPAGTP 444


>sp|DNAK_HALLT|CHAPERONE protein DnaK|Halorubrum lacusprofundi (strain ATCC 49239

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 437 PPAPAGTP 444


>sp|DNAK_HALWD|CHAPERONE protein DnaK|Haloquadratum walsbyi (strain DSM 16790

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 437 PPAPAGTP 444


>sp|DNAK_HALSA|CHAPERONE protein DnaK|Halobacterium salinarum (strain ATCC 700922

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 436 PPAPAGTP 443


>sp|DNAK_HALS3|CHAPERONE protein DnaK|Halobacterium salinarum (strain ATCC 29341

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 436 PPAPAGTP 443


>sp|DNAK_HALMT|CHAPERONE protein DnaK|Haloferax mediterranei (strain ATCC 33500

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 437 PPAPAGTP 444


>sp|MUTS_HALWD|DNA mismatch repair protein MutS|Haloquadratum walsbyi (strain DSM

Query: 1 PGPPGPP 7
P P GPP
Sbjct: 17 PQPEGPP 23


Query: 4 PGPPGPP 10
P P GPP
Sbjct: 17 PQPEGPP 23


>sp|SYE_ARCFU|GLUTAMATE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PGPPGPP 7
P P GPP
Sbjct: 100 PNPNGPP 106


Query: 4 PGPPGPP 10
P P GPP
Sbjct: 100 PNPNGPP 106


>sp|PYRG_METMA|CTP synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PGPPGPP 7
PG P PP
Sbjct: 510 PGRPSPP 516


Query: 4 PGPPGPP 10
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|SYI_SULTO|ISOLEUCINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GPPGPPGP 9
GPP P P
Sbjct: 43 GPPYPSSP 50


>sp|SYI_SULAC|ISOLEUCINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 GPPGPPGP 9
GPP P P
Sbjct: 43 GPPYPSSP 50


>sp|SYI_SACI4|ISOLEUCINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 GPPGPPGP 9
GPP P P
Sbjct: 46 GPPYPSSP 53


>sp|SYI_SACI3|ISOLEUCINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 2 GPPGPPGP 9
GPP P P
Sbjct: 46 GPPYPSSP 53


>sp|DNAJ_HALSA|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 700922

Query: 2 GPPGPPGPP 10
G PG PG P
Sbjct: 257 GAPGEPGAP 265


>sp|DNAJ_HALS3|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 29341

Query: 2 GPPGPPGPP 10
G PG PG P
Sbjct: 257 GAPGEPGAP 265


>sp|PYRG_METAC|CTP synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PGPPGPP 7
PG P PP
Sbjct: 510 PGRPSPP 516


Query: 4 PGPPGPP 10
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|RS3A_AERPE|SMALL ribosomal subunit protein eS1|Aeropyrum pernix (strain ATCC 700893

Query: 1 PGPPGP 6
PGP GP
Sbjct: 195 PGPNGP 200


Query: 4 PGPPGP 9
PGP GP
Sbjct: 195 PGPNGP 200


>sp|PYRG_METBU|CTP synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PGPPGPP 7
PG P PP
Sbjct: 510 PGRPSPP 516


Query: 4 PGPPGPP 10
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|PYRG_METBF|CTP synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 PGPPGPP 7
PG P PP
Sbjct: 510 PGRPSPP 516


Query: 4 PGPPGPP 10
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|TRMY_PYRHO|TRNA (pseudouridine(54)-N(1))-methyltransferase|Pyrococcus horikoshii

Query: 2 GPPGPP 7
GPP PP
Sbjct: 58 GPPSPP 63


Query: 5 GPPGPP 10
GPP PP
Sbjct: 58 GPPSPP 63


>sp|HAH4_HALMT|HALOCIN-H4 mediterranei (strain ATCC 33500

Query: 2 GPPGPPGPP 10
PPGP G P
Sbjct: 49 APPGPNGDP 57


>sp|ILVD_ARCFU|DIHYDROXY-ACID dehydratase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GPPGPPGPP 10
GP G PG P
Sbjct: 430 GPKGAPGMP 438


>sp|Y520_METJA|PUTATIVE NADH-ubiquinone oxidoreductase MJ0520|Methanocaldococcus

Query: 2 GPPGPP 7
G PGPP
Sbjct: 38 GRPGPP 43


Query: 5 GPPGPP 10
G PGPP
Sbjct: 38 GRPGPP 43


>sp|DNAK_PICTO|CHAPERONE protein DnaK|Picrophilus torridus (strain ATCC 700027

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 439 PPAPRGVP 446


>sp|SYM_PYRAR|METHIONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 PPGPPGP 9
PPG P P
Sbjct: 410 PPGKPSP 416


>sp|PYRG_METKA|CTP synthase|Methanopyrus kandleri (strain AV19 /

Query: 1 PGPPGPP 7
PG P PP
Sbjct: 515 PGDPSPP 521


Query: 4 PGPPGPP 10
PG P PP
Sbjct: 515 PGDPSPP 521


>sp|MUTL_METMJ|DNA mismatch repair protein MutL|Methanoculleus marisnigri (strain ATCC

Query: 1 PGPPGPPGPP 10
P P G PG P
Sbjct: 359 PSPVGEPGAP 368


>sp|CBID_PYRAE|COBALT-PRECORRIN-5B C(1)-methyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PGPPGPPG 8
PG P PPG
Sbjct: 103 PGLPVPPG 110


>sp|TRMY_PYRAB|TRNA (pseudouridine(54)-N(1))-methyltransferase|Pyrococcus abyssi

Query: 2 GPPGPP 7
GPP PP
Sbjct: 58 GPPDPP 63


Query: 5 GPPGPP 10
GPP PP
Sbjct: 58 GPPDPP 63


>sp|PYRG_METTP|CTP synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 PGPPGPP 7
PG P PP
Sbjct: 514 PGRPSPP 520


Query: 4 PGPPGPP 10
PG P PP
Sbjct: 514 PGRPSPP 520


>sp|SYE_METBU|GLUTAMATE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PGPPGPP 7
P P GPP
Sbjct: 110 PNPNGPP 116


Query: 4 PGPPGPP 10
P P GPP
Sbjct: 110 PNPNGPP 116


>sp|RFCL_METAC|REPLICATION factor C large subunit|Methanosarcina acetivorans (strain ATCC

Query: 2 GPPGPPGP 9
G PPGP
Sbjct: 479 GKSDPPGP 486


>sp|DNAK_METTH|CHAPERONE protein DnaK|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 442 PPAPRGVP 449


>sp|DNAK_METTE|CHAPERONE protein DnaK|Methanosarcina thermophila

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 437 PPAPRGVP 444


>sp|DP2L_NATPD|DNA polymerase II large subunit|Natronomonas pharaonis (strain ATCC

Query: 2 GPPGPPGP 9
P GPP P
Sbjct: 320 APSGPPRP 327


>sp|PRIS_AERPE|DNA primase small subunit PriS|Aeropyrum pernix (strain ATCC 700893

Query: 1 PGPPGPPGP 9
P PP P P
Sbjct: 192 PAPPSPDDP 200


>sp|DNAK_NITMS|CHAPERONE protein DnaK|Nitrosopumilus maritimus (strain SCM1)

Query: 3 PPGPPGPP 10
PP P G P
Sbjct: 441 PPAPRGVP 448


>sp|SYE_METTP|GLUTAMATE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 PGPPGPP 7
P P GPP
Sbjct: 107 PNPNGPP 113


Query: 4 PGPPGPP 10
P P GPP
Sbjct: 107 PNPNGPP 113


>sp|ILVD_SACI6|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 GPPGPPGPP 10
GP G PG P
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI4|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 GPPGPPGPP 10
GP G PG P
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI3|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 2 GPPGPPGPP 10
GP G PG P
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACS2|DIHYDROXY-ACID dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GPPGPPGPP 10
GP G PG P
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI7|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 GPPGPPGPP 10
GP G PG P
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI2|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 GPPGPPGPP 10
GP G PG P
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI1|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 GPPGPPGPP 10
GP G PG P
Sbjct: 438 GPKGAPGMP 446


>sp|TRMY_THEON|TRNA (pseudouridine(54)-N(1))-methyltransferase|Thermococcus

Query: 2 GPPGPP 7
GPP PP
Sbjct: 58 GPPNPP 63


Query: 5 GPPGPP 10
GPP PP
Sbjct: 58 GPPNPP 63




41|SequenceR|210|201|GPPGRPGPPG

>sp|PYRG_METMA|CTP synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 PGRPGPP 9
PGRP PP
Sbjct: 510 PGRPSPP 516


>sp|PYRG_METAC|CTP synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 PGRPGPP 9
PGRP PP
Sbjct: 510 PGRPSPP 516


>sp|PYRG_METBU|CTP synthase|Methanococcoides burtonii (strain DSM 6242

Query: 3 PGRPGPP 9
PGRP PP
Sbjct: 510 PGRPSPP 516


>sp|Y520_METJA|PUTATIVE NADH-ubiquinone oxidoreductase MJ0520|Methanocaldococcus

Query: 4 GRPGPP 9
GRPGPP
Sbjct: 38 GRPGPP 43


>sp|PYRG_METBF|CTP synthase|Methanosarcina barkeri (strain Fusaro /

Query: 3 PGRPGPP 9
PGRP PP
Sbjct: 510 PGRPSPP 516


>sp|SYM_PYRAR|METHIONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 PPGRPGP 8
PPG+P P
Sbjct: 410 PPGKPSP 416


>sp|SYC_THEPD|CYSTEINE--TRNA ligase|Thermofilum pendens (strain DSM 2475

Query: 3 PGRPG 7
PGRPG
Sbjct: 197 PGRPG 201


>sp|SYC_THEAC|CYSTEINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 PGRPG 7
PGRPG
Sbjct: 198 PGRPG 202


>sp|AGLB_METJA|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GPPGRPGP 8
PPG P P
Sbjct: 111 APPGHPLP 118


>sp|Y781_METJA|UNCHARACTERIZED protein MJ0781|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PGRPGPP 9
P RPG P
Sbjct: 354 PARPGMP 360


>sp|DNAJ_HALSA|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 700922

Query: 1 GPPGRPGPP 9
G PG PG P
Sbjct: 257 GAPGEPGAP 265


>sp|DNAJ_HALS3|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 29341

Query: 1 GPPGRPGPP 9
G PG PG P
Sbjct: 257 GAPGEPGAP 265


>sp|PYRG_METB6|CTP synthase|Methanoregula boonei (strain DSM 21154

Query: 3 PGRPGPP 9
P RP PP
Sbjct: 505 PTRPSPP 511


>sp|DAPAL_PYRAE|UNCHARACTERIZED DapA-like lyase PAE2915|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GPPGRPGPP 9
GPP P PP
Sbjct: 274 GPPREPLPP 282


>sp|CARA_METJA|CARBAMOYL phosphate synthase small chain|Methanocaldococcus jannaschii

Query: 2 PPGRPGP 8
P RPGP
Sbjct: 331 PEARPGP 337


>sp|DAPAL_PYRAR|UNCHARACTERIZED DapA-like lyase Pars_0992|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 GPPGRPGPP 9
GPP P PP
Sbjct: 274 GPPREPLPP 282


>sp|PURP_METTH|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanothermobacter thermautotrophicus

Query: 2 PPGRPGP 8
PPG GP
Sbjct: 289 PPGMNGP 295


>sp|PYRG_NATPD|CTP synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 PGRPGPP 9
PGR PP
Sbjct: 521 PGRASPP 527


>sp|RRP42_METKA|EXOSOME complex component Rrp42|Methanopyrus kandleri (strain AV19 /

Query: 2 PPGRPGPP 9
P PGPP
Sbjct: 91 PSFEPGPP 98


>sp|ILVD_ARCFU|DIHYDROXY-ACID dehydratase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GPPGRPGPP 9
GP G PG P
Sbjct: 430 GPKGAPGMP 438


>sp|RRP42_METAC|EXOSOME complex component Rrp42|Methanosarcina acetivorans (strain ATCC

Query: 2 PPGRPGPP 9
P PGPP
Sbjct: 93 PEFEPGPP 100


>sp|TRMY_THEKO|TRNA (pseudouridine(54)-N(1))-methyltransferase|Thermococcus

Query: 4 GRPGPP 9
GRP PP
Sbjct: 58 GRPNPP 63


>sp|SYP_CALMQ|PROLINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 1 GPPGRP 6
GP GRP
Sbjct: 4 GPQGRP 9


>sp|PYRG_ARCFU|CTP synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PGRPGPP 9
P RP PP
Sbjct: 509 PYRPSPP 515


>sp|PAND_PYRIL|ASPARTATE 1-decarboxylase|Pyrobaculum islandicum (strain DSM 4184

Query: 3 PGRPG 7
PGRPG
Sbjct: 60 PGRPG 64


>sp|Y811_METTH|UPF0305 protein MTH_811|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 PPGRPGPPG 10
PPG P P G
Sbjct: 110 PPGTPFPGG 118


>sp|PYRG_METKA|CTP synthase|Methanopyrus kandleri (strain AV19 /

Query: 3 PGRPGPP 9
PG P PP
Sbjct: 515 PGDPSPP 521


>sp|RRP42_METMA|EXOSOME complex component Rrp42|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 PPGRPGPP 9
P PGPP
Sbjct: 93 PEFEPGPP 100


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 GPPGRPG 7
GP G PG
Sbjct: 440 GPEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 GPPGRPG 7
GP G PG
Sbjct: 440 GPEGHPG 446


>sp|RRP42_PYRFU|EXOSOME complex component Rrp42|Pyrococcus furiosus (strain ATCC 43587

Query: 2 PPGRPGPP 9
P PGPP
Sbjct: 92 PTFEPGPP 99


>sp|PYRG_METTP|CTP synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 PGRPGPP 9
PGRP PP
Sbjct: 514 PGRPSPP 520


>sp|DCDA_THEAC|DIAMINOPIMELATE decarboxylase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 GRPGPP 9
GRP PP
Sbjct: 370 GRPRPP 375


>sp|RRP42_THEON|EXOSOME complex component Rrp42|Thermococcus onnurineus (strain NA1)

Query: 2 PPGRPGPP 9
P PGPP
Sbjct: 92 PSFEPGPP 99


>sp|FTR_METBF|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 2 PPGRPG 7
P GRPG
Sbjct: 66 PDGRPG 71


>sp|RRP42_ARCFU|EXOSOME complex component Rrp42|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PPGRPGPP 9
P PGPP
Sbjct: 91 PTFEPGPP 98


>sp|RRP42_THEGJ|EXOSOME complex component Rrp42|Thermococcus gammatolerans (strain DSM

Query: 2 PPGRPGPP 9
P PGPP
Sbjct: 92 PTFEPGPP 99


>sp|FTR_METAC|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 PPGRPG 7
P GRPG
Sbjct: 66 PDGRPG 71


>sp|ILVB_METAO|PROBABLE acetolactate synthase large subunit|Methanococcus aeolicus

Query: 4 GRPGP 8
GRPGP
Sbjct: 148 GRPGP 152




42|SequenceR|215|206|DKGTDGPPGR

>sp|HTR13_HALS3|TRANSDUCER protein Htr13|Halobacterium salinarum (strain ATCC 29341

Query: 1 DKGTDGPPGR 10
D TDGPP +
Sbjct: 103 DGPTDGPPAQ 112


>sp|Y578_METJA|UNCHARACTERIZED protein MJ0578|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 DGPPG 9
DGPPG
Sbjct: 169 DGPPG 173


>sp|METXA_HALSA|HOMOSERINE O-acetyltransferase|Halobacterium salinarum (strain ATCC 700922

Query: 2 KGTDGPPG 9
GTDGPP
Sbjct: 87 HGTDGPPA 94


>sp|RL31_METHJ|LARGE ribosomal subunit protein eL31|Methanospirillum hungatei JF-1

Query: 2 KGTDGPPGR 10
+GT+ PP R
Sbjct: 59 RGTEKPPAR 67


>sp|Y933_METJA|UNCHARACTERIZED membrane protein MJ0933|Methanocaldococcus jannaschii (strain ATCC

Query: 1 DKGTDG 6
+KGTDG
Sbjct: 151 EKGTDG 156


>sp|SYT_CENSY|THREONINE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 2 KGTDGPP 8
+GTD PP
Sbjct: 189 RGTDEPP 195


>sp|RNP4_AERPE|RIBONUCLEASE P protein component 4|Aeropyrum pernix (strain ATCC 700893

Query: 1 DKGTDGPP 8
DKG GPP
Sbjct: 136 DKGPQGPP 143


>sp|DHQS_METJA|3-DEHYDROQUINATE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 DKGTDG 6
+KGTDG
Sbjct: 151 EKGTDG 156


>sp|Y3591_METAC|PROTEIN MA_3591|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 DKGTDGPP 8
D GTD PP
Sbjct: 32 DAGTDLPP 39




43|SequenceR|220|211|MGRPGDKGTD

>sp|TDXH2_PICTO|PEROXIREDOXIN 2|Picrophilus torridus (strain ATCC 700027

Query: 3 RPGDKG 8
RPGDKG
Sbjct: 169 RPGDKG 174


>sp|GCSPB_SACS2|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 MGRPGDKGTD 10
+ RPGD G D
Sbjct: 260 IARPGDMGFD 269


>sp|GCSPB_SACI7|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 MGRPGDKGTD 10
+ RPGD G D
Sbjct: 261 IARPGDMGFD 270


>sp|GCSPB_SACI6|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 MGRPGDKGTD 10
+ RPGD G D
Sbjct: 261 IARPGDMGFD 270


>sp|GCSPB_SACI4|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 MGRPGDKGTD 10
+ RPGD G D
Sbjct: 261 IARPGDMGFD 270


>sp|GCSPB_SACI3|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 MGRPGDKGTD 10
+ RPGD G D
Sbjct: 261 IARPGDMGFD 270


>sp|GCSPB_SACI2|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 MGRPGDKGTD 10
+ RPGD G D
Sbjct: 261 IARPGDMGFD 270


>sp|GCSPB_SACI1|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Saccharolobus

Query: 1 MGRPGDKGTD 10
+ RPGD G D
Sbjct: 261 IARPGDMGFD 270


>sp|PGK_SACS2|PHOSPHOGLYCERATE kinase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GRPGDK 7
GRPGDK
Sbjct: 65 GRPGDK 70


>sp|ALAXL_PYRHO|ALANYL-TRNA editing protein AlaX-L|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GRPGDKG 8
G+PGD+G
Sbjct: 44 GQPGDRG 50


>sp|GCSPB_SULTO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Sulfurisphaera

Query: 3 RPGDKGTD 10
RPGD G D
Sbjct: 259 RPGDMGFD 266


>sp|PGK1_METAC|PHOSPHOGLYCERATE kinase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 GRPGDK 7
GRPGDK
Sbjct: 67 GRPGDK 72


>sp|GCSPB_PYRHO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Pyrococcus

Query: 3 RPGDKGTD 10
RPGD G D
Sbjct: 258 RPGDMGFD 265


>sp|GCSPB_THEKO|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermococcus

Query: 3 RPGDKGTD 10
RPGD G D
Sbjct: 258 RPGDMGFD 265


>sp|GCSPB_STAMF|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Staphylothermus

Query: 3 RPGDKGTD 10
RPGD G D
Sbjct: 264 RPGDMGFD 271


>sp|GCSPB_PYRFU|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Pyrococcus furiosus

Query: 3 RPGDKGTD 10
RPGD G D
Sbjct: 258 RPGDMGFD 265


>sp|GCSPB_PYRAB|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Pyrococcus abyssi

Query: 3 RPGDKGTD 10
RPGD G D
Sbjct: 258 RPGDMGFD 265


>sp|RNH2_SULAC|RIBONUCLEASE HII|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 GRPGDKGT 9
G PGDK T
Sbjct: 164 GYPGDKKT 171


>sp|GCSPB_THEON|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermococcus

Query: 3 RPGDKGTD 10
RPGD G D
Sbjct: 258 RPGDMGFD 265


>sp|GCSPB_THEGJ|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Thermococcus

Query: 3 RPGDKGTD 10
RPGD G D
Sbjct: 258 RPGDMGFD 265


>sp|GLYA_PYRHO|SERINE hydroxymethyltransferase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 MGRPGDK 7
+G+PGDK
Sbjct: 104 LGQPGDK 110


>sp|LADH_METMP|LACTALDEHYDE dehydrogenase|Methanococcus maripaludis (strain DSM 14266

Query: 1 MGRPGDKGTD 10
+G P DK TD
Sbjct: 303 LGNPLDKNTD 312


>sp|GLYA_PYRFU|SERINE hydroxymethyltransferase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 MGRPGDK 7
+G+PGDK
Sbjct: 104 LGQPGDK 110


>sp|GLYA_PYRAB|SERINE hydroxymethyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 1 MGRPGDK 7
+G+PGDK
Sbjct: 104 LGQPGDK 110


>sp|GFCR_METMA|TRANSCRIPTIONAL regulator GfcR|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 MGRPGDKGT 9
M +PG KGT
Sbjct: 126 MVQPGQKGT 134


>sp|SPSS_METAC|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 MGRPGD 6
MG+PGD
Sbjct: 100 MGKPGD 105


>sp|PGK_SULAC|PHOSPHOGLYCERATE kinase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 GRPGD 6
GRPGD
Sbjct: 69 GRPGD 73


>sp|Y3407_METJA|UNCHARACTERIZED protein MJECS07|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MGRPGDKGTD 10
+G+ GD G D
Sbjct: 197 VGKEGDTGID 206


>sp|SPSS_METMA|O-PHOSPHO-L-SERYL-TRNA:CYS-TRNA synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 MGRPGD 6
MG+PGD
Sbjct: 100 MGKPGD 105


>sp|PCKG_SULTO|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 MGRPGDKGT 9
+G GDKGT
Sbjct: 243 IGFEGDKGT 251


>sp|RGYR1_AERPE|REVERSE gyrase 1|Aeropyrum pernix (strain ATCC 700893

Query: 1 MGRPGD 6
+GRPGD
Sbjct: 1150 IGRPGD 1155


>sp|GFCR1_METAC|TRANSCRIPTIONAL regulator GfcR 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 RPGDKGT 9
+PG KGT
Sbjct: 128 QPGQKGT 134


>sp|SYA_METBU|ALANINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 2 GRPGDKGT 9
G+P D GT
Sbjct: 549 GQPADHGT 556


>sp|PGK_SULTO|PHOSPHOGLYCERATE kinase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GRPGD 6
GRPGD
Sbjct: 69 GRPGD 73


>sp|SYA_METMJ|ALANINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 GRPGDKGT 9
G+P D GT
Sbjct: 551 GQPSDTGT 558


>sp|FAU1_AERPE|PROBABLE ribonuclease FAU-1|Aeropyrum pernix (strain ATCC 700893

Query: 3 RPGDKG 8
RPGD+G
Sbjct: 368 RPGDRG 373


>sp|SYA_HALMA|ALANINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 2 GRPGDKGT 9
G+P DKGT
Sbjct: 561 GQPPDKGT 568


>sp|PGK_METS5|PHOSPHOGLYCERATE kinase|Metallosphaera sedula (strain ATCC 51363

Query: 2 GRPGD 6
GRPGD
Sbjct: 63 GRPGD 67


>sp|ALAXM_PYRHO|ALANYL-TRNA editing protein AlaX-M|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GRPGDKGT 9
G+P D+GT
Sbjct: 43 GQPHDRGT 50


>sp|COFE_METMP|COENZYME F420:L-glutamate ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 MGRPGDKGT 9
MGRP KG+
Sbjct: 157 MGRPFRKGS 165


>sp|GFCR1_METBF|TRANSCRIPTIONAL regulator GfcR 1|Methanosarcina barkeri (strain Fusaro /

Query: 3 RPGDKGT 9
+PG KGT
Sbjct: 128 QPGQKGT 134


>sp|COFE_METM6|COENZYME F420:L-glutamate ligase|Methanococcus maripaludis (strain C6 /

Query: 1 MGRPGDKGT 9
MGRP KG+
Sbjct: 157 MGRPFRKGS 165


>sp|URE1_HALWD|UREASE subunit alpha|Haloquadratum walsbyi (strain DSM 16790

Query: 4 PGDKGTD 10
P D+GTD
Sbjct: 391 PADRGTD 397


>sp|CAPPA_THEPD|PHOSPHOENOLPYRUVATE carboxylase|Thermofilum pendens (strain DSM 2475

Query: 2 GRPGDKG 8
G PGD G
Sbjct: 288 GEPGDAG 294


>sp|GCSPB_HALSA|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Halobacterium

Query: 2 GRPGDKGTD 10
RPGD G D
Sbjct: 254 ARPGDMGFD 262


>sp|HMGCS_THEKO|HYDROXYMETHYLGLUTARYL-COA synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 GRPGD 6
GRPGD
Sbjct: 147 GRPGD 151


>sp|DNLI_HALSA|DNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 4 PGDKGTD 10
PGD+G D
Sbjct: 418 PGDRGKD 424


>sp|DNLI_HALS3|DNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 4 PGDKGTD 10
PGD+G D
Sbjct: 418 PGDRGKD 424


>sp|SYA_METBF|ALANINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 GRPGDKGT 9
G+P D GT
Sbjct: 549 GQPADMGT 556




44|SequenceR|225|216|GPVGPMGRPG

>sp|ACDA1_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 GPVGPMGRPG 10
GP+GP PG
Sbjct: 40 GPMGPSAWPG 49


>sp|PXPA_PYRHO|5-OXOPROLINASE subunit A|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GPVGPMGRPG 10
G + P GRPG
Sbjct: 174 GTLVPRGRPG 183


>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 1 GPVGPMG 7
GP+GP G
Sbjct: 217 GPMGPTG 223


>sp|SYP_CALMQ|PROLINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 4 GPMGRP 9
GP GRP
Sbjct: 4 GPQGRP 9


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 1 GPVGPM 6
GP+GPM
Sbjct: 441 GPMGPM 446


>sp|MUTS2_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 1 GPVGPMGRP 9
G VGP G P
Sbjct: 256 GAVGPDGEP 264


>sp|SUDHB_PYRFU|SULFIDE dehydrogenase subunit beta|Pyrococcus furiosus (strain ATCC 43587

Query: 3 VGPMGRP 9
+GP+G+P
Sbjct: 86 LGPLGKP 92


>sp|Y378_NANEQ|UPF0173 metal-dependent hydrolase NEQ378|Nanoarchaeum equitans (strain

Query: 1 GPVGPMGRPG 10
G P+G PG
Sbjct: 105 GKAYPLGNPG 114


>sp|TRPD_PYRAE|ANTHRANILATE phosphoribosyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 VGPMGRPG 10
VGP+ PG
Sbjct: 178 VGPLANPG 185


>sp|BRIX_AERPE|PROBABLE Brix domain-containing ribosomal biogenesis|Aeropyrum pernix

Query: 1 GPVGPMGRPG 10
PVGPM R G
Sbjct: 159 APVGPMLRLG 168


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 4 GPMGRPG 10
GP G PG
Sbjct: 440 GPEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 4 GPMGRPG 10
GP G PG
Sbjct: 440 GPEGHPG 446


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 GPVGPMGRPG 10
GP+GP G
Sbjct: 40 GPMGPTAMAG 49


>sp|PDXT_PYRAR|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Pyrobaculum arsenaticum (strain

Query: 3 VGPMGRP 9
VGP G+P
Sbjct: 99 VGPTGQP 105


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 GPVGPMGRPG 10
GP+GP G
Sbjct: 40 GPMGPTAMAG 49




45|SequenceR|230|221|PKGPEGPVGP

>sp|TRM1_HALWD|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloquadratum walsbyi

Query: 3 GPEGPVGP 10
GPE P+GP
Sbjct: 117 GPESPLGP 124


>sp|Y2246_METAC|UNCHARACTERIZED serpin-like protein MA_2246|Methanosarcina acetivorans (strain ATCC

Query: 4 PEGPVGP 10
PEG +GP
Sbjct: 198 PEGEIGP 204


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 2 KGPEGPVGP 10
KG GP+GP
Sbjct: 437 KGGMGPMGP 445


>sp|Y1318_METJA|UNCHARACTERIZED protein MJ1318|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PKGPEGPVG 9
P G GPVG
Sbjct: 140 PDGSIGPVG 148


Query: 4 PEGPVGP 10
P+G +GP
Sbjct: 140 PDGSIGP 146


>sp|HEM1_NATPD|GLUTAMYL-TRNA reductase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PKGPEG 6
P GPEG
Sbjct: 426 PDGPEG 431


>sp|GFCR_METHJ|TRANSCRIPTIONAL regulator GfcR|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 KGPEGPV 8
K PEGPV
Sbjct: 79 KNPEGPV 85


>sp|GYRA_HALL2|DNA gyrase subunit A|Haloferax lucentense (strain DSM 14919

Query: 2 KGPEGPVG 9
KGP+ P G
Sbjct: 224 KGPDFPTG 231


>sp|SYW_PYRAE|TRYPTOPHAN--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 KGPEGPV 8
+GP GPV
Sbjct: 79 RGPSGPV 85


>sp|SYW_PYRCJ|TRYPTOPHAN--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 KGPEGPV 8
+GP GPV
Sbjct: 79 RGPSGPV 85


>sp|DP2L_CENSY|DNA polymerase II large subunit|Cenarchaeum symbiosum (strain A)

Query: 3 GPEGPV 8
GPEGPV
Sbjct: 520 GPEGPV 525




46|SequenceR|235|226|LGQEGPKGPE

>sp|TRM1_HALWD|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloquadratum walsbyi

Query: 2 GQEGPKGPE 10
G E P GPE
Sbjct: 117 GPESPLGPE 125


>sp|CPGS_PYRHO|CYCLIC 2,3-diphosphoglycerate synthetase|Pyrococcus horikoshii (strain

Query: 1 LGQEGPKGPE 10
+G+ GP+ PE
Sbjct: 157 MGRGGPESPE 166


>sp|RS3A_AERPE|SMALL ribosomal subunit protein eS1|Aeropyrum pernix (strain ATCC 700893

Query: 5 GPKGPE 10
GP GPE
Sbjct: 196 GPNGPE 201


>sp|SYI_METMJ|ISOLEUCINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 LGQEGPK 7
G+EGPK
Sbjct: 891 FGKEGPK 897


>sp|GLCD3_SACS2|GLUCOSE 1-dehydrogenase 3|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LGQEGPKGPE 10
LGQ KGPE
Sbjct: 70 LGQVIDKGPE 79


>sp|TRPD_METS3|ANTHRANILATE phosphoribosyltransferase|Methanobrevibacter smithii (strain ATCC

Query: 2 GQEGPK 7
GQ+GPK
Sbjct: 280 GQKGPK 285




47|SequenceR|240|231|GLPGMLGQEG

>sp|MDH_METKA|MALATE dehydrogenase|Methanopyrus kandleri (strain AV19 /

Query: 1 GLPGMLGQEG 10
G+P LG+EG
Sbjct: 270 GVPARLGREG 279


>sp|RNZ_SULTO|RIBONUCLEASE Z|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 GLPGMLGQEG 10
GLPGM+ G
Sbjct: 68 GLPGMIETMG 77


>sp|GATE_METMP|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanococcus maripaludis (strain DSM

Query: 1 GLPGMLGQE 9
G GM+G+E
Sbjct: 312 GFSGMIGRE 320


>sp|GATE_METM6|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanococcus maripaludis (strain C6 /

Query: 1 GLPGMLGQE 9
G GM+G+E
Sbjct: 312 GFSGMIGRE 320


>sp|GATE_METM5|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanococcus maripaludis (strain C5 /

Query: 1 GLPGMLGQE 9
G GM+G+E
Sbjct: 312 GFSGMIGRE 320


>sp|GATE_METM7|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanococcus maripaludis (strain C7 /

Query: 1 GLPGMLGQE 9
G GM+G+E
Sbjct: 312 GFSGMIGRE 320


>sp|IF2B_SULAC|TRANSLATION initiation factor 2 subunit|Sulfolobus acidocaldarius (strain

Query: 3 PGMLGQEG 10
PG LG+ G
Sbjct: 74 PGSLGENG 81


>sp|AATA_METS5|A-TYPE ATP synthase subunit A|Metallosphaera sedula (strain ATCC 51363

Query: 3 PGMLGQ 8
PG+LGQ
Sbjct: 77 PGLLGQ 82


>sp|END4_METPE|PROBABLE endonuclease 4|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 4 GMLGQEG 10
GM+G+EG
Sbjct: 238 GMIGEEG 244




48|SequenceR|245|236|KQGPPGLPGM

>sp|GLPB_HALSA|PROBABLE anaerobic glycerol-3-phosphate dehydrogenase subunit|Halobacterium

Query: 3 GPPGLPGM 10
GPP LPG+
Sbjct: 255 GPPSLPGL 262


>sp|GLPB_HALS3|PROBABLE anaerobic glycerol-3-phosphate dehydrogenase subunit|Halobacterium

Query: 3 GPPGLPGM 10
GPP LPG+
Sbjct: 255 GPPSLPGL 262


>sp|PURE_METJA|N5-CARBOXYAMINOIMIDAZOLE ribonucleotide mutase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 QGPPGLP 8
Q PPG+P
Sbjct: 97 QMPPGIP 103


>sp|ILVD_METST|DIHYDROXY-ACID dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 431 EGPKGGPGM 439


>sp|Y1519_METJA|UNCHARACTERIZED protein MJ1519|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 PGLPGM 10
PGLPG+
Sbjct: 283 PGLPGV 288


>sp|ILVD_METMP|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain DSM 14266

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 430 EGPSGGPGM 438


>sp|THII_SACS2|PROBABLE tRNA sulfurtransferase|Saccharolobus solfataricus (strain ATCC

Query: 2 QGPPGLP 8
+GP GLP
Sbjct: 158 KGPKGLP 164


>sp|THII_SACI6|PROBABLE tRNA sulfurtransferase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 QGPPGLP 8
+GP GLP
Sbjct: 160 KGPKGLP 166


>sp|THII_SACI4|PROBABLE tRNA sulfurtransferase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 QGPPGLP 8
+GP GLP
Sbjct: 160 KGPKGLP 166


>sp|THII_SACI3|PROBABLE tRNA sulfurtransferase|Saccharolobus islandicus (strain M.16.27)

Query: 2 QGPPGLP 8
+GP GLP
Sbjct: 160 KGPKGLP 166


>sp|ILVD_PYRFU|DIHYDROXY-ACID dehydratase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 431 EGPKGGPGM 439


>sp|ILVD_SACS2|DIHYDROXY-ACID dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 437 EGPKGAPGM 445


>sp|ILVD_SACI7|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 437 EGPKGAPGM 445


>sp|ILVD_SACI6|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 437 EGPKGAPGM 445


>sp|ILVD_SACI4|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 437 EGPKGAPGM 445


>sp|ILVD_SACI3|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 437 EGPKGAPGM 445


>sp|ILVD_SACI2|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 437 EGPKGAPGM 445


>sp|ILVD_SACI1|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 437 EGPKGAPGM 445


>sp|ILVD_PYRAB|DIHYDROXY-ACID dehydratase|Pyrococcus abyssi (strain GE5 /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 431 EGPKGGPGM 439


>sp|ILVD_METM5|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C5 /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 430 EGPSGGPGM 438


>sp|ACYP_SACS2|ACYLPHOSPHATASE solfataricus (strain ATCC 35092

Query: 1 KQGPPG 6
KQGPP
Sbjct: 73 KQGPPA 78


>sp|GATD_PYRAB|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrococcus abyssi (strain GE5 /

Query: 2 QGPPGLP 8
+G PGLP
Sbjct: 86 EGKPGLP 92


>sp|PYRC_METJA|DIHYDROOROTASE jannaschii (strain ATCC 43067

Query: 1 KQGPPGLPGM 10
K P G+PG+
Sbjct: 316 KNCPSGIPGI 325


>sp|ILVD_METVS|DIHYDROXY-ACID dehydratase|Methanococcus vannielii (strain ATCC 35089

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 430 EGPSGGPGM 438


>sp|ILVD_METM7|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C7 /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 430 EGPSGGPGM 438


>sp|ILVD_METM6|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C6 /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 430 EGPSGGPGM 438


>sp|PORA_METJA|PYRUVATE synthase subunit PorA|Methanocaldococcus jannaschii (strain ATCC

Query: 2 QGPPGLP 8
QGP G+P
Sbjct: 212 QGPVGVP 218


>sp|ILVD_METS3|DIHYDROXY-ACID dehydratase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 431 EGPKGGPGM 439


>sp|ILVD_ARCFU|DIHYDROXY-ACID dehydratase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 GPPGLPGM 10
GP G PGM
Sbjct: 430 GPKGAPGM 437


Query: 2 QGPPGLPGM 10
+G PG+P M
Sbjct: 432 KGAPGMPEM 440


>sp|KAD_THEKO|ADENYLATE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 KQGPPGLPGM 10
K PP +PG+
Sbjct: 138 KYNPPKVPGI 147


>sp|ILVD_META3|DIHYDROXY-ACID dehydratase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 430 EGPAGGPGM 438


>sp|ILVD_METKA|DIHYDROXY-ACID dehydratase|Methanopyrus kandleri (strain AV19 /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 430 EGPAGGPGM 438


>sp|THII_PYRAE|TRNA sulfurtransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 QGPPGLP 8
+GP GLP
Sbjct: 160 EGPGGLP 166


>sp|ILVD_PYRNV|DIHYDROXY-ACID dehydratase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 438 EGPKGAPGM 446


>sp|ILVD_PYRCJ|DIHYDROXY-ACID dehydratase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 438 EGPKGAPGM 446


>sp|ILVD_METTH|DIHYDROXY-ACID dehydratase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 431 EGPKGGPGM 439


>sp|FAU1_HYPBU|PROBABLE ribonuclease FAU-1|Hyperthermus butylicus (strain DSM 5456

Query: 1 KQGPPGL 7
++GPPG+
Sbjct: 238 EEGPPGV 244


>sp|ILVD_METBU|DIHYDROXY-ACID dehydratase|Methanococcoides burtonii (strain DSM 6242

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 434 EGPKGGPGM 442


>sp|ILVD_METJA|DIHYDROXY-ACID dehydratase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 431 EGPAGGPGM 439


>sp|ILVD_PYRIL|DIHYDROXY-ACID dehydratase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 438 EGPKGAPGM 446


>sp|ILVD_PYRAR|DIHYDROXY-ACID dehydratase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 438 EGPKGAPGM 446


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 KQGPPGLPG 9
+ GP G PG
Sbjct: 438 RNGPEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 KQGPPGLPG 9
+ GP G PG
Sbjct: 438 RNGPEGHPG 446


>sp|ILVD_PYRAE|DIHYDROXY-ACID dehydratase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 438 EGPKGAPGM 446


>sp|HIS7_METMJ|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 GPPGLPG 9
GP G+PG
Sbjct: 125 GPGGIPG 131


>sp|ILVD_PICTO|DIHYDROXY-ACID dehydratase|Picrophilus torridus (strain ATCC 700027

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 432 EGPKGGPGM 440


>sp|ILVD_HALMA|DIHYDROXY-ACID dehydratase|Haloarcula marismortui (strain ATCC 43049

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 450 EGPQGGPGM 458


>sp|Y189_METAR|UPF0313 protein UNCMA_01890|Methanocella arvoryzae (strain DSM 22066

Query: 2 QGPPGLP 8
Q PP LP
Sbjct: 251 QNPPALP 257


>sp|HELS_HALSA|ATP-DEPENDENT DNA helicase Hel308|Halobacterium salinarum (strain ATCC 700922

Query: 5 PGLPG 9
PGLPG
Sbjct: 7 PGLPG 11


>sp|HELS_HALS3|ATP-DEPENDENT DNA helicase Hel308|Halobacterium salinarum (strain ATCC 29341

Query: 5 PGLPG 9
PGLPG
Sbjct: 7 PGLPG 11


>sp|ILVD_SULAC|DIHYDROXY-ACID dehydratase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 438 EGPKGGPGM 446


>sp|ILVD_METMA|DIHYDROXY-ACID dehydratase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 434 EGPKGGPGM 442


>sp|ILVD1_METAC|DIHYDROXY-ACID dehydratase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 434 EGPKGGPGM 442


>sp|ILVD_METBF|DIHYDROXY-ACID dehydratase|Methanosarcina barkeri (strain Fusaro /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 434 EGPKGGPGM 442


>sp|ILVD2_METAC|DIHYDROXY-ACID dehydratase 2|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 434 EGPKGGPGM 442


>sp|ILVD_NATPD|DIHYDROXY-ACID dehydratase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 465 EGPEGGPGM 473


>sp|ILVD_AERPE|DIHYDROXY-ACID dehydratase|Aeropyrum pernix (strain ATCC 700893

Query: 3 GPPGLPGM 10
GP G PGM
Sbjct: 435 GPKGAPGM 442


>sp|ILVD_IGNH4|DIHYDROXY-ACID dehydratase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 431 EGPRGGPGM 439


>sp|ILVD_METTP|DIHYDROXY-ACID dehydratase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 428 EGPKGGPGM 436


>sp|ILVD_METB6|DIHYDROXY-ACID dehydratase|Methanoregula boonei (strain DSM 21154

Query: 2 QGPPGLPGM 10
+GP G PGM
Sbjct: 432 EGPRGGPGM 440




49|SequenceR|250|241|AGISGKQGPP

>sp|D89S1_PYRHO|DAMAGE-CONTROL phosphatase PH1575|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 ISGKQGP 9
I+GK+GP
Sbjct: 181 IAGKEGP 187


>sp|PYRI_PYRAE|ASPARTATE carbamoyltransferase regulatory chain|Pyrobaculum aerophilum

Query: 2 GISGKQG 8
GISGK+G
Sbjct: 32 GISGKEG 38


>sp|AROB_SULAC|3-DEHYDROQUINATE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 AGISGKQG 8
AGI GK G
Sbjct: 127 AGIGGKNG 134


>sp|SUCD_METTH|SUCCINATE--COA ligase [ADP-forming] subunit alpha|Methanothermobacter

Query: 2 GISGKQG 8
GI+GKQG
Sbjct: 19 GITGKQG 25


>sp|Y305_METJA|UNCHARACTERIZED protein MJ0305|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AGISGKQGP 9
G +GK+GP
Sbjct: 106 GGSAGKEGP 114


>sp|NPD_PYRAB|NAD-DEPENDENT protein deacylase|Pyrococcus abyssi (strain GE5 /

Query: 1 AGISGKQGPP 10
AGIS + G P
Sbjct: 21 AGISAESGVP 30


>sp|PYRI_PYRIL|ASPARTATE carbamoyltransferase regulatory chain|Pyrobaculum islandicum

Query: 2 GISGKQG 8
GI+GK+G
Sbjct: 32 GITGKEG 38


>sp|PYRC_METMA|DIHYDROOROTASE mazei (strain ATCC BAA-159

Query: 2 GISGKQGPP 10
G+ GK PP
Sbjct: 280 GVFGKMNPP 288




50|SequenceR|255|246|GPIGPAGISG

>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 1 GPIGPAGI 8
GP+GP GI
Sbjct: 217 GPMGPTGI 224


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 GPIGPAGISG 10
GP+GP ++G
Sbjct: 40 GPMGPTAMAG 49


>sp|Y2139_METS5|MEMO1 family protein Msed_2139|Metallosphaera sedula (strain ATCC 51363

Query: 2 PIGPAGI 8
PIGP GI
Sbjct: 30 PIGPGGI 36


>sp|CDC69_HALSA|ORC1-TYPE DNA replication protein 9|Halobacterium salinarum (strain ATCC

Query: 1 GPIGPAGI 8
GP+GP+ I
Sbjct: 294 GPLGPSEI 301


>sp|SYI_NATPD|ISOLEUCINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 PIGPAGI 8
P+GP G+
Sbjct: 350 PVGPDGV 356


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 GPIGPAGISG 10
GP+GP ++G
Sbjct: 40 GPMGPTAMAG 49


>sp|PGK_METMA|PHOSPHOGLYCERATE kinase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 GPAGIS 9
GPAG+S
Sbjct: 331 GPAGVS 336


>sp|PGK2_METAC|PHOSPHOGLYCERATE kinase 2|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 GPAGIS 9
GPAG+S
Sbjct: 331 GPAGVS 336


>sp|SEPS_METMJ|O-PHOSPHOSERINE--TRNA(CYS) ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 GP--IGPAGISG 10
GP + PAG+SG
Sbjct: 23 GPSVLTPAGVSG 34


>sp|NIFE_METTM|NITROGENASE iron-molybdenum cofactor biosynthesis protein|Methanothermobacter

Query: 4 GPAGISG 10
GP G+SG
Sbjct: 472 GPGGMSG 478




51|SequenceR|260|251|KQGNMGPIGP

>sp|COXX_KORCO|PROTOHEME IX farnesyltransferase|Korarchaeum cryptofilum (strain OPF8)

Query: 5 MGPIGP 10
MGP+GP
Sbjct: 230 MGPLGP 235


>sp|GSA_METAR|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanocella arvoryzae (strain DSM 22066

Query: 3 GNMGPIGP 10
GNMGPI P
Sbjct: 207 GNMGPILP 214


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 1 KQGNMGPIGP 10
++G MGP+GP
Sbjct: 436 QKGGMGPMGP 445


>sp|GSA_METBF|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina barkeri (strain Fusaro /

Query: 3 GNMGPIGP 10
GN+GPI P
Sbjct: 211 GNIGPITP 218


>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 3 GNMGPIGP 10
G+ GP+GP
Sbjct: 214 GHKGPMGP 221


>sp|Y762_METJA|UNCHARACTERIZED transporter MJ0762|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 NMGPIG 9
N+GPIG
Sbjct: 215 NLGPIG 220


>sp|Y576_METJA|UNCHARACTERIZED transporter MJ0576|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 NMGPIG 9
N+GPIG
Sbjct: 222 NLGPIG 227


>sp|GSA_METAC|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 GNMGPIGP 10
GN+GPI P
Sbjct: 211 GNIGPILP 218


>sp|G1PDH_CENSY|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Cenarchaeum symbiosum (strain A)

Query: 2 QGNMGPIGP 10
+GNMG +GP
Sbjct: 23 EGNMGDLGP 31


>sp|DNLI_METJA|DNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 KQGNMGPIG 9
++GN+ PIG
Sbjct: 474 EEGNLYPIG 482


>sp|GSA_METBU|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcoides burtonii (strain DSM 6242

Query: 3 GNMGPIGP 10
GN+GPI P
Sbjct: 208 GNIGPILP 215


>sp|GSA_METPE|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 3 GNMGPIGP 10
GN+GPI P
Sbjct: 205 GNIGPILP 212


>sp|SODF_METTM|SUPEROXIDE dismutase [Fe]|Methanothermobacter marburgensis (strain ATCC

Query: 3 GNMGP 7
GNMGP
Sbjct: 83 GNMGP 87


>sp|SODF_METTH|SUPEROXIDE dismutase [Fe]|Methanothermobacter thermautotrophicus (strain

Query: 3 GNMGP 7
GNMGP
Sbjct: 86 GNMGP 90


>sp|GSA_METMA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 GNMGPIGP 10
GN+GP+ P
Sbjct: 211 GNIGPVLP 218


>sp|GSA_METTP|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 GNMGPIGP 10
GN+GP+ P
Sbjct: 215 GNIGPVLP 222


>sp|FDHB_METTF|F420-DEPENDENT formate dehydrogenase subunit beta|Methanothermobacter

Query: 3 GNMGPIGP 10
GN G IGP
Sbjct: 206 GNWGVIGP 213


>sp|APGM_METS5|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Metallosphaera sedula (strain ATCC 51363

Query: 3 GNMGPIGP 10
G M PIGP
Sbjct: 46 GLMDPIGP 53


>sp|GSA_METMJ|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 GNMGPIGP 10
GN+GP+ P
Sbjct: 203 GNVGPVLP 210


>sp|GSA_METLZ|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 3 GNMGPIGP 10
GN+GP+ P
Sbjct: 203 GNVGPVLP 210


>sp|FDHB_METFO|F420-DEPENDENT formate dehydrogenase subunit beta|Methanobacterium formicicum

Query: 3 GNMGPIGP 10
GN G IGP
Sbjct: 207 GNWGVIGP 214


>sp|GSA_METHJ|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 GNMGPIGP 10
GN+GP+ P
Sbjct: 206 GNIGPVLP 213


>sp|GSA_METB6|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanoregula boonei (strain DSM 21154

Query: 3 GNMGPIGP 10
GN+GP+ P
Sbjct: 203 GNIGPVLP 210


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 5 MGPIGP 10
+GP+GP
Sbjct: 39 LGPMGP 44


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 5 MGPIGP 10
+GP+GP
Sbjct: 39 LGPMGP 44




52|SequenceR|265|256|LGPEGKQGNM

>sp|HDRD_METAC|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina acetivorans

Query: 1 LGPEGKQG 8
+GP GKQG
Sbjct: 122 IGPFGKQG 129


>sp|Y453_ARCFU|UNCHARACTERIZED protein AF_0453|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LGPEGKQ 7
LGP+GK+
Sbjct: 40 LGPQGKR 46


>sp|SYS2_METVS|TYPE-2 serine--tRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 3 PEGKQGN 9
PEGK+G+
Sbjct: 38 PEGKEGD 44


>sp|Y512_METJA|UNCHARACTERIZED protein MJ0512|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GPEGKQGN 9
G EGK+GN
Sbjct: 221 GFEGKEGN 228


>sp|GPMI2_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanosarcina acetivorans (strain ATCC

Query: 3 PEGKQGN 9
PEG+ GN
Sbjct: 63 PEGQMGN 69


>sp|GPMI1_METBF|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 1|Methanosarcina barkeri (strain Fusaro /

Query: 3 PEGKQGN 9
PEG+ GN
Sbjct: 60 PEGQMGN 66


>sp|THSA_THEK8|CHAPERONIN subunit alpha|Thermococcus sp. (strain KS-8)

Query: 3 PEGKQG 8
PEG+QG
Sbjct: 528 PEGRQG 533


>sp|AMTAB_PYRHO|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 4 EGKQGNM 10
EGK+GN+
Sbjct: 380 EGKKGNV 386


>sp|AMTAB_PYRAB|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 4 EGKQGNM 10
EGK+GN+
Sbjct: 380 EGKKGNV 386


>sp|SYW_SULTO|TRYPTOPHAN--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GPEGK 6
GPEGK
Sbjct: 250 GPEGK 254


>sp|SYW_SULAC|TRYPTOPHAN--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 GPEGK 6
GPEGK
Sbjct: 250 GPEGK 254


>sp|SYW_SACS2|TRYPTOPHAN--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GPEGK 6
GPEGK
Sbjct: 249 GPEGK 253


>sp|GPMI_HALMA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Haloarcula marismortui (strain ATCC 43049

Query: 3 PEGKQGN 9
PEG+ GN
Sbjct: 53 PEGQMGN 59


>sp|KAE1B_METAC|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 GPEGKQ 7
GPEGK+
Sbjct: 368 GPEGKK 373


>sp|KAE1B_METBF|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 GPEGKQ 7
GPEGK+
Sbjct: 366 GPEGKK 371


>sp|GPMI_METBU|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcoides burtonii (strain DSM

Query: 3 PEGKQGN 9
PEG+ GN
Sbjct: 57 PEGQMGN 63


>sp|ARGB_METBU|ACETYLGLUTAMATE kinase|Methanococcoides burtonii (strain DSM 6242

Query: 1 LGPEGKQGNM 10
+G GK GNM
Sbjct: 126 VGLSGKDGNM 135


>sp|KAE1B_METMA|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 GPEGKQG 8
GPEGK+
Sbjct: 368 GPEGKRA 374




53|SequenceR|270|261|GVAGPLGPEG

>sp|RS3A_AERPE|SMALL ribosomal subunit protein eS1|Aeropyrum pernix (strain ATCC 700893

Query: 2 VAGPLGPE 9
V GP GPE
Sbjct: 194 VPGPNGPE 201


>sp|TRM1_HALWD|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloquadratum walsbyi

Query: 1 GVAGPLGPEG 10
G PLGPE
Sbjct: 117 GPESPLGPEA 126


>sp|CDC69_HALSA|ORC1-TYPE DNA replication protein 9|Halobacterium salinarum (strain ATCC

Query: 4 GPLGP 8
GPLGP
Sbjct: 294 GPLGP 298


>sp|RL37A_PICTO|LARGE ribosomal subunit protein eL43|Picrophilus torridus (strain ATCC

Query: 1 GVAGPLGP 8
GVAG GP
Sbjct: 9 GVAGRFGP 16


>sp|CBIMQ_METLZ|PUTATIVE fused cobalt transport protein|Methanocorpusculum labreanum (strain

Query: 1 GVAGPLG 7
GVAGPL
Sbjct: 115 GVAGPLA 121


>sp|DHYS_METTH|PROBABLE deoxyhypusine synthase|Methanothermobacter thermautotrophicus

Query: 2 VAGPLGPEG 10
VAGPL P G
Sbjct: 57 VAGPLVPGG 65


>sp|Y392_METJA|ZINC metalloprotease MJ0392|Methanocaldococcus jannaschii (strain ATCC

Query: 1 GVAGPL 6
G+AGPL
Sbjct: 95 GIAGPL 100


>sp|COXX_KORCO|PROTOHEME IX farnesyltransferase|Korarchaeum cryptofilum (strain OPF8)

Query: 4 GPLGP 8
GPLGP
Sbjct: 231 GPLGP 235


>sp|RL37A_THEAC|LARGE ribosomal subunit protein eL43|Thermoplasma acidophilum (strain

Query: 1 GVAGPLGP 8
GVAG GP
Sbjct: 9 GVAGRFGP 16


>sp|RS12_METJA|SMALL ribosomal subunit protein uS12|Methanocaldococcus jannaschii

Query: 1 GVAGPLGPEG 10
G+ GP GP
Sbjct: 107 GIGGPKGPRA 116


>sp|AOR_THEKO|TUNGSTEN-CONTAINING aldehyde ferredoxin oxidoreductase|Thermococcus kodakarensis

Query: 3 AGPLGPEG 10
A PLGPE
Sbjct: 50 ADPLGPEN 57


>sp|GLKA_PYRHO|ADP-DEPENDENT glucose/glucosamine kinase|Pyrococcus horikoshii (strain ATCC

Query: 1 GVAGPLGPEG 10
G+A P+G +G
Sbjct: 390 GLAVPIGEQG 399


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 1 GVAGPLGP 8
G GP+GP
Sbjct: 438 GGMGPMGP 445


>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 1 GVAGPLGPEG 10
G GP+GP G
Sbjct: 214 GHKGPMGPTG 223


>sp|HMDH_METTH|3-HYDROXY-3-METHYLGLUTARYL-COENZYME A reductase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 GVAGPLGPEG 10
GVAGPL G
Sbjct: 72 GVAGPLRVRG 81


>sp|HMDH_PYRAB|3-HYDROXY-3-METHYLGLUTARYL-COENZYME A reductase|Pyrococcus abyssi (strain GE5 /

Query: 1 GVAGPLGPEG 10
GVAGPL G
Sbjct: 77 GVAGPLKING 86


>sp|HMDH_HALVD|3-HYDROXY-3-METHYLGLUTARYL-COENZYME A reductase|Haloferax volcanii (strain ATCC 29605

Query: 1 GVAGPLGPEG 10
GVAGP+ +G
Sbjct: 75 GVAGPVSVDG 84


>sp|HMDH_PYRHO|3-HYDROXY-3-METHYLGLUTARYL-COENZYME A reductase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GVAGPLGPEG 10
GVAGPL G
Sbjct: 82 GVAGPLKING 91




54|SequenceR|275|266|PIGNQGVAGP

>sp|RPO1C_METJA|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanocaldococcus jannaschii (strain

Query: 1 PIGNQGVAG 9
PIG GVAG
Sbjct: 785 PIGRHGVAG 793


>sp|COFD_METBU|2-PHOSPHO-L-LACTATE transferase|Methanococcoides burtonii (strain DSM 6242

Query: 2 IGNQGVAGP 10
IGN+ V+GP
Sbjct: 223 IGNEAVSGP 231


>sp|COFD_METJA|2-PHOSPHO-L-LACTATE transferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IGNQGVAGP 10
+GN V+GP
Sbjct: 231 VGNSAVSGP 239


>sp|FDHB_METTF|F420-DEPENDENT formate dehydrogenase subunit beta|Methanothermobacter

Query: 2 IGNQGVAGP 10
+GN GV GP
Sbjct: 205 LGNWGVIGP 213


>sp|RL18_PYRAR|LARGE ribosomal subunit protein uL18|Pyrobaculum arsenaticum (strain

Query: 1 PIGNQGVAG 9
PIG++ VAG
Sbjct: 53 PIGDETVAG 61


>sp|COFD_METLZ|2-PHOSPHO-L-LACTATE transferase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 2 IGNQGVAGP 10
IGN+ V+GP
Sbjct: 227 IGNRPVSGP 235


>sp|CDC6C_HALMA|ORC1-TYPE DNA replication protein 3|Haloarcula marismortui (strain ATCC 43049

Query: 4 NQGVAGP 10
N+GV GP
Sbjct: 227 NEGVVGP 233


>sp|COFD_METAC|2-PHOSPHO-L-LACTATE transferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 IGNQGVAGP 10
IGN V+GP
Sbjct: 223 IGNAPVSGP 231


>sp|ABLA_METMA|L-LYSINE 2,3-aminomutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PIGNQGV 7
P+GNQ V
Sbjct: 255 PLGNQSV 261


>sp|COFD_METMA|2-PHOSPHO-L-LACTATE transferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 IGNQGVAGP 10
IGN V+GP
Sbjct: 223 IGNAPVSGP 231


>sp|COFD_METBF|2-PHOSPHO-L-LACTATE transferase|Methanosarcina barkeri (strain Fusaro /

Query: 2 IGNQGVAGP 10
IGN V+GP
Sbjct: 223 IGNAPVSGP 231


>sp|Y362_METJA|UNCHARACTERIZED protein MJ0362|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PIGNQGV 7
PIGN G+
Sbjct: 24 PIGNSGM 30


>sp|FDHB_METFO|F420-DEPENDENT formate dehydrogenase subunit beta|Methanobacterium formicicum

Query: 3 GNQGVAGP 10
GN GV GP
Sbjct: 207 GNWGVIGP 214


>sp|COFD_METB6|2-PHOSPHO-L-LACTATE transferase|Methanoregula boonei (strain DSM 21154

Query: 2 IGNQGVAGP 10
IGN V+GP
Sbjct: 224 IGNVPVSGP 232


>sp|DTDA_METLZ|D-AMINOACYL-TRNA deacylase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 PIGNQGVAG 9
P GN G+AG
Sbjct: 84 PAGNFGIAG 92




55|SequenceR|280|271|EGKPGPIGNQ

>sp|FEN_THEAC|FLAP endonuclease 1|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 EGKPGPIGNQ 10
+GKP P+ N+
Sbjct: 80 DGKPSPLKNR 89


>sp|FEN_THEVO|FLAP endonuclease 1|Thermoplasma volcanium (strain ATCC 51530

Query: 1 EGKPGPIGNQ 10
+GKP P+ N+
Sbjct: 80 DGKPSPLKNR 89


>sp|CDPAS_META3|CDP-ARCHAEOL synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 EGKPGPIGNQ 10
+G+P PI +Q
Sbjct: 119 QGRPAPILDQ 128


>sp|AMT3_ARCFU|AMMONIUM transporter Amt3|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EGKPGPIG 8
+GKPG +G
Sbjct: 241 KGKPGSLG 248


>sp|AMT1_ARCFU|AMMONIUM transporter Amt1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EGKPGPIG 8
+GKPG +G
Sbjct: 241 KGKPGSLG 248


>sp|SYE_METTM|GLUTAMATE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 1 EGKPGPI 7
EG PGPI
Sbjct: 415 EGLPGPI 421


>sp|Y1242_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 3 KPGPIG 8
KPGP+G
Sbjct: 362 KPGPMG 367


>sp|Y1588_METJA|UNCHARACTERIZED protein MJ1588|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EGKPGPI 7
EGKP P+
Sbjct: 29 EGKPTPL 35


>sp|LIPA_SACS2|LIPOYL synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 EGKPGPIGNQ 10
+GKP P+ ++
Sbjct: 68 KGKPSPLDDE 77


>sp|AROC_HALMA|CHORISMATE synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 EGKPGPIGNQ 10
+G P P+GN
Sbjct: 273 DGHPTPVGND 282


>sp|T2M2_AERPE|PUTATIVE type II restriction enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 1 EGKPGPIG 8
EGK GPI
Sbjct: 131 EGKVGPIA 138




56|SequenceR|285|276|GQEGPEGKPG

>sp|Y444_METMA|PUTATIVE HTH-type transcriptional regulatory protein|Methanosarcina mazei

Query: 2 QEGPEGKPG 10
+E P+GKPG
Sbjct: 206 KEEPKGKPG 214


>sp|TDXH2_THEAC|PEROXIREDOXIN 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 GQEGPEGKP 9
GQEG EG P
Sbjct: 167 GQEGIEGAP 175


>sp|KAE1B_METMA|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 QEGPEGK 8
QEGPEGK
Sbjct: 366 QEGPEGK 372


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 2 QEGPEGKPG 10
+ GPEG PG
Sbjct: 438 RNGPEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 2 QEGPEGKPG 10
+ GPEG PG
Sbjct: 438 RNGPEGHPG 446


>sp|ILVD_METST|DIHYDROXY-ACID dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 431 EGPKGGPG 438


>sp|ILVD_PYRFU|DIHYDROXY-ACID dehydratase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 431 EGPKGGPG 438


>sp|KAE1B_METBF|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 QEGPEGK 8
+EGPEGK
Sbjct: 364 EEGPEGK 370


>sp|ILVD_PYRAB|DIHYDROXY-ACID dehydratase|Pyrococcus abyssi (strain GE5 /

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 431 EGPKGGPG 438


>sp|FTRL_METTH|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase-like protein|Methanothermobacter

Query: 1 GQEGPEGKPG 10
G++ P+G+PG
Sbjct: 61 GEDTPDGRPG 70


>sp|ILVD_SACS2|DIHYDROXY-ACID dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 437 EGPKGAPG 444


>sp|ILVD_SACI7|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 437 EGPKGAPG 444


>sp|ILVD_SACI6|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.4 /

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 437 EGPKGAPG 444


>sp|ILVD_SACI4|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.14.25 /

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 437 EGPKGAPG 444


>sp|ILVD_SACI3|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 437 EGPKGAPG 444


>sp|ILVD_SACI2|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 437 EGPKGAPG 444


>sp|ILVD_SACI1|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 437 EGPKGAPG 444


>sp|ILVD_METTH|DIHYDROXY-ACID dehydratase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 431 EGPKGGPG 438


>sp|ILVD_METS3|DIHYDROXY-ACID dehydratase|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 431 EGPKGGPG 438


>sp|ILVD_SULAC|DIHYDROXY-ACID dehydratase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 438 EGPKGGPG 445


>sp|SYP_CALMQ|PROLINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 4 GPEGKP 9
GP+G+P
Sbjct: 4 GPQGRP 9


>sp|ILVD_METVS|DIHYDROXY-ACID dehydratase|Methanococcus vannielii (strain ATCC 35089

Query: 3 EGPEGKPG 10
EGP G PG
Sbjct: 430 EGPSGGPG 437


>sp|ILVD_METM5|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C5 /

Query: 2 QEGPEGKPG 10
EGP G PG
Sbjct: 429 HEGPSGGPG 437


>sp|ILVD_METMP|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain DSM 14266

Query: 3 EGPEGKPG 10
EGP G PG
Sbjct: 430 EGPSGGPG 437


>sp|ILVD_METB6|DIHYDROXY-ACID dehydratase|Methanoregula boonei (strain DSM 21154

Query: 3 EGPEGKPG 10
EGP G PG
Sbjct: 432 EGPRGGPG 439


>sp|KAE1B_METAC|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 3 EGPEGK 8
EGPEGK
Sbjct: 367 EGPEGK 372


>sp|ILVD_NATPD|DIHYDROXY-ACID dehydratase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 EGPEGKPG 10
EGPEG PG
Sbjct: 465 EGPEGGPG 472


>sp|ILVD_METM6|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C6 /

Query: 3 EGPEGKPG 10
EGP G PG
Sbjct: 430 EGPSGGPG 437


>sp|ILVD_IGNH4|DIHYDROXY-ACID dehydratase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 EGPEGKPG 10
EGP G PG
Sbjct: 431 EGPRGGPG 438


>sp|ILVD_METM7|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C7 /

Query: 3 EGPEGKPG 10
EGP G PG
Sbjct: 430 EGPSGGPG 437


>sp|FTR_METTH|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanothermobacter thermautotrophicus (strain

Query: 2 QEGPEGKPG 10
+E P+G+PG
Sbjct: 63 EETPDGRPG 71


>sp|ILVD_PYRAE|DIHYDROXY-ACID dehydratase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 438 EGPKGAPG 445


>sp|ILVD_METHJ|DIHYDROXY-ACID dehydratase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 429 EGPKGGPG 436


>sp|ILVD_PYRNV|DIHYDROXY-ACID dehydratase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 438 EGPKGAPG 445


>sp|ILVD_PYRIL|DIHYDROXY-ACID dehydratase|Pyrobaculum islandicum (strain DSM 4184

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 438 EGPKGAPG 445


>sp|ILVD_PYRAR|DIHYDROXY-ACID dehydratase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 438 EGPKGAPG 445


>sp|KATG_METB6|CATALASE-PEROXIDASE boonei (strain DSM 21154

Query: 3 EGPEGKP 9
EGP GKP
Sbjct: 223 EGPNGKP 229


>sp|ILVD_PYRCJ|DIHYDROXY-ACID dehydratase|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 438 EGPKGAPG 445


>sp|TRM5B_PYRAB|TRNA (guanine(37)-N(1))-methyltransferase Trm5b|Pyrococcus abyssi

Query: 4 GPEGKP 9
GPEG P
Sbjct: 280 GPEGDP 285


>sp|FTRL_METKA|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase-like protein|Methanopyrus kandleri (strain AV19

Query: 2 QEGPEGKPG 10
+E P+G+PG
Sbjct: 63 EETPDGRPG 71


>sp|ILVD_METTP|DIHYDROXY-ACID dehydratase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 428 EGPKGGPG 435


>sp|ILVD_PICTO|DIHYDROXY-ACID dehydratase|Picrophilus torridus (strain ATCC 700027

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 432 EGPKGGPG 439


>sp|ILVD_METS5|DIHYDROXY-ACID dehydratase|Metallosphaera sedula (strain ATCC 51363

Query: 3 EGPEGKPG 10
EGP+G PG
Sbjct: 437 EGPKGGPG 444


>sp|ILVD_META3|DIHYDROXY-ACID dehydratase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 3 EGPEGKPG 10
EGP G PG
Sbjct: 430 EGPAGGPG 437


>sp|FTR_METBU|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 1 GQEGPEGKPG 10
E P+G+PG
Sbjct: 62 ASETPDGRPG 71


>sp|FTR_METKA|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanopyrus kandleri (strain AV19 /

Query: 2 QEGPEGKPG 10
+E P+G+PG
Sbjct: 64 EETPDGRPG 72


>sp|SUCD_METJA|SUCCINATE--COA ligase [ADP-forming] subunit alpha|Methanocaldococcus jannaschii

Query: 1 GQEGPEGK 8
GQ PEGK
Sbjct: 240 GQSAPEGK 247


>sp|G3P_HALVA|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Haloarcula vallismortis (Halobacterium vallismortis)

Query: 3 EGPEGKP 9
+GP GKP
Sbjct: 193 DGPNGKP 199


>sp|ILVD_METMJ|DIHYDROXY-ACID dehydratase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 EGPEGKPG 10
EGP G PG
Sbjct: 429 EGPRGGPG 436


>sp|ILVD_METJA|DIHYDROXY-ACID dehydratase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 EGPEGKPG 10
EGP G PG
Sbjct: 431 EGPAGGPG 438


>sp|FTR_METBF|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 2 QEGPEGKPG 10
E P+G+PG
Sbjct: 63 SETPDGRPG 71


>sp|FTR_METAC|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 QEGPEGKPG 10
E P+G+PG
Sbjct: 63 SETPDGRPG 71


>sp|FTR_METMA|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 QEGPEGKPG 10
E P+G+PG
Sbjct: 63 SETPDGRPG 71


>sp|MUTS2_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 1 GQEGPEGKP 9
G GP+G+P
Sbjct: 256 GAVGPDGEP 264


>sp|FTR_ARCFU|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 QEGPEGKPG 10
E P+G+PG
Sbjct: 63 SETPDGRPG 71


>sp|ILVD_METKA|DIHYDROXY-ACID dehydratase|Methanopyrus kandleri (strain AV19 /

Query: 3 EGPEGKPG 10
EGP G PG
Sbjct: 430 EGPAGGPG 437


>sp|FTRL_METTM|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase-like protein|Methanothermobacter marburgensis

Query: 3 EGPEGKPG 10
E P+G+PG
Sbjct: 63 ETPDGRPG 70




57|SequenceR|290|281|ADGKEGQEGP

>sp|DACZ_METJA|DIADENYLATE cyclase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GKEGQEG 9
G+EG+EG
Sbjct: 173 GREGREG 179


>sp|GATA_METMA|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanosarcina mazei (strain ATCC

Query: 4 KEGQEGP 10
KEG EGP
Sbjct: 55 KEGHEGP 61


>sp|SYT_META3|THREONINE--TRNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 DGKEGQEG 9
DG++G+EG
Sbjct: 161 DGEKGEEG 168




58|SequenceR|295|286|PGNEGADGKE

>sp|NNR_THEPD|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Thermofilum pendens (strain DSM

Query: 1 PGNEGADG 8
PGN G DG
Sbjct: 55 PGNNGGDG 62


>sp|DNLI_METAR|DNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 GNEGADGKE 10
GNEG GK+
Sbjct: 400 GNEGLMGKD 408




59|SequenceR|300|291|GTDGKPGNEG

>sp|NTPPA_THEKO|DTTP/UTP pyrophosphatase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 GKPGNE 9
GKPGNE
Sbjct: 78 GKPGNE 83


>sp|SYI_NATPD|ISOLEUCINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 GTDGKPGNE 9
GT G PGNE
Sbjct: 541 GTLGYPGNE 549


>sp|FEN_IGNH4|FLAP endonuclease 1|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 GTDGKPGNEG 10
GTD PG +G
Sbjct: 238 GTDYTPGVKG 247


>sp|FEN_PICTO|FLAP endonuclease 1|Picrophilus torridus (strain ATCC 700027

Query: 1 GTDGKPGNEG 10
GTD PG +G
Sbjct: 234 GTDFNPGVKG 243


>sp|AROA_METPE|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanosphaerula palustris (strain ATCC

Query: 1 GTDGKP 6
GTDG+P
Sbjct: 74 GTDGRP 79


>sp|NTPPA_THEGJ|DTTP/UTP pyrophosphatase|Thermococcus gammatolerans (strain DSM 15229

Query: 4 GKPGNEG 10
GKP +EG
Sbjct: 75 GKPSDEG 81




60|SequenceR|305|296|PDGKEGTDGK

>sp|MCRB_METTM|METHYL-COENZYME M reductase I subunit|Methanothermobacter marburgensis (strain ATCC

Query: 2 DGKEGTDG 9
+GKEGT G
Sbjct: 259 NGKEGTVG 266


>sp|MCRB_METTH|METHYL-COENZYME M reductase I subunit|Methanothermobacter thermautotrophicus

Query: 2 DGKEGTDG 9
+GKEGT G
Sbjct: 259 NGKEGTVG 266




61|SequenceR|310|301|AASSGPDGKE

>sp|XYLH_SULAC|XYLOSE/ARABINOSE import permease protein XylH|Sulfolobus acidocaldarius (strain ATCC

Query: 1 AASSGPDGKE 10
A SS P+GK+
Sbjct: 326 ATSSSPEGKD 335


>sp|SYR_THEKO|ARGININE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 SSGPDGKE 10
++ PDGKE
Sbjct: 374 TTAPDGKE 381


>sp|MRE11_PYRAB|DNA double-strand break repair protein|Pyrococcus abyssi (strain GE5 /

Query: 5 GPDGKE 10
GPDGK+
Sbjct: 341 GPDGKD 346


>sp|RL18_HALSA|LARGE ribosomal subunit protein uL18|Halobacterium salinarum (strain

Query: 3 SSGPDGKE 10
++GPDG E
Sbjct: 50 TTGPDGDE 57


>sp|RL18_HALS3|LARGE ribosomal subunit protein uL18|Halobacterium salinarum (strain

Query: 3 SSGPDGKE 10
++GPDG E
Sbjct: 50 TTGPDGDE 57


>sp|METXA_HALPT|HOMOSERINE O-acetyltransferase|Haloferax prahovense (strain DSM 18310

Query: 2 ASSGPDGK 9
AS GPDG+
Sbjct: 111 ASEGPDGE 118


>sp|METXA_HALVD|HOMOSERINE O-acetyltransferase|Haloferax volcanii (strain ATCC 29605

Query: 2 ASSGPDGK 9
AS GPDG+
Sbjct: 111 ASEGPDGE 118


>sp|METXA_HALGM|HOMOSERINE O-acetyltransferase|Haloferax gibbonsii (strain ATCC 33959

Query: 2 ASSGPDGK 9
AS GPDG+
Sbjct: 111 ASEGPDGE 118


>sp|6PGD_HALVD|6-PHOSPHOGLUCONATE dehydrogenase, NAD(+)-dependent, decarboxylating|Haloferax volcanii

Query: 1 AASSGPDGK 9
A ++GPDG
Sbjct: 148 AVATGPDGH 156




62|SequenceR|315|306|EGKIGAASSG

***** No hits found ******


63|SequenceR|320|311|GSEGPEGKIG

>sp|SYW_SULTO|TRYPTOPHAN--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 GPEGKI 9
GPEGK+
Sbjct: 250 GPEGKM 255


>sp|SYW_SULAC|TRYPTOPHAN--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 GPEGKI 9
GPEGK+
Sbjct: 250 GPEGKM 255


>sp|SYW_SACS2|TRYPTOPHAN--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 4 GPEGKI 9
GPEGK+
Sbjct: 249 GPEGKM 254


>sp|GGR2_METST|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 GSEGPEGKIG 10
++GPE +IG
Sbjct: 154 AADGPESRIG 163


>sp|GFCR_METLZ|TRANSCRIPTIONAL regulator GfcR|Methanocorpusculum labreanum (strain ATCC 43576

Query: 3 EGPEGKIG 10
PEGKIG
Sbjct: 120 HNPEGKIG 127


>sp|RS4E_PYRAE|SMALL ribosomal subunit protein eS4|Pyrobaculum aerophilum (strain ATCC

Query: 1 GSEGPEGKI 9
GSEGP KI
Sbjct: 228 GSEGPVIKI 236


>sp|KAE1B_METBF|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 3 EGPEGK 8
EGPEGK
Sbjct: 365 EGPEGK 370


>sp|TOP3_SACS2|DNA topoisomerase 3|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 SEGPEGKI 9
S+G EGKI
Sbjct: 455 SKGDEGKI 462


>sp|RL6_HALSA|LARGE ribosomal subunit protein uL6|Halobacterium salinarum (strain

Query: 3 EGPEGKI 9
EGPEG +
Sbjct: 24 EGPEGSV 30


>sp|KAE1B_METAC|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 3 EGPEGK 8
EGPEGK
Sbjct: 367 EGPEGK 372


>sp|KAE1B_METMA|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 SEGPEGK 8
EGPEGK
Sbjct: 366 QEGPEGK 372




64|SequenceR|325|316|KQGPRGSEGP

>sp|METXA_METZD|HOMOSERINE O-acetyltransferase|Methanosalsum zhilinae (strain DSM 4017

Query: 3 GPRGSEGP 10
G RGS GP
Sbjct: 99 GCRGSTGP 106


>sp|CBIHC_ARCFU|COBALAMIN biosynthesis protein CbiHC|Archaeoglobus fulgidus (strain ATCC

Query: 2 QGPRGSEG 9
+GPRG G
Sbjct: 422 EGPRGGSG 429




65|SequenceR|330|321|LGPEGKQGPR

>sp|HDRD_METAC|DIHYDROMETHANOPHENAZINE:COB--COM heterodisulfide reductase subunit D|Methanosarcina acetivorans

Query: 1 LGPEGKQG 8
+GP GKQG
Sbjct: 122 IGPFGKQG 129


>sp|RL37A_NANEQ|LARGE ribosomal subunit protein eL43|Nanoarchaeum equitans (strain

Query: 1 LGPEGKQGPR 10
+GP G+ GPR
Sbjct: 9 VGPTGRFGPR 18


>sp|Y453_ARCFU|UNCHARACTERIZED protein AF_0453|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LGPEGKQ 7
LGP+GK+
Sbjct: 40 LGPQGKR 46


>sp|RL37A_METKA|LARGE ribosomal subunit protein eL43|Methanopyrus kandleri (strain AV19

Query: 1 LGPEGKQGPR 10
+GP G+ GPR
Sbjct: 7 VGPAGRFGPR 16


>sp|Y1511_METMJ|UPF0316 protein Memar_1511|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 LGPEGKQGP 9
L GKQGP
Sbjct: 129 LDAHGKQGP 137


>sp|RL37A_AERPE|LARGE ribosomal subunit protein eL43|Aeropyrum pernix (strain ATCC

Query: 1 LGPEGKQGPR 10
+GP G+ GPR
Sbjct: 7 VGPAGRYGPR 16


>sp|THSA_THEK8|CHAPERONIN subunit alpha|Thermococcus sp. (strain KS-8)

Query: 3 PEGKQG 8
PEG+QG
Sbjct: 528 PEGRQG 533


>sp|RL37A_METJA|LARGE ribosomal subunit protein eL43|Methanocaldococcus jannaschii

Query: 1 LGPEGKQGPR 10
+GP G+ GPR
Sbjct: 8 VGPTGRFGPR 17




66|SequenceR|335|326|GPLGPLGPEG

>sp|TRM1_HALWD|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloquadratum walsbyi

Query: 1 GPLGPLGPEG 10
GP PLGPE
Sbjct: 117 GPESPLGPEA 126


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 1 GPLGPLGP 8
G +GP+GP
Sbjct: 438 GGMGPMGP 445


Query: 1 GPLGPL 6
GP+GP+
Sbjct: 441 GPMGPM 446


>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 1 GPLGPLGPEG 10
G GP+GP G
Sbjct: 214 GHKGPMGPTG 223


>sp|KDGA_THETE|2-DEHYDRO-3-DEOXY-D-GLUCONATE/2-DEHYDRO-3-DEOXY-PHOSPHOGLUCONATE aldolase|Thermoproteus tenax

Query: 1 GPLGPLGPE 9
GP+ PL PE
Sbjct: 280 GPVYPLDPE 288


>sp|GALE_METJA|PUTATIVE UDP-glucose 4-epimerase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 PLGPLGPEG 10
P+ PL P G
Sbjct: 133 PINPLSPYG 141


>sp|KORB_ARCFU|2-OXOGLUTARATE synthase subunit KorB|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GPLGPLGPEG 10
G L P PEG
Sbjct: 130 GQLAPTTPEG 139


>sp|CDC69_HALSA|ORC1-TYPE DNA replication protein 9|Halobacterium salinarum (strain ATCC

Query: 1 GPLGP 5
GPLGP
Sbjct: 294 GPLGP 298


Query: 4 GPLGP 8
GPLGP
Sbjct: 294 GPLGP 298


>sp|COXX_KORCO|PROTOHEME IX farnesyltransferase|Korarchaeum cryptofilum (strain OPF8)

Query: 3 LGPLGP 8
+GPLGP
Sbjct: 230 MGPLGP 235


Query: 1 GPLGPL 6
GPLGP+
Sbjct: 231 GPLGPI 236


>sp|GSA_METBU|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcoides burtonii (strain DSM 6242

Query: 1 GPLGPLGPEG 10
G +GP+ PEG
Sbjct: 208 GNIGPILPEG 217


>sp|DAPA_NATPD|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 PLGPLGPE 9
PL PL PE
Sbjct: 273 PLNPLQPE 280


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 3 LGPLGP 8
LGP+GP
Sbjct: 39 LGPMGP 44


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 3 LGPLGP 8
LGP+GP
Sbjct: 39 LGPMGP 44


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 3 LGPLGP 8
LGP+GP
Sbjct: 39 LGPMGP 44


>sp|ACDA1_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 3 LGPLGPEG 10
LGP+GP
Sbjct: 39 LGPMGPSA 46




67|SequenceR|340|331|KIGPLGPLGP

>sp|TRM1_HALWD|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloquadratum walsbyi

Query: 3 GPLGPLGP 10
GP PLGP
Sbjct: 117 GPESPLGP 124


>sp|RL37A_METKA|LARGE ribosomal subunit protein eL43|Methanopyrus kandleri (strain AV19

Query: 1 KIGPLGPLGP 10
K+GP G GP
Sbjct: 6 KVGPAGRFGP 15


>sp|RL37A_NANEQ|LARGE ribosomal subunit protein eL43|Nanoarchaeum equitans (strain

Query: 1 KIGPLGPLGP 10
K+GP G GP
Sbjct: 8 KVGPTGRFGP 17


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 3 GPLGPLGP 10
G +GP+GP
Sbjct: 438 GGMGPMGP 445


Query: 2 IGPLGPL 8
+GP+GP+
Sbjct: 440 MGPMGPM 446


>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 3 GPLGPLG 9
GP+GP G
Sbjct: 217 GPMGPTG 223


Query: 3 GPLGPLGP 10
G GP+GP
Sbjct: 214 GHKGPMGP 221


>sp|TRI_THEVO|TRICORN protease|Thermoplasma volcanium (strain ATCC 51530

Query: 1 KIGPLG 6
KIGPLG
Sbjct: 360 KIGPLG 365


>sp|PUR2_METS3|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 IGPLGPLG 9
IGP PLG
Sbjct: 67 IGPEAPLG 74


>sp|UREG_METS5|UREASE accessory protein UreG|Metallosphaera sedula (strain ATCC 51363

Query: 1 KIGPLGPLG 9
K+G LGP+G
Sbjct: 3 KVGILGPVG 11


>sp|CDC69_HALSA|ORC1-TYPE DNA replication protein 9|Halobacterium salinarum (strain ATCC

Query: 3 GPLGP 7
GPLGP
Sbjct: 294 GPLGP 298


>sp|RL37A_METJA|LARGE ribosomal subunit protein eL43|Methanocaldococcus jannaschii

Query: 1 KIGPLGPLGP 10
K+GP G GP
Sbjct: 7 KVGPTGRFGP 16


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 5 LGPLGP 10
LGP+GP
Sbjct: 39 LGPMGP 44


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 5 LGPLGP 10
LGP+GP
Sbjct: 39 LGPMGP 44


Query: 2 IGPLGP 7
+GP+GP
Sbjct: 39 LGPMGP 44


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 5 LGPLGP 10
LGP+GP
Sbjct: 39 LGPMGP 44


>sp|UREG_SULTO|UREASE accessory protein UreG|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 KIGPLGPLGP 10
+IG LGP+G
Sbjct: 3 RIGVLGPVGS 12


>sp|ACDA1_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 5 LGPLGP 10
LGP+GP
Sbjct: 39 LGPMGP 44


>sp|PUR2_METJA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 IGPLGPLG 9
IGP PLG
Sbjct: 70 IGPEAPLG 77


>sp|NTPTH_THEAC|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 KIGPLGPLG 9
KIG GP+G
Sbjct: 7 KIGITGPVG 15


>sp|COXX_KORCO|PROTOHEME IX farnesyltransferase|Korarchaeum cryptofilum (strain OPF8)

Query: 2 IGPLGPL 8
+GPLGP+
Sbjct: 230 MGPLGPI 236


Query: 5 LGPLGP 10
+GPLGP
Sbjct: 230 MGPLGP 235


>sp|NTPTH_PICTO|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Picrophilus torridus (strain ATCC 700027

Query: 1 KIGPLGPLG 9
K+G GP+G
Sbjct: 3 KVGITGPVG 11


>sp|PUR2_METM5|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C5 /

Query: 2 IGPLGPLG 9
IGP PLG
Sbjct: 70 IGPEAPLG 77


>sp|PUR2_METM6|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C6 /

Query: 2 IGPLGPLG 9
IGP PLG
Sbjct: 70 IGPESPLG 77


>sp|PUR2_METMP|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 IGPLGPLG 9
IGP PLG
Sbjct: 70 IGPESPLG 77


>sp|PUR2_METM7|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcus maripaludis (strain C7 /

Query: 2 IGPLGPLG 9
IGP PLG
Sbjct: 70 IGPESPLG 77




68|SequenceR|345|336|FGPEGKIGPL

>sp|Y2246_METAC|UNCHARACTERIZED serpin-like protein MA_2246|Methanosarcina acetivorans (strain ATCC

Query: 3 PEGKIGP 9
PEG+IGP
Sbjct: 198 PEGEIGP 204


>sp|GFCR_METLZ|TRANSCRIPTIONAL regulator GfcR|Methanocorpusculum labreanum (strain ATCC 43576

Query: 3 PEGKIGPL 10
PEGKIG +
Sbjct: 122 PEGKIGSI 129


>sp|Y1318_METJA|UNCHARACTERIZED protein MJ1318|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PEGKIGPL 10
P+G IGP+
Sbjct: 140 PDGSIGPV 147


>sp|PSA_PYRAE|PROTEASOME subunit alpha|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 FGPEGKI 7
F PEGKI
Sbjct: 16 FSPEGKI 22


>sp|T2M2_AERPE|PUTATIVE type II restriction enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 2 GPEGKIGPL 10
G EGK+GP+
Sbjct: 129 GVEGKVGPI 137


>sp|TRM1_HALWD|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloquadratum walsbyi

Query: 2 GPEGKIGP 9
GPE +GP
Sbjct: 117 GPESPLGP 124


>sp|DAPB_METKA|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanopyrus kandleri (strain AV19 /

Query: 1 FGPEGKIGP 9
FG EG +GP
Sbjct: 190 FGREGNVGP 198


>sp|RL37A_METKA|LARGE ribosomal subunit protein eL43|Methanopyrus kandleri (strain AV19

Query: 2 GPEGKIGP 9
GP G+ GP
Sbjct: 8 GPAGRFGP 15


>sp|CARA_METMA|CARBAMOYL phosphate synthase small chain|Methanosarcina mazei (strain ATCC

Query: 1 FGPEGKIGPL 10
F PE + GPL
Sbjct: 341 FHPEAQAGPL 350


>sp|DNLI_THEAC|DNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 EGKIGP 9
EGK+GP
Sbjct: 45 EGKLGP 50


>sp|SYW_SULAC|TRYPTOPHAN--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 GPEGKI 7
GPEGK+
Sbjct: 250 GPEGKM 255


>sp|SYW_SULTO|TRYPTOPHAN--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GPEGKI 7
GPEGK+
Sbjct: 250 GPEGKM 255


>sp|CARA_METAC|CARBAMOYL phosphate synthase small chain|Methanosarcina acetivorans (strain

Query: 1 FGPEGKIGPL 10
F PE + GP+
Sbjct: 341 FHPEAQAGPM 350


>sp|RL1_PYRAR|LARGE ribosomal subunit protein uL1|Pyrobaculum arsenaticum (strain DSM

Query: 1 FGPEGKI 7
FGP GK+
Sbjct: 127 FGPRGKM 133


>sp|MCT_HALMA|SUCCINYL-COA:MESACONATE CoA-transferase|Haloarcula marismortui (strain ATCC 43049

Query: 2 GPEGKIGP 9
GP K+GP
Sbjct: 164 GPPTKVGP 171


>sp|RL37A_AERPE|LARGE ribosomal subunit protein eL43|Aeropyrum pernix (strain ATCC

Query: 2 GPEGKIGP 9
GP G+ GP
Sbjct: 8 GPAGRYGP 15


>sp|MCT_HALHT|SUCCINYL-COA:MESACONATE CoA-transferase|Haloarcula hispanica (strain ATCC 33960

Query: 2 GPEGKIGP 9
GP K+GP
Sbjct: 164 GPPTKVGP 171


>sp|GGR2_METST|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 GPEGKIG 8
GPE +IG
Sbjct: 157 GPESRIG 163


>sp|GCSPB_AERPE|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Aeropyrum pernix

Query: 4 EGKIGPL 10
+GK+GPL
Sbjct: 513 QGKLGPL 519


>sp|RL1_PYRIL|LARGE ribosomal subunit protein uL1|Pyrobaculum islandicum (strain DSM

Query: 1 FGPEGKI 7
FGP GK+
Sbjct: 127 FGPRGKM 133




69|SequenceR|350|341|GQPGIFGPEG

>sp|THSA_THEKO|CHAPERONIN subunit alpha|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 GQPGIFGPEG 10
GQP + PEG
Sbjct: 6 GQPVVILPEG 15


>sp|THSA_THEK1|CHAPERONIN subunit alpha|Thermococcus sp. (strain JCM 11816

Query: 1 GQPGIFGPEG 10
GQP + PEG
Sbjct: 6 GQPVVILPEG 15


>sp|RNZ_METJA|RIBONUCLEASE Z|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 IFGPEG 10
IFGPEG
Sbjct: 90 IFGPEG 95


>sp|RS3_SACS2|SMALL ribosomal subunit protein uS3|Saccharolobus solfataricus (strain

Query: 2 QPGIFGPE 9
+PGIFG E
Sbjct: 173 KPGIFGVE 180


>sp|THS_DESSY|THERMOSOME subunit|Desulfurococcus sp. (strain SY)

Query: 1 GQPGIFGPEG 10
GQP + PEG
Sbjct: 6 GQPVVILPEG 15


>sp|THSA_THEK8|CHAPERONIN subunit alpha|Thermococcus sp. (strain KS-8)

Query: 1 GQPGIFGPEG 10
GQP + PEG
Sbjct: 6 GQPVVILPEG 15


>sp|GLNA_METJA|GLUTAMINE synthetase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GQPGIFGPEG 10
G+P + PEG
Sbjct: 264 GEPSFYDPEG 273


>sp|THSB_THEK8|CHAPERONIN subunit beta|Thermococcus sp. (strain KS-8)

Query: 1 GQPGIFGPEG 10
GQP + PEG
Sbjct: 6 GQPVVILPEG 15


>sp|Y1051_ARCFU|UNCHARACTERIZED protein AF_1051|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 PGIFGPE 9
PGIF P+
Sbjct: 121 PGIFDPQ 127


>sp|THSB_THEKO|CHAPERONIN subunit beta|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 GQPGIFGPEG 10
GQP + PEG
Sbjct: 6 GQPVVILPEG 15


>sp|THSB_THEK1|CHAPERONIN subunit beta|Thermococcus sp. (strain JCM 11816

Query: 1 GQPGIFGPEG 10
GQP + PEG
Sbjct: 6 GQPVVILPEG 15


>sp|RNZ_THEAC|RIBONUCLEASE Z|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 QPGIFGPEG 10
Q IFGP G
Sbjct: 88 QLNIFGPHG 96


>sp|THS_PYRHO|THERMOSOME subunit|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GQPGIFGPEG 10
GQP + PEG
Sbjct: 6 GQPILILPEG 15


>sp|THS_PYRAB|THERMOSOME subunit|Pyrococcus abyssi (strain GE5 /

Query: 1 GQPGIFGPEG 10
GQP + PEG
Sbjct: 6 GQPILILPEG 15


>sp|CPGS_METFV|CYCLIC 2,3-diphosphoglycerate synthetase|Methanothermus fervidus (strain

Query: 1 GQPGIFGPE 9
G+P FGP+
Sbjct: 60 GKPVFFGPD 68


>sp|Y83A_METJA|PROBABLE pilin MJ0832.1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GQPGIFG 7
G PG+FG
Sbjct: 30 GYPGMFG 36


>sp|HFLX_HYPBU|GTPASE HflX|Hyperthermus butylicus (strain DSM 5456

Query: 3 PGIFGPEG 10
PG GP G
Sbjct: 146 PGFLGPGG 153


>sp|RNZ_NANEQ|RIBONUCLEASE Z|Nanoarchaeum equitans (strain Kin4-M)

Query: 5 IFGPEG 10
IFGP+G
Sbjct: 86 IFGPKG 91


>sp|MCH_METAR|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanocella arvoryzae (strain DSM 22066

Query: 3 PGIFGP 8
PGIF P
Sbjct: 280 PGIFAP 285


>sp|COBQ_METMJ|PROBABLE cobyric acid synthase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 GQPGIFGP 8
G PG+F P
Sbjct: 198 GDPGLFAP 205


>sp|ACDA1_METKA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanopyrus kandleri

Query: 1 GQPGIFGPEG 10
G P ++GP G
Sbjct: 622 GIPIVYGPAG 631


>sp|KDPB_HALSA|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Halobacterium salinarum (strain ATCC

Query: 3 PGIFGPEG 10
PG+FG G
Sbjct: 52 PGLFGATG 59


>sp|KDPB_HALS3|POTASSIUM-TRANSPORTING ATPase ATP-binding subunit|Halobacterium salinarum (strain ATCC

Query: 3 PGIFGPEG 10
PG+FG G
Sbjct: 52 PGLFGATG 59


>sp|DHE3_AERPE|GLUTAMATE dehydrogenase|Aeropyrum pernix (strain ATCC 700893

Query: 4 GIFGPEG 10
GI+ PEG
Sbjct: 245 GIYDPEG 251


>sp|CBIH_METTH|PROBABLE cobalt-factor III C(17)-methyltransferase|Methanothermobacter

Query: 1 GQPGIFG 7
G PG++G
Sbjct: 78 GDPGVYG 84


>sp|CYAS_METPE|CYSTEATE synthase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 GQPGIF 6
GQPGIF
Sbjct: 45 GQPGIF 50


>sp|PYLC_METBF|3-METHYL-D-ORNITHINE--L-LYSINE ligase|Methanosarcina barkeri (strain Fusaro /

Query: 4 GIFGPEG 10
IFGP+G
Sbjct: 228 AIFGPKG 234




70|SequenceR|355|346|PLGPEGQPGI

>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 3 GPEGQPG 9
GPEG PG
Sbjct: 440 GPEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 3 GPEGQPG 9
GPEG PG
Sbjct: 440 GPEGHPG 446


>sp|DNLI_CENSY|DNA ligase|Cenarchaeum symbiosum (strain A)

Query: 4 PEGQPGI 10
P+GQPG+
Sbjct: 583 PDGQPGV 589


>sp|ACDA2_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus

Query: 1 PLGPEGQPGI 10
P+GP PGI
Sbjct: 34 PMGPTPMPGI 43


>sp|HEM1_NATPD|GLUTAMYL-TRNA reductase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PLGPEGQP 8
P GPEG P
Sbjct: 426 PDGPEGVP 433


>sp|HIS7_METMJ|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 PLGPEGQPG 9
P+GP G PG
Sbjct: 123 PVGPGGIPG 131


>sp|ILVD_ARCFU|DIHYDROXY-ACID dehydratase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 LGPEGQPGI 10
+GP+G PG+
Sbjct: 429 MGPKGAPGM 437


>sp|TRM5B_PYRAB|TRNA (guanine(37)-N(1))-methyltransferase Trm5b|Pyrococcus abyssi

Query: 2 LGPEGQP 8
GPEG P
Sbjct: 279 FGPEGDP 285


>sp|PYRH_METAC|URIDYLATE kinase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 LGPEGQPGI 10
LGP+G P I
Sbjct: 83 LGPDGYPEI 91


>sp|PDXT_PYRAR|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Pyrobaculum arsenaticum (strain

Query: 2 LGPEGQP 8
+GP GQP
Sbjct: 99 VGPTGQP 105


>sp|DEOC_NATPD|DEOXYRIBOSE-PHOSPHATE aldolase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 LGPEGQPG 9
LGPE PG
Sbjct: 15 LGPETAPG 22


>sp|FEN_CALMQ|FLAP endonuclease 1|Caldivirga maquilingensis (strain ATCC 700844

Query: 4 PEGQPGI 10
PEG PGI
Sbjct: 244 PEGIPGI 250


>sp|Y2139_METS5|MEMO1 family protein Msed_2139|Metallosphaera sedula (strain ATCC 51363

Query: 1 PLGPEGQPGI 10
P+GP G P +
Sbjct: 30 PIGPGGIPSV 39


>sp|ILVD_METST|DIHYDROXY-ACID dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 432 GPKGGPGM 439


>sp|KATG_NATPD|CATALASE-PEROXIDASE pharaonis (strain ATCC 35678

Query: 1 PLGPEGQPGI 10
P GP+G+P +
Sbjct: 203 PEGPDGEPDL 212


>sp|MUTS2_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 2 LGPEGQP 8
+GP+G+P
Sbjct: 258 VGPDGEP 264


>sp|FTR_METBF|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 4 PEGQPGI 10
P+G+PG+
Sbjct: 66 PDGRPGV 72


>sp|ACDA1_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 PLGPEGQPGI 10
P+GP PG+
Sbjct: 41 PMGPSAWPGL 50


>sp|KATG_HALSA|CATALASE-PEROXIDASE salinarum (strain ATCC 700922

Query: 1 PLGPEGQPGI 10
P GP G+P +
Sbjct: 210 PEGPNGEPDL 219


>sp|KATG_HALS3|CATALASE-PEROXIDASE salinarum (strain ATCC 29341

Query: 1 PLGPEGQPGI 10
P GP G+P +
Sbjct: 210 PEGPNGEPDL 219


>sp|FEN_PYRCJ|FLAP endonuclease 1|Pyrobaculum calidifontis (strain DSM 21063

Query: 4 PEGQPGI 10
PEG PG+
Sbjct: 242 PEGVPGV 248


>sp|ILVD_PYRFU|DIHYDROXY-ACID dehydratase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 432 GPKGGPGM 439


>sp|ILVD_PYRAB|DIHYDROXY-ACID dehydratase|Pyrococcus abyssi (strain GE5 /

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 432 GPKGGPGM 439


>sp|FTR_METAC|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 PEGQPGI 10
P+G+PG+
Sbjct: 66 PDGRPGV 72


>sp|FUMC_HALSA|FUMARATE hydratase class II|Halobacterium salinarum (strain ATCC 700922

Query: 4 PEGQPG 9
PE QPG
Sbjct: 312 PENQPG 317


>sp|ILVD_SACS2|DIHYDROXY-ACID dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 438 GPKGAPGM 445


>sp|ILVD_SACI7|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 438 GPKGAPGM 445


>sp|ILVD_SACI6|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.4 /

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 438 GPKGAPGM 445


>sp|ILVD_SACI4|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.14.25 /

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 438 GPKGAPGM 445


>sp|ILVD_SACI3|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 438 GPKGAPGM 445


>sp|ILVD_SACI2|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 438 GPKGAPGM 445


>sp|ILVD_SACI1|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 438 GPKGAPGM 445


>sp|ILVD_METS3|DIHYDROXY-ACID dehydratase|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 432 GPKGGPGM 439


>sp|DNAK_METAC|CHAPERONE protein DnaK|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 LGPEGQP 8
+GP+G+P
Sbjct: 261 VGPDGEP 267


>sp|KATG_METAC|CATALASE-PEROXIDASE acetivorans (strain ATCC 35395

Query: 1 PLGPEGQP 8
P GP G P
Sbjct: 227 PEGPNGNP 234


>sp|ILVD_NATPD|DIHYDROXY-ACID dehydratase|Natronomonas pharaonis (strain ATCC 35678

Query: 3 GPEGQPGI 10
GPEG PG+
Sbjct: 466 GPEGGPGM 473


>sp|FTR_METBU|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 4 PEGQPGI 10
P+G+PG+
Sbjct: 66 PDGRPGV 72


>sp|GLPB_HALSA|PROBABLE anaerobic glycerol-3-phosphate dehydrogenase subunit|Halobacterium

Query: 1 PLGPEGQPGI 10
P+GP PG+
Sbjct: 253 PMGPPSLPGL 262


>sp|GLPB_HALS3|PROBABLE anaerobic glycerol-3-phosphate dehydrogenase subunit|Halobacterium

Query: 1 PLGPEGQPGI 10
P+GP PG+
Sbjct: 253 PMGPPSLPGL 262


>sp|ILVD_PICTO|DIHYDROXY-ACID dehydratase|Picrophilus torridus (strain ATCC 700027

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 433 GPKGGPGM 440


>sp|ILVD_METTH|DIHYDROXY-ACID dehydratase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 432 GPKGGPGM 439


>sp|ILVD_METBU|DIHYDROXY-ACID dehydratase|Methanococcoides burtonii (strain DSM 6242

Query: 3 GPEGQPGI 10
GP+G PG+
Sbjct: 435 GPKGGPGM 442


>sp|ILVD_AERPE|DIHYDROXY-ACID dehydratase|Aeropyrum pernix (strain ATCC 700893

Query: 2 LGPEGQPGI 10
+GP+G PG+
Sbjct: 434 VGPKGAPGM 442


>sp|KATG_METHJ|CATALASE-PEROXIDASE hungatei JF-1 (strain ATCC

Query: 1 PLGPEGQP 8
P GP+G P
Sbjct: 222 PEGPDGNP 229




71|SequenceR|360|351|TGPLGPLGPE

>sp|TRM1_HALWD|TRNA (guanine(26)-N(2))-dimethyltransferase|Haloquadratum walsbyi

Query: 1 TGPLGPLGPE 10
+GP PLGPE
Sbjct: 116 SGPESPLGPE 125


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 2 GPLGPLGP 9
G +GP+GP
Sbjct: 438 GGMGPMGP 445


Query: 2 GPLGPL 7
GP+GP+
Sbjct: 441 GPMGPM 446


>sp|KDGA_THETE|2-DEHYDRO-3-DEOXY-D-GLUCONATE/2-DEHYDRO-3-DEOXY-PHOSPHOGLUCONATE aldolase|Thermoproteus tenax

Query: 2 GPLGPLGPE 10
GP+ PL PE
Sbjct: 280 GPVYPLDPE 288


>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 2 GPLGPLG 8
GP+GP G
Sbjct: 217 GPMGPTG 223


Query: 1 TGPLGPLGP 9
+G GP+GP
Sbjct: 213 SGHKGPMGP 221


>sp|CDC69_HALSA|ORC1-TYPE DNA replication protein 9|Halobacterium salinarum (strain ATCC

Query: 2 GPLGP 6
GPLGP
Sbjct: 294 GPLGP 298


Query: 5 GPLGP 9
GPLGP
Sbjct: 294 GPLGP 298


>sp|COXX_KORCO|PROTOHEME IX farnesyltransferase|Korarchaeum cryptofilum (strain OPF8)

Query: 4 LGPLGP 9
+GPLGP
Sbjct: 230 MGPLGP 235


Query: 2 GPLGPL 7
GPLGP+
Sbjct: 231 GPLGPI 236


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 4 LGPLGP 9
LGP+GP
Sbjct: 39 LGPMGP 44


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 4 LGPLGP 9
LGP+GP
Sbjct: 39 LGPMGP 44


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 4 LGPLGP 9
LGP+GP
Sbjct: 39 LGPMGP 44


>sp|ACDA1_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 4 LGPLGP 9
LGP+GP
Sbjct: 39 LGPMGP 44


>sp|DAPA_NATPD|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 GPLGPLGPE 10
PL PL PE
Sbjct: 272 SPLNPLQPE 280


>sp|FBPAP_METJA|FRUCTOSE-1,6-BISPHOSPHATE aldolase/phosphatase|Methanocaldococcus jannaschii (strain ATCC

Query: 2 GPLGPLGPE 10
GPL P+G E
Sbjct: 275 GPLMPVGEE 283




72|SequenceR|365|356|GREGKTGPLG

>sp|DP2L_HALWD|DNA polymerase II large subunit|Haloquadratum walsbyi (strain DSM 16790

Query: 3 EGKTGPL 9
EGKT PL
Sbjct: 1939 EGKTNPL 1945


>sp|T2M2_AERPE|PUTATIVE type II restriction enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 1 GREGKTGPLG 10
G EGK GP+
Sbjct: 129 GVEGKVGPIA 138


>sp|HEM1_METTM|GLUTAMYL-TRNA reductase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 2 REGKTGPL 9
REG GPL
Sbjct: 109 REGTCGPL 116


>sp|Y1005_METJA|UNCHARACTERIZED protein MJ1005|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 EGKTGPLG 10
E K+GP G
Sbjct: 111 ESKSGPFG 118


>sp|DAPB_METKA|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanopyrus kandleri (strain AV19 /

Query: 1 GREGKTGP 8
GREG GP
Sbjct: 191 GREGNVGP 198


>sp|GCSPB_AERPE|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Aeropyrum pernix

Query: 2 REGKTGPL 9
R+GK GPL
Sbjct: 512 RQGKLGPL 519


>sp|TIAS_PYRNV|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Pyrobaculum neutrophilum

Query: 2 REGKTGP 8
REGKT P
Sbjct: 89 REGKTDP 95




73|SequenceR|370|361|PPGAEGREGK

>sp|CS3HD_METJA|CRISPR-ASSOCIATED endonuclease Cas3-HD|Methanocaldococcus jannaschii (strain ATCC

Query: 3 GAEGREGK 10
GAE REGK
Sbjct: 222 GAESREGK 229


>sp|DACZ_METJA|DIADENYLATE cyclase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GAEGREGK 10
G EGREG+
Sbjct: 173 GREGREGE 180


>sp|COFH_METHJ|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Methanospirillum hungatei JF-1 (strain

Query: 2 PGAEGRE 8
PGA GRE
Sbjct: 271 PGATGRE 277


>sp|IDSA_METJA|SHORT chain isoprenyl diphosphate synthase|Methanocaldococcus jannaschii

Query: 1 PPGAEGREGK 10
P G++ REGK
Sbjct: 232 PVGSDIREGK 241


>sp|CSG_HALJT|CELL surface glycoprotein|Haloarcula japonica (strain ATCC 49778

Query: 2 PGAEGREG 9
PG EG EG
Sbjct: 120 PGVEGTEG 127


>sp|RPO1N_METTW|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanothermobacter thermautotrophicus

Query: 1 PPGAEGRE 8
PP EGRE
Sbjct: 526 PPDREGRE 533


>sp|SYM_CALMQ|METHIONINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 PGAEGR 7
PGAEG+
Sbjct: 256 PGAEGK 261


>sp|CDCH_HALSA|PROTEIN CdcH|Halobacterium salinarum (strain ATCC 700922

Query: 2 PGAEGRE 8
PG EGRE
Sbjct: 631 PGIEGRE 637




74|SequenceR|375|366|REGRGPPGAE

>sp|GPN_PYRAB|GPN-LOOP GTPase PAB0955|Pyrococcus abyssi (strain GE5 /

Query: 1 REGRGPPGA 9
REG GP GA
Sbjct: 61 REGYGPNGA 69


>sp|CDC6C_HALMA|ORC1-TYPE DNA replication protein 3|Haloarcula marismortui (strain ATCC

Query: 3 GRGPPG 8
RGPPG
Sbjct: 60 ARGPPG 65


>sp|DNAG_THEVO|DNA primase DnaG|Thermoplasma volcanium (strain ATCC 51530

Query: 3 GRGPPGAE 10
R PPG E
Sbjct: 256 ARAPPGTE 263


>sp|KAD6_THEVO|PUTATIVE adenylate kinase|Thermoplasma volcanium (strain ATCC 51530

Query: 5 GPPGA 9
GPPGA
Sbjct: 9 GPPGA 13


>sp|HBCAL_NITMS|4-HYDROXYBUTYRATE--COA ligase [ADP-forming]|Nitrosopumilus maritimus (strain SCM1)

Query: 1 REGRGPPGAE 10
+ GR P GA+
Sbjct: 242 KSGRSPEGAK 251


>sp|DNAG_THEAC|DNA primase DnaG|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 GRGPPGAE 10
R PPG E
Sbjct: 256 ARAPPGTE 263


>sp|Y1033_PYRAR|UPF0210 protein Pars_1033|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 REGRGPPGAE 10
R G PPG E
Sbjct: 434 RPGTAPPGVE 443


>sp|DNAG_PICTO|DNA primase DnaG|Picrophilus torridus (strain ATCC 700027

Query: 3 GRGPPGAE 10
R PPG E
Sbjct: 242 ARAPPGTE 249


>sp|Y3581_PYRAE|UPF0210 protein PAE3581|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 REGRGPPGAE 10
R G PPG E
Sbjct: 434 RGGTAPPGVE 443


>sp|Y274_PYRHO|PUTATIVE GTPase PH0274|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 GPPGA 9
GPPGA
Sbjct: 54 GPPGA 58


>sp|ACYP_SACS2|ACYLPHOSPHATASE solfataricus (strain ATCC 35092

Query: 1 REGRGPPGAE 10
R +GPP AE
Sbjct: 71 RIKQGPPAAE 80


>sp|CDC66_HALSA|ORC1-TYPE DNA replication protein 6|Halobacterium salinarum (strain ATCC

Query: 3 GRGPPGA 9
RGPPG
Sbjct: 60 ARGPPGT 66




75|SequenceR|380|371|AGPEGREGRG

>sp|TRUB_THEVO|PROBABLE tRNA pseudouridine synthase B|Thermoplasma volcanium (strain ATCC

Query: 2 GPEGREGRG 10
GP+ R GRG
Sbjct: 316 GPDSRTGRG 324


>sp|SYV_PYRAB|VALINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 AGPEGRE 7
AGP+GR+
Sbjct: 530 AGPDGRK 536


>sp|DACZ_METJA|DIADENYLATE cyclase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GPEGREG 8
G EGREG
Sbjct: 173 GREGREG 179


>sp|SYV_PYRFU|VALINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 AGPEGRE 7
AGP+GR+
Sbjct: 530 AGPDGRK 536


>sp|SYV_PYRHO|VALINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 AGPEGRE 7
AGP+GR+
Sbjct: 530 AGPDGRK 536


>sp|Y1471_METMP|UNCHARACTERIZED protein MMP1471|Methanococcus maripaludis (strain DSM 14266

Query: 2 GPEGREGRG 10
GP R GRG
Sbjct: 78 GPLERSGRG 86


>sp|SYV_THEKO|VALINE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 AGPEGRE 7
AGP+GR+
Sbjct: 528 AGPDGRK 534


>sp|Y951_METJA|UNCHARACTERIZED protein MJ0951|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GPEGREGRG 10
GP R GRG
Sbjct: 85 GPLERSGRG 93


>sp|SYS2_METVS|TYPE-2 serine--tRNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 3 PEGREG 8
PEG+EG
Sbjct: 38 PEGKEG 43


>sp|AMTAB_PYRHO|PROBABLE threonylcarbamoyladenosine tRNA methylthiotransferase|Pyrococcus

Query: 3 PEGREG 8
PEGR+G
Sbjct: 399 PEGRKG 404


>sp|THSA_THEK8|CHAPERONIN subunit alpha|Thermococcus sp. (strain KS-8)

Query: 3 PEGREG 8
PEGR+G
Sbjct: 528 PEGRQG 533


>sp|TOP1_AERPE|DNA topoisomerase 1|Aeropyrum pernix (strain ATCC 700893

Query: 2 GPEGREGR 9
GP GRE R
Sbjct: 335 GPLGREAR 342




76|SequenceR|385|376|GKPGPAGPEG

>sp|RS3A_AERPE|SMALL ribosomal subunit protein eS1|Aeropyrum pernix (strain ATCC 700893

Query: 3 PGPAGPE 9
PGP GPE
Sbjct: 195 PGPNGPE 201


>sp|DTDA_HYPBU|D-AMINOACYL-TRNA deacylase|Hyperthermus butylicus (strain DSM 5456

Query: 1 GKPGPAGPEG 10
G PGP P G
Sbjct: 89 GNPGPEAPYG 98


>sp|KAE1B_THEVO|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 GKPGPAGPE 9
G P P GPE
Sbjct: 167 GIPFPGGPE 175


>sp|KAE1B_THEAC|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 GKPGPAGPE 9
G P P GPE
Sbjct: 167 GIPFPGGPE 175


>sp|Y213_METKA|UPF0282 protein MK0213|Methanopyrus kandleri (strain AV19 /

Query: 2 KPGPAGPEG 10
+P P GPEG
Sbjct: 154 QPLPHGPEG 162


>sp|Y444_METMA|PUTATIVE HTH-type transcriptional regulatory protein|Methanosarcina mazei

Query: 1 GKPGPAGPE 9
GKPG PE
Sbjct: 211 GKPGTLLPE 219


>sp|TRM1_THEKO|TRNA (guanine(26)-N(2))-dimethyltransferase|Thermococcus kodakarensis

Query: 2 KPGPAGP 8
KPG +GP
Sbjct: 268 KPGASGP 274


>sp|Y1242_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 2 KPGPAG 7
KPGP G
Sbjct: 362 KPGPMG 367


>sp|DP2L_CENSY|DNA polymerase II large subunit|Cenarchaeum symbiosum (strain A)

Query: 1 GKPGPAGPEG 10
G P AGPEG
Sbjct: 514 GVPHKAGPEG 523


>sp|CPGS_PYRHO|CYCLIC 2,3-diphosphoglycerate synthetase|Pyrococcus horikoshii (strain

Query: 1 GKPGPAGPE 9
G+ GP PE
Sbjct: 158 GRGGPESPE 166


>sp|Y609_METTH|UPF0179 protein MTH_609|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 GKPGPAGPEG 10
GKPG P G
Sbjct: 124 GKPGKQCPAG 133


>sp|IPK_THEAC|ISOPENTENYL phosphate kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 GKPGPAGP 8
G PGP P
Sbjct: 57 GLPGPKNP 64




77|SequenceR|390|381|SEGQKGKPGP

>sp|MBHLA_PYRFU|MEMBRANE-BOUND hydrogenase subunit alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 3 GQKGKPGP 10
GQKG+ GP
Sbjct: 329 GQKGRDGP 336


>sp|PINA_SULAC|HOLLIDAY junction branch migration ATPase|Sulfolobus acidocaldarius (strain

Query: 2 EGQKGKPG 9
+ +KGKPG
Sbjct: 149 KAKKGKPG 156


>sp|LIPA_SACS2|LIPOYL synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 KGKPGP 10
KGKP P
Sbjct: 68 KGKPSP 73


>sp|Y444_METMA|PUTATIVE HTH-type transcriptional regulatory protein|Methanosarcina mazei

Query: 2 EGQKGKPG 9
E KGKPG
Sbjct: 207 EEPKGKPG 214


>sp|PINA_SACI5|HOLLIDAY junction branch migration ATPase|Saccharolobus islandicus (strain

Query: 3 GQKGKPG 9
+KGKPG
Sbjct: 148 AKKGKPG 154


>sp|SYC_METAC|CYSTEINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 SEGQKGKP 8
SEG GKP
Sbjct: 246 SEGATGKP 253


>sp|SYC_METBF|CYSTEINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 SEGQKGKP 8
SEG GKP
Sbjct: 246 SEGATGKP 253


>sp|SYE_METM5|GLUTAMATE--TRNA ligase|Methanococcus maripaludis (strain C5 /

Query: 5 KGKPGP 10
KGKP P
Sbjct: 17 KGKPNP 22


>sp|SYE_METM7|GLUTAMATE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 5 KGKPGP 10
KGKP P
Sbjct: 17 KGKPNP 22


>sp|SYE_METM6|GLUTAMATE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 5 KGKPGP 10
KGKP P
Sbjct: 17 KGKPNP 22


>sp|SYE_METMP|GLUTAMATE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 5 KGKPGP 10
KGKP P
Sbjct: 17 KGKPNP 22


>sp|RTCA_THEKO|RNA 3'-terminal phosphate cyclase|Thermococcus kodakarensis (strain

Query: 2 EGQKGKPG 9
EG+ GKPG
Sbjct: 327 EGEVGKPG 334


>sp|PDXS_THEAC|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermoplasma acidophilum (strain

Query: 1 SEGQKGKPG 9
SEG +G PG
Sbjct: 311 SEGLQGMPG 319


>sp|RTCA_THESM|RNA 3'-terminal phosphate cyclase|Thermococcus sibiricus (strain DSM

Query: 2 EGQKGKPG 9
EG+ GKPG
Sbjct: 333 EGEIGKPG 340


>sp|T2M2_AERPE|PUTATIVE type II restriction enzyme|Aeropyrum pernix (strain ATCC 700893

Query: 2 EGQKGKPGP 10
EG +GK GP
Sbjct: 128 EGVEGKVGP 136


>sp|PDXS_THEVO|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermoplasma volcanium (strain

Query: 1 SEGQKGKPG 9
SEG +G PG
Sbjct: 311 SEGLQGMPG 319




78|SequenceR|395|386|PGRTGSEGQK

>sp|H669_METJA|PROBABLE ATP-dependent RNA helicase MJ0669|Methanocaldococcus jannaschii

Query: 2 GRTGSEGQK 10
GRTG G+K
Sbjct: 327 GRTGRAGKK 335


>sp|RL1_PYRCJ|LARGE ribosomal subunit protein uL1|Pyrobaculum calidifontis (strain DSM

Query: 3 RTGSEGQK 10
R G+EGQK
Sbjct: 167 RVGAEGQK 174


>sp|RL1_PYRNV|LARGE ribosomal subunit protein uL1|Pyrobaculum neutrophilum (strain DSM

Query: 3 RTGSEGQK 10
R G+EGQK
Sbjct: 167 RIGAEGQK 174


>sp|THII_METAC|PROBABLE tRNA sulfurtransferase|Methanosarcina acetivorans (strain ATCC

Query: 1 PGRTGSEGQ 9
P R G EGQ
Sbjct: 16 PSRQGFEGQ 24


>sp|RPO1C_THEVO|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermoplasma volcanium (strain ATCC

Query: 2 GRTGSEGQK 10
GRTG G+K
Sbjct: 440 GRTGISGRK 448


>sp|RPO1C_THEAC|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermoplasma acidophilum (strain ATCC

Query: 2 GRTGSEGQK 10
GRTG G+K
Sbjct: 440 GRTGISGRK 448


>sp|DHAS_METJA|ASPARTATE-SEMIALDEHYDE dehydrogenase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GRTGSEGQK 10
G TGS GQ+
Sbjct: 15 GATGSVGQR 23


>sp|SYI_HALMA|ISOLEUCINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 PGRTGSEGQ 9
PG T EGQ
Sbjct: 391 PGHTVREGQ 399


>sp|MUTS_METMA|DNA mismatch repair protein MutS|Methanosarcina mazei (strain ATCC

Query: 2 GRTGSEGQK 10
G+TG G+K
Sbjct: 138 GKTGKSGEK 146




79|SequenceR|400|391|GKSGKPGRTG

>sp|GCK_SULTO|GLYCERATE 2-kinase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 GKSGKPGRTG 10
GK+GK GR G
Sbjct: 304 GKAGKGGRNG 313


>sp|SYP_METLZ|PROLINE--TRNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 4 GKPGRTG 10
GKPG+T
Sbjct: 465 GKPGKTA 471


>sp|G3P_NATPD|GLYCERALDEHYDE-3-PHOSPHATE dehydrogenase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 KSGKPGRTG 10
+ G PG+TG
Sbjct: 169 RGGDPGQTG 177


>sp|ENDA_METTH|TRNA-SPLICING endonuclease|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 KSGKPGRT 9
+ G PGRT
Sbjct: 108 RGGAPGRT 115




80|SequenceR|405|396|KEGRDGKSGK

***** No hits found ******


81|SequenceR|410|401|AGSDGKEGRD

>sp|Y942_METJA|PROBABLE ATP-dependent helicase MJ0942|Methanocaldococcus jannaschii (strain

Query: 2 GSDGKEGRD 10
G DGKE ++
Sbjct: 498 GMDGKEAKE 506


>sp|CISY_PYRFU|CITRATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 DGKEGR 9
DGKEG+
Sbjct: 25 DGKEGK 30




82|SequenceR|415|406|GRPGQAGSDG

>sp|MUTS1_HALMA|DNA mismatch repair protein MutS|Haloarcula marismortui (strain ATCC

Query: 1 GRPGQAGSDG 10
G P AGSDG
Sbjct: 756 GEPRSAGSDG 765


>sp|PPSA_PYRHO|PROBABLE phosphoenolpyruvate synthase|Pyrococcus horikoshii (strain ATCC

Query: 4 GQAGSD 9
GQAGSD
Sbjct: 760 GQAGSD 765


>sp|PPSA_PYRAB|PROBABLE phosphoenolpyruvate synthase|Pyrococcus abyssi (strain GE5 /

Query: 4 GQAGSD 9
GQAGSD
Sbjct: 757 GQAGSD 762


>sp|PPSA_PYRFU|PHOSPHOENOLPYRUVATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 GQAGSD 9
GQAGSD
Sbjct: 757 GQAGSD 762


>sp|Y1659_ARCFU|UNCHARACTERIZED protein AF_1659|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 RPGQAGSDG 10
+PG+ G DG
Sbjct: 60 KPGEPGEDG 68


>sp|RS8E_META3|SMALL ribosomal subunit protein eS8|Methanococcus aeolicus (strain ATCC

Query: 2 RPGQAG 7
RPGQ+G
Sbjct: 114 RPGQSG 119


>sp|ASSY_HALWD|ARGININOSUCCINATE synthase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 PGQAGSDG 10
P QAG+DG
Sbjct: 160 PVQAGNDG 167




83|SequenceR|420|411|KQGPPGRPGQ

>sp|PAND_PYRIL|ASPARTATE 1-decarboxylase|Pyrobaculum islandicum (strain DSM 4184

Query: 5 PGRPGQ 10
PGRPG+
Sbjct: 60 PGRPGE 65


>sp|SYC_THEPD|CYSTEINE--TRNA ligase|Thermofilum pendens (strain DSM 2475

Query: 5 PGRPG 9
PGRPG
Sbjct: 197 PGRPG 201


>sp|SYC_THEAC|CYSTEINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 PGRPG 9
PGRPG
Sbjct: 198 PGRPG 202


>sp|Y444_METMA|PUTATIVE HTH-type transcriptional regulatory protein|Methanosarcina mazei

Query: 1 KQGPPGRPG 9
K+ P G+PG
Sbjct: 206 KEEPKGKPG 214


>sp|SYC_PYRCJ|CYSTEINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 5 PGRPG 9
PGRPG
Sbjct: 204 PGRPG 208


>sp|SYC_PYRAE|CYSTEINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 5 PGRPG 9
PGRPG
Sbjct: 206 PGRPG 210


>sp|SYC_PYRIL|CYSTEINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 5 PGRPG 9
PGRPG
Sbjct: 204 PGRPG 208


>sp|SYC_PYRAR|CYSTEINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 5 PGRPG 9
PGRPG
Sbjct: 204 PGRPG 208


>sp|SYC_PYRNV|CYSTEINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 5 PGRPG 9
PGRPG
Sbjct: 204 PGRPG 208


>sp|SYP_CALMQ|PROLINE--TRNA ligase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 QGPPGRP 8
+GP GRP
Sbjct: 3 RGPQGRP 9


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 KQGPPGRPG 9
+ GP G PG
Sbjct: 438 RNGPEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 KQGPPGRPG 9
+ GP G PG
Sbjct: 438 RNGPEGHPG 446


>sp|MDH_SACS2|MALATE dehydrogenase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 KQGPPGRPG 9
KQ PP PG
Sbjct: 104 KQLPPKNPG 112


>sp|ACYP_SACS2|ACYLPHOSPHATASE solfataricus (strain ATCC 35092

Query: 1 KQGPPG 6
KQGPP
Sbjct: 73 KQGPPA 78


>sp|FTR_METTH|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanothermobacter thermautotrophicus (strain

Query: 1 KQGPPGRPG 9
++ P GRPG
Sbjct: 63 EETPDGRPG 71


>sp|ILVD_METST|DIHYDROXY-ACID dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 QGPPGRPG 9
+GP G PG
Sbjct: 431 EGPKGGPG 438


>sp|FTR_METBF|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 2 QGPPGRPG 9
+ P GRPG
Sbjct: 64 ETPDGRPG 71


>sp|PUR5_THEGJ|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 KQGPPGRPGQ 10
++G PG P +
Sbjct: 32 RRGKPGEPAE 41


>sp|RPO2N_METJA|DNA-DIRECTED RNA polymerase subunit Rpo2N|Methanocaldococcus jannaschii (strain

Query: 5 PGRPGQ 10
PG PGQ
Sbjct: 214 PGMPGQ 219


>sp|FTR_METAC|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 QGPPGRPG 9
+ P GRPG
Sbjct: 64 ETPDGRPG 71


>sp|ILVD_METMP|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain DSM 14266

Query: 2 QGPPGRPG 9
+GP G PG
Sbjct: 430 EGPSGGPG 437


>sp|ILVD_PYRFU|DIHYDROXY-ACID dehydratase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 QGPPGRPG 9
+GP G PG
Sbjct: 431 EGPKGGPG 438


>sp|ILVD_PYRAB|DIHYDROXY-ACID dehydratase|Pyrococcus abyssi (strain GE5 /

Query: 2 QGPPGRPG 9
+GP G PG
Sbjct: 431 EGPKGGPG 438


>sp|ILVD_METM5|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C5 /

Query: 2 QGPPGRPG 9
+GP G PG
Sbjct: 430 EGPSGGPG 437


>sp|ILVD_METVS|DIHYDROXY-ACID dehydratase|Methanococcus vannielii (strain ATCC 35089

Query: 2 QGPPGRPG 9
+GP G PG
Sbjct: 430 EGPSGGPG 437


>sp|ILVD_METM7|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C7 /

Query: 2 QGPPGRPG 9
+GP G PG
Sbjct: 430 EGPSGGPG 437


>sp|ILVD_METM6|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C6 /

Query: 2 QGPPGRPG 9
+GP G PG
Sbjct: 430 EGPSGGPG 437


>sp|FTR_METBU|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanococcoides burtonii (strain DSM 6242

Query: 2 QGPPGRPG 9
+ P GRPG
Sbjct: 64 ETPDGRPG 71


>sp|FTR_METMA|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 QGPPGRPG 9
+ P GRPG
Sbjct: 64 ETPDGRPG 71


>sp|ILVD_METS3|DIHYDROXY-ACID dehydratase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 QGPPGRPG 9
+GP G PG
Sbjct: 431 EGPKGGPG 438




84|SequenceR|425|416|AGQDGKQGPP

>sp|Y658_METJA|UNCHARACTERIZED protein MJ0658|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GQDGKQGPP 10
+DGK+ PP
Sbjct: 283 ARDGKEVPP 291


>sp|NDK_STAMF|NUCLEOSIDE diphosphate kinase|Staphylothermus marinus (strain ATCC 43588

Query: 4 DGKQGPP 10
DG++ PP
Sbjct: 94 DGREAPP 100


>sp|METK_NATPD|S-ADENOSYLMETHIONINE synthase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 GQDGKQGP 9
G+DGKQ P
Sbjct: 148 GEDGKQVP 155


>sp|Y1506_METJA|UNCHARACTERIZED protein MJ1506|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GQDGKQ 7
G+DGKQ
Sbjct: 276 GEDGKQ 281


>sp|RL15E_METMP|LARGE ribosomal subunit protein eL15|Methanococcus maripaludis (strain

Query: 1 AGQDGKQ 7
GQDGKQ
Sbjct: 119 VGQDGKQ 125


>sp|RL15E_METM5|LARGE ribosomal subunit protein eL15|Methanococcus maripaludis (strain C5

Query: 1 AGQDGKQ 7
GQDGKQ
Sbjct: 119 VGQDGKQ 125




85|SequenceR|430|421|DIIETAGQDG

>sp|DPOL_THEFM|DNA polymerase|Thermococcus fumicolans

Query: 2 IIETAGQDG 10
I+E AG+DG
Sbjct: 685 ILEIAGRDG 693


>sp|SRP54_HALMA|SIGNAL recognition particle 54 kDa|Haloarcula marismortui (strain ATCC

Query: 2 IIETAGQDG 10
I++TAG+DG
Sbjct: 182 IVDTAGRDG 190


>sp|IF2P_PYRCJ|PROBABLE translation initiation factor IF-2|Pyrobaculum calidifontis (strain

Query: 1 DIIETAGQDG 10
D+I TAG DG
Sbjct: 266 DVIVTAGLDG 275


>sp|HMDX_METJA|H(2)-FORMING methylenetetrahydromethanopterin dehydrogenase-related protein

Query: 1 DIIETAGQDG 10
IIET+G +G
Sbjct: 246 SIIETSGMEG 255


>sp|IF2P_PYRIL|PROBABLE translation initiation factor IF-2|Pyrobaculum islandicum (strain

Query: 1 DIIETAGQDG 10
D+I TAG DG
Sbjct: 264 DVIITAGIDG 273


>sp|DPOL_PYRSD|DNA polymerase|Pyrococcus sp. (strain GB-D)

Query: 1 DIIETAGQD 9
D++E G+D
Sbjct: 597 DLVEATGED 605


>sp|TRUB_METTH|PROBABLE tRNA pseudouridine synthase B|Methanothermobacter

Query: 1 DIIETAGQD 9
DI+E GQD
Sbjct: 149 DILEVDGQD 157




86|SequenceR|435|426|LNGNYDIIET

>sp|FAU1_SACI6|PROBABLE ribonuclease FAU-1|Saccharolobus islandicus (strain M.16.4 /

Query: 2 NGNYDIIE 9
NG+YDI+E
Sbjct: 323 NGDYDIVE 330


>sp|FAU1_SACI4|PROBABLE ribonuclease FAU-1|Saccharolobus islandicus (strain M.14.25 /

Query: 2 NGNYDIIE 9
NG+YDI+E
Sbjct: 323 NGDYDIVE 330


>sp|FAU1_SACI3|PROBABLE ribonuclease FAU-1|Saccharolobus islandicus (strain M.16.27)

Query: 2 NGNYDIIE 9
NG+YDI+E
Sbjct: 323 NGDYDIVE 330


>sp|FAU1_SACI7|PROBABLE ribonuclease FAU-1|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 NGNYDIIE 9
NG+YDI+E
Sbjct: 323 NGDYDIVE 330


>sp|FAU1_SACI2|PROBABLE ribonuclease FAU-1|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 NGNYDIIE 9
NG+YDI+E
Sbjct: 323 NGDYDIVE 330


>sp|ACDE1_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Archaeoglobus

Query: 2 NGNYDII 8
NGNYD +
Sbjct: 117 NGNYDTV 123


>sp|ACDE2_METMA|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Methanosarcina mazei

Query: 2 NGNYDII 8
NGNYD++
Sbjct: 105 NGNYDMV 111


>sp|RL10E_SULTO|LARGE ribosomal subunit protein uL16|Sulfurisphaera tokodaii (strain

Query: 1 LNGNYD 6
+NGNYD
Sbjct: 39 VNGNYD 44


>sp|ACDE1_METBF|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Methanosarcina

Query: 2 NGNYDII 8
NGNYD++
Sbjct: 105 NGNYDMV 111


>sp|DAPA_METST|4-HYDROXY-TETRAHYDRODIPICOLINATE synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 LNGNYD 6
LNGNYD
Sbjct: 228 LNGNYD 233


>sp|Y1441_METJA|UNCHARACTERIZED protein MJ1441|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 NGNYDIIET 10
GNYDI+ T
Sbjct: 798 RGNYDILPT 806


>sp|FAU1_NATPD|PROBABLE ribonuclease FAU-1|Natronomonas pharaonis (strain ATCC 35678

Query: 1 LNGNYDIIE 9
L G YDI++
Sbjct: 17 LGGEYDIVQ 25


>sp|TRPC_SULAC|INDOLE-3-GLYCEROL phosphate synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 LNGNYDII 8
L GNYD I
Sbjct: 171 LRGNYDFI 178


>sp|PURQ_PYRAE|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 NGNYDII 8
NG+YD++
Sbjct: 12 NGDYDVL 18


>sp|Y1501_ARCFU|UNCHARACTERIZED protein AF_1501|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LNGNYDII 8
L+G+YD+I
Sbjct: 157 LDGSYDVI 164


>sp|ACDE2_METTE|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Methanosarcina

Query: 2 NGNYDII 8
NGNYD I
Sbjct: 105 NGNYDTI 111


>sp|TRPA_METBF|TRYPTOPHAN synthase alpha chain|Methanosarcina barkeri (strain Fusaro /

Query: 1 LNGNYDIIE 9
+NG DIIE
Sbjct: 43 VNGGADIIE 51


>sp|TRPA_METAC|TRYPTOPHAN synthase alpha chain|Methanosarcina acetivorans (strain ATCC

Query: 1 LNGNYDIIE 9
+NG DIIE
Sbjct: 52 VNGGADIIE 60


>sp|GLCD1_VULM7|GLUCOSE 1-dehydrogenase 1|Vulcanisaeta moutnovskia (strain 768-28)

Query: 1 LNGNYDII 8
+NG++DI+
Sbjct: 232 INGDFDIV 239


>sp|Y614_PYRHO|UNCHARACTERIZED protein PH0614|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LNGNYDII 8
+N NYD+I
Sbjct: 24 INDNYDLI 31


>sp|ACDE1_METAC|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Methanosarcina

Query: 2 NGNYDII 8
NGNYD +
Sbjct: 105 NGNYDTV 111


>sp|MTMB3_METBF|MONOMETHYLAMINE methyltransferase MtmB3|Methanosarcina barkeri (strain Fusaro /

Query: 2 NGNYDII 8
NGN DII
Sbjct: 250 NGNSDII 256


>sp|G1PDH_THEAC|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Thermoplasma acidophilum (strain ATCC

Query: 2 NGNYDIIE 9
N NYD +E
Sbjct: 72 NANYDTLE 79


>sp|APE1_SULTO|PROBABLE aminopeptidase 1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 LNGNYDIIE 9
L GN+D+I+
Sbjct: 713 LQGNFDMIK 721


>sp|FAU1_SULTO|PROBABLE ribonuclease FAU-1|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 GNYDIIE 9
G+YDI+E
Sbjct: 319 GDYDIVE 325


>sp|GCSPB_HALSA|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Halobacterium

Query: 3 GNYDIIE 9
G YD+IE
Sbjct: 180 GGYDVIE 186


>sp|GPMI_METMA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LNGNYDII 8
L+G YD+I
Sbjct: 395 LSGKYDVI 402


>sp|RFCL_METAR|REPLICATION factor C large subunit|Methanocella arvoryzae (strain DSM 22066

Query: 1 LNGNYD 6
L+GNYD
Sbjct: 115 LHGNYD 120


>sp|FAU1_SACS2|PROBABLE ribonuclease FAU-1|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 GNYDIIE 9
G+YDI+E
Sbjct: 324 GDYDIVE 330


>sp|Y1119_ARCFU|UNCHARACTERIZED protein AF_1119|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LNGNYDIIE 9
+ GN D+IE
Sbjct: 27 MKGNIDVIE 35


>sp|SYT_METM6|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C6 /

Query: 1 LNGNYDII 8
L+GNY+++
Sbjct: 102 LSGNYEVL 109


>sp|NNR_PYRAE|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Pyrobaculum aerophilum (strain

Query: 1 LNGNYDII 8
L G YD+I
Sbjct: 407 LKGRYDVI 414


>sp|SYT_METM7|THREONINE--TRNA ligase|Methanococcus maripaludis (strain C7 /

Query: 1 LNGNYDII 8
L+GNY+++
Sbjct: 102 LSGNYEVL 109


>sp|PUR7_ARCFU|PUTATIVE phosphoribosylaminoimidazole-succinocarboxamide

Query: 2 NGNYDIIET 10
NG+Y I +T
Sbjct: 101 NGDYSIFKT 109


>sp|RGYR_PYRFU|REVERSE gyrase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 NGNYDIIET 10
+GN+DI+ T
Sbjct: 181 SGNFDILVT 189


>sp|NURA_PYRFU|DNA double-strand break repair nuclease|Pyrococcus furiosus (strain

Query: 2 NGNYD 6
NGNYD
Sbjct: 183 NGNYD 187


>sp|TRM14_ARCFU|TRNA (guanine(6)-N2)-methyltransferase|Archaeoglobus fulgidus (strain

Query: 1 LNGNYDIIET 10
+ G YD+I T
Sbjct: 307 MTGEYDVIIT 316


>sp|PURA_THEAC|ADENYLOSUCCINATE synthetase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 LNGNYDII 8
L+G+YD++
Sbjct: 31 LSGSYDVV 38


>sp|NNR_METJA|BIFUNCTIONAL NAD(P)H-hydrate repair enzyme Nnr|Methanocaldococcus jannaschii

Query: 1 LNGNYDII 8
L G YDII
Sbjct: 403 LKGKYDII 410


>sp|LHRC_SULAC|ATP-DEPENDENT helicase Lhr-Core|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 NGNYDIIET 10
NG+Y+II+
Sbjct: 228 NGDYEIIDA 236


>sp|CATA_METBF|CATALASE barkeri (strain Fusaro /

Query: 2 NGNYDII 8
+GNYD++
Sbjct: 123 DGNYDLV 129


>sp|CARB_METLZ|CARBAMOYL phosphate synthase large chain|Methanocorpusculum labreanum (strain

Query: 2 NGNYDIIE 9
NG+Y +IE
Sbjct: 287 NGDYRVIE 294


>sp|AATA_METAC|A-TYPE ATP synthase subunit A|Methanosarcina acetivorans (strain ATCC

Query: 2 NGNYDIIET 10
+GN+ ++ET
Sbjct: 163 SGNFTVLET 171


>sp|DHE4_PYRCJ|NADP(+)-DEPENDENT glutamate dehydrogenase|Pyrobaculum calidifontis (strain DSM

Query: 2 NGNYDIIE 9
NG+Y++ E
Sbjct: 49 NGSYEVFE 56


>sp|Y1518_METJA|UNCHARACTERIZED protein MJ1518|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 YDIIET 10
YDIIET
Sbjct: 288 YDIIET 293


>sp|RGYR_PYRHO|REVERSE gyrase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 NGNYDIIET 10
NG++DI+ T
Sbjct: 181 NGDFDILIT 189


>sp|ACDE2_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit epsilon|Archaeoglobus

Query: 3 GNYDII 8
GNYD++
Sbjct: 108 GNYDLV 113


>sp|FAU1_SULAC|PROBABLE ribonuclease FAU-1|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 NGNYDIIE 9
+G+YD++E
Sbjct: 319 DGDYDLVE 326


>sp|PYRH_PYRAR|URIDYLATE kinase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 LNGNYDIIET 10
L G Y++I+T
Sbjct: 169 LPGGYELIDT 178




87|SequenceR|440|431|QLAEHLNGNY

>sp|KAE1B_THEVO|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 QLAEHLNGNY 10
Q+ HLNG Y
Sbjct: 135 QVIAHLNGRY 144


>sp|LHRC_SULAC|ATP-DEPENDENT helicase Lhr-Core|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 2 LAEHLNGNY 10
+AE+L GNY
Sbjct: 462 VAEYLAGNY 470


>sp|Y079_METJA|UNCHARACTERIZED protein MJ0079|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LAEHLNGNY 10
+A H+N NY
Sbjct: 56 IASHINANY 64


>sp|MTBA_METMA|METHYLCOBAMIDE:COM methyltransferase MtbA|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 LAEHLNGN 9
LA+H+NG+
Sbjct: 151 LAQHINGD 158


>sp|MTBA_METBA|METHYLCOBAMIDE:COM methyltransferase MtbA|Methanosarcina barkeri

Query: 2 LAEHLNGN 9
LA+H+NG+
Sbjct: 151 LAQHINGD 158


>sp|MTBA_METAC|METHYLCOBAMIDE:COM methyltransferase MtbA|Methanosarcina acetivorans (strain ATCC

Query: 2 LAEHLNGN 9
LA+H+NG+
Sbjct: 151 LAQHINGD 158


>sp|Y812_METJA|UNCHARACTERIZED protein MJ0812|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 LAEHLNGNY 10
+A H+N NY
Sbjct: 50 IASHINANY 58


>sp|KAE1B_PICTO|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 QLAEHLNGNY 10
Q+ HLNG Y
Sbjct: 135 QVIAHLNGRY 144


>sp|NTPPA_PYRFU|DTTP/UTP pyrophosphatase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LAEHLNGNY 10
L EH+ G+Y
Sbjct: 157 LVEHIEGDY 165


>sp|Y257_ARCFU|UNCHARACTERIZED protein AF_0257|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 AEHLNGNY 10
AEHL G+Y
Sbjct: 23 AEHLKGSY 30


>sp|SYI_HALWD|ISOLEUCINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 QLAEHLNGN 9
Q+ +HLNG+
Sbjct: 779 QMYQHLNGS 787


>sp|SYDND_METAC|ASPARTATE--TRNA(ASP/ASN) ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 LAEHLNGNY 10
L EH GNY
Sbjct: 314 LGEHTVGNY 322


>sp|AAT_SULTO|ASPARTATE aminotransferase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 QLAEHLNGNY 10
++AEHL+ Y
Sbjct: 79 KIAEHLSSKY 88


>sp|SYT_NATPD|THREONINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 LAEHLNGNY 10
L EH +GN+
Sbjct: 524 LIEHFDGNF 532


>sp|KAE1B_THEAC|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 QLAEHLNGNY 10
Q+ H+NG Y
Sbjct: 135 QVIAHVNGRY 144


>sp|SYDND_METBF|ASPARTATE--TRNA(ASP/ASN) ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 LAEHLNGNY 10
EH+ GNY
Sbjct: 314 FGEHIVGNY 322


>sp|PSA_HALWD|PROTEASOME subunit alpha|Haloquadratum walsbyi (strain DSM 16790

Query: 2 LAEHLNGNY 10
L EHL NY
Sbjct: 174 LQEHLEENY 182


>sp|SYT_HALWD|THREONINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 LAEHLNGNY 10
L EH NG +
Sbjct: 524 LIEHFNGKF 532


>sp|SYT_HALMA|THREONINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 2 LAEHLNGNY 10
L EH NG +
Sbjct: 524 LTEHYNGKF 532


>sp|DNLI1_METAC|DNA ligase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 LAEHLNGN 9
L EH+NG+
Sbjct: 365 LEEHVNGS 372


>sp|G1PDH_STAMF|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Staphylothermus marinus (strain ATCC 43588

Query: 1 QLAEHLNGNY 10
QLA L G Y
Sbjct: 187 QLAHRLKGEY 196


>sp|Y1403_METJA|UNCHARACTERIZED protein MJ1403|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 HLNGNY 10
HLN NY
Sbjct: 186 HLNDNY 191


>sp|SYT_HALSA|THREONINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 LAEHLNGNY 10
L EH NG +
Sbjct: 524 LIEHYNGRF 532


>sp|SYT_HALS3|THREONINE--TRNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 2 LAEHLNGNY 10
L EH NG +
Sbjct: 524 LIEHYNGRF 532




88|SequenceR|445|436|LTTIRQLAEH

>sp|PGK_METKA|PHOSPHOGLYCERATE kinase|Methanopyrus kandleri (strain AV19 /

Query: 1 LTTIRQLAEH 10
L TI++L EH
Sbjct: 43 LGTIKELMEH 52


>sp|SYFA_PYRCJ|PHENYLALANINE--TRNA ligase alpha subunit|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 TTIRQLAE 9
TTIR LAE
Sbjct: 317 TTIRALAE 324


>sp|GLPA2_HALVD|ANAEROBIC glycerol-3-phosphate dehydrogenase subunit A2|Haloferax volcanii

Query: 1 LTTIRQLAE 9
LTT R++AE
Sbjct: 357 LTTYREMAE 365


>sp|PGK_THESM|PHOSPHOGLYCERATE kinase|Thermococcus sibiricus (strain DSM 12597

Query: 1 LTTIRQLAEH 10
L TIR L EH
Sbjct: 39 LHTIRYLLEH 48


>sp|SYFA_PYRAE|PHENYLALANINE--TRNA ligase alpha subunit|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 TTIRQLAE 9
TTIR LAE
Sbjct: 318 TTIRALAE 325


>sp|HISX_THEKO|HISTIDINOL dehydrogenase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 LTTIRQLAEH 10
LTT R+LA++
Sbjct: 239 LTTSRELADY 248


>sp|GSA_HALMA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Haloarcula marismortui (strain ATCC 43049

Query: 1 LTTIRQLAEH 10
L T+R AEH
Sbjct: 307 LETLRYAAEH 316




89|SequenceR|450|441|PGTVTLTTIR

>sp|DPCKG_SULAC|GTP-DEPENDENT dephospho-CoA kinase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PGTVTLTTIR 10
PG + L+TIR
Sbjct: 83 PGLIRLSTIR 92


>sp|MFNB_METVS|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus vannielii (strain ATCC 35089

Query: 1 PGTVTLTTI 9
PGTVTL +
Sbjct: 66 PGTVTLAAL 74


>sp|DAPAT_METMP|LL-DIAMINOPIMELATE aminotransferase|Methanococcus maripaludis (strain DSM 14266

Query: 1 PGTVTLTTI 9
PG VTL T+
Sbjct: 129 PGDVTLMTV 137


>sp|MFNB_METM7|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus maripaludis (strain C7 /

Query: 1 PGTVTLTTI 9
PGTVTL +
Sbjct: 66 PGTVTLAAL 74


>sp|MFNB_METM5|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus maripaludis (strain C5 /

Query: 1 PGTVTLTTI 9
PGTVTL +
Sbjct: 66 PGTVTLAAL 74


>sp|MFNB_METMP|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 PGTVTLTTI 9
PGTVTL +
Sbjct: 66 PGTVTLAAL 74


>sp|MFNB_METM6|(5-FORMYLFURAN-3-YL)METHYL phosphate synthase|Methanococcus maripaludis (strain C6 /

Query: 1 PGTVTLTTI 9
PGTVTL +
Sbjct: 66 PGTVTLAAL 74


>sp|HISX_METJA|HISTIDINOL dehydrogenase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PGTVTLTTI 9
P TV +TTI
Sbjct: 140 PSTVLMTTI 148


>sp|AROC_METST|CHORISMATE synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 PGTVTLTTIR 10
PGT LTT R
Sbjct: 50 PGTSNLTTSR 59


>sp|CBID_METMJ|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 PGTVTLTTIR 10
PG V LTT R
Sbjct: 226 PGAVVLTTGR 235




90|SequenceR|455|446|GPPGPPGTVT

>sp|TRMY_PYRHO|TRNA (pseudouridine(54)-N(1))-methyltransferase|Pyrococcus horikoshii

Query: 1 GPPGPPGTV 9
GPP PP T+
Sbjct: 58 GPPSPPKTI 66


>sp|TRMY_METM5|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanococcus

Query: 1 GPPGPP 6
GPP PP
Sbjct: 58 GPPNPP 63


>sp|CDC6Z_METTF|ORC1-TYPE DNA replication protein|Methanothermobacter thermautotrophicus

Query: 1 GPPGPPGTVT 10
GPPG TVT
Sbjct: 54 GPPGSGKTVT 63


>sp|CDC6V_METTF|ORC1-TYPE DNA replication protein|Methanothermobacter thermautotrophicus

Query: 1 GPPGPPGTVT 10
GPPG TVT
Sbjct: 54 GPPGSGKTVT 63


>sp|RNZ_PICTO|RIBONUCLEASE Z|Picrophilus torridus (strain ATCC 700027

Query: 4 GPPGTV 9
GPPGT+
Sbjct: 93 GPPGTI 98


>sp|TRMY_PYRFU|TRNA (pseudouridine(54)-N(1))-methyltransferase|Pyrococcus furiosus

Query: 1 GPPGPPGTV 9
GPP PP T+
Sbjct: 58 GPPDPPKTI 66


>sp|PTH_METBF|PEPTIDYL-TRNA hydrolase|Methanosarcina barkeri (strain Fusaro /

Query: 5 PPGTVT 10
PPGTVT
Sbjct: 88 PPGTVT 93


>sp|PTH_PYRAB|PEPTIDYL-TRNA hydrolase|Pyrococcus abyssi (strain GE5 /

Query: 5 PPGTVT 10
PPGT+T
Sbjct: 91 PPGTIT 96


>sp|PTH_PYRHO|PEPTIDYL-TRNA hydrolase|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 PPGTVT 10
PPGTVT
Sbjct: 94 PPGTVT 99


>sp|Y1441_METJA|UNCHARACTERIZED protein MJ1441|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PGPPGTVT 10
PGP G +T
Sbjct: 790 PGPSGLIT 797


>sp|PTH_METMA|PEPTIDYL-TRNA hydrolase|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 PPGTVT 10
PPGTVT
Sbjct: 88 PPGTVT 93


>sp|PTH_ARCFU|PEPTIDYL-TRNA hydrolase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 PPGTVT 10
PPGT+T
Sbjct: 87 PPGTIT 92


>sp|DNAK_HALMA|CHAPERONE protein DnaK|Haloarcula marismortui (strain ATCC 43049

Query: 2 PPGPPGT 8
PP P GT
Sbjct: 436 PPAPAGT 442


>sp|Y104_METJA|UNCHARACTERIZED ATP-dependent helicase MJ0104|Methanocaldococcus jannaschii (strain

Query: 4 GPPGT 8
GPPGT
Sbjct: 207 GPPGT 211


>sp|RFCS_THEPD|REPLICATION factor C small subunit|Thermofilum pendens (strain DSM 2475

Query: 4 GPPGT 8
GPPGT
Sbjct: 44 GPPGT 48


>sp|RFCS_SULTO|REPLICATION factor C small subunit|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 GPPGT 8
GPPGT
Sbjct: 47 GPPGT 51


>sp|RFCS_SULAC|REPLICATION factor C small subunit|Sulfolobus acidocaldarius (strain ATCC

Query: 4 GPPGT 8
GPPGT
Sbjct: 45 GPPGT 49


>sp|RFCS_STAMF|REPLICATION factor C small subunit|Staphylothermus marinus (strain ATCC 43588

Query: 4 GPPGT 8
GPPGT
Sbjct: 51 GPPGT 55


>sp|RFCS_SACS2|REPLICATION factor C small subunit|Saccharolobus solfataricus (strain ATCC

Query: 4 GPPGT 8
GPPGT
Sbjct: 48 GPPGT 52


>sp|RFCS_NANEQ|REPLICATION factor C small subunit|Nanoarchaeum equitans (strain Kin4-M)

Query: 4 GPPGT 8
GPPGT
Sbjct: 42 GPPGT 46


>sp|RFCS_METKA|REPLICATION factor C small subunit|Methanopyrus kandleri (strain AV19 /

Query: 4 GPPGT 8
GPPGT
Sbjct: 51 GPPGT 55


>sp|RFCS_ARCFU|REPLICATION factor C small subunit|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 GPPGT 8
GPPGT
Sbjct: 45 GPPGT 49


>sp|RFCS_AERPE|REPLICATION factor C small subunit|Aeropyrum pernix (strain ATCC 700893

Query: 4 GPPGT 8
GPPGT
Sbjct: 47 GPPGT 51


>sp|RFCL_METTH|REPLICATION factor C large subunit|Methanothermobacter thermautotrophicus

Query: 4 GPPGT 8
GPPGT
Sbjct: 45 GPPGT 49


>sp|PAN1_HALSA|PROTEASOME-ACTIVATING nucleotidase 1|Halobacterium salinarum (strain ATCC 700922

Query: 4 GPPGT 8
GPPGT
Sbjct: 189 GPPGT 193


>sp|CDC6C_HALMA|ORC1-TYPE DNA replication protein 3|Haloarcula marismortui (strain ATCC

Query: 4 GPPGT 8
GPPGT
Sbjct: 62 GPPGT 66


>sp|CDC66_HALSA|ORC1-TYPE DNA replication protein 6|Halobacterium salinarum (strain ATCC

Query: 4 GPPGT 8
GPPGT
Sbjct: 62 GPPGT 66


>sp|CDC62_METMA|ORC1-TYPE DNA replication protein 2|Methanosarcina mazei (strain ATCC

Query: 4 GPPGT 8
GPPGT
Sbjct: 59 GPPGT 63


>sp|CDC62_METAC|ORC1-TYPE DNA replication protein 2|Methanosarcina acetivorans (strain ATCC

Query: 4 GPPGT 8
GPPGT
Sbjct: 59 GPPGT 63


>sp|DNAK_NATPD|CHAPERONE protein DnaK|Natronomonas pharaonis (strain ATCC 35678

Query: 2 PPGPPGT 8
PP P GT
Sbjct: 437 PPAPAGT 443


>sp|DNAK_HALLT|CHAPERONE protein DnaK|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 PPGPPGT 8
PP P GT
Sbjct: 437 PPAPAGT 443


>sp|TRMY_PYRAB|TRNA (pseudouridine(54)-N(1))-methyltransferase|Pyrococcus abyssi

Query: 1 GPPGPPGTV 9
GPP PP ++
Sbjct: 58 GPPDPPKSL 66


>sp|DNAK_HALSA|CHAPERONE protein DnaK|Halobacterium salinarum (strain ATCC 700922

Query: 2 PPGPPGT 8
PP P GT
Sbjct: 436 PPAPAGT 442


>sp|DNAK_HALS3|CHAPERONE protein DnaK|Halobacterium salinarum (strain ATCC 29341

Query: 2 PPGPPGT 8
PP P GT
Sbjct: 436 PPAPAGT 442


>sp|DNAK_HALWD|CHAPERONE protein DnaK|Haloquadratum walsbyi (strain DSM 16790

Query: 2 PPGPPGT 8
PP P GT
Sbjct: 437 PPAPAGT 443


>sp|PAN_METPE|PROTEASOME-ACTIVATING nucleotidase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 4 GPPGT 8
GPPGT
Sbjct: 194 GPPGT 198


>sp|DNAK_HALMT|CHAPERONE protein DnaK|Haloferax mediterranei (strain ATCC 33500

Query: 2 PPGPPGT 8
PP P GT
Sbjct: 437 PPAPAGT 443


>sp|PTH_PYRFU|PEPTIDYL-TRNA hydrolase|Pyrococcus furiosus (strain ATCC 43587

Query: 5 PPGTVT 10
PPGT+T
Sbjct: 92 PPGTIT 97


>sp|RFCL_METKA|REPLICATION factor C large subunit|Methanopyrus kandleri (strain AV19 /

Query: 4 GPPGT 8
GPPGT
Sbjct: 48 GPPGT 52


>sp|DPCKG_METTH|GTP-DEPENDENT dephospho-CoA kinase|Methanothermobacter thermautotrophicus

Query: 5 PPGTVT 10
PPGTVT
Sbjct: 81 PPGTVT 86


>sp|TRMY_THEON|TRNA (pseudouridine(54)-N(1))-methyltransferase|Thermococcus

Query: 1 GPPGPPGTV 9
GPP PP +
Sbjct: 58 GPPNPPKAI 66


>sp|PTH_CALMQ|PEPTIDYL-TRNA hydrolase|Caldivirga maquilingensis (strain ATCC 700844

Query: 5 PPGTVT 10
PPGTVT
Sbjct: 91 PPGTVT 96


>sp|PTH_THEKO|PEPTIDYL-TRNA hydrolase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 5 PPGTVT 10
PPGTVT
Sbjct: 91 PPGTVT 96


>sp|PTH_THEON|PEPTIDYL-TRNA hydrolase|Thermococcus onnurineus (strain NA1)

Query: 5 PPGTVT 10
PPGT+T
Sbjct: 91 PPGTIT 96


>sp|Y444_METMA|PUTATIVE HTH-type transcriptional regulatory protein|Methanosarcina mazei

Query: 2 PPGPPGTV 9
P G PGT+
Sbjct: 209 PKGKPGTL 216


>sp|LON_METST|LON protease|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 GPPGT 8
GPPGT
Sbjct: 388 GPPGT 392


>sp|TRMY_METKA|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanopyrus kandleri

Query: 1 GPPGPPGTVT 10
GP PP T+T
Sbjct: 58 GPDDPPKTIT 67


>sp|Y520_METJA|PUTATIVE NADH-ubiquinone oxidoreductase MJ0520|Methanocaldococcus

Query: 1 GPPGPP 6
G PGPP
Sbjct: 38 GRPGPP 43


>sp|PTH_THESM|PEPTIDYL-TRNA hydrolase|Thermococcus sibiricus (strain DSM 12597

Query: 5 PPGTVT 10
PPGT+T
Sbjct: 91 PPGTIT 96


>sp|Y1156_METJA|CELL division cycle protein 48|Methanocaldococcus jannaschii (strain

Query: 4 GPPGT 8
GPPGT
Sbjct: 220 GPPGT 224


>sp|PAN2_HALSA|PROTEASOME-ACTIVATING nucleotidase 2|Halobacterium salinarum (strain ATCC 700922

Query: 4 GPPGT 8
GPPGT
Sbjct: 193 GPPGT 197


>sp|TRMY_THEGJ|TRNA (pseudouridine(54)-N(1))-methyltransferase|Thermococcus

Query: 1 GPPGPPGTV 9
GPP PP +
Sbjct: 58 GPPEPPKAI 66


>sp|NDK_STAMF|NUCLEOSIDE diphosphate kinase|Staphylothermus marinus (strain ATCC 43588

Query: 1 GPPGPPGTV 9
G PPGT+
Sbjct: 95 GREAPPGTI 103


>sp|RS2_NANEQ|SMALL ribosomal subunit protein uS2|Nanoarchaeum equitans (strain Kin4-M)

Query: 5 PPGTVT 10
PPGT+T
Sbjct: 95 PPGTLT 100


>sp|DPCKG_PYRFU|GTP-DEPENDENT dephospho-CoA kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 5 PPGTVT 10
PPGT+T
Sbjct: 91 PPGTIT 96


>sp|CREN7_PYRAR|CHROMATIN protein Cren7|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 PPGPPGTVT 10
PPG PG V
Sbjct: 31 PPGKPGVVV 39


>sp|NDK_HYPBU|NUCLEOSIDE diphosphate kinase|Hyperthermus butylicus (strain DSM 5456

Query: 1 GPPGPPGTV 9
G PPGT+
Sbjct: 95 GRKAPPGTI 103


>sp|TRMY_THEKO|TRNA (pseudouridine(54)-N(1))-methyltransferase|Thermococcus

Query: 1 GPPGPPGTV 9
G P PP T+
Sbjct: 58 GRPNPPKTI 66


>sp|CREN7_PYRNV|CHROMATIN protein Cren7|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 PPGPPGTVT 10
PPG PG V
Sbjct: 31 PPGKPGVVI 39


>sp|CREN7_PYRIL|CHROMATIN protein Cren7|Pyrobaculum islandicum (strain DSM 4184

Query: 2 PPGPPGTVT 10
PPG PG V
Sbjct: 30 PPGKPGVVI 38


>sp|PAN_AERPE|PROTEASOME-ACTIVATING nucleotidase|Aeropyrum pernix (strain ATCC 700893

Query: 4 GPPGT 8
GPPGT
Sbjct: 180 GPPGT 184


>sp|RS2_SULAC|SMALL ribosomal subunit protein uS2|Sulfolobus acidocaldarius (strain

Query: 5 PPGTVT 10
PPGT+T
Sbjct: 121 PPGTLT 126




91|SequenceR|460|451|QLGQPGPPGP

>sp|SYR_SULTO|ARGININE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 LGQPGPP 8
LG+P PP
Sbjct: 170 LGEPNPP 176


>sp|Y520_METJA|PUTATIVE NADH-ubiquinone oxidoreductase MJ0520|Methanocaldococcus

Query: 3 GQPGPP 8
G+PGPP
Sbjct: 38 GRPGPP 43


>sp|TRMY_METJA|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanocaldococcus

Query: 3 GQPGPP 8
GQP PP
Sbjct: 58 GQPNPP 63


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 QLGQPGPPG 9
+LG PGP G
Sbjct: 183 ELGYPGPEG 191


>sp|RS3A_AERPE|SMALL ribosomal subunit protein eS1|Aeropyrum pernix (strain ATCC 700893

Query: 5 PGPPGP 10
PGP GP
Sbjct: 195 PGPNGP 200


>sp|IPK_THEAC|ISOPENTENYL phosphate kinase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 QLGQPGPPGP 10
+ G PGP P
Sbjct: 55 EFGLPGPKNP 64


>sp|DNLI_METTH|DNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 QLGQPGPPG 9
Q GQP PG
Sbjct: 553 QSGQPDQPG 561


>sp|TRMY_METAR|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanocella arvoryzae

Query: 2 LGQPGPP 8
LG+P PP
Sbjct: 57 LGEPTPP 63


>sp|RRP42_PYRAE|EXOSOME complex component Rrp42|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 LGQPGPPGP 10
LGQP P P
Sbjct: 72 LGQPFPDAP 80


>sp|ADH_SACS2|NAD-DEPENDENT alcohol dehydrogenase|Saccharolobus solfataricus (strain ATCC

Query: 1 QLGQPGPPGP 10
++G P P GP
Sbjct: 17 EIGVPKPKGP 26


>sp|DTDA_HYPBU|D-AMINOACYL-TRNA deacylase|Hyperthermus butylicus (strain DSM 5456

Query: 3 GQPGPPGP 10
G PGP P
Sbjct: 89 GNPGPEAP 96


>sp|FAU1_PYRAE|PROBABLE ribonuclease FAU-1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 QLGQPGPPG 9
QL GPPG
Sbjct: 217 QLSHGGPPG 225


>sp|ACSA_PYRAE|ACETYL-COENZYME A synthetase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 GQPGPPG 9
G P PPG
Sbjct: 470 GNPAPPG 476


>sp|TRMY_PYRHO|TRNA (pseudouridine(54)-N(1))-methyltransferase|Pyrococcus horikoshii

Query: 2 LGQPGPP 8
LG P PP
Sbjct: 57 LGPPSPP 63




92|SequenceR|465|456|EGKPGQLGQP

>sp|AMT3_ARCFU|AMMONIUM transporter Amt3|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EGKPGQLG 8
+GKPG LG
Sbjct: 241 KGKPGSLG 248


>sp|AMT1_ARCFU|AMMONIUM transporter Amt1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EGKPGQLG 8
+GKPG LG
Sbjct: 241 KGKPGSLG 248


>sp|HBCL1_METS5|4-HYDROXYBUTYRATE--COA ligase 1|Metallosphaera sedula (strain ATCC 51363

Query: 3 KPGQLGQP 10
KPG +G+P
Sbjct: 363 KPGSMGKP 370


>sp|Y912_METJA|UNCHARACTERIZED protein MJ0912|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 PGQLGQP 10
PG +GQP
Sbjct: 185 PGSVGQP 191


>sp|DPOL_THEHY|DNA polymerase|Thermococcus hydrothermalis

Query: 1 EGKPGQLGQ 9
E KPG+LG+
Sbjct: 1155 EVKPGELGE 1163


>sp|DTDA_DESA1|D-AMINOACYL-TRNA deacylase|Desulfurococcus amylolyticus (strain DSM 18924

Query: 2 GKPGQLG 8
G+PG+LG
Sbjct: 99 GRPGELG 105


>sp|IF2G_AERPE|TRANSLATION initiation factor 2 subunit|Aeropyrum pernix (strain ATCC 700893

Query: 2 GKPGQLGQP 10
GKPG+L +P
Sbjct: 318 GKPGELPEP 326


>sp|DTDA_CALMQ|D-AMINOACYL-TRNA deacylase|Caldivirga maquilingensis (strain ATCC 700844

Query: 2 GKPGQLG 8
GKPGQ+
Sbjct: 98 GKPGQVA 104


>sp|RAD50_HALSA|DNA double-strand break repair Rad50|Halobacterium salinarum (strain

Query: 1 EGKPGQLGQP 10
EGK + GQP
Sbjct: 451 EGKCPECGQP 460


>sp|RL14_NANEQ|LARGE ribosomal subunit protein uL14|Nanoarchaeum equitans (strain

Query: 1 EGKPGQLGQ 9
+GKP +GQ
Sbjct: 59 DGKPDMIGQ 67


>sp|Y1464_METJA|UNCHARACTERIZED GTP-binding protein MJ1464|Methanocaldococcus jannaschii (strain

Query: 1 EGKPGQLGQP 10
EGK G +G P
Sbjct: 110 EGKVGIVGYP 119


>sp|IF5A_METVS|TRANSLATION initiation factor 5A|Methanococcus vannielii (strain ATCC 35089

Query: 3 KPGQLGQ 9
KPG LGQ
Sbjct: 5 KPGDLGQ 11


>sp|IF2G_THEKO|TRANSLATION initiation factor 2 subunit|Thermococcus kodakarensis (strain ATCC

Query: 2 GKPGQL 7
GKPGQL
Sbjct: 313 GKPGQL 318


>sp|IF2G_THEON|TRANSLATION initiation factor 2 subunit|Thermococcus onnurineus (strain NA1)

Query: 2 GKPGQL 7
GKPGQL
Sbjct: 313 GKPGQL 318


>sp|CARB_PYRAE|CARBAMOYL phosphate synthase large chain|Pyrobaculum aerophilum (strain ATCC

Query: 2 GKPGQLGQP 10
G+PG +G P
Sbjct: 398 GEPGLVGGP 406


>sp|LEUC_SULTO|3-ISOPROPYLMALATE dehydratase large subunit|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 EGKPGQ 6
EGKPG+
Sbjct: 163 EGKPGK 168




93|SequenceR|470|461|GPSGQEGKPG

>sp|Y360_METJA|UNCHARACTERIZED protein MJ0360|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GPSGQEGK 8
GP G+EGK
Sbjct: 113 GPIGEEGK 120


>sp|RS4E_NATPD|SMALL ribosomal subunit protein eS4|Natronomonas pharaonis (strain ATCC

Query: 1 GPSGQEGKP 9
GP G+EG P
Sbjct: 30 GPHGEEGVP 38


>sp|HELS_SULTO|ATP-DEPENDENT DNA helicase Hel308|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 SGQEGKPG 10
SG+ G+PG
Sbjct: 382 SGRAGRPG 389


>sp|HELS_SULAC|ATP-DEPENDENT DNA helicase Hel308|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 SGQEGKPG 10
SG+ G+PG
Sbjct: 383 SGRAGRPG 390


>sp|HELS_SACS9|ATP-DEPENDENT DNA helicase Hel308|Saccharolobus solfataricus (strain 98/2)

Query: 3 SGQEGKPG 10
SG+ G+PG
Sbjct: 387 SGRAGRPG 394


>sp|HELS_SACS2|ATP-DEPENDENT DNA helicase Hel308|Saccharolobus solfataricus (strain ATCC 35092

Query: 3 SGQEGKPG 10
SG+ G+PG
Sbjct: 380 SGRAGRPG 387


>sp|HELS_SACI5|ATP-DEPENDENT DNA helicase Hel308|Saccharolobus islandicus (strain REY15A)

Query: 3 SGQEGKPG 10
SG+ G+PG
Sbjct: 387 SGRAGRPG 394


>sp|PUR5_METM7|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Methanococcus maripaludis (strain C7 /

Query: 3 SGQEGKPG 10
SG+E KPG
Sbjct: 162 SGKEVKPG 169


>sp|PUR5_METM5|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Methanococcus maripaludis (strain C5 /

Query: 3 SGQEGKPG 10
SG+E KPG
Sbjct: 162 SGKEVKPG 169


>sp|PUR5_METM6|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Methanococcus maripaludis (strain C6 /

Query: 3 SGQEGKPG 10
SG+E KPG
Sbjct: 162 SGKEVKPG 169


>sp|PRIS_SACI7|DNA primase small subunit PriS|Saccharolobus islandicus (strain

Query: 2 PSGQEGKPG 10
P G E PG
Sbjct: 212 PGGSESAPG 220


>sp|PRIS_SACI2|DNA primase small subunit PriS|Saccharolobus islandicus (strain

Query: 2 PSGQEGKPG 10
P G E PG
Sbjct: 212 PGGSESAPG 220


>sp|PRIS_SACI1|DNA primase small subunit PriS|Saccharolobus islandicus (strain

Query: 2 PSGQEGKPG 10
P G E PG
Sbjct: 212 PGGSESAPG 220


>sp|PRIS_SACS2|DNA primase small subunit PriS|Saccharolobus solfataricus (strain ATCC

Query: 2 PSGQEGKPG 10
P G E PG
Sbjct: 212 PGGSENAPG 220


>sp|HISX_METMP|HISTIDINOL dehydrogenase|Methanococcus maripaludis (strain DSM 14266

Query: 2 PSGQEGKPG 10
P+G EG P
Sbjct: 160 PNGTEGNPA 168


>sp|RL24_SACS2|LARGE ribosomal subunit protein uL24|Saccharolobus solfataricus (strain

Query: 1 GPSGQEGK 8
G SG+EGK
Sbjct: 56 GNSGKEGK 63




94|SequenceR|475|466|DMGPIGPSGQ

>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 3 GPIGPSG 9
GP+GP+G
Sbjct: 217 GPMGPTG 223


>sp|COXX_KORCO|PROTOHEME IX farnesyltransferase|Korarchaeum cryptofilum (strain OPF8)

Query: 2 MGPIGP 7
MGP+GP
Sbjct: 230 MGPLGP 235


>sp|CDC69_HALSA|ORC1-TYPE DNA replication protein 9|Halobacterium salinarum (strain ATCC

Query: 3 GPIGPS 8
GP+GPS
Sbjct: 294 GPLGPS 299


>sp|KGSDH_SACS2|2,5-DIOXOPENTANOATE dehydrogenase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 DMGPIGPSGQ 10
DMGP+ GQ
Sbjct: 320 DMGPVVDEGQ 329


>sp|SYG_METTH|GLYCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 DMGPIGP 7
DMG +GP
Sbjct: 366 DMGKLGP 372


>sp|SYI_METBU|ISOLEUCINE--TRNA ligase|Methanococcoides burtonii (strain DSM 6242

Query: 4 PIGPSG 9
P+GP+G
Sbjct: 348 PVGPNG 353


>sp|SYI_METBF|ISOLEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 4 PIGPSG 9
P+GP+G
Sbjct: 348 PVGPNG 353


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 2 MGPIGP 7
MGP+GP
Sbjct: 440 MGPMGP 445


>sp|HIS7_METMJ|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 DMGPIGPSG 9
D P+GP G
Sbjct: 120 DFSPVGPGG 128


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 MGPIGPSG 9
+GP+GP+
Sbjct: 39 LGPMGPTA 46


>sp|ACDA1_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 MGPIGPSG 9
+GP+GPS
Sbjct: 39 LGPMGPSA 46


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 MGPIGPSG 9
+GP+GP+
Sbjct: 39 LGPMGPTA 46


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 2 MGPIGPS 8
+GP+GP+
Sbjct: 39 LGPMGPT 45


>sp|AMPPA_METJA|AMP phosphorylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 DMGPIGPSGQ 10
+MG + P+G+
Sbjct: 364 EMGGVAPTGE 373


>sp|MBHLA_PYRFU|MEMBRANE-BOUND hydrogenase subunit alpha|Pyrococcus furiosus (strain ATCC 43587

Query: 1 DMGPIGPSGQ 10
+MG +GP+ +
Sbjct: 213 EMGAVGPTAR 222




95|SequenceR|480|471|LGQEGDMGPI

>sp|EF2_METS3|ELONGATION factor 2|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 LGQEGDMGPI 10
+GQEGDM I
Sbjct: 655 MGQEGDMATI 664


>sp|EF2_METST|ELONGATION factor 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 LGQEGDMGPI 10
+GQEGDM I
Sbjct: 655 MGQEGDMSTI 664


>sp|SYM_METBF|METHIONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 LGQEGDM 7
LGQEGD+
Sbjct: 502 LGQEGDL 508


>sp|RIBL_THEVO|FAD synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 LGQEGDM 7
LG EGDM
Sbjct: 70 LGHEGDM 76


>sp|PUR2_THEKO|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 EGDMGPI 10
EGD+GPI
Sbjct: 217 EGDVGPI 223


>sp|PUR2_PYRFU|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 4 EGDMGPI 10
EGD+GPI
Sbjct: 219 EGDVGPI 225


>sp|PUR2_PYRHO|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 EGDMGPI 10
EGD+GPI
Sbjct: 218 EGDVGPI 224


>sp|PUR2_PYRAB|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Pyrococcus abyssi (strain GE5 /

Query: 4 EGDMGPI 10
EGD+GPI
Sbjct: 218 EGDVGPI 224


>sp|PUR2_METTH|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 4 EGDMGPI 10
EGD GPI
Sbjct: 220 EGDQGPI 226


>sp|RS8_PYRAE|SMALL ribosomal subunit protein uS8|Pyrobaculum aerophilum (strain ATCC

Query: 1 LGQEGDMGPI 10
LG+ D+GPI
Sbjct: 66 LGKINDIGPI 75


>sp|RS8_PYRNV|SMALL ribosomal subunit protein uS8|Pyrobaculum neutrophilum (strain

Query: 1 LGQEGDMGPI 10
LG+ D+GPI
Sbjct: 66 LGKINDIGPI 75


>sp|Y3407_METJA|UNCHARACTERIZED protein MJECS07|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LGQEGDMG 8
+G+EGD G
Sbjct: 197 VGKEGDTG 204


>sp|RS8_PYRIL|SMALL ribosomal subunit protein uS8|Pyrobaculum islandicum (strain DSM

Query: 1 LGQEGDMGPI 10
LG+ D+GPI
Sbjct: 66 LGKINDIGPI 75


>sp|RS8_PYRAR|SMALL ribosomal subunit protein uS8|Pyrobaculum arsenaticum (strain DSM

Query: 1 LGQEGDMGPI 10
LG+ D+GPI
Sbjct: 66 LGKINDIGPI 75


>sp|SYA_METS3|ALANINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 3 QEGDMGPI 10
+ GD+GPI
Sbjct: 702 RTGDIGPI 709


>sp|PUR2_METBF|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanosarcina barkeri (strain Fusaro /

Query: 4 EGDMGP 9
EGD+GP
Sbjct: 218 EGDLGP 223


>sp|PUR2_METAC|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 4 EGDMGP 9
EGD+GP
Sbjct: 220 EGDLGP 225


>sp|PUR2_METKA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanopyrus kandleri (strain AV19 /

Query: 4 EGDMGPI 10
EGD GPI
Sbjct: 226 EGDKGPI 232


>sp|PURQ_NATPD|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurQ|Natronomonas pharaonis (strain ATCC 35678

Query: 1 LGQEGDMGP 9
+G EGD+ P
Sbjct: 90 IGSEGDLTP 98


>sp|PUR2_METLZ|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 4 EGDMGP 9
EGD+GP
Sbjct: 216 EGDVGP 221


>sp|PUR2_METMA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 EGDMGP 9
EGD+GP
Sbjct: 220 EGDIGP 225


>sp|DAPB_METKA|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanopyrus kandleri (strain AV19 /

Query: 1 LGQEGDMGP 9
G+EG++GP
Sbjct: 190 FGREGNVGP 198




96|SequenceR|485|476|GKSGKLGQEG

>sp|DAPAT_METST|LL-DIAMINOPIMELATE aminotransferase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 GKSGKLGQEG 10
G+SGK+G++G
Sbjct: 144 GRSGKMGEDG 153


>sp|FLAB2_ARCFU|PROBABLE flagellin 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GKSGKLGQ 8
G SGK+GQ
Sbjct: 84 GSSGKVGQ 91


>sp|Y978_PYRFU|UPF0252 protein PF0978|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GKSGKLGQEG 10
GK+GKL +G
Sbjct: 171 GKAGKLITQG 180


>sp|SURE_AERPE|5'-NUCLEOTIDASE SurE|Aeropyrum pernix (strain ATCC 700893

Query: 3 SGKLGQEG 10
SG++G+EG
Sbjct: 188 SGEIGEEG 195




97|SequenceR|490|481|PDGMDGKSGK

>sp|Y942_METJA|PROBABLE ATP-dependent helicase MJ0942|Methanocaldococcus jannaschii (strain

Query: 3 GMDGKSGK 10
GMDGK K
Sbjct: 498 GMDGKEAK 505


>sp|Y1396_METJA|UNCHARACTERIZED protein MJ1396|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PDGMDG 6
PDG DG
Sbjct: 1529 PDGADG 1534


Query: 1 PDGMDG 6
PDG DG
Sbjct: 1862 PDGADG 1867


>sp|DP2L_THEVO|DNA polymerase II large subunit|Thermoplasma volcanium (strain ATCC

Query: 1 PDGMDG 6
PDG+DG
Sbjct: 434 PDGLDG 439


>sp|BAT_HALSA|BACTERIOOPSIN transcriptional activator|Halobacterium salinarum (strain ATCC

Query: 1 PDGMDG 6
PDG DG
Sbjct: 71 PDGFDG 76


>sp|AATA_THEVO|A-TYPE ATP synthase subunit A|Thermoplasma volcanium (strain ATCC 51530

Query: 1 PDGMDGK 7
PDG+ GK
Sbjct: 149 PDGVSGK 155


>sp|AROC_HALMA|CHORISMATE synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 PDGMDGKSGK 10
PD +DG+ G+
Sbjct: 363 PDRLDGRPGE 372




98|SequenceR|495|486|EGTMGPDGMD

>sp|THSA_ARCFU|THERMOSOME subunit alpha|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EGTMGPDGMD 10
+ T+GP GMD
Sbjct: 40 KSTLGPKGMD 49


>sp|THS_METJA|THERMOSOME subunit|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 41 TLGPKGMD 48


>sp|THSB_METTH|CHAPERONIN subunit beta|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 41 TLGPKGMD 48


>sp|THSA_THEKO|CHAPERONIN subunit alpha|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPKGMD 49


>sp|THSA_THEK1|CHAPERONIN subunit alpha|Thermococcus sp. (strain JCM 11816

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPKGMD 49


>sp|THSB_ARCFU|THERMOSOME subunit beta|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPKGMD 49


>sp|THSA_THEAC|THERMOSOME subunit alpha|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 41 TLGPKGMD 48


>sp|THS_METMP|CHAPERONIN subunit|Methanococcus maripaludis (strain DSM 14266

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 38 TLGPKGMD 45


>sp|THSA_METTH|CHAPERONIN subunit alpha|Methanothermobacter thermautotrophicus (strain ATCC

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 41 TLGPKGMD 48


>sp|TRPE_HALVD|ANTHRANILATE synthase component 1|Haloferax volcanii (strain ATCC 29605

Query: 3 TMGPDGMD 10
T+GPDG+D
Sbjct: 93 TVGPDGVD 100


>sp|THSA_HALSA|THERMOSOME subunit alpha|Halobacterium salinarum (strain ATCC 700922

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 43 TLGPKGMD 50


>sp|THS_METTL|CHAPERONIN subunit|Methanothermococcus thermolithotrophicus

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 40 TLGPKGMD 47


>sp|THS_PYRHO|THERMOSOME subunit|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPKGMD 49


>sp|THS_PYRAB|THERMOSOME subunit|Pyrococcus abyssi (strain GE5 /

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPKGMD 49


>sp|THS1_HALVD|CHAPERONIN subunit CTT1|Haloferax volcanii (strain ATCC 29605

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 44 TLGPKGMD 51


>sp|THS_DESSY|THERMOSOME subunit|Desulfurococcus sp. (strain SY)

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPKGMD 49


>sp|THSB_THEK8|CHAPERONIN subunit beta|Thermococcus sp. (strain KS-8)

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPKGMD 49


>sp|THSA_THEK8|CHAPERONIN subunit alpha|Thermococcus sp. (strain KS-8)

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPKGMD 49


>sp|THSB_THEKO|CHAPERONIN subunit beta|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPKGMD 49


>sp|THSB_THEK1|CHAPERONIN subunit beta|Thermococcus sp. (strain JCM 11816

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPKGMD 49


>sp|THS3_HALVD|CHAPERONIN subunit CTT3|Haloferax volcanii (strain ATCC 29605

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 42 TLGPRGMD 49


>sp|THSB_AERPE|THERMOSOME subunit beta|Aeropyrum pernix (strain ATCC 700893

Query: 3 TMGPDGMD 10
T GP GMD
Sbjct: 49 TYGPKGMD 56


>sp|PYRB_METLZ|ASPARTATE carbamoyltransferase catalytic subunit|Methanocorpusculum labreanum

Query: 3 TMGPDGMD 10
T+ PDG+D
Sbjct: 183 TIAPDGLD 190


>sp|SYI_SULTO|ISOLEUCINE--TRNA ligase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GTMGPD 7
GT+GPD
Sbjct: 882 GTIGPD 887


>sp|THSB_SULTO|CHAPERONIN subunit beta|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 EGTMGPDGMD 10
+ T GP GMD
Sbjct: 47 KSTYGPRGMD 56


>sp|THSB_DESM0|CHAPERONIN subunit beta|Desulfurococcus mucosus (strain ATCC 35584

Query: 3 TMGPDGMD 10
T GP GMD
Sbjct: 43 TYGPKGMD 50


>sp|THSB_SULAC|CHAPERONIN subunit beta|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 TMGPDGMD 10
T GP GMD
Sbjct: 49 TYGPRGMD 56


>sp|Y1318_METJA|UNCHARACTERIZED protein MJ1318|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GTMGPDG 8
GT+ PDG
Sbjct: 136 GTINPDG 142


>sp|THSB_SACS2|CHAPERONIN subunit beta|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 EGTMGPDGMD 10
+ T GP GMD
Sbjct: 46 KSTYGPRGMD 55


>sp|THS2_HALVD|CHAPERONIN subunit CTT2|Haloferax volcanii (strain ATCC 29605

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 44 TLGPKGMD 51


>sp|MRE11_PYRAB|DNA double-strand break repair protein|Pyrococcus abyssi (strain GE5 /

Query: 5 GPDGMD 10
GPDG D
Sbjct: 341 GPDGKD 346


>sp|THSB_SACSH|CHAPERONIN subunit beta|Saccharolobus shibatae (strain ATCC 51178

Query: 1 EGTMGPDGMD 10
+ T GP GMD
Sbjct: 46 KSTYGPRGMD 55


>sp|THSB_HALSA|THERMOSOME subunit beta|Halobacterium salinarum (strain ATCC 700922

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 45 TLGPKGMD 52


>sp|THS_METKA|THERMOSOME subunit|Methanopyrus kandleri (strain AV19 /

Query: 3 TMGPDGMD 10
T+GP GMD
Sbjct: 44 TLGPMGMD 51


>sp|CIMA_METKA|PUTATIVE (R)-citramalate synthase CimA|Methanopyrus kandleri (strain AV19 /

Query: 2 GTMGPDGM 9
G M P+GM
Sbjct: 178 GVMAPEGM 185


>sp|THSB_THEAC|THERMOSOME subunit beta|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 TMGPDGMD 10
++GP GMD
Sbjct: 40 SLGPRGMD 47


>sp|THSG_SACS2|CHAPERONIN subunit gamma|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 EGTMGPDGMD 10
+ ++GP G+D
Sbjct: 33 KSSLGPKGLD 42


>sp|PSTB2_NATPD|PHOSPHATE import ATP-binding protein PstB|Natronomonas pharaonis (strain

Query: 1 EGTMGPDGMD 10
+GT+G DG D
Sbjct: 89 DGTIGLDGTD 98


>sp|THSG_SACSH|CHAPERONIN subunit gamma|Saccharolobus shibatae (strain ATCC 51178

Query: 1 EGTMGPDGMD 10
+ ++GP G+D
Sbjct: 33 KSSLGPKGLD 42


>sp|DHE3_THEPR|GLUTAMATE dehydrogenase|Thermococcus profundus

Query: 2 GTMGPDGMD 10
G PDG+D
Sbjct: 248 GIYNPDGLD 256


>sp|FEN_CENSY|FLAP endonuclease 1|Cenarchaeum symbiosum (strain A)

Query: 5 GPDGM 9
GPDGM
Sbjct: 41 GPDGM 45


>sp|Y574_METTH|UNCHARACTERIZED protein MTH_574|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 GTMGPDGMD 10
G M PDG D
Sbjct: 191 GAMFPDGKD 199


>sp|CSG2_HALHT|CELL surface glycoprotein 2|Haloarcula hispanica (strain ATCC 33960

Query: 1 EGTMGPDGM 9
E T+GP+G
Sbjct: 694 EATVGPNGT 702




99|SequenceR|500|491|GIGGKEGTMG

>sp|KTHY_THESM|PROBABLE thymidylate kinase|Thermococcus sibiricus (strain DSM 12597

Query: 2 IGGKEGTM 9
IGGKEG +
Sbjct: 54 IGGKEGII 61


>sp|PORA_PYRHO|PYRUVATE synthase subunit PorA|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GIGGKEGTMG 10
G+GG++ T G
Sbjct: 354 GLGGRDVTFG 363


>sp|MCRB_METTM|METHYL-COENZYME M reductase I subunit|Methanothermobacter marburgensis (strain ATCC

Query: 4 GKEGTMG 10
GKEGT+G
Sbjct: 260 GKEGTVG 266


>sp|MCRB_METTH|METHYL-COENZYME M reductase I subunit|Methanothermobacter thermautotrophicus

Query: 4 GKEGTMG 10
GKEGT+G
Sbjct: 260 GKEGTVG 266


>sp|SMC_PYRFU|CHROMOSOME partition protein Smc|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GIGGKEGTMG 10
GIGG GT+
Sbjct: 518 GIGGIYGTLA 527


>sp|GSA_SULAC|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 GIGGKEGT 8
G+GG +GT
Sbjct: 240 GLGGAQGT 247


>sp|LEU3_METTH|3-ISOPROPYLMALATE dehydrogenase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 IGGKEGTM 9
+GGK GTM
Sbjct: 310 LGGKLGTM 317


>sp|AATF_METPE|A-TYPE ATP synthase subunit F|Methanosphaerula palustris (strain ATCC

Query: 1 GIGGKEGTM 9
IGG EG M
Sbjct: 76 AIGGSEGDM 84


>sp|AROB_SULAC|3-DEHYDROQUINATE synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 GIGGKEG 7
GIGGK G
Sbjct: 128 GIGGKNG 134


>sp|FAEHP_METMJ|BIFUNCTIONAL enzyme Fae/Hps|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 IGGKEGTMG 10
+G KEG +G
Sbjct: 22 MGNKEGAVG 30




100|SequenceR|505|496|PLGPLGIGGK

>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 1 PLGPLGIG 8
P+GP GIG
Sbjct: 218 PMGPTGIG 225


>sp|RPO1C_METVS|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanococcus vannielii (strain ATCC

Query: 1 PLGPLGIGGK 10
P+G GIGG+
Sbjct: 314 PIGRHGIGGE 323


>sp|RPO1C_METMP|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanococcus maripaludis (strain DSM

Query: 1 PLGPLGIGGK 10
P+G GIGG+
Sbjct: 314 PIGRHGIGGE 323


>sp|RPO1C_METM7|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanococcus maripaludis (strain C7 /

Query: 1 PLGPLGIGGK 10
P+G GIGG+
Sbjct: 314 PIGRHGIGGE 323


>sp|RPO1C_METM6|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanococcus maripaludis (strain C6 /

Query: 1 PLGPLGIGGK 10
P+G GIGG+
Sbjct: 314 PIGRHGIGGE 323


>sp|RPO1C_METM5|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanococcus maripaludis (strain C5 /

Query: 1 PLGPLGIGGK 10
P+G GIGG+
Sbjct: 314 PIGRHGIGGE 323


>sp|BACS3_HALMA|SENSORY rhodopsin III|Haloarcula marismortui (strain ATCC 43049

Query: 2 LGPLGIG 8
LGPLG G
Sbjct: 180 LGPLGTG 186


>sp|CSD_HALSA|PROBABLE cysteine desulfurase|Halobacterium salinarum (strain ATCC 700922

Query: 2 LGPLGIG 8
LGP GIG
Sbjct: 235 LGPTGIG 241


>sp|TRM1_METMJ|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanoculleus marisnigri

Query: 1 PLGPLGIGG 9
P+GPL GG
Sbjct: 265 PVGPLWTGG 273


>sp|RNH2_METST|RIBONUCLEASE HII|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 LGPLGIGG 9
+GPL IGG
Sbjct: 21 IGPLVIGG 28


>sp|Y1571_AERPE|UNCHARACTERIZED protein APE_1571.1|Aeropyrum pernix (strain ATCC 700893

Query: 4 PLGIGGK 10
PLGIGGK
Sbjct: 98 PLGIGGK 104


>sp|RNH2_METBF|RIBONUCLEASE HII|Methanosarcina barkeri (strain Fusaro /

Query: 2 LGPLGIGG 9
+GP+ IGG
Sbjct: 15 IGPMCIGG 22


>sp|RNH2_METAC|RIBONUCLEASE HII|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 LGPLGIGG 9
+GP+ IGG
Sbjct: 15 IGPMCIGG 22


>sp|RNH2_METMA|RIBONUCLEASE HII|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 LGPLGIGG 9
+GP+ IGG
Sbjct: 15 IGPMCIGG 22


>sp|RIB7_ARCFU|2,5-DIAMINO-6-RIBOSYLAMINO-4(3H)-PYRIMIDINONE 5'-phosphate reductase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 GPLGIGGK 10
GP+ IGG+
Sbjct: 177 GPIFIGGR 184


>sp|SYK_SULAC|LYSINE--TRNA ligase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PLGPLGIG 8
P G LGIG
Sbjct: 462 PTGGLGIG 469


>sp|SYK_SACS2|LYSINE--TRNA ligase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PLGPLGIG 8
P G LGIG
Sbjct: 455 PTGGLGIG 462


>sp|AATI_SACS2|A-TYPE ATP synthase subunit I|Saccharolobus solfataricus (strain ATCC

Query: 2 LGPLGIGG 9
GPL +GG
Sbjct: 413 FGPLPVGG 420


>sp|RS8_THEVO|SMALL ribosomal subunit protein uS8|Thermoplasma volcanium (strain ATCC

Query: 5 LGIGGK 10
LGIGGK
Sbjct: 118 LGIGGK 123


>sp|Y1468_METJA|UNCHARACTERIZED protein MJ1468|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 PLGIGG 9
P+G+GG
Sbjct: 511 PIGVGG 516


>sp|CSD_AERPE|PROBABLE cysteine desulfurase|Aeropyrum pernix (strain ATCC 700893

Query: 2 LGPLGIG 8
LGP GIG
Sbjct: 223 LGPTGIG 229


>sp|RS8_THEAC|SMALL ribosomal subunit protein uS8|Thermoplasma acidophilum (strain ATCC

Query: 5 LGIGGK 10
LGIGGK
Sbjct: 118 LGIGGK 123


>sp|RS8_PICTO|SMALL ribosomal subunit protein uS8|Picrophilus torridus (strain ATCC

Query: 5 LGIGGK 10
LGIGGK
Sbjct: 118 LGIGGK 123


>sp|RNH2_METBU|RIBONUCLEASE HII|Methanococcoides burtonii (strain DSM 6242

Query: 2 LGPLGIGG 9
+GP+ IGG
Sbjct: 15 IGPMCIGG 22


>sp|AATA_METM5|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C5 /

Query: 4 PLGIGGK 10
PLGI GK
Sbjct: 152 PLGISGK 158


>sp|RL11_METPE|LARGE ribosomal subunit protein uL11|Methanosphaerula palustris (strain

Query: 2 LGPLGIGGK 10
LGPLGI K
Sbjct: 24 LGPLGINVK 32


>sp|RL11_METB6|LARGE ribosomal subunit protein uL11|Methanoregula boonei (strain DSM

Query: 2 LGPLGIGGK 10
LGPLGI K
Sbjct: 24 LGPLGINVK 32


>sp|TRPF_SACS2|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 LGIGGK 10
LG+GGK
Sbjct: 149 LGVGGK 154


>sp|RL11_METHJ|LARGE ribosomal subunit protein uL11|Methanospirillum hungatei JF-1

Query: 2 LGPLGIGGK 10
LGPLGI K
Sbjct: 24 LGPLGINVK 32


>sp|RL11_METMJ|LARGE ribosomal subunit protein uL11|Methanoculleus marisnigri (strain

Query: 2 LGPLGIGGK 10
LGPLGI K
Sbjct: 24 LGPLGINVK 32


>sp|IDH_HALVD|ISOCITRATE dehydrogenase [NADP]|Haloferax volcanii (strain ATCC 29605

Query: 3 GPLGIGGK 10
GP+GIG K
Sbjct: 190 GPVGIGIK 197


>sp|RL11_METAR|LARGE ribosomal subunit protein uL11|Methanocella arvoryzae (strain DSM

Query: 2 LGPLGIGGK 10
LGPLGI K
Sbjct: 24 LGPLGINIK 32


>sp|Y719_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 2 LGPLGIG 8
LGP GIG
Sbjct: 379 LGPNGIG 385




101|SequenceR|510|501|MGNAGPLGPL

>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 2 GNAGPLGP 9
G+ GP+GP
Sbjct: 214 GHKGPMGP 221


>sp|Y863_METTH|UNCHARACTERIZED protein MTH_863|Methanothermobacter thermautotrophicus (strain

Query: 1 MGNAGPLGPL 10
+GNA P+G L
Sbjct: 46 VGNAAPIGVL 55


>sp|FDHB_METTF|F420-DEPENDENT formate dehydrogenase subunit beta|Methanothermobacter

Query: 1 MGNAGPLGPL 10
+GN G +GPL
Sbjct: 205 LGNWGVIGPL 214


>sp|GSA_METBF|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina barkeri (strain Fusaro /

Query: 1 MGNAGPLGPL 10
+GN GP+ PL
Sbjct: 210 LGNIGPITPL 219


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 2 GNAGPLGPL 10
G GP+GP+
Sbjct: 438 GGMGPMGPM 446


>sp|Y1985_PYRAR|UPF0201 protein Pars_1985|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 NAGPLGPL 10
N PLGP+
Sbjct: 103 NESPLGPI 110


>sp|Y1787_METS5|UPF0201 protein Msed_1787|Metallosphaera sedula (strain ATCC 51363

Query: 3 NAGPLGPL 10
N PLGP+
Sbjct: 102 NESPLGPI 109


>sp|Y1658_PYRIL|UPF0201 protein Pisl_1658|Pyrobaculum islandicum (strain DSM 4184

Query: 3 NAGPLGPL 10
N PLGP+
Sbjct: 103 NESPLGPI 110


>sp|GSA_METAC|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 MGNAGPLGPL 10
+GN GP+ PL
Sbjct: 210 LGNIGPILPL 219


>sp|MUTS_METTP|DNA mismatch repair protein MutS|Methanothrix thermoacetophila (strain

Query: 1 MGNAGP 6
+GNAGP
Sbjct: 344 LGNAGP 349


>sp|CDC69_HALSA|ORC1-TYPE DNA replication protein 9|Halobacterium salinarum (strain ATCC

Query: 5 GPLGP 9
GPLGP
Sbjct: 294 GPLGP 298


>sp|PYRK_METBU|PROBABLE dihydroorotate dehydrogenase B (NAD(+)),|Methanococcoides burtonii

Query: 4 AGPLGPL 10
A PLGPL
Sbjct: 105 AAPLGPL 111


>sp|GSA_METMA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 MGNAGPLGPL 10
+GN GP+ PL
Sbjct: 210 LGNIGPVLPL 219


>sp|Y399_METKA|UPF0201 protein MK0399|Methanopyrus kandleri (strain AV19 /

Query: 2 GNAGPLGPL 10
G PLGP+
Sbjct: 108 GGESPLGPI 116


>sp|GSA_METLZ|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 MGNAGPLGP 9
MGN GP+ P
Sbjct: 202 MGNVGPVLP 210


>sp|GSA_METPE|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosphaerula palustris (strain ATCC BAA-1556

Query: 1 MGNAGPLGP 9
MGN GP+ P
Sbjct: 204 MGNIGPILP 212


>sp|MPG1_SULAC|PUTATIVE mannose-1-phosphate guanyltransferase|Sulfolobus acidocaldarius

Query: 1 MGNAGPL 7
+G+AGPL
Sbjct: 83 LGDAGPL 89


>sp|GSA_METMJ|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 MGNAGPLGP 9
MGN GP+ P
Sbjct: 202 MGNVGPVLP 210


>sp|FDHB_METFO|F420-DEPENDENT formate dehydrogenase subunit beta|Methanobacterium formicicum

Query: 2 GNAGPLGPL 10
GN G +GPL
Sbjct: 207 GNWGVIGPL 215


>sp|GSA_METTP|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 MGNAGPLGPL 10
+GN GP+ P+
Sbjct: 214 LGNIGPVLPM 223


>sp|GSA_METAR|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanocella arvoryzae (strain DSM 22066

Query: 1 MGNAGPLGP 9
MGN GP+ P
Sbjct: 206 MGNMGPILP 214


>sp|COXX_KORCO|PROTOHEME IX farnesyltransferase|Korarchaeum cryptofilum (strain OPF8)

Query: 5 GPLGPL 10
GPLGP+
Sbjct: 231 GPLGPI 236


>sp|GSA_METHJ|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 MGNAGPLGP 9
MGN GP+ P
Sbjct: 205 MGNIGPVLP 213


>sp|SECD_HALVD|PROTEIN-EXPORT membrane protein SecD|Haloferax volcanii (strain ATCC 29605

Query: 1 MGNAGPLG 8
MGN P+G
Sbjct: 29 MGNQSPIG 36


>sp|GSA_METBU|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcoides burtonii (strain DSM 6242

Query: 1 MGNAGPLGP 9
+GN GP+ P
Sbjct: 207 LGNIGPILP 215


>sp|RL3_ARCFU|LARGE ribosomal subunit protein uL3|Archaeoglobus fulgidus (strain ATCC

Query: 1 MGNAGPLGP 9
+GN GP P
Sbjct: 228 VGNLGPWNP 236




102|SequenceR|515|506|GKEGKMGNAG

>sp|DAPAT_METST|LL-DIAMINOPIMELATE aminotransferase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 GKEGKMGNAG 10
G+ GKMG G
Sbjct: 144 GRSGKMGEDG 153


>sp|RPA_METTH|REPLICATION factor A|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 GKEGKMGN 8
G+EGK+ N
Sbjct: 99 GREGKLAN 106


>sp|LHRC2_THEBM|ATP-DEPENDENT helicase Lhr-Core protein 2|Thermococcus barophilus (strain DSM

Query: 2 KEGKMGNAG 10
KEGK G G
Sbjct: 490 KEGKFGRRG 498


>sp|RL4_AERPE|LARGE ribosomal subunit protein uL4|Aeropyrum pernix (strain ATCC 700893

Query: 1 GKEGKMGNAG 10
KEGK NAG
Sbjct: 185 AKEGKRYNAG 194


>sp|GPMI2_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase 2|Methanosarcina acetivorans (strain ATCC

Query: 3 EGKMGNA 9
EG+MGN+
Sbjct: 64 EGQMGNS 70




103|SequenceR|520|511|PMGSDGKEGK

>sp|IDSA_METJA|SHORT chain isoprenyl diphosphate synthase|Methanocaldococcus jannaschii

Query: 1 PMGSDGKEGK 10
P+GSD +EGK
Sbjct: 232 PVGSDIREGK 241


>sp|TYW3_THESM|TRNA(PHE) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-

Query: 1 PMGSDGK 7
P+GSDG+
Sbjct: 153 PLGSDGE 159


>sp|IDSA_METTM|SHORT chain isoprenyl diphosphate synthase|Methanothermobacter

Query: 1 PMGSDGKEGK 10
P+GSD EGK
Sbjct: 229 PVGSDIAEGK 238


>sp|DPOL_PYRSD|DNA polymerase|Pyrococcus sp. (strain GB-D)

Query: 1 PMGSDGKEGK 10
P+G DG E K
Sbjct: 231 PLGRDGSEPK 240


>sp|IDSA_METTH|SHORT chain isoprenyl diphosphate synthase|Methanothermobacter

Query: 1 PMGSDGKEGK 10
P+GSD EGK
Sbjct: 229 PVGSDIAEGK 238


>sp|DPOL_PYRGL|DNA polymerase|Pyrococcus glycovorans

Query: 1 PMGSDGKEGK 10
P+G DG E K
Sbjct: 231 PLGRDGSEPK 240


>sp|GLMA_PYRHO|EXO-BETA-D-GLUCOSAMINIDASE horikoshii (strain ATCC 700860

Query: 1 PMGSDGKE 8
P+G DG+E
Sbjct: 405 PIGLDGRE 412


>sp|Y942_METJA|PROBABLE ATP-dependent helicase MJ0942|Methanocaldococcus jannaschii (strain

Query: 3 GSDGKEGK 10
G DGKE K
Sbjct: 498 GMDGKEAK 505


>sp|THII_THEVO|TRNA sulfurtransferase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 PMGSDGK 7
P+GS+GK
Sbjct: 164 PLGSEGK 170


>sp|TYW32_PYRFU|TRNA(PHE) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-

Query: 1 PMGSDGK 7
P+G DGK
Sbjct: 144 PLGKDGK 150


>sp|CISY_PYRFU|CITRATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 5 DGKEGK 10
DGKEGK
Sbjct: 25 DGKEGK 30


>sp|THII_PYRAE|TRNA sulfurtransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PMGSDGK 7
P+GS+GK
Sbjct: 166 PLGSEGK 172


>sp|CHEB2_METHJ|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase 2|Methanospirillum

Query: 2 MGSDGKE 8
MGSDG E
Sbjct: 287 MGSDGAE 293


>sp|TYW32_PYRAB|TRNA(PHE) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-

Query: 1 PMGSDGK 7
P+G DGK
Sbjct: 144 PLGRDGK 150


>sp|CHEB_HALSA|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Halobacterium

Query: 2 MGSDGKEG 9
MGSDG +G
Sbjct: 285 MGSDGADG 292


>sp|CHEB_HALS3|PROTEIN-GLUTAMATE methylesterase/protein-glutamine glutaminase|Halobacterium

Query: 2 MGSDGKEG 9
MGSDG +G
Sbjct: 285 MGSDGADG 292


>sp|GCSPA_METS5|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Metallosphaera

Query: 1 PMGSDGK 7
P+G DGK
Sbjct: 188 PVGKDGK 194


>sp|THII_THEAC|TRNA sulfurtransferase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PMGSDGK 7
P+GS+GK
Sbjct: 164 PLGSEGK 170


>sp|SYT_METS3|THREONINE--TRNA ligase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 MGSDGKE 8
+G DGKE
Sbjct: 446 LGEDGKE 452




104|SequenceR|525|516|PGQPGPMGSD

>sp|Y1242_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 3 QPGPMG 8
+PGPMG
Sbjct: 362 KPGPMG 367


>sp|RPO1C_METTW|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanothermobacter thermautotrophicus

Query: 2 GQPGPMGS 9
GQP P+G+
Sbjct: 433 GQPIPLGT 440


>sp|RPO1C_METTH|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanothermobacter thermautotrophicus

Query: 2 GQPGPMGS 9
GQP P+G+
Sbjct: 433 GQPIPLGT 440


>sp|RPO1C_THEON|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus onnurineus (strain NA1)

Query: 2 GQPGPMGS 9
GQP P+G+
Sbjct: 368 GQPVPVGT 375


>sp|RPO1C_THEKO|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus kodakarensis (strain ATCC

Query: 2 GQPGPMGS 9
GQP P+G+
Sbjct: 368 GQPVPVGT 375


>sp|RPO1C_THECE|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus celer

Query: 2 GQPGPMGS 9
GQP P+G+
Sbjct: 370 GQPVPVGT 377


>sp|RPO1C_PYRHO|DNA-DIRECTED RNA polymerase subunit Rpo1C|Pyrococcus horikoshii (strain ATCC

Query: 2 GQPGPMGS 9
GQP P+G+
Sbjct: 370 GQPVPVGT 377


>sp|RPO1C_PYRFU|DNA-DIRECTED RNA polymerase subunit Rpo1C|Pyrococcus furiosus (strain ATCC 43587

Query: 2 GQPGPMGS 9
GQP P+G+
Sbjct: 370 GQPVPVGT 377


>sp|RPO1C_PYRAB|DNA-DIRECTED RNA polymerase subunit Rpo1C|Pyrococcus abyssi (strain GE5 /

Query: 2 GQPGPMGS 9
GQP P+G+
Sbjct: 370 GQPVPVGT 377


>sp|RPO1C_THEGJ|DNA-DIRECTED RNA polymerase subunit Rpo1C|Thermococcus gammatolerans (strain DSM

Query: 2 GQPGPMGS 9
GQP P+G+
Sbjct: 368 GQPVPVGT 375


>sp|GLGE_PICTO|ALPHA-1,4-GLUCAN:MALTOSE-1-PHOSPHATE maltosyltransferase|Picrophilus torridus (strain ATCC 700027

Query: 1 PGQPGPMGSD 10
PG P +G+D
Sbjct: 247 PGSPWAIGND 256


>sp|RS24_PYRHO|SMALL ribosomal subunit protein eS24|Pyrococcus horikoshii (strain ATCC

Query: 1 PGQPGPMGSD 10
PG+P P D
Sbjct: 26 PGEPTPSRKD 35


>sp|RS24_PYRAB|SMALL ribosomal subunit protein eS24|Pyrococcus abyssi (strain GE5 /

Query: 1 PGQPGPMGSD 10
PG+P P D
Sbjct: 26 PGEPTPSRKD 35


>sp|RS24_PYRFU|SMALL ribosomal subunit protein eS24|Pyrococcus furiosus (strain ATCC

Query: 1 PGQPGPMGSD 10
PG+P P D
Sbjct: 26 PGEPTPSRKD 35


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 GQPGPMGSD 10
G PGP G++
Sbjct: 185 GYPGPEGAE 193


>sp|AATA_THEVO|A-TYPE ATP synthase subunit A|Thermoplasma volcanium (strain ATCC 51530

Query: 4 PGPMGS 9
PGP GS
Sbjct: 228 PGPFGS 233


>sp|AATA_NANEQ|A-TYPE ATP synthase subunit A|Nanoarchaeum equitans (strain Kin4-M)

Query: 4 PGPMGS 9
PGP GS
Sbjct: 222 PGPFGS 227


>sp|AATA_THEAC|A-TYPE ATP synthase subunit A|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 PGPMGS 9
PGP GS
Sbjct: 228 PGPFGS 233


>sp|KATG_ARCFU|CATALASE-PEROXIDASE fulgidus (strain ATCC 49558

Query: 2 GQPGPMGS 9
G P P+GS
Sbjct: 216 GNPDPLGS 223




105|SequenceR|530|521|PGIISPGQPG

>sp|METK_ARCFU|S-ADENOSYLMETHIONINE synthase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GIISPGQP 9
G+I+PG+P
Sbjct: 289 GLITPGRP 296


>sp|RS3_AERPE|SMALL ribosomal subunit protein uS3|Aeropyrum pernix (strain ATCC 700893

Query: 3 IISPGQPG 10
I+ PG+PG
Sbjct: 184 IVKPGKPG 191


>sp|SUCD1_ARCFU|SUCCINATE--COA ligase [ADP-forming] subunit alpha|Archaeoglobus fulgidus (strain

Query: 1 PGIISPGQ 8
PG+ISPG+
Sbjct: 128 PGVISPGR 135


>sp|FAU1_THEPD|PROBABLE ribonuclease FAU-1|Thermofilum pendens (strain DSM 2475

Query: 1 PGIISPGQ 8
PG++ PG+
Sbjct: 228 PGVVVPGE 235


>sp|NIFK_METTH|NITROGENASE molybdenum-iron protein beta chain|Methanothermobacter

Query: 1 PGIISPG 7
PGI++PG
Sbjct: 178 PGIVNPG 184


>sp|SUCD2_ARCFU|SUCCINATE--COA ligase [ADP-forming] subunit alpha|Archaeoglobus fulgidus (strain

Query: 1 PGIISPGQ 8
PGIISPG+
Sbjct: 125 PGIISPGK 132


>sp|RTCB_METJA|TRNA-SPLICING ligase RtcB|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GIISPGQPG 10
G+ISPG G
Sbjct: 85 GVISPGGVG 93


>sp|RPO1C_METAC|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanosarcina acetivorans (strain

Query: 3 IISPGQP 9
+I+PG+P
Sbjct: 199 VITPGEP 205


>sp|PCNA_METHJ|DNA polymerase sliding clamp|Methanospirillum hungatei JF-1 (strain

Query: 1 PGIISPGQ 8
PGI PGQ
Sbjct: 123 PGIQLPGQ 130


>sp|RPO1C_METMA|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanosarcina mazei (strain ATCC

Query: 3 IISPGQP 9
+I+PG+P
Sbjct: 202 VITPGEP 208


>sp|LYSK_SULAC|[LYSW]-LYSINE/[LYSW]-ORNITHINE hydrolase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PGIISPGQPG 10
PG I+P + G
Sbjct: 72 PGFINPKEEG 81


>sp|UBIX_METTH|FLAVIN prenyltransferase UbiX|Methanothermobacter thermautotrophicus

Query: 2 GIISPGQPG 10
GII P PG
Sbjct: 145 GIILPAMPG 153


>sp|NIFK_METMP|NITROGENASE molybdenum-iron protein beta chain|Methanococcus maripaludis

Query: 1 PGIISPG 7
PGI++PG
Sbjct: 180 PGIVNPG 186


>sp|NIFK_METMI|NITROGENASE molybdenum-iron protein beta chain|Methanococcus maripaludis

Query: 1 PGIISPG 7
PGI++PG
Sbjct: 180 PGIVNPG 186


>sp|NIFK_METTM|NITROGENASE molybdenum-iron protein beta chain|Methanothermobacter marburgensis

Query: 1 PGIISPG 7
PGI++PG
Sbjct: 178 PGIVNPG 184


>sp|RTCB_METMP|TRNA-SPLICING ligase RtcB|Methanococcus maripaludis (strain DSM 14266

Query: 2 GIISPGQPG 10
G+ISPG G
Sbjct: 85 GVISPGGVG 93


>sp|SYE_NATPD|GLUTAMATE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PGIISP 6
PGIISP
Sbjct: 52 PGIISP 57


>sp|SUCD_METTH|SUCCINATE--COA ligase [ADP-forming] subunit alpha|Methanothermobacter

Query: 1 PGIISPG 7
PGII+PG
Sbjct: 128 PGIITPG 134


>sp|RTCB_PYRFU|TRNA-SPLICING ligase RtcB|Pyrococcus furiosus (strain ATCC 43587

Query: 2 GIISPGQPG 10
G+ISPG G
Sbjct: 93 GVISPGGIG 101


>sp|RTCB_PYRAB|TRNA-SPLICING ligase RtcB|Pyrococcus abyssi (strain GE5 /

Query: 2 GIISPGQPG 10
G+ISPG G
Sbjct: 85 GVISPGGIG 93


>sp|RTCB_METKA|TRNA-SPLICING ligase RtcB|Methanopyrus kandleri (strain AV19 /

Query: 2 GIISPGQPG 10
G++SPG G
Sbjct: 88 GVVSPGGVG 96


>sp|RTCB_PYRHO|TRNA-SPLICING ligase RtcB|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GIISPGQPG 10
G+ISPG G
Sbjct: 85 GVISPGGIG 93


>sp|IF2P_HYPBU|PROBABLE translation initiation factor IF-2|Hyperthermus butylicus (strain

Query: 2 GIISPGQP 9
G+I PG P
Sbjct: 500 GVIKPGYP 507


>sp|RTCB_THEKO|TRNA-SPLICING ligase RtcB|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 GIISPGQPG 10
G+ISPG G
Sbjct: 87 GVISPGGVG 95


>sp|IF2P_STAMF|PROBABLE translation initiation factor IF-2|Staphylothermus marinus (strain

Query: 2 GIISPGQP 9
G+I PG P
Sbjct: 500 GVIKPGYP 507


>sp|IF2P_AERPE|PROBABLE translation initiation factor IF-2|Aeropyrum pernix (strain ATCC

Query: 2 GIISPGQP 9
G+I PG P
Sbjct: 502 GVIRPGYP 509


>sp|SLAA_METS5|S-LAYER protein A|Metallosphaera sedula (strain ATCC 51363

Query: 1 PGIISPGQPG 10
P + +PG PG
Sbjct: 1192 PTVYTPGTPG 1201


>sp|RTCB_METTH|TRNA-SPLICING ligase RtcB|Methanothermobacter thermautotrophicus (strain ATCC

Query: 2 GIISPGQPG 10
G+ISPG G
Sbjct: 87 GVISPGGVG 95


>sp|RPO1N_SACSH|DNA-DIRECTED RNA polymerase subunit Rpo1N|Saccharolobus shibatae (strain ATCC

Query: 2 GIISPGQ 8
G+I PGQ
Sbjct: 50 GVIEPGQ 56


>sp|RPO1N_SACS2|DNA-DIRECTED RNA polymerase subunit Rpo1N|Saccharolobus solfataricus (strain

Query: 2 GIISPGQ 8
G+I PGQ
Sbjct: 50 GVIEPGQ 56




106|SequenceR|535|526|GPPGPPGIIS

>sp|TRMY_METM5|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanococcus

Query: 1 GPPGPP 6
GPP PP
Sbjct: 58 GPPNPP 63


>sp|Y1441_METJA|UNCHARACTERIZED protein MJ1441|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PGPPGIIS 10
PGP G+I+
Sbjct: 790 PGPSGLIT 797


>sp|TRMY_PYRHO|TRNA (pseudouridine(54)-N(1))-methyltransferase|Pyrococcus horikoshii

Query: 1 GPPGPPGII 9
GPP PP I
Sbjct: 58 GPPSPPKTI 66


>sp|PCNA_METMJ|DNA polymerase sliding clamp|Methanoculleus marisnigri (strain ATCC

Query: 3 PGPPGI 8
P PPGI
Sbjct: 120 PNPPGI 125


>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 1 GPPGPPGI 8
GP GP GI
Sbjct: 217 GPMGPTGI 224


>sp|RFCL_PYRNV|REPLICATION factor C large subunit|Pyrobaculum neutrophilum (strain DSM 2338

Query: 4 GPPGI 8
GPPGI
Sbjct: 63 GPPGI 67


>sp|RFCL_PYRIL|REPLICATION factor C large subunit|Pyrobaculum islandicum (strain DSM 4184

Query: 4 GPPGI 8
GPPGI
Sbjct: 63 GPPGI 67


>sp|RFCL_METST|REPLICATION factor C large subunit|Methanosphaera stadtmanae (strain ATCC

Query: 4 GPPGI 8
GPPGI
Sbjct: 45 GPPGI 49


>sp|RFCL_METS3|REPLICATION factor C large subunit|Methanobrevibacter smithii (strain ATCC

Query: 4 GPPGI 8
GPPGI
Sbjct: 45 GPPGI 49


>sp|TRMY_THEON|TRNA (pseudouridine(54)-N(1))-methyltransferase|Thermococcus

Query: 1 GPPGPPGII 9
GPP PP I
Sbjct: 58 GPPNPPKAI 66


>sp|FAU1_HYPBU|PROBABLE ribonuclease FAU-1|Hyperthermus butylicus (strain DSM 5456

Query: 4 GPPGIIS 10
GPPG+ S
Sbjct: 240 GPPGVYS 246


>sp|TRMY_PYRAB|TRNA (pseudouridine(54)-N(1))-methyltransferase|Pyrococcus abyssi

Query: 1 GPPGPP 6
GPP PP
Sbjct: 58 GPPDPP 63


>sp|RNZ_THEVO|RIBONUCLEASE Z|Thermoplasma volcanium (strain ATCC 51530

Query: 1 GPPGPPGIIS 10
GP G GIIS
Sbjct: 93 GPRGAIGIIS 102


>sp|FLAB2_METVO|FLAGELLIN B2|Methanococcus voltae

Query: 4 GPPGIIS 10
G PGIIS
Sbjct: 193 GAPGIIS 199


>sp|AMT1_ARCFU|AMMONIUM transporter Amt1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GPPGPPGIIS 10
G PG GI+S
Sbjct: 242 GKPGSLGIVS 251


>sp|ACSA_PYRAE|ACETYL-COENZYME A synthetase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GPPGPPGI 8
G P PPG+
Sbjct: 470 GNPAPPGV 477


>sp|TRMY_THEGJ|TRNA (pseudouridine(54)-N(1))-methyltransferase|Thermococcus

Query: 1 GPPGPPGII 9
GPP PP I
Sbjct: 58 GPPEPPKAI 66


>sp|SLAA_METS5|S-LAYER protein A|Metallosphaera sedula (strain ATCC 51363

Query: 3 PGPPGIIS 10
PG PG+IS
Sbjct: 1197 PGTPGVIS 1204


>sp|FLAB2_METVS|FLAGELLIN B2|Methanococcus vannielii (strain ATCC 35089

Query: 4 GPPGIIS 10
G PGIIS
Sbjct: 199 GAPGIIS 205


>sp|EF2_AERPE|ELONGATION factor 2|Aeropyrum pernix (strain ATCC 700893

Query: 2 PPGPPGI 8
PP PP I
Sbjct: 724 PPSPPKI 730


>sp|DNAJ_HALSA|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 700922

Query: 1 GPPGPPG 7
G PG PG
Sbjct: 257 GAPGEPG 263


>sp|DNAJ_HALS3|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 29341

Query: 1 GPPGPPG 7
G PG PG
Sbjct: 257 GAPGEPG 263


>sp|Y620_PYRFU|UPF0251 protein PF0620|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GPPGPPGIIS 10
GPP PP I++
Sbjct: 32 GPPKPPIIMT 41


>sp|PPSA_METTH|PROBABLE phosphoenolpyruvate synthase|Methanothermobacter

Query: 1 GPPGPPGII 9
G P PPG +
Sbjct: 61 GIPVPPGFV 69


>sp|FLA1_THEVO|FLAGELLIN B1|Thermoplasma volcanium (strain ATCC 51530

Query: 1 GPPGPPGII 9
P G PG+I
Sbjct: 223 APVGSPGVI 231


>sp|Y803_PYRHO|UPF0251 protein PH0803|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GPPGPPGIIS 10
GPP PP I++
Sbjct: 35 GPPKPPIIMT 44


>sp|HAH4_HALMT|HALOCIN-H4 mediterranei (strain ATCC 33500

Query: 1 GPPGPPG 7
PPGP G
Sbjct: 49 APPGPNG 55


>sp|CREN7_PYRCJ|CHROMATIN protein Cren7|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 PPGPPGII 9
PPG PG+I
Sbjct: 35 PPGKPGVI 42


>sp|PPSA_AERPE|PHOSPHOENOLPYRUVATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 1 GPPGPPGII 9
G P PPG +
Sbjct: 34 GIPVPPGFV 42




107|SequenceR|540|531|PPGHPGPPGP

>sp|AGLB_METJA|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PPGHPGPPGP 10
PPGHP P P
Sbjct: 112 PPGHPLPWEP 121


>sp|Y759_ARCFU|UNCHARACTERIZED protein AF_0759|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PPGHPGPPGP 10
PPG G P P
Sbjct: 99 PPGLQGNPNP 108


>sp|PYRG_METMA|CTP synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 PGHPGPP 8
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|PYRG_METAC|CTP synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 PGHPGPP 8
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|PYRG_METBU|CTP synthase|Methanococcoides burtonii (strain DSM 6242

Query: 2 PGHPGPP 8
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|PYRG_METBF|CTP synthase|Methanosarcina barkeri (strain Fusaro /

Query: 2 PGHPGPP 8
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|CSD_PYRAB|PROBABLE cysteine desulfurase|Pyrococcus abyssi (strain GE5 /

Query: 3 GHPGPPGP 10
GH GP GP
Sbjct: 214 GHKGPMGP 221


>sp|RTCB_AERPE|TRNA-SPLICING ligase RtcB|Aeropyrum pernix (strain ATCC 700893

Query: 1 PPGHPGPP 8
PPGHP P
Sbjct: 359 PPGHPEIP 366


>sp|RS4_IGNH4|SMALL ribosomal subunit protein uS4|Ignicoccus hospitalis (strain

Query: 1 PPGHP 5
PPGHP
Sbjct: 13 PPGHP 17


>sp|RS3A_AERPE|SMALL ribosomal subunit protein eS1|Aeropyrum pernix (strain ATCC 700893

Query: 5 PGPPGP 10
PGP GP
Sbjct: 195 PGPNGP 200


>sp|KAE1B_METST|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 3 GHPGPP 8
GHPG P
Sbjct: 170 GHPGGP 175


>sp|FPOD_METMA|F(420)H(2) dehydrogenase subunit D|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 PGHPGPPGP 10
P HP PGP
Sbjct: 16 PQHPMQPGP 24


>sp|GSA_METJA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 GHPGPPG 9
GHP PG
Sbjct: 162 GHPNSPG 168


>sp|Y520_METJA|PUTATIVE NADH-ubiquinone oxidoreductase MJ0520|Methanocaldococcus

Query: 3 GHPGPP 8
G PGPP
Sbjct: 38 GRPGPP 43


>sp|RS24_PYRHO|SMALL ribosomal subunit protein eS24|Pyrococcus horikoshii (strain ATCC

Query: 4 HPGPPGP 10
HPG P P
Sbjct: 25 HPGEPTP 31


>sp|RS24_PYRAB|SMALL ribosomal subunit protein eS24|Pyrococcus abyssi (strain GE5 /

Query: 4 HPGPPGP 10
HPG P P
Sbjct: 25 HPGEPTP 31


>sp|KAE1B_METS3|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 3 GHPGPP 8
GHPG P
Sbjct: 173 GHPGGP 178


>sp|RS24_PYRFU|SMALL ribosomal subunit protein eS24|Pyrococcus furiosus (strain ATCC

Query: 4 HPGPPGP 10
HPG P P
Sbjct: 25 HPGEPTP 31


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 PPGHPG 6
P GHPG
Sbjct: 441 PEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 PPGHPG 6
P GHPG
Sbjct: 441 PEGHPG 446


>sp|PYRG_METTP|CTP synthase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 PGHPGPP 8
PG P PP
Sbjct: 514 PGRPSPP 520


>sp|FAU1_IGNH4|PROBABLE ribonuclease FAU-1|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 GHPGPPGP 10
GH G P P
Sbjct: 39 GHEGSPEP 46


>sp|RRP42_METAC|EXOSOME complex component Rrp42|Methanosarcina acetivorans (strain ATCC

Query: 1 PPGHPGPP 8
P PGPP
Sbjct: 93 PEFEPGPP 100


>sp|SYM_PYRAR|METHIONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 PPGHPGP 7
PPG P P
Sbjct: 410 PPGKPSP 416


>sp|CBID_PYRAE|COBALT-PRECORRIN-5B C(1)-methyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 PGHPGPPG 9
PG P PPG
Sbjct: 103 PGLPVPPG 110


>sp|CAS1_THEPD|CRISPR-ASSOCIATED endonuclease Cas1|Thermofilum pendens (strain DSM 2475

Query: 2 PGHPGP 7
PGHP P
Sbjct: 183 PGHPDP 188


>sp|DTDA_METS5|D-AMINOACYL-TRNA deacylase|Metallosphaera sedula (strain ATCC 51363

Query: 4 HPGPPG 9
HPG PG
Sbjct: 61 HPGNPG 66


>sp|DTDA_HYPBU|D-AMINOACYL-TRNA deacylase|Hyperthermus butylicus (strain DSM 5456

Query: 3 GHPGPPGP 10
G+PGP P
Sbjct: 89 GNPGPEAP 96


>sp|RRP42_METKA|EXOSOME complex component Rrp42|Methanopyrus kandleri (strain AV19 /

Query: 1 PPGHPGPP 8
P PGPP
Sbjct: 91 PSFEPGPP 98


>sp|OTC_METTH|ORNITHINE carbamoyltransferase|Methanothermobacter thermautotrophicus (strain

Query: 1 PPGHPGPPG 9
PPG+ PG
Sbjct: 175 PPGYEPDPG 183


>sp|PYRG_METKA|CTP synthase|Methanopyrus kandleri (strain AV19 /

Query: 2 PGHPGPP 8
PG P PP
Sbjct: 515 PGDPSPP 521


>sp|RS6E_PYRCJ|SMALL ribosomal subunit protein eS6|Pyrobaculum calidifontis (strain

Query: 2 PGHPGPPGP 10
P HPG PGP
Sbjct: 67 PMHPGVPGP 75


>sp|RRP42_METMA|EXOSOME complex component Rrp42|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PPGHPGPP 8
P PGPP
Sbjct: 93 PEFEPGPP 100


>sp|RS6E_PYRNV|SMALL ribosomal subunit protein eS6|Pyrobaculum neutrophilum (strain

Query: 2 PGHPGPPGP 10
P HPG PGP
Sbjct: 67 PMHPGIPGP 75


>sp|RS6E_PYRIL|SMALL ribosomal subunit protein eS6|Pyrobaculum islandicum (strain DSM

Query: 2 PGHPGPPGP 10
P HPG PGP
Sbjct: 67 PMHPGVPGP 75


>sp|SYFB_THEPD|PHENYLALANINE--TRNA ligase beta subunit|Thermofilum pendens (strain DSM 2475

Query: 1 PPGHPGPPGP 10
PP HPG P
Sbjct: 349 PPLHPGREDP 358


>sp|GCH32_HALSA|GTP cyclohydrolase III 2|Halobacterium salinarum (strain ATCC 700922

Query: 1 PPGHPGPPG 9
PPG G PG
Sbjct: 122 PPGFAGTPG 130


>sp|RS6E_PYRAE|SMALL ribosomal subunit protein eS6|Pyrobaculum aerophilum (strain ATCC

Query: 2 PGHPGPPGP 10
P HPG PGP
Sbjct: 67 PMHPGVPGP 75


>sp|DNAJ_HALSA|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 700922

Query: 2 PGHPGPP 8
PG PG P
Sbjct: 259 PGEPGAP 265


>sp|DNAJ_HALS3|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 29341

Query: 2 PGHPGPP 8
PG PG P
Sbjct: 259 PGEPGAP 265


>sp|DP2L_NATPD|DNA polymerase II large subunit|Natronomonas pharaonis (strain ATCC

Query: 3 GHPGPPG 9
GHP PG
Sbjct: 345 GHPSEPG 351


>sp|Y1914_METTH|UPF0425 pyridoxal phosphate-dependent protein MTH_1914|Methanothermobacter

Query: 2 PGHPGPPG 9
P HP PG
Sbjct: 109 PSHPSVPG 116


>sp|KAE1B_METTH|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 3 GHPGPP 8
GHPG P
Sbjct: 170 GHPGGP 175


>sp|RL4_SULTO|LARGE ribosomal subunit protein uL4|Sulfurisphaera tokodaii (strain DSM

Query: 1 PPGHPG 6
P GHPG
Sbjct: 238 PGGHPG 243


>sp|RRP42_PYRFU|EXOSOME complex component Rrp42|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PPGHPGPP 8
P PGPP
Sbjct: 92 PTFEPGPP 99


>sp|AGLQ_HALVD|ARCHAEAL glycosylation protein Q|Haloferax volcanii (strain ATCC 29605

Query: 1 PPGHPGP 7
P GH GP
Sbjct: 26 PAGHNGP 32


>sp|Y038_PYRAB|UPF0284 protein PYRAB00380|Pyrococcus abyssi (strain GE5 /

Query: 1 PPGHPGP 7
P GHP P
Sbjct: 56 PEGHPTP 62


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 GHPGPPG 9
G+PGP G
Sbjct: 185 GYPGPEG 191


>sp|RRP42_THEON|EXOSOME complex component Rrp42|Thermococcus onnurineus (strain NA1)

Query: 1 PPGHPGPP 8
P PGPP
Sbjct: 92 PSFEPGPP 99


>sp|Y811_METTH|UPF0305 protein MTH_811|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 PPGHPGPPG 9
PPG P P G
Sbjct: 110 PPGTPFPGG 118


>sp|RRP42_ARCFU|EXOSOME complex component Rrp42|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PPGHPGPP 8
P PGPP
Sbjct: 91 PTFEPGPP 98


>sp|MALA_HALJT|ALPHA-AMYLASE MalA|Haloarcula japonica (strain ATCC 49778

Query: 4 HPGPP 8
HPGPP
Sbjct: 3 HPGPP 7


>sp|RRP42_THEGJ|EXOSOME complex component Rrp42|Thermococcus gammatolerans (strain DSM

Query: 1 PPGHPGPP 8
P PGPP
Sbjct: 92 PTFEPGPP 99


>sp|RTCB_THEKO|TRNA-SPLICING ligase RtcB|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PPGHPGPP 8
P GHP P
Sbjct: 359 PAGHPDVP 366


>sp|RNJ_PYRAB|RIBONUCLEASE J|Pyrococcus abyssi (strain GE5 /

Query: 3 GHPGPPG 9
GH G PG
Sbjct: 323 GHQGEPG 329


>sp|RRP42_THEKO|EXOSOME complex component Rrp42|Thermococcus kodakarensis (strain ATCC

Query: 1 PPGHPGPP 8
P PGPP
Sbjct: 92 PTFEPGPP 99


>sp|RL4_SULAC|LARGE ribosomal subunit protein uL4|Sulfolobus acidocaldarius (strain

Query: 1 PPGHPG 6
P GHPG
Sbjct: 238 PGGHPG 243




108|SequenceR|545|536|PGMPGPPGHP

>sp|AGLB_METJA|DOLICHYL-PHOSPHOOLIGOSACCHARIDE-PROTEIN glycotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 GPPGHP 10
PPGHP
Sbjct: 111 APPGHP 116


>sp|HOSA_SULTO|HOMOCITRATE synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 GMPGPPGHP 10
G+P PP +P
Sbjct: 269 GIPMPPNYP 277


>sp|HOSA_SACS2|HOMOCITRATE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GMPGPPGHP 10
G+P PP +P
Sbjct: 270 GIPMPPNYP 278


>sp|HOSA_SACI7|HOMOCITRATE synthase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 2 GMPGPPGHP 10
G+P PP +P
Sbjct: 270 GIPMPPNYP 278


>sp|HOSA_SACI6|HOMOCITRATE synthase|Saccharolobus islandicus (strain M.16.4 /

Query: 2 GMPGPPGHP 10
G+P PP +P
Sbjct: 270 GIPMPPNYP 278


>sp|HOSA_SACI4|HOMOCITRATE synthase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 GMPGPPGHP 10
G+P PP +P
Sbjct: 270 GIPMPPNYP 278


>sp|HOSA_SACI3|HOMOCITRATE synthase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 2 GMPGPPGHP 10
G+P PP +P
Sbjct: 270 GIPMPPNYP 278


>sp|HOSA_SACI2|HOMOCITRATE synthase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 2 GMPGPPGHP 10
G+P PP +P
Sbjct: 270 GIPMPPNYP 278


>sp|HOSA_SACI1|HOMOCITRATE synthase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 2 GMPGPPGHP 10
G+P PP +P
Sbjct: 270 GIPMPPNYP 278


>sp|SYA_PICTO|ALANINE--TRNA ligase|Picrophilus torridus (strain ATCC 700027

Query: 2 GMPGPPGHP 10
G+ PPG+P
Sbjct: 108 GLAKPPGNP 116


>sp|CBID_PYRAE|COBALT-PRECORRIN-5B C(1)-methyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 PGMPGPPG 8
PG+P PPG
Sbjct: 103 PGLPVPPG 110


>sp|Y1209_PYRHO|UNCHARACTERIZED protein PH1209|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PGMPGPPGH 9
P +PG PG+
Sbjct: 15 PPLPGSPGY 23


>sp|TFE_PYRFU|TRANSCRIPTION factor E|Pyrococcus furiosus (strain ATCC 43587

Query: 5 GPPGHP 10
G PGHP
Sbjct: 119 GTPGHP 124


>sp|FTHS_THEAC|FORMATE--TETRAHYDROFOLATE ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 MPGPPGHP 10
MPG P HP
Sbjct: 512 MPGLPKHP 519


>sp|RS4_IGNH4|SMALL ribosomal subunit protein uS4|Ignicoccus hospitalis (strain

Query: 6 PPGHP 10
PPGHP
Sbjct: 13 PPGHP 17


>sp|PYRG_METMA|CTP synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PGMPGPP 7
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|PYRG_METAC|CTP synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PGMPGPP 7
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|LEU1_ARCFU|PROBABLE 2-isopropylmalate synthase|Archaeoglobus fulgidus (strain ATCC

Query: 2 GMPGPPGHP 10
G+ PP HP
Sbjct: 270 GVKMPPNHP 278


>sp|Y274_PYRHO|PUTATIVE GTPase PH0274|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GMPGPPG 8
G+ GPPG
Sbjct: 51 GITGPPG 57


>sp|Y249_PYRAB|PUTATIVE GTPase PYRAB02490|Pyrococcus abyssi (strain GE5 /

Query: 2 GMPGPPG 8
G+ GPPG
Sbjct: 49 GITGPPG 55


>sp|PYRG_METBU|CTP synthase|Methanococcoides burtonii (strain DSM 6242

Query: 1 PGMPGPP 7
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|DNAJ_HALSA|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 700922

Query: 2 GMPGPPGHP 10
G PG PG P
Sbjct: 257 GAPGEPGAP 265


Query: 1 PGMPGPP 7
PG PG P
Sbjct: 259 PGEPGAP 265


>sp|DNAJ_HALS3|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 29341

Query: 2 GMPGPPGHP 10
G PG PG P
Sbjct: 257 GAPGEPGAP 265


Query: 1 PGMPGPP 7
PG PG P
Sbjct: 259 PGEPGAP 265


>sp|PYRG_METBF|CTP synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 PGMPGPP 7
PG P PP
Sbjct: 510 PGRPSPP 516


>sp|Y830_PYRAE|PROTEIN PAE0830|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 GMPGPPGHP 10
G+P P HP
Sbjct: 20 GLPVPESHP 28


>sp|Y1232_METJA|UNCHARACTERIZED protein MJ1232|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GMPGPPG 8
G+PGP G
Sbjct: 56 GVPGPKG 62


>sp|SYA_THEVO|ALANINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 GMPGPPGHP 10
G+ PPG+P
Sbjct: 111 GIVKPPGNP 119


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 5 GPPGHP 10
GP GHP
Sbjct: 440 GPEGHP 445


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 5 GPPGHP 10
GP GHP
Sbjct: 440 GPEGHP 445


>sp|ELP3_METIM|TRNA uridine(34) acetyltransferase|Methanocaldococcus infernus (strain

Query: 1 PGMPG 5
PGMPG
Sbjct: 273 PGMPG 277


>sp|HIS1_METJA|ATP phosphoribosyltransferase|Methanocaldococcus jannaschii (strain

Query: 1 PGMPGP 6
PGM GP
Sbjct: 236 PGMAGP 241


>sp|HIS1_META3|ATP phosphoribosyltransferase|Methanococcus aeolicus (strain ATCC

Query: 1 PGMPGP 6
PGM GP
Sbjct: 236 PGMSGP 241


>sp|PPSA_PYRHO|PROBABLE phosphoenolpyruvate synthase|Pyrococcus horikoshii (strain ATCC

Query: 2 GMPGPPG 8
G+P PPG
Sbjct: 37 GIPVPPG 43


>sp|ELP3_METJA|TRNA uridine(34) acetyltransferase|Methanocaldococcus jannaschii (strain

Query: 1 PGMPG 5
PGMPG
Sbjct: 279 PGMPG 283


>sp|HIS1_METMA|ATP phosphoribosyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PGMPGP 6
PGM GP
Sbjct: 232 PGMSGP 237


>sp|SYA_THEAC|ALANINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 GMPGPPGHP 10
G+ PPG+P
Sbjct: 111 GIVRPPGNP 119


>sp|PPSA_PYRAB|PROBABLE phosphoenolpyruvate synthase|Pyrococcus abyssi (strain GE5 /

Query: 2 GMPGPPG 8
G+P PPG
Sbjct: 34 GIPVPPG 40


>sp|LEU1_IGNH4|PROBABLE 2-isopropylmalate synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 GMPGPPGHP 10
G+P PP P
Sbjct: 283 GIPIPPNKP 291


>sp|CARB_PYRAE|CARBAMOYL phosphate synthase large chain|Pyrobaculum aerophilum (strain ATCC

Query: 2 GMPGPPGHP 10
G+P PP P
Sbjct: 136 GIPVPPSSP 144


>sp|RPO2N_METJA|DNA-DIRECTED RNA polymerase subunit Rpo2N|Methanocaldococcus jannaschii (strain

Query: 1 PGMPG 5
PGMPG
Sbjct: 214 PGMPG 218


>sp|PPSA_PYRFU|PHOSPHOENOLPYRUVATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 GMPGPPG 8
G+P PPG
Sbjct: 34 GIPVPPG 40


>sp|AATA_THEVO|A-TYPE ATP synthase subunit A|Thermoplasma volcanium (strain ATCC 51530

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 531 MPGEEGYP 538


>sp|Y520_METJA|PUTATIVE NADH-ubiquinone oxidoreductase MJ0520|Methanocaldococcus

Query: 2 GMPGPP 7
G PGPP
Sbjct: 38 GRPGPP 43


>sp|VHTG_METMA|F420 non-reducing hydrogenase II small|Methanosarcina mazei (strain ATCC

Query: 3 MPGPPGHP 10
+PG P HP
Sbjct: 224 IPGCPAHP 231


>sp|HIS1_METAC|ATP phosphoribosyltransferase|Methanosarcina acetivorans (strain ATCC

Query: 1 PGMPGP 6
PGM GP
Sbjct: 232 PGMSGP 237


>sp|CBID_METTH|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanothermobacter thermautotrophicus

Query: 1 PGMPGPPG 8
PG+ PPG
Sbjct: 104 PGLQVPPG 111


>sp|HIS1_METTH|ATP phosphoribosyltransferase|Methanothermobacter thermautotrophicus

Query: 1 PGMPGP 6
PGM GP
Sbjct: 234 PGMTGP 239


>sp|PRIS_SACS2|DNA primase small subunit PriS|Saccharolobus solfataricus (strain ATCC

Query: 2 GMPGPPG 8
G+PG PG
Sbjct: 207 GVPGYPG 213


>sp|AATA_THEAC|A-TYPE ATP synthase subunit A|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 519 MPGEEGYP 526


>sp|AATA_PYRAB|A-TYPE ATP synthase subunit A|Pyrococcus abyssi (strain GE5 /

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 779 MPGEEGYP 786


>sp|PPSA_STAMF|PROBABLE phosphoenolpyruvate synthase|Staphylothermus marinus (strain ATCC

Query: 2 GMPGPPG 8
G+P PPG
Sbjct: 39 GIPVPPG 45


>sp|PPSA_METTH|PROBABLE phosphoenolpyruvate synthase|Methanothermobacter

Query: 2 GMPGPPG 8
G+P PPG
Sbjct: 61 GIPVPPG 67


>sp|CARB_HYPBU|CARBAMOYL phosphate synthase large chain|Hyperthermus butylicus (strain DSM

Query: 2 GMPGPPGHP 10
G+P PP P
Sbjct: 140 GLPVPPSTP 148


>sp|PPSA_AERPE|PHOSPHOENOLPYRUVATE synthase|Aeropyrum pernix (strain ATCC 700893

Query: 2 GMPGPPG 8
G+P PPG
Sbjct: 34 GIPVPPG 40


>sp|PURL_PYRAE|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrobaculum aerophilum (strain ATCC 51768

Query: 5 GPPGHP 10
GPP HP
Sbjct: 120 GPPSHP 125


>sp|HIS1_METBF|ATP phosphoribosyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 1 PGMPGP 6
PGM GP
Sbjct: 232 PGMSGP 237


>sp|GGR3_METST|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 3|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 GMPGPPGH 9
G GP GH
Sbjct: 157 GADGPEGH 164


>sp|GSA_METST|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 GMPGPPGHP 10
G+P PG P
Sbjct: 158 GLPDSPGIP 166


>sp|AATA_PYRFU|A-TYPE ATP synthase subunit A|Pyrococcus furiosus (strain ATCC 43587

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 775 MPGEEGYP 782


>sp|IDH_ARCFU|ISOCITRATE dehydrogenase [NADP]|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GMPGPPGHP 10
G+P P HP
Sbjct: 132 GVPSPIKHP 140


>sp|AATA_PYRHO|A-TYPE ATP synthase subunit A|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 726 MPGEEGYP 733


>sp|AATA_METM5|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C5 /

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 348 MPGEEGYP 355


>sp|AATA_METST|A-TYPE ATP synthase subunit A|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 348 MPGEEGYP 355


>sp|AATA_METMP|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain DSM 14266

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 348 MPGEEGYP 355


>sp|AATA_METM7|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C7 /

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 348 MPGEEGYP 355


>sp|AATA_METM6|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C6 /

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 348 MPGEEGYP 355


>sp|AATA_METS3|A-TYPE ATP synthase subunit A|Methanobrevibacter smithii (strain ATCC

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 349 MPGEEGYP 356


>sp|AATA2_METHJ|A-TYPE ATP synthase subunit A|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 343 MPGEEGYP 350


>sp|AATA_METAR|A-TYPE ATP synthase subunit A|Methanocella arvoryzae (strain DSM 22066

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 345 MPGEEGYP 352


>sp|VHOG_METMA|F420 non-reducing hydrogenase I small|Methanosarcina mazei (strain ATCC

Query: 3 MPGPPGHP 10
+PG P HP
Sbjct: 224 IPGCPCHP 231


>sp|AATA_METKA|A-TYPE ATP synthase subunit A|Methanopyrus kandleri (strain AV19 /

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 352 MPGEEGYP 359


>sp|AATA1_METHJ|A-TYPE ATP synthase subunit A|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 347 MPGEEGYP 354


>sp|AATA_METB6|A-TYPE ATP synthase subunit A|Methanoregula boonei (strain DSM 21154

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 353 MPGEEGYP 360


>sp|AATA_ARCFU|A-TYPE ATP synthase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 350 MPGEEGYP 357


>sp|AATA_METVS|A-TYPE ATP synthase subunit A|Methanococcus vannielii (strain ATCC 35089

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 348 MPGEEGYP 355


>sp|AATA_METMA|A-TYPE ATP synthase subunit A|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 344 MPGEEGYP 351


>sp|AATA_HALMA|A-TYPE ATP synthase subunit A|Haloarcula marismortui (strain ATCC 43049

Query: 3 MPGPPGHP 10
MPG G+P
Sbjct: 354 MPGEEGYP 361




109|SequenceR|550|541|GPLGHPGMPG

>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 GPLGHPG 7
GP GHPG
Sbjct: 440 GPEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 GPLGHPG 7
GP GHPG
Sbjct: 440 GPEGHPG 446


>sp|ILVD_ARCFU|DIHYDROXY-ACID dehydratase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 430 GPKGAPGMP 438


>sp|TRPD_IGNH4|ANTHRANILATE phosphoribosyltransferase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 GPLGHPGMPG 10
GPL +P PG
Sbjct: 179 GPLSNPARPG 188


>sp|THS_PYRHO|THERMOSOME subunit|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THS_PYRAB|THERMOSOME subunit|Pyrococcus abyssi (strain GE5 /

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THS_METKA|THERMOSOME subunit|Methanopyrus kandleri (strain AV19 /

Query: 5 HPGMP 9
HPGMP
Sbjct: 229 HPGMP 233


>sp|THS_DESSY|THERMOSOME subunit|Desulfurococcus sp. (strain SY)

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THSB_THEKO|CHAPERONIN subunit beta|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THSB_THEK1|CHAPERONIN subunit beta|Thermococcus sp. (strain JCM 11816

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THSB_THEAC|THERMOSOME subunit beta|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 HPGMP 9
HPGMP
Sbjct: 225 HPGMP 229


>sp|THSB_SULTO|CHAPERONIN subunit beta|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 HPGMP 9
HPGMP
Sbjct: 234 HPGMP 238


>sp|THSB_SULAC|CHAPERONIN subunit beta|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 5 HPGMP 9
HPGMP
Sbjct: 234 HPGMP 238


>sp|THSB_SACSH|CHAPERONIN subunit beta|Saccharolobus shibatae (strain ATCC 51178

Query: 5 HPGMP 9
HPGMP
Sbjct: 233 HPGMP 237


>sp|THSB_SACS2|CHAPERONIN subunit beta|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 HPGMP 9
HPGMP
Sbjct: 233 HPGMP 237


>sp|THSB_METTH|CHAPERONIN subunit beta|Methanothermobacter thermautotrophicus (strain ATCC

Query: 5 HPGMP 9
HPGMP
Sbjct: 220 HPGMP 224


>sp|THSB_DESM0|CHAPERONIN subunit beta|Desulfurococcus mucosus (strain ATCC 35584

Query: 5 HPGMP 9
HPGMP
Sbjct: 228 HPGMP 232


>sp|THSB_ARCFU|THERMOSOME subunit beta|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THSA_SULTO|CHAPERONIN subunit alpha|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 HPGMP 9
HPGMP
Sbjct: 233 HPGMP 237


>sp|THSA_SACSH|CHAPERONIN subunit alpha|Saccharolobus shibatae (strain ATCC 51178

Query: 5 HPGMP 9
HPGMP
Sbjct: 232 HPGMP 236


>sp|THSA_SACS2|CHAPERONIN subunit alpha|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 HPGMP 9
HPGMP
Sbjct: 232 HPGMP 236


>sp|THSA_ARCFU|THERMOSOME subunit alpha|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|ILVD_PYRNV|DIHYDROXY-ACID dehydratase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 439 GPKGAPGMP 447


>sp|ILVD_PYRIL|DIHYDROXY-ACID dehydratase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 439 GPKGAPGMP 447


>sp|ILVD_PYRAR|DIHYDROXY-ACID dehydratase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 439 GPKGAPGMP 447


>sp|ILVD_PYRCJ|DIHYDROXY-ACID dehydratase|Pyrobaculum calidifontis (strain DSM 21063

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 439 GPKGAPGMP 447


>sp|ELP3_METIM|TRNA uridine(34) acetyltransferase|Methanocaldococcus infernus (strain

Query: 6 PGMPG 10
PGMPG
Sbjct: 273 PGMPG 277


>sp|DTDA_METS5|D-AMINOACYL-TRNA deacylase|Metallosphaera sedula (strain ATCC 51363

Query: 5 HPGMPG 10
HPG PG
Sbjct: 61 HPGNPG 66


>sp|ELP3_METJA|TRNA uridine(34) acetyltransferase|Methanocaldococcus jannaschii (strain

Query: 6 PGMPG 10
PGMPG
Sbjct: 279 PGMPG 283


>sp|GSA_METJA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 GHPGMPG 10
GHP PG
Sbjct: 162 GHPNSPG 168


>sp|TRPD_PYRIL|ANTHRANILATE phosphoribosyltransferase|Pyrobaculum islandicum (strain DSM 4184

Query: 1 GPLGHPGM 8
GPL +PG+
Sbjct: 177 GPLANPGL 184


>sp|TRPD_PYRAE|ANTHRANILATE phosphoribosyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GPLGHPGM 8
GPL +PG+
Sbjct: 179 GPLANPGL 186


>sp|RPO2N_METJA|DNA-DIRECTED RNA polymerase subunit Rpo2N|Methanocaldococcus jannaschii (strain

Query: 6 PGMPG 10
PGMPG
Sbjct: 214 PGMPG 218


>sp|ILVD_PYRAE|DIHYDROXY-ACID dehydratase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 439 GPKGAPGMP 447


>sp|ILVD_SACS2|DIHYDROXY-ACID dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI7|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI6|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.4 /

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI4|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.14.25 /

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI3|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI2|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_SACI1|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 438 GPKGAPGMP 446


>sp|ILVD_AERPE|DIHYDROXY-ACID dehydratase|Aeropyrum pernix (strain ATCC 700893

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 435 GPKGAPGMP 443


>sp|CDPAS_PYRAE|CDP-ARCHAEOL synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 PLGHPGMP 9
P GHP P
Sbjct: 104 PRGHPAFP 111


>sp|GATA_METS3|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanobrevibacter smithii (strain ATCC

Query: 1 GPLGHPGMPG 10
GP +P PG
Sbjct: 134 GPTQNPAAPG 143


>sp|DP2L_NATPD|DNA polymerase II large subunit|Natronomonas pharaonis (strain ATCC

Query: 3 LGHPGMPG 10
GHP PG
Sbjct: 344 FGHPSEPG 351


>sp|GATA_METST|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanosphaera stadtmanae (strain ATCC

Query: 1 GPLGHPGMPG 10
GP +P PG
Sbjct: 134 GPTNNPKAPG 143


>sp|Y1519_METJA|UNCHARACTERIZED protein MJ1519|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 HPGMPG 10
+PG+PG
Sbjct: 282 YPGLPG 287


>sp|TRPD_CALMQ|ANTHRANILATE phosphoribosyltransferase|Caldivirga maquilingensis (strain ATCC

Query: 1 GPLGHPGM 8
GPL +PG+
Sbjct: 178 GPLANPGL 185


>sp|SYFB_METKA|PHENYLALANINE--TRNA ligase beta subunit|Methanopyrus kandleri (strain AV19 /

Query: 2 PLGHPG 7
PL HPG
Sbjct: 169 PLDHPG 174


>sp|Y226_ARCFU|PUTATIVE NADH dehydrogenase/NAD(P)H nitroreductase AF_0226|Archaeoglobus

Query: 2 PLGHPG 7
P+GHP
Sbjct: 147 PIGHPA 152


>sp|TRPD_PYRAR|ANTHRANILATE phosphoribosyltransferase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 1 GPLGHPGM 8
GPL +PG+
Sbjct: 179 GPLANPGL 186


>sp|MUTL_METMJ|DNA mismatch repair protein MutL|Methanoculleus marisnigri (strain ATCC

Query: 2 PLGHPGMP 9
P+G PG P
Sbjct: 361 PVGEPGAP 368


>sp|RTCB_THEKO|TRNA-SPLICING ligase RtcB|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 PLGHPGMP 9
P GHP +P
Sbjct: 359 PAGHPDVP 366


>sp|ILVD_METST|DIHYDROXY-ACID dehydratase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 432 GPKGGPGM 439


>sp|Y378_NANEQ|UPF0173 metal-dependent hydrolase NEQ378|Nanoarchaeum equitans (strain

Query: 2 PLGHPG 7
PLG+PG
Sbjct: 109 PLGNPG 114


>sp|SYI_NATPD|ISOLEUCINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 GPLGHPG 7
G LG+PG
Sbjct: 541 GTLGYPG 547


>sp|ILVD_METB6|DIHYDROXY-ACID dehydratase|Methanoregula boonei (strain DSM 21154

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 433 GPRGGPGMP 441


>sp|FWDA_METJA|PROTEIN FwdA|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 LGHPG 7
LGHPG
Sbjct: 235 LGHPG 239


>sp|GGR_METLZ|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 GPLGH 5
GPLGH
Sbjct: 331 GPLGH 335


>sp|ILVD_PYRAB|DIHYDROXY-ACID dehydratase|Pyrococcus abyssi (strain GE5 /

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 432 GPKGGPGM 439


>sp|ILVD_METMJ|DIHYDROXY-ACID dehydratase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 430 GPRGGPGMP 438


>sp|ILVD_META3|DIHYDROXY-ACID dehydratase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 431 GPAGGPGM 438


>sp|ILVD_SULAC|DIHYDROXY-ACID dehydratase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 439 GPKGGPGMP 447


>sp|ILVD_PYRFU|DIHYDROXY-ACID dehydratase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 432 GPKGGPGM 439


>sp|ILVD_METKA|DIHYDROXY-ACID dehydratase|Methanopyrus kandleri (strain AV19 /

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 431 GPAGGPGM 438


>sp|SYG_AERPE|GLYCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 GPLGH 5
GPLGH
Sbjct: 36 GPLGH 40


>sp|ILVD_METMP|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain DSM 14266

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 431 GPSGGPGM 438


>sp|ILVD_METJA|DIHYDROXY-ACID dehydratase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 432 GPAGGPGM 439


>sp|GATA_METTH|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Methanothermobacter thermautotrophicus

Query: 1 GPLGHPGMPG 10
GP +P PG
Sbjct: 137 GPTDNPAAPG 146


>sp|ILVD_METM5|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C5 /

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 431 GPSGGPGM 438


>sp|ILVD_METHJ|DIHYDROXY-ACID dehydratase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 GPLGHPGMP 9
GP G PGMP
Sbjct: 430 GPKGGPGMP 438


>sp|ILVD_METVS|DIHYDROXY-ACID dehydratase|Methanococcus vannielii (strain ATCC 35089

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 431 GPSGGPGM 438


>sp|ILVD_METM7|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C7 /

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 431 GPSGGPGM 438


>sp|ILVD_METS3|DIHYDROXY-ACID dehydratase|Methanobrevibacter smithii (strain ATCC 35061

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 432 GPKGGPGM 439


>sp|NADK_HALMA|NAD kinase|Haloarcula marismortui (strain ATCC 43049

Query: 1 GPLGHPGMPG 10
GPL HP + G
Sbjct: 197 GPLVHPDVAG 206


>sp|ILVD_METM6|DIHYDROXY-ACID dehydratase|Methanococcus maripaludis (strain C6 /

Query: 1 GPLGHPGM 8
GP G PGM
Sbjct: 431 GPSGGPGM 438


>sp|NADK_HALLT|NAD kinase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 GPLGHPGMPG 10
GPL HP + G
Sbjct: 189 GPLVHPAVSG 198


>sp|RS6E_AERPE|SMALL ribosomal subunit protein eS6|Aeropyrum pernix (strain ATCC 700893

Query: 5 HPGMPG 10
HPG+PG
Sbjct: 172 HPGVPG 177




110|SequenceR|555|546|DTGKPGPLGH

>sp|Y1242_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 1 DTGKPGPLG 9
D KPGP+G
Sbjct: 359 DMTKPGPMG 367


>sp|GGR_METLZ|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 DTGKPGPLGH 10
+T + GPLGH
Sbjct: 326 NTWREGPLGH 335


>sp|PUR5_PYRHO|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 GKPGPLGH 10
G+PG +GH
Sbjct: 37 GEPGDIGH 44


>sp|PUR5_PYRFU|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 GKPGPLGH 10
G+PG +GH
Sbjct: 37 GEPGDIGH 44


>sp|AROA_CALMQ|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Caldivirga maquilingensis (strain ATCC

Query: 2 TGKPGPLGH 10
TG P PLG+
Sbjct: 246 TGLPKPLGY 254


>sp|DNLI_METMP|DNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 DTGKPGPL 8
D+GKP P
Sbjct: 308 DSGKPRPF 315


>sp|ILVB_METAO|PROBABLE acetolactate synthase large subunit|Methanococcus aeolicus

Query: 2 TGKPGPL 8
TG+PGP+
Sbjct: 147 TGRPGPV 153


>sp|PUR5_PYRAB|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Pyrococcus abyssi (strain GE5 /

Query: 3 GKPGPLGH 10
G+PG +GH
Sbjct: 37 GEPGDIGH 44


>sp|ILVB_METJA|PROBABLE acetolactate synthase large subunit|Methanocaldococcus jannaschii

Query: 2 TGKPGPL 8
TG+PGP+
Sbjct: 147 TGRPGPV 153


>sp|ACDD_METKA|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanopyrus kandleri

Query: 1 DTGKPGPL 8
D G PGP+
Sbjct: 134 DVGIPGPI 141


>sp|TRIC_SULTO|PUTATIVE Tricorn-like protease C-terminal subunit|Sulfurisphaera tokodaii

Query: 1 DTGKPGPLG 9
DT +P P+G
Sbjct: 548 DTAEPLPIG 556


>sp|CDPAS_METJA|CDP-ARCHAEOL synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 DTGKPGPL 8
+ GKP PL
Sbjct: 117 ERGKPAPL 124


>sp|DNLI_METKA|DNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 1 DTGKPGPL 8
+TGKP P
Sbjct: 307 ETGKPRPF 314


>sp|CARB_SULTO|CARBAMOYL phosphate synthase large chain|Sulfurisphaera tokodaii (strain DSM

Query: 1 DTGKPGPLG 9
D G+PG +G
Sbjct: 399 DIGEPGVVG 407


>sp|CARB_SACS2|CARBAMOYL phosphate synthase large chain|Saccharolobus solfataricus (strain

Query: 1 DTGKPGPLG 9
D G+PG +G
Sbjct: 399 DIGEPGVVG 407


>sp|CARB_SACI7|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 1 DTGKPGPLG 9
D G+PG +G
Sbjct: 399 DIGEPGVVG 407


>sp|CARB_SACI6|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 1 DTGKPGPLG 9
D G+PG +G
Sbjct: 399 DIGEPGVVG 407


>sp|CARB_SACI4|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 1 DTGKPGPLG 9
D G+PG +G
Sbjct: 399 DIGEPGVVG 407


>sp|CARB_SACI3|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 1 DTGKPGPLG 9
D G+PG +G
Sbjct: 399 DIGEPGVVG 407


>sp|CARB_SACI2|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 1 DTGKPGPLG 9
D G+PG +G
Sbjct: 399 DIGEPGVVG 407


>sp|CARB_SACI1|CARBAMOYL phosphate synthase large chain|Saccharolobus islandicus (strain

Query: 1 DTGKPGPLG 9
D G+PG +G
Sbjct: 399 DIGEPGVVG 407


>sp|CARB_SULAC|CARBAMOYL phosphate synthase large chain|Sulfolobus acidocaldarius (strain

Query: 1 DTGKPGPLG 9
D G+PG +G
Sbjct: 399 DLGEPGIIG 407


>sp|DTDA_HYPBU|D-AMINOACYL-TRNA deacylase|Hyperthermus butylicus (strain DSM 5456

Query: 2 TGKPGP 7
TG PGP
Sbjct: 88 TGNPGP 93


>sp|NTPTH_HYPBU|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Hyperthermus butylicus (strain DSM 5456

Query: 1 DTGKPG 6
D+GKPG
Sbjct: 125 DSGKPG 130


>sp|RL3_AERPE|LARGE ribosomal subunit protein uL3|Aeropyrum pernix (strain ATCC

Query: 1 DTGKPGPLG 9
D GKP PL
Sbjct: 36 DIGKPVPLA 44




111|SequenceR|560|551|PGMPGDTGKP

>sp|ALAXM_METMA|ALANYL-TRNA editing protein AlaX-M|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GMPGDTGK 9
G P DTGK
Sbjct: 41 GQPSDTGK 48


>sp|ALAXM_METBF|ALANYL-TRNA editing protein AlaX-M|Methanosarcina barkeri (strain Fusaro /

Query: 2 GMPGDTGK 9
G P DTGK
Sbjct: 41 GQPSDTGK 48


>sp|ALAXM_METAC|ALANYL-TRNA editing protein AlaX-M|Methanosarcina acetivorans (strain ATCC

Query: 2 GMPGDTGK 9
G P DTGK
Sbjct: 41 GQPSDTGK 48


>sp|ELP3_METIM|TRNA uridine(34) acetyltransferase|Methanocaldococcus infernus (strain

Query: 1 PGMPGDT 7
PGMPG +
Sbjct: 273 PGMPGSS 279


>sp|SYA_METHJ|ALANINE--TRNA ligase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 2 GMPGDTG 8
G PGDTG
Sbjct: 552 GQPGDTG 558


>sp|GSA_METM6|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus maripaludis (strain C6 /

Query: 1 PGMPGDTGK 9
PG+P DT K
Sbjct: 169 PGIPEDTTK 177


>sp|GSA_METM5|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus maripaludis (strain C5 /

Query: 1 PGMPGDTGK 9
PG+P DT K
Sbjct: 169 PGIPEDTTK 177


>sp|GSA_METM7|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus maripaludis (strain C7 /

Query: 1 PGMPGDTGK 9
PG+P DT K
Sbjct: 169 PGIPEDTTK 177


>sp|MER_METTM|5,10-METHYLENETETRAHYDROMETHANOPTERIN reductase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 2 GMPGDTGK 9
G+P DTGK
Sbjct: 240 GLPADTGK 247


>sp|GSA_META3|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 PGMPGDTGK 9
PG+P DT K
Sbjct: 172 PGIPEDTTK 180


>sp|GSA_METMP|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus maripaludis (strain DSM 14266

Query: 1 PGMPGDTGK 9
PG+P DT K
Sbjct: 169 PGIPEDTTK 177


>sp|GSA_METST|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 PGMPGDTGK 9
PG+P DT K
Sbjct: 163 PGIPTDTTK 171


>sp|GSA_METVS|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus vannielii (strain ATCC 35089

Query: 1 PGMPGDTGK 9
PG+P DT K
Sbjct: 169 PGIPEDTTK 177


>sp|ELP3_METJA|TRNA uridine(34) acetyltransferase|Methanocaldococcus jannaschii (strain

Query: 1 PGMPG 5
PGMPG
Sbjct: 279 PGMPG 283


>sp|RS3_AERPE|SMALL ribosomal subunit protein uS3|Aeropyrum pernix (strain ATCC 700893

Query: 1 PGMPGD 6
PG PGD
Sbjct: 187 PGKPGD 192


>sp|RPO2N_METJA|DNA-DIRECTED RNA polymerase subunit Rpo2N|Methanocaldococcus jannaschii (strain

Query: 1 PGMPG 5
PGMPG
Sbjct: 214 PGMPG 218


>sp|DNLI_HALSA|DNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 PGMPGDTGK 9
P PGD GK
Sbjct: 415 PYTPGDRGK 423


>sp|DNLI_HALS3|DNA ligase|Halobacterium salinarum (strain ATCC 29341

Query: 1 PGMPGDTGK 9
P PGD GK
Sbjct: 415 PYTPGDRGK 423


>sp|CBID_SULAC|COBALT-PRECORRIN-5B C(1)-methyltransferase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 PGMPGDTG 8
PG+ GD G
Sbjct: 112 PGLKGDVG 119


>sp|TRPD_PYRAE|ANTHRANILATE phosphoribosyltransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 PGDTGKP 10
PGD G P
Sbjct: 249 PGDLGAP 255


>sp|ALAXL_PYRHO|ALANYL-TRNA editing protein AlaX-L|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 GMPGDTG 8
G PGD G
Sbjct: 44 GQPGDRG 50


>sp|AATA_THEVO|A-TYPE ATP synthase subunit A|Thermoplasma volcanium (strain ATCC 51530

Query: 3 MPGDTGKP 10
MPG+ G P
Sbjct: 531 MPGEEGYP 538


>sp|HBCL1_METS5|4-HYDROXYBUTYRATE--COA ligase 1|Metallosphaera sedula (strain ATCC 51363

Query: 4 PGDTGKP 10
PG GKP
Sbjct: 364 PGSMGKP 370


>sp|AATA_THEAC|A-TYPE ATP synthase subunit A|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 MPGDTGKP 10
MPG+ G P
Sbjct: 519 MPGEEGYP 526


>sp|SYA_METTH|ALANINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 GMPGDTG 8
G P DTG
Sbjct: 530 GQPSDTG 536


>sp|AATA_PYRAB|A-TYPE ATP synthase subunit A|Pyrococcus abyssi (strain GE5 /

Query: 3 MPGDTGKP 10
MPG+ G P
Sbjct: 779 MPGEEGYP 786


>sp|DNLI_HALVD|DNA ligase|Haloferax volcanii (strain ATCC 29605

Query: 1 PGMPGDTGK 9
P PGD GK
Sbjct: 438 PYSPGDRGK 446


>sp|ABLA_METMA|L-LYSINE 2,3-aminomutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PGMPGDTG 8
PG+ DTG
Sbjct: 387 PGLKSDTG 394


>sp|GSA_IGNH4|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 GMPGDTGKP 10
G+PG G P
Sbjct: 159 GVPGSAGVP 167


>sp|EF2_NATPD|ELONGATION factor 2|Natronomonas pharaonis (strain ATCC 35678

Query: 2 GMPGDTGKP 10
G+P +TG+P
Sbjct: 455 GIPVNTGEP 463


>sp|EF2_HALMD|ELONGATION factor 2|Halomicrobium mukohataei (strain ATCC 700874

Query: 2 GMPGDTGKP 10
G+P +TG+P
Sbjct: 455 GIPVNTGEP 463


>sp|DHQS_METBF|3-DEHYDROQUINATE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 4 PGDTGK 9
PGD GK
Sbjct: 37 PGDVGK 42


>sp|AATA_PYRFU|A-TYPE ATP synthase subunit A|Pyrococcus furiosus (strain ATCC 43587

Query: 3 MPGDTGKP 10
MPG+ G P
Sbjct: 775 MPGEEGYP 782


>sp|AATA2_METHJ|A-TYPE ATP synthase subunit A|Methanospirillum hungatei JF-1 (strain ATCC

Query: 3 MPGDTGKP 10
MPG+ G P
Sbjct: 343 MPGEEGYP 350


>sp|SYA_PYRAR|ALANINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 GMPGDTG 8
G PGD G
Sbjct: 536 GQPGDVG 542


>sp|AATA_PYRHO|A-TYPE ATP synthase subunit A|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 MPGDTGKP 10
MPG+ G P
Sbjct: 726 MPGEEGYP 733


>sp|Y1659_ARCFU|UNCHARACTERIZED protein AF_1659|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PGMPGDTGK 9
PG PG+ GK
Sbjct: 61 PGEPGEDGK 69


>sp|EF2_HALMA|ELONGATION factor 2|Haloarcula marismortui (strain ATCC 43049

Query: 2 GMPGDTGKP 10
G+P +TG+P
Sbjct: 454 GIPINTGEP 462




112|SequenceR|565|556|GAPGHPGMPG

>sp|DNAJ_HALSA|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 700922

Query: 1 GAPGHPGMP 9
GAPG PG P
Sbjct: 257 GAPGEPGAP 265


>sp|DNAJ_HALS3|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 29341

Query: 1 GAPGHPGMP 9
GAPG PG P
Sbjct: 257 GAPGEPGAP 265


>sp|RS6E_PYRNV|SMALL ribosomal subunit protein eS6|Pyrobaculum neutrophilum (strain

Query: 1 GAPGHPGMPG 10
GAP HPG+PG
Sbjct: 65 GAPMHPGIPG 74


>sp|GSA_METM5|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus maripaludis (strain C5 /

Query: 1 GAPGHPGMP 9
GAP PG+P
Sbjct: 164 GAPNSPGIP 172


>sp|RS6E_PYRCJ|SMALL ribosomal subunit protein eS6|Pyrobaculum calidifontis (strain

Query: 1 GAPGHPGMPG 10
GAP HPG+PG
Sbjct: 65 GAPMHPGVPG 74


>sp|GSA_METM6|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus maripaludis (strain C6 /

Query: 1 GAPGHPGMP 9
GAP PG+P
Sbjct: 164 GAPNSPGIP 172


>sp|GSA_METM7|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus maripaludis (strain C7 /

Query: 1 GAPGHPGMP 9
GAP PG+P
Sbjct: 164 GAPNSPGIP 172


>sp|RS6E_PYRIL|SMALL ribosomal subunit protein eS6|Pyrobaculum islandicum (strain DSM

Query: 1 GAPGHPGMPG 10
GAP HPG+PG
Sbjct: 65 GAPMHPGVPG 74


>sp|RS6E_PYRAE|SMALL ribosomal subunit protein eS6|Pyrobaculum aerophilum (strain ATCC

Query: 1 GAPGHPGMPG 10
GAP HPG+PG
Sbjct: 65 GAPMHPGVPG 74


>sp|GSA_METMP|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus maripaludis (strain DSM 14266

Query: 1 GAPGHPGMP 9
GAP PG+P
Sbjct: 164 GAPNSPGIP 172


>sp|GSA_META3|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 GAPGHPGMP 9
GAP PG+P
Sbjct: 167 GAPNSPGIP 175


>sp|GSA_METVS|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcus vannielii (strain ATCC 35089

Query: 1 GAPGHPGMP 9
GAP PG+P
Sbjct: 164 GAPNSPGIP 172


>sp|RNZ_SULAC|RIBONUCLEASE Z|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 GAPGHPGMPG 10
GAP G+PG
Sbjct: 12 GAPNKRGLPG 21


>sp|TFE_PYRFU|TRANSCRIPTION factor E|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GAPGHPGM 8
G PGHP +
Sbjct: 119 GTPGHPKL 126


>sp|THS_PYRHO|THERMOSOME subunit|Pyrococcus horikoshii (strain ATCC 700860

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THS_PYRAB|THERMOSOME subunit|Pyrococcus abyssi (strain GE5 /

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THS_METKA|THERMOSOME subunit|Methanopyrus kandleri (strain AV19 /

Query: 5 HPGMP 9
HPGMP
Sbjct: 229 HPGMP 233


>sp|THS_DESSY|THERMOSOME subunit|Desulfurococcus sp. (strain SY)

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THSB_THEKO|CHAPERONIN subunit beta|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THSB_THEK1|CHAPERONIN subunit beta|Thermococcus sp. (strain JCM 11816

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THSB_THEAC|THERMOSOME subunit beta|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 HPGMP 9
HPGMP
Sbjct: 225 HPGMP 229


>sp|THSB_SULTO|CHAPERONIN subunit beta|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 HPGMP 9
HPGMP
Sbjct: 234 HPGMP 238


>sp|THSB_SULAC|CHAPERONIN subunit beta|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 5 HPGMP 9
HPGMP
Sbjct: 234 HPGMP 238


>sp|THSB_SACS2|CHAPERONIN subunit beta|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 HPGMP 9
HPGMP
Sbjct: 233 HPGMP 237


>sp|THSB_METTH|CHAPERONIN subunit beta|Methanothermobacter thermautotrophicus (strain ATCC

Query: 5 HPGMP 9
HPGMP
Sbjct: 220 HPGMP 224


>sp|THSB_DESM0|CHAPERONIN subunit beta|Desulfurococcus mucosus (strain ATCC 35584

Query: 5 HPGMP 9
HPGMP
Sbjct: 228 HPGMP 232


>sp|THSB_ARCFU|THERMOSOME subunit beta|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|THSA_SULTO|CHAPERONIN subunit alpha|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 HPGMP 9
HPGMP
Sbjct: 233 HPGMP 237


>sp|THSA_SACSH|CHAPERONIN subunit alpha|Saccharolobus shibatae (strain ATCC 51178

Query: 5 HPGMP 9
HPGMP
Sbjct: 232 HPGMP 236


>sp|THSA_SACS2|CHAPERONIN subunit alpha|Saccharolobus solfataricus (strain ATCC 35092

Query: 5 HPGMP 9
HPGMP
Sbjct: 232 HPGMP 236


>sp|THSA_ARCFU|THERMOSOME subunit alpha|Archaeoglobus fulgidus (strain ATCC 49558

Query: 5 HPGMP 9
HPGMP
Sbjct: 227 HPGMP 231


>sp|RS6E_AERPE|SMALL ribosomal subunit protein eS6|Aeropyrum pernix (strain ATCC 700893

Query: 1 GAPGHPGMPG 10
G P HPG+PG
Sbjct: 168 GIPMHPGVPG 177


>sp|THSB_SACSH|CHAPERONIN subunit beta|Saccharolobus shibatae (strain ATCC 51178

Query: 5 HPGMP 9
HPGMP
Sbjct: 233 HPGMP 237


>sp|PRIS_SACS2|DNA primase small subunit PriS|Saccharolobus solfataricus (strain ATCC

Query: 1 GAPGHPG 7
G PG+PG
Sbjct: 207 GVPGYPG 213


>sp|RS6E_CALMQ|SMALL ribosomal subunit protein eS6|Caldivirga maquilingensis (strain

Query: 1 GAPGHPGMPG 10
GAP HPG+ G
Sbjct: 65 GAPMHPGIEG 74


>sp|ELP3_METJA|TRNA uridine(34) acetyltransferase|Methanocaldococcus jannaschii (strain

Query: 6 PGMPG 10
PGMPG
Sbjct: 279 PGMPG 283


>sp|ELP3_METIM|TRNA uridine(34) acetyltransferase|Methanocaldococcus infernus (strain

Query: 6 PGMPG 10
PGMPG
Sbjct: 273 PGMPG 277


>sp|GSA_THEVO|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 GAPGHPGMP 9
G+P PG+P
Sbjct: 157 GSPSSPGIP 165


>sp|GSA_METKA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanopyrus kandleri (strain AV19 /

Query: 1 GAPGHPGMP 9
GAP PG+P
Sbjct: 164 GAPDSPGIP 172


>sp|DTDA_METS5|D-AMINOACYL-TRNA deacylase|Metallosphaera sedula (strain ATCC 51363

Query: 5 HPGMPG 10
HPG PG
Sbjct: 61 HPGNPG 66


>sp|GSA_METJA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 GHPGMPG 10
GHP PG
Sbjct: 162 GHPNSPG 168


Query: 1 GAPGHPGMP 9
G P PG+P
Sbjct: 162 GHPNSPGIP 170


>sp|Y1914_METTH|UPF0425 pyridoxal phosphate-dependent protein MTH_1914|Methanothermobacter

Query: 3 PGHPGMPG 10
P HP +PG
Sbjct: 109 PSHPSVPG 116


>sp|RPO2N_METJA|DNA-DIRECTED RNA polymerase subunit Rpo2N|Methanocaldococcus jannaschii (strain

Query: 6 PGMPG 10
PGMPG
Sbjct: 214 PGMPG 218


>sp|RL29_METMA|LARGE ribosomal subunit protein uL29|Methanosarcina mazei (strain ATCC

Query: 1 GAPGHPGMPG 10
GAP +PG G
Sbjct: 39 GAPDNPGRIG 48


>sp|RL29_METMP|LARGE ribosomal subunit protein uL29|Methanococcus maripaludis (strain

Query: 1 GAPGHPG 7
GAP +PG
Sbjct: 39 GAPSNPG 45


>sp|RL29_METM7|LARGE ribosomal subunit protein uL29|Methanococcus maripaludis (strain

Query: 1 GAPGHPG 7
GAP +PG
Sbjct: 39 GAPSNPG 45


>sp|RL29_METM5|LARGE ribosomal subunit protein uL29|Methanococcus maripaludis (strain

Query: 1 GAPGHPG 7
GAP +PG
Sbjct: 39 GAPSNPG 45


>sp|RL29_METJA|LARGE ribosomal subunit protein uL29|Methanocaldococcus jannaschii

Query: 1 GAPGHPG 7
GAP +PG
Sbjct: 39 GAPSNPG 45


>sp|RL29_META3|LARGE ribosomal subunit protein uL29|Methanococcus aeolicus (strain

Query: 1 GAPGHPG 7
GAP +PG
Sbjct: 39 GAPSNPG 45


>sp|RL29_METBF|LARGE ribosomal subunit protein uL29|Methanosarcina barkeri (strain

Query: 1 GAPGHPGMPG 10
GAP +PG G
Sbjct: 39 GAPENPGRIG 48


>sp|RL29_METAC|LARGE ribosomal subunit protein uL29|Methanosarcina acetivorans (strain

Query: 1 GAPGHPGMPG 10
GAP +PG G
Sbjct: 39 GAPENPGRIG 48


>sp|Y1519_METJA|UNCHARACTERIZED protein MJ1519|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 HPGMPG 10
+PG+PG
Sbjct: 282 YPGLPG 287


>sp|GSA_THEAC|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 GAPGHPGMP 9
G+P PG+P
Sbjct: 157 GSPSSPGVP 165


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 GAPGHPG 7
G GHPG
Sbjct: 440 GPEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 1 GAPGHPG 7
G GHPG
Sbjct: 440 GPEGHPG 446


>sp|SECY_METTH|PROTEIN translocase subunit SecY|Methanothermobacter thermautotrophicus

Query: 2 APGHPGMPG 10
AP PG+P
Sbjct: 196 APTQPGVPA 204


>sp|RS6E_PYRAR|SMALL ribosomal subunit protein eS6|Pyrobaculum arsenaticum (strain DSM

Query: 1 GAPGHPGMPG 10
GAP PG+PG
Sbjct: 65 GAPMVPGVPG 74


>sp|RNZ_METS5|RIBONUCLEASE Z|Metallosphaera sedula (strain ATCC 51363

Query: 1 GAPGHPGMPG 10
GAP G+P
Sbjct: 12 GAPSRRGLPA 21


>sp|GSA_METST|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 1 GAPGHPGMP 9
G P PG+P
Sbjct: 158 GLPDSPGIP 166


>sp|RL10_THEON|LARGE ribosomal subunit protein uL10|Thermococcus onnurineus (strain NA1)

Query: 2 APGHPGMP 9
AP PG+P
Sbjct: 109 APAKPGVP 116


>sp|DP2L_NATPD|DNA polymerase II large subunit|Natronomonas pharaonis (strain ATCC

Query: 4 GHPGMPG 10
GHP PG
Sbjct: 345 GHPSEPG 351


>sp|AROA_METMA|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Methanosarcina mazei (strain ATCC

Query: 1 GAPGHPGMP 9
G+ G PG+P
Sbjct: 72 GSNGKPGIP 80


>sp|IORA_METTM|INDOLEPYRUVATE oxidoreductase subunit IorA|Methanothermobacter marburgensis

Query: 1 GAPGHPGMP 9
G HPG+P
Sbjct: 483 GGQPHPGLP 491


>sp|FPOD_METMA|F(420)H(2) dehydrogenase subunit D|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 APGHPGMPG 10
P HP PG
Sbjct: 15 GPQHPMQPG 23


>sp|RTCB_AERPE|TRNA-SPLICING ligase RtcB|Aeropyrum pernix (strain ATCC 700893

Query: 3 PGHPGMP 9
PGHP +P
Sbjct: 360 PGHPEIP 366


>sp|IORA_METTH|INDOLEPYRUVATE oxidoreductase subunit IorA|Methanothermobacter thermautotrophicus

Query: 1 GAPGHPGMP 9
G HPG+P
Sbjct: 483 GGQPHPGLP 491


>sp|AATB_NITMS|A-TYPE ATP synthase subunit B|Nitrosopumilus maritimus (strain SCM1)

Query: 3 PGHPGMPG 10
PG G PG
Sbjct: 272 PGRKGYPG 279


>sp|RL29_NATPD|LARGE ribosomal subunit protein uL29|Natronomonas pharaonis (strain

Query: 1 GAPGHPGMPG 10
GAP +PG G
Sbjct: 39 GAPENPGRIG 48


>sp|PSTS_METJA|PHOSPHATE-BINDING protein PstS|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 APGHPGMP 9
APG+ G+P
Sbjct: 366 APGYVGLP 373


>sp|GLCS_SACS2|GLUCOSE-BINDING protein GlcS|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 GAPGHP 6
G PGHP
Sbjct: 496 GFPGHP 501




113|SequenceR|570|561|REGKPGAPGH

>sp|GATD_PYRAB|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrococcus abyssi (strain GE5 /

Query: 2 EGKPGAP 8
EGKPG P
Sbjct: 86 EGKPGLP 92


>sp|AROD_METM7|3-DEHYDROQUINATE dehydratase|Methanococcus maripaludis (strain C7 /

Query: 2 EGKPGAPGH 10
EGK APG
Sbjct: 196 EGKASAPGQ 204


>sp|AROD_METM6|3-DEHYDROQUINATE dehydratase|Methanococcus maripaludis (strain C6 /

Query: 2 EGKPGAPGH 10
EGK APG
Sbjct: 196 EGKASAPGQ 204


>sp|AROD_METM5|3-DEHYDROQUINATE dehydratase|Methanococcus maripaludis (strain C5 /

Query: 2 EGKPGAPGH 10
EGK APG
Sbjct: 196 EGKASAPGQ 204


>sp|PUR5_PYRFU|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 REGKPGAPG 9
R+GK G PG
Sbjct: 32 RKGKLGEPG 40


>sp|PUR5_THEGJ|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 REGKPGAPGH 10
R GKPG P
Sbjct: 32 RRGKPGEPAE 41


>sp|PMDHL_METTH|PHOSPHOMEVALONATE dehydratase large subunit|Methanothermobacter thermautotrophicus

Query: 1 REGKPGA 7
REG PGA
Sbjct: 161 REGGPGA 167


>sp|DNAJ_HALSA|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 700922

Query: 2 EGKPGAPG 9
EG PG PG
Sbjct: 256 EGAPGEPG 263


>sp|DNAJ_HALS3|CHAPERONE protein DnaJ|Halobacterium salinarum (strain ATCC 29341

Query: 2 EGKPGAPG 9
EG PG PG
Sbjct: 256 EGAPGEPG 263


>sp|AATI_AERPE|A-TYPE ATP synthase subunit I|Aeropyrum pernix (strain ATCC 700893

Query: 2 EGKPGAP 8
EG PG+P
Sbjct: 215 EGVPGSP 221


>sp|Y1659_ARCFU|UNCHARACTERIZED protein AF_1659|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 KPGAPG 9
KPG PG
Sbjct: 60 KPGEPG 65


>sp|PUR5_PYRAB|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE cyclo-ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 REGKPGAPG 9
R+GK G PG
Sbjct: 32 RKGKVGEPG 40


>sp|RISC_METTH|RIBOFLAVIN synthase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 REGKPGA 7
REGKP A
Sbjct: 144 REGKPDA 150


>sp|HEM1_HALSA|GLUTAMYL-TRNA reductase|Halobacterium salinarum (strain ATCC 700922

Query: 1 REGKPGAPGH 10
R+ PGA GH
Sbjct: 274 RDVAPGAGGH 283


>sp|HEM1_HALS3|GLUTAMYL-TRNA reductase|Halobacterium salinarum (strain ATCC 29341

Query: 1 REGKPGAPGH 10
R+ PGA GH
Sbjct: 274 RDVAPGAGGH 283


>sp|Y1505_AERPE|UPF0273 protein APE_1505.1|Aeropyrum pernix (strain ATCC 700893

Query: 1 REGKPG 6
REG+PG
Sbjct: 49 REGEPG 54




114|SequenceR|575|566|AGKEGREGKP

>sp|DACZ_METJA|DIADENYLATE cyclase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GKEGREGK 9
G+EGREG+
Sbjct: 173 GREGREGE 180


>sp|Y414_METJA|UNCHARACTERIZED protein MJ0414|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 KEGREG 8
KEGREG
Sbjct: 232 KEGREG 237


>sp|TDXH2_THEAC|PEROXIREDOXIN 2|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 GKEGREGKP 10
G+EG EG P
Sbjct: 167 GQEGIEGAP 175


>sp|Y3511_METJA|UNCHARACTERIZED protein MJECL11|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 AGKEGREGK 9
A KEG EG+
Sbjct: 72 ASKEGIEGR 80


>sp|GCK_SULTO|GLYCERATE 2-kinase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 AGKEGREGK 9
AGK GR G+
Sbjct: 306 AGKGGRNGE 314




115|SequenceR|580|571|GPEGMAGKEG

>sp|SYP_HALWD|PROLINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 GPEGMAG 7
GPEGM+G
Sbjct: 34 GPEGMSG 40


>sp|SYP_HALLT|PROLINE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 GPEGMAG 7
GPEGM+G
Sbjct: 35 GPEGMSG 41


>sp|Y979_METVS|UPF0179 protein Mevan_0979|Methanococcus vannielii (strain ATCC 35089

Query: 2 PEGMAGK 8
PEG++GK
Sbjct: 110 PEGISGK 116


>sp|Y952_METM7|UPF0179 protein MmarC7_0952|Methanococcus maripaludis (strain C7 /

Query: 2 PEGMAGK 8
PEG++GK
Sbjct: 110 PEGISGK 116


>sp|Y993_METM6|UPF0179 protein MmarC6_0993|Methanococcus maripaludis (strain C6 /

Query: 2 PEGMAGK 8
PEG++GK
Sbjct: 110 PEGISGK 116


>sp|Y1679_METMP|UPF0179 protein MMP1679|Methanococcus maripaludis (strain DSM 14266

Query: 2 PEGMAGK 8
PEG++GK
Sbjct: 110 PEGVSGK 116


>sp|Y1728_METM5|UPF0179 protein MmarC5_1728|Methanococcus maripaludis (strain C5 /

Query: 2 PEGMAGK 8
PEG++GK
Sbjct: 110 PEGISGK 116


>sp|TKSU_THEKO|TK-SUBTILISIN kodakarensis (strain ATCC BAA-918

Query: 1 GPEGMAGKEG 10
GP+G+A K+G
Sbjct: 230 GPDGVADKDG 239


>sp|Y865_METJA|PUTATIVE methylthiotransferase MJ0865|Methanocaldococcus jannaschii (strain

Query: 3 EGMAGKEG 10
EG+A KEG
Sbjct: 127 EGLAYKEG 134


>sp|DHYS2_METAC|PROBABLE deoxyhypusine synthase 2|Methanosarcina acetivorans (strain ATCC

Query: 1 GPEGMA 6
GPEG+A
Sbjct: 335 GPEGLA 340


>sp|RL4_METTH|LARGE ribosomal subunit protein uL4|Methanothermobacter

Query: 1 GPEGMAGKE 9
GP+ MAGK
Sbjct: 47 GPDPMAGKR 55


>sp|AATA_THEAC|A-TYPE ATP synthase subunit A|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 PEGMAGK 8
PEG++GK
Sbjct: 149 PEGISGK 155




116|SequenceR|585|576|YPGRPGPEGM

>sp|ARLY_METMA|ARGININOSUCCINATE lyase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 PGRPGPEGM 10
PG P PE M
Sbjct: 441 PGGPAPEEM 449


>sp|RS3_THEVO|SMALL ribosomal subunit protein uS3|Thermoplasma volcanium (strain ATCC

Query: 1 YPGRPGPEGM 10
Y G PG +GM
Sbjct: 152 YSGEPGSKGM 161


>sp|DP2L_PICTO|DNA polymerase II large subunit|Picrophilus torridus (strain ATCC

Query: 1 YPGRPG 6
YP RPG
Sbjct: 301 YPNRPG 306


>sp|RS3_THEAC|SMALL ribosomal subunit protein uS3|Thermoplasma acidophilum (strain ATCC

Query: 1 YPGRPGPEGM 10
Y G PG +GM
Sbjct: 152 YSGEPGSKGM 161


>sp|Y520_METJA|PUTATIVE NADH-ubiquinone oxidoreductase MJ0520|Methanocaldococcus

Query: 3 GRPGP 7
GRPGP
Sbjct: 38 GRPGP 42


>sp|Y1200_PYRAB|UNCHARACTERIZED ATP-binding protein PYRAB12000|Pyrococcus abyssi (strain GE5 /

Query: 1 YPGRPGPEGM 10
Y G P PEG+
Sbjct: 85 YKGIPIPEGI 94


>sp|DTDA_METS5|D-AMINOACYL-TRNA deacylase|Metallosphaera sedula (strain ATCC 51363

Query: 1 YPGRPGPEGM 10
+PG PG M
Sbjct: 61 HPGNPGKSAM 70


>sp|ARLY_METTP|ARGININOSUCCINATE lyase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 PGRPGPE 8
PG P PE
Sbjct: 436 PGGPAPE 442


>sp|ARLY_METTH|ARGININOSUCCINATE lyase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 PGRPGPE 8
PG P PE
Sbjct: 444 PGGPAPE 450


>sp|Y1519_METJA|UNCHARACTERIZED protein MJ1519|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YPGRPG 6
YPG PG
Sbjct: 282 YPGLPG 287


>sp|ENDA_METBF|TRNA-SPLICING endonuclease|Methanosarcina barkeri (strain Fusaro /

Query: 1 YPGRPGPEGM 10
Y GRP EG+
Sbjct: 25 YFGRPKGEGL 34


>sp|SYM_PYRHO|METHIONINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 YPGRPGPEG 9
Y GR PEG
Sbjct: 560 YMGRNNPEG 568


>sp|SYC_PYRCJ|CYSTEINE--TRNA ligase|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 PGRPG 6
PGRPG
Sbjct: 204 PGRPG 208


>sp|PAND_PYRIL|ASPARTATE 1-decarboxylase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 PGRPG 6
PGRPG
Sbjct: 60 PGRPG 64


>sp|ILVB_METAO|PROBABLE acetolactate synthase large subunit|Methanococcus aeolicus

Query: 3 GRPGP 7
GRPGP
Sbjct: 148 GRPGP 152


>sp|Y1659_ARCFU|UNCHARACTERIZED protein AF_1659|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 PGRPGPEG 9
PG PG +G
Sbjct: 61 PGEPGEDG 68


>sp|SYM_PYRAR|METHIONINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 PGRPGPE 8
PG+P PE
Sbjct: 411 PGKPSPE 417


>sp|DTDA_METKA|D-AMINOACYL-TRNA deacylase|Methanopyrus kandleri (strain AV19 /

Query: 2 PGRPGPEG 9
PG P PE
Sbjct: 94 PGNPTPEA 101


>sp|MTD_METTM|F420-DEPENDENT methylenetetrahydromethanopterin

Query: 2 PGRPGP 7
PG PGP
Sbjct: 70 PGAPGP 75


>sp|Y1797_METTH|PROBABLE S-adenosyl-L-methionine-binding protein

Query: 2 PGRPGPEGM 10
P RP P G+
Sbjct: 89 PARPNPVGL 97


>sp|SYV_NATPD|VALINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 YPGRPG 6
Y GRPG
Sbjct: 656 YEGRPG 661


>sp|MTD_METTH|F420-DEPENDENT methylenetetrahydromethanopterin

Query: 2 PGRPGP 7
PG PGP
Sbjct: 70 PGAPGP 75


>sp|ILVB_METJA|PROBABLE acetolactate synthase large subunit|Methanocaldococcus jannaschii

Query: 3 GRPGP 7
GRPGP
Sbjct: 148 GRPGP 152


>sp|SYT_METMJ|THREONINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 GRPGPEG 9
G PGPEG
Sbjct: 185 GYPGPEG 191




117|SequenceR|590|581|KGPLGYPGRP

>sp|TRPCD_ARCFU|TRYPTOPHAN biosynthesis protein TrpCD|Archaeoglobus fulgidus (strain ATCC

Query: 2 GPLGYPGRP 10
GPL P RP
Sbjct: 393 GPLTNPARP 401


>sp|SYI_NATPD|ISOLEUCINE--TRNA ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 GPLGYPG 8
G LGYPG
Sbjct: 541 GTLGYPG 547


>sp|DP2L_PICTO|DNA polymerase II large subunit|Picrophilus torridus (strain ATCC

Query: 4 LGYPGRP 10
GYP RP
Sbjct: 299 FGYPNRP 305


>sp|TRPD_IGNH4|ANTHRANILATE phosphoribosyltransferase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 GPLGYPGRP 10
GPL P RP
Sbjct: 179 GPLSNPARP 187


>sp|RNH2_METVS|RIBONUCLEASE HII|Methanococcus vannielii (strain ATCC 35089

Query: 5 GYPGRP 10
GYPG P
Sbjct: 195 GYPGDP 200


>sp|SYT_PYRIL|THREONINE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 5 GYPGRP 10
GYP RP
Sbjct: 590 GYPNRP 595


>sp|GLCS_SACS2|GLUCOSE-BINDING protein GlcS|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 GPLGYPGRP 10
G LG+PG P
Sbjct: 493 GYLGFPGHP 501


>sp|MRE11_METTH|DNA double-strand break repair protein|Methanothermobacter

Query: 2 GPLGYPG 8
GP+ YPG
Sbjct: 379 GPIVYPG 385


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 2 GPLGYPG 8
GP G+PG
Sbjct: 440 GPEGHPG 446


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 2 GPLGYPG 8
GP G+PG
Sbjct: 440 GPEGHPG 446


>sp|ILVD_ARCFU|DIHYDROXY-ACID dehydratase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 GPLGYPGRP 10
GP G PG P
Sbjct: 430 GPKGAPGMP 438


>sp|SYT_PYRNV|THREONINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 5 GYPGRP 10
GYP RP
Sbjct: 590 GYPNRP 595


>sp|PYRH_METAC|URIDYLATE kinase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 GPLGYPGRP 10
GP GYP P
Sbjct: 84 GPDGYPEIP 92


>sp|PUR2_METBU|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanococcoides burtonii (strain DSM 6242

Query: 3 PLGYPGRP 10
P GYP P
Sbjct: 338 PAGYPDEP 345


>sp|KAE1B_METST|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 4 LGYPGRP 10
LG+PG P
Sbjct: 169 LGHPGGP 175


>sp|PUR2_METAR|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanocella arvoryzae (strain DSM 22066

Query: 3 PLGYPGRP 10
P GYP P
Sbjct: 339 PAGYPDNP 346


>sp|ILVD_SACS2|DIHYDROXY-ACID dehydratase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 KGPLGYPGRP 10
+GP G PG P
Sbjct: 437 EGPKGAPGMP 446


>sp|ILVD_SACI7|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 KGPLGYPGRP 10
+GP G PG P
Sbjct: 437 EGPKGAPGMP 446


>sp|ILVD_SACI2|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 KGPLGYPGRP 10
+GP G PG P
Sbjct: 437 EGPKGAPGMP 446


>sp|ILVD_SACI1|DIHYDROXY-ACID dehydratase|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 KGPLGYPGRP 10
+GP G PG P
Sbjct: 437 EGPKGAPGMP 446


>sp|THIL_NITMS|THIAMINE-MONOPHOSPHATE kinase|Nitrosopumilus maritimus (strain SCM1)

Query: 2 GPLGYPG 8
GP GY G
Sbjct: 151 GPFGYTG 157


>sp|HMDX_METJA|H(2)-FORMING methylenetetrahydromethanopterin dehydrogenase-related protein

Query: 3 PLGYPGRP 10
P G PG P
Sbjct: 145 PTGVPGTP 152


>sp|KAE1_PYRAB|TRNA N6-adenosine threonylcarbamoyltransferase|Pyrococcus abyssi (strain

Query: 4 LGYPGRP 10
LG+PG P
Sbjct: 167 LGFPGGP 173


>sp|Y120_METTH|PUTATIVE NADH dehydrogenase/NAD(P)H nitroreductase|Methanothermobacter

Query: 3 PLGYPG 8
PLGYP
Sbjct: 167 PLGYPA 172


>sp|DUT_METJA|DEOXYURIDINE 5'-triphosphate nucleotidohydrolase|Methanocaldococcus jannaschii

Query: 5 GYPGRP 10
GY GRP
Sbjct: 111 GYEGRP 116


>sp|KAE1_THESM|TRNA N6-adenosine threonylcarbamoyltransferase|Thermococcus sibiricus

Query: 4 LGYPGRP 10
LG+PG P
Sbjct: 167 LGFPGGP 173


>sp|KAE1_PYRFU|TRNA N6-adenosine threonylcarbamoyltransferase|Pyrococcus furiosus

Query: 4 LGYPGRP 10
LG+PG P
Sbjct: 167 LGFPGGP 173


>sp|KAE1B_METS3|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 4 LGYPGRP 10
LG+PG P
Sbjct: 172 LGHPGGP 178


>sp|ILVD_METB6|DIHYDROXY-ACID dehydratase|Methanoregula boonei (strain DSM 21154

Query: 1 KGPLGYPGRP 10
+GP G PG P
Sbjct: 432 EGPRGGPGMP 441


>sp|ILVD_SULAC|DIHYDROXY-ACID dehydratase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 KGPLGYPGRP 10
+GP G PG P
Sbjct: 438 EGPKGGPGMP 447


>sp|PUR2_METJA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PLGYPGRP 10
P GYP P
Sbjct: 346 PKGYPDNP 353


>sp|KAE1_PYRHO|TRNA N6-adenosine threonylcarbamoyltransferase|Pyrococcus horikoshii

Query: 4 LGYPGRP 10
LG+PG P
Sbjct: 167 LGFPGGP 173


>sp|PUR2_METAC|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 3 PLGYPGRP 10
P GYP P
Sbjct: 341 PAGYPDNP 348


>sp|Y038_METJA|UNCHARACTERIZED protein MJ0038|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PLGYPGRP 10
P GYP +P
Sbjct: 36 PYGYPDKP 43


>sp|ILVD_METHJ|DIHYDROXY-ACID dehydratase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 KGPLGYPGRP 10
+GP G PG P
Sbjct: 429 EGPKGGPGMP 438


>sp|AATB_THEPD|A-TYPE ATP synthase subunit B|Thermofilum pendens (strain DSM 2475

Query: 2 GPLGYPG 8
G LGYPG
Sbjct: 270 GRLGYPG 276


>sp|PUR2_METMA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 PLGYPGRP 10
P GYP P
Sbjct: 341 PAGYPDNP 348


>sp|PUR2_METBF|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanosarcina barkeri (strain Fusaro /

Query: 3 PLGYPGRP 10
P GYP P
Sbjct: 339 PAGYPENP 346


>sp|AMZA_AERPE|ARCHAEMETZINCIN pernix (strain ATCC 700893

Query: 3 PLGYPG 8
P+G+PG
Sbjct: 11 PVGFPG 16


>sp|ILVD_METMJ|DIHYDROXY-ACID dehydratase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 KGPLGYPGRP 10
+GP G PG P
Sbjct: 429 EGPRGGPGMP 438


>sp|CAPPA_METKA|PHOSPHOENOLPYRUVATE carboxylase|Methanopyrus kandleri (strain AV19 /

Query: 1 KGPLGY 6
KGP+GY
Sbjct: 348 KGPVGY 353


>sp|RS4_METLZ|SMALL ribosomal subunit protein uS4|Methanocorpusculum labreanum

Query: 4 LGYPGR 9
+GYPG+
Sbjct: 1 MGYPGK 6


>sp|RS4_METHJ|SMALL ribosomal subunit protein uS4|Methanospirillum hungatei JF-1

Query: 4 LGYPGR 9
+GYPG+
Sbjct: 1 MGYPGK 6


>sp|PIMT_METMA|PROTEIN-L-ISOASPARTATE O-methyltransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 GPLGYPG 8
G +GYPG
Sbjct: 163 GSMGYPG 169


>sp|MUTL_METMJ|DNA mismatch repair protein MutL|Methanoculleus marisnigri (strain ATCC

Query: 3 PLGYPGRP 10
P+G PG P
Sbjct: 361 PVGEPGAP 368




118|SequenceR|595|586|GPEGDKGPLG

>sp|Y1318_METJA|UNCHARACTERIZED protein MJ1318|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 PEGDKGPLG 10
P+G GP+G
Sbjct: 140 PDGSIGPVG 148


>sp|PUR2_METKA|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanopyrus kandleri (strain AV19 /

Query: 3 EGDKGPL 9
EGDKGP+
Sbjct: 226 EGDKGPI 232


>sp|Y1301_METJA|UNCHARACTERIZED ATP-binding protein MJ1301|Methanocaldococcus jannaschii (strain

Query: 3 EGDKGPL 9
EGDK P+
Sbjct: 86 EGDKSPI 92


>sp|Y945_METJA|UNCHARACTERIZED protein MJ0945|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 GDKGPLG 10
GDK P G
Sbjct: 55 GDKAPFG 61


>sp|TRM5B_PYRAB|TRNA (guanine(37)-N(1))-methyltransferase Trm5b|Pyrococcus abyssi

Query: 1 GPEGD 5
GPEGD
Sbjct: 280 GPEGD 284


>sp|ENCP1_PYRFU|FERRITIN-LIKE-ENCAPSULIN shell fusion protein|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GPEGD 5
GPEGD
Sbjct: 317 GPEGD 321


>sp|HELS_SULAC|ATP-DEPENDENT DNA helicase Hel308|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 EGDKGPL 9
+GD+GP+
Sbjct: 155 DGDRGPV 161


>sp|PUR2_METTH|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 3 EGDKGPL 9
EGD+GP+
Sbjct: 220 EGDQGPI 226


>sp|RS6E_METB6|SMALL ribosomal subunit protein eS6|Methanoregula boonei (strain DSM

Query: 1 GPEGDKGPLG 10
G E D GPLG
Sbjct: 35 GDEVDAGPLG 44




119|SequenceR|600|591|PFGDLGPEGD

>sp|ENCP1_PYRFU|FERRITIN-LIKE-ENCAPSULIN shell fusion protein|Pyrococcus furiosus (strain ATCC 43587

Query: 4 DLGPEGD 10
+LGPEGD
Sbjct: 315 ELGPEGD 321


>sp|UVRA_METTH|UVRABC system protein A|Methanothermobacter thermautotrophicus (strain

Query: 4 DLGPEG 9
DLGPEG
Sbjct: 911 DLGPEG 916


>sp|DTDA_THEVO|D-AMINOACYL-TRNA deacylase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 PFGDLGPEGD 10
P G+ GP+ D
Sbjct: 80 PTGNFGPKAD 89


>sp|Y1311_METJA|UNCHARACTERIZED protein MJ1311|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PFGDLGP 7
PF DL P
Sbjct: 80 PFSDLNP 86


>sp|TRM5B_PYRAB|TRNA (guanine(37)-N(1))-methyltransferase Trm5b|Pyrococcus abyssi

Query: 5 LGPEGD 10
GPEGD
Sbjct: 279 FGPEGD 284


>sp|Y1638_PYRFU|MEMO1 family protein PF1638|Pyrococcus furiosus (strain ATCC 43587

Query: 2 FGDLGPEGD 10
F DLG EG+
Sbjct: 26 FTDLGEEGN 34


>sp|ARGD_METTH|ACETYLORNITHINE aminotransferase|Methanothermobacter thermautotrophicus (strain

Query: 1 PFGDLGPEGD 10
P+GD+G D
Sbjct: 163 PYGDIGAMAD 172


>sp|RL18_SULTO|LARGE ribosomal subunit protein uL18|Sulfurisphaera tokodaii (strain DSM

Query: 1 PFGDLGPEGD 10
P GDLG + D
Sbjct: 132 PVGDLGIKED 141


>sp|SYE_AERPE|GLUTAMATE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 PFGDLGPE 8
P DLGPE
Sbjct: 216 PTRDLGPE 223


>sp|MCRD_METBF|METHYL-COENZYME M reductase operon protein|Methanosarcina barkeri (strain Fusaro /

Query: 2 FGDLGPEGD 10
+ LGPE D
Sbjct: 130 YAKLGPEAD 138


>sp|DTDA_THEAC|D-AMINOACYL-TRNA deacylase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 PFGDLGPEGD 10
P G+ GP D
Sbjct: 80 PTGNFGPSAD 89


>sp|GGR_META3|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 FGDLGPEG 9
FGD+ P+G
Sbjct: 199 FGDICPKG 206


>sp|Y1477_THEKO|MEMO1 family protein TK1477|Thermococcus kodakarensis (strain ATCC

Query: 2 FGDLGPEGD 10
F DLG EG+
Sbjct: 26 FSDLGEEGN 34


>sp|HUTH_THEVO|PROBABLE histidine ammonia-lyase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 FGDLGPEGD 10
FG +G GD
Sbjct: 136 FGSVGASGD 144


>sp|CFBD_METTH|NI-SIROHYDROCHLORIN a,c-diamide reductive cyclase complex,|Methanothermobacter

Query: 1 PFGDLGPE 8
PFG L P+
Sbjct: 215 PFGSLNPD 222


>sp|Y1726_THEGJ|MEMO1 family protein TGAM_1726|Thermococcus gammatolerans (strain DSM

Query: 2 FGDLGPEG 9
F DLG EG
Sbjct: 26 FSDLGEEG 33


>sp|HIS8_METMA|HISTIDINOL-PHOSPHATE aminotransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PFGDLGPEGD 10
P G+L PE D
Sbjct: 175 PSGNLLPEAD 184


>sp|G1PDH_METKA|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanopyrus kandleri (strain AV19 /

Query: 1 PFGDLGPEG 9
P G L PEG
Sbjct: 216 PIGKLLPEG 224


>sp|ASST_METJA|L-ASPARTATE semialdehyde sulfurtransferase|Methanocaldococcus jannaschii

Query: 1 PFGDLGPEGD 10
PFG L +GD
Sbjct: 238 PFGTLMVKGD 247


>sp|GGR_METM5|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain C5 /

Query: 2 FGDLGPEG 9
FGD+ P+G
Sbjct: 198 FGDICPKG 205


>sp|GGR_METM6|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain C6 /

Query: 2 FGDLGPEG 9
FGD+ P+G
Sbjct: 198 FGDICPKG 205


>sp|SYE_METAC|GLUTAMATE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 6 GPEGD 10
GPEGD
Sbjct: 525 GPEGD 529


>sp|GGR_METMP|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain DSM 14266

Query: 2 FGDLGPEG 9
FGD+ P+G
Sbjct: 198 FGDICPKG 205


>sp|GGR_METM7|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus maripaludis (strain C7 /

Query: 2 FGDLGPEG 9
FGD+ P+G
Sbjct: 198 FGDICPKG 205


>sp|SYE_METMA|GLUTAMATE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 PFGDLGPEGD 10
P GPEGD
Sbjct: 520 PVKVCGPEGD 529


>sp|HIS8_METAC|HISTIDINOL-PHOSPHATE aminotransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 PFGDLGPEGD 10
P G+L PE D
Sbjct: 174 PSGNLLPEAD 183


>sp|MOBA_METTH|PROBABLE molybdenum cofactor guanylyltransferase|Methanothermobacter

Query: 1 PFGDLGPE 8
P+GD GPE
Sbjct: 130 PWGDDGPE 137


>sp|RL18_METS5|LARGE ribosomal subunit protein uL18|Metallosphaera sedula (strain ATCC

Query: 1 PFGDLGPEGD 10
P GD+G D
Sbjct: 131 PMGDVGVNND 140




120|SequenceR|605|596|EGRPGPFGDL

>sp|DNLI_META3|DNA ligase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 GRPGPFGDL 10
GRP PF D+
Sbjct: 311 GRPRPFQDI 319


>sp|Y520_METJA|PUTATIVE NADH-ubiquinone oxidoreductase MJ0520|Methanocaldococcus

Query: 1 EGRPGP 6
+GRPGP
Sbjct: 37 QGRPGP 42


>sp|AATD_SULTO|A-TYPE ATP synthase subunit D|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 RPGPFGDL 10
+P PFGD+
Sbjct: 114 QPQPFGDI 121


>sp|PELO_SULAC|PROTEIN pelota homolog|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 4 PGPFGDL 10
PGPF D+
Sbjct: 194 PGPFKDM 200


>sp|Y1724_ARCFU|UNCHARACTERIZED protein AF_1724|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 PGPFGDL 10
P P+GDL
Sbjct: 42 PSPYGDL 48


>sp|LONH_THEAC|PUTATIVE lon protease homolog|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 GRPGPFGDL 10
G GPFGD+
Sbjct: 155 GTQGPFGDV 163


>sp|DNLI_METVS|DNA ligase|Methanococcus vannielii (strain ATCC 35089

Query: 2 GRPGPFGDL 10
G+P PF D+
Sbjct: 310 GKPRPFQDI 318


>sp|DNLI_METMP|DNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 GRPGPFGDL 10
G+P PF D+
Sbjct: 310 GKPRPFQDI 318


>sp|DNLI_METM7|DNA ligase|Methanococcus maripaludis (strain C7 /

Query: 2 GRPGPFGDL 10
G+P PF D+
Sbjct: 310 GKPRPFQDI 318


>sp|DNLI_METM6|DNA ligase|Methanococcus maripaludis (strain C6 /

Query: 2 GRPGPFGDL 10
G+P PF D+
Sbjct: 310 GKPRPFQDI 318


>sp|DNLI_METM5|DNA ligase|Methanococcus maripaludis (strain C5 /

Query: 2 GRPGPFGDL 10
G+P PF D+
Sbjct: 310 GKPRPFQDI 318


>sp|LONH_THEVO|PUTATIVE lon protease homolog|Thermoplasma volcanium (strain ATCC 51530

Query: 2 GRPGPFGDL 10
G GPFGD+
Sbjct: 155 GTQGPFGDV 163


>sp|DNLI_PYRHO|DNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 EGRPGPF 7
EGRP PF
Sbjct: 306 EGRPLPF 312


>sp|DNLI_METJA|DNA ligase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 GRPGPFGDL 10
G+P PF D+
Sbjct: 308 GKPRPFQDI 316


>sp|Y1005_METJA|UNCHARACTERIZED protein MJ1005|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 EGRPGPFG 8
E + GPFG
Sbjct: 111 ESKSGPFG 118


>sp|AATA_THEVO|A-TYPE ATP synthase subunit A|Thermoplasma volcanium (strain ATCC 51530

Query: 4 PGPFG 8
PGPFG
Sbjct: 228 PGPFG 232


>sp|AATA_THEAC|A-TYPE ATP synthase subunit A|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 PGPFG 8
PGPFG
Sbjct: 228 PGPFG 232


>sp|DNLI_ARCFU|DNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 EGRPGPF 7
EG+P PF
Sbjct: 304 EGKPMPF 310


>sp|AATA_METB6|A-TYPE ATP synthase subunit A|Methanoregula boonei (strain DSM 21154

Query: 4 PGPFG 8
PGPFG
Sbjct: 236 PGPFG 240


>sp|AATA_METAR|A-TYPE ATP synthase subunit A|Methanocella arvoryzae (strain DSM 22066

Query: 4 PGPFG 8
PGPFG
Sbjct: 228 PGPFG 232


>sp|AATA1_METHJ|A-TYPE ATP synthase subunit A|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 PGPFG 8
PGPFG
Sbjct: 230 PGPFG 234


>sp|AATA_PYRAB|A-TYPE ATP synthase subunit A|Pyrococcus abyssi (strain GE5 /

Query: 4 PGPFG 8
PGPFG
Sbjct: 233 PGPFG 237


>sp|AATA_METM5|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C5 /

Query: 4 PGPFG 8
PGPFG
Sbjct: 231 PGPFG 235


>sp|AATA_PYRFU|A-TYPE ATP synthase subunit A|Pyrococcus furiosus (strain ATCC 43587

Query: 4 PGPFG 8
PGPFG
Sbjct: 233 PGPFG 237


>sp|AATA_METM7|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C7 /

Query: 4 PGPFG 8
PGPFG
Sbjct: 231 PGPFG 235


>sp|AATA_METM6|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain C6 /

Query: 4 PGPFG 8
PGPFG
Sbjct: 231 PGPFG 235


>sp|ILVB_METAO|PROBABLE acetolactate synthase large subunit|Methanococcus aeolicus

Query: 2 GRPGP 6
GRPGP
Sbjct: 148 GRPGP 152


>sp|AATA_METST|A-TYPE ATP synthase subunit A|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 PGPFG 8
PGPFG
Sbjct: 231 PGPFG 235


>sp|SUA5_SULTO|THREONYLCARBAMOYL-AMP synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 3 RPGPF 7
RPGPF
Sbjct: 196 RPGPF 200


>sp|CARA_SACS2|CARBAMOYL phosphate synthase small chain|Saccharolobus solfataricus (strain

Query: 1 EGRPGPF 7
E RPGP+
Sbjct: 345 EARPGPW 351


>sp|AATA_METMP|A-TYPE ATP synthase subunit A|Methanococcus maripaludis (strain DSM 14266

Query: 4 PGPFG 8
PGPFG
Sbjct: 231 PGPFG 235


>sp|TRUD_NATPD|PROBABLE tRNA pseudouridine synthase D|Natronomonas pharaonis (strain ATCC

Query: 2 GRPGPFGDL 10
GRP FGDL
Sbjct: 128 GRPVLFGDL 136


>sp|AATA_PYRHO|A-TYPE ATP synthase subunit A|Pyrococcus horikoshii (strain ATCC 700860

Query: 4 PGPFG 8
PGPFG
Sbjct: 233 PGPFG 237


>sp|AATA_META3|A-TYPE ATP synthase subunit A|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 PGPFG 8
PGPFG
Sbjct: 232 PGPFG 236


>sp|AATA_NANEQ|A-TYPE ATP synthase subunit A|Nanoarchaeum equitans (strain Kin4-M)

Query: 4 PGPFG 8
PGPFG
Sbjct: 222 PGPFG 226


>sp|AATA_METVS|A-TYPE ATP synthase subunit A|Methanococcus vannielii (strain ATCC 35089

Query: 4 PGPFG 8
PGPFG
Sbjct: 231 PGPFG 235


>sp|AATA_METS3|A-TYPE ATP synthase subunit A|Methanobrevibacter smithii (strain ATCC

Query: 4 PGPFG 8
PGPFG
Sbjct: 232 PGPFG 236


>sp|AATA_METBA|A-TYPE ATP synthase subunit A|Methanosarcina barkeri

Query: 4 PGPFG 8
PGPFG
Sbjct: 227 PGPFG 231


>sp|AATA_HYPBU|A-TYPE ATP synthase subunit A|Hyperthermus butylicus (strain DSM 5456

Query: 4 PGPFG 8
PGPFG
Sbjct: 235 PGPFG 239


>sp|CARA_METJA|CARBAMOYL phosphate synthase small chain|Methanocaldococcus jannaschii

Query: 1 EGRPGP 6
E RPGP
Sbjct: 332 EARPGP 337


>sp|AATA_SULTO|A-TYPE ATP synthase subunit A|Sulfurisphaera tokodaii (strain DSM 16993

Query: 4 PGPFG 8
PGPFG
Sbjct: 233 PGPFG 237


>sp|TRUD_HALMA|PROBABLE tRNA pseudouridine synthase D|Haloarcula marismortui (strain ATCC

Query: 2 GRPGPFGDL 10
GRP FGDL
Sbjct: 127 GRPILFGDL 135


>sp|CARA_SULAC|CARBAMOYL phosphate synthase small chain|Sulfolobus acidocaldarius (strain

Query: 1 EGRPGPF 7
E RPGP+
Sbjct: 348 EARPGPW 354


>sp|AATA_METMJ|A-TYPE ATP synthase subunit A|Methanoculleus marisnigri (strain ATCC 35101

Query: 4 PGPFG 8
PGPFG
Sbjct: 233 PGPFG 237


>sp|AATA_THESM|A-TYPE ATP synthase subunit A|Thermococcus sibiricus (strain DSM 12597

Query: 4 PGPFG 8
PGPFG
Sbjct: 230 PGPFG 234


>sp|AATA_METMA|A-TYPE ATP synthase subunit A|Methanosarcina mazei (strain ATCC BAA-159

Query: 4 PGPFG 8
PGPFG
Sbjct: 227 PGPFG 231


>sp|AATA_METLZ|A-TYPE ATP synthase subunit A|Methanocorpusculum labreanum (strain ATCC

Query: 4 PGPFG 8
PGPFG
Sbjct: 231 PGPFG 235


>sp|AATA_METJA|A-TYPE ATP synthase subunit A|Methanocaldococcus jannaschii (strain ATCC

Query: 4 PGPFG 8
PGPFG
Sbjct: 233 PGPFG 237


>sp|AATA_METBF|A-TYPE ATP synthase subunit A|Methanosarcina barkeri (strain Fusaro /

Query: 4 PGPFG 8
PGPFG
Sbjct: 227 PGPFG 231


>sp|AATA_ARCFU|A-TYPE ATP synthase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 PGPFG 8
PGPFG
Sbjct: 233 PGPFG 237


>sp|AATA_METBU|A-TYPE ATP synthase subunit A|Methanococcoides burtonii (strain DSM 6242

Query: 4 PGPFG 8
PGPFG
Sbjct: 227 PGPFG 231


>sp|CARA_SULTO|CARBAMOYL phosphate synthase small chain|Sulfurisphaera tokodaii (strain DSM

Query: 1 EGRPGPF 7
E RPGP+
Sbjct: 349 EARPGPW 355


>sp|AATA_METAC|A-TYPE ATP synthase subunit A|Methanosarcina acetivorans (strain ATCC

Query: 4 PGPFG 8
PGPFG
Sbjct: 227 PGPFG 231


>sp|AATA_METTH|A-TYPE ATP synthase subunit A|Methanothermobacter thermautotrophicus

Query: 4 PGPFG 8
PGPFG
Sbjct: 232 PGPFG 236


>sp|AATA_IGNH4|A-TYPE ATP synthase subunit A|Ignicoccus hospitalis (strain KIN4/I /

Query: 4 PGPFG 8
PGPFG
Sbjct: 240 PGPFG 244


>sp|AATA_THEKO|A-TYPE ATP synthase subunit A|Thermococcus kodakarensis (strain ATCC

Query: 4 PGPFG 8
PGPFG
Sbjct: 230 PGPFG 234


>sp|AATA_THESI|A-TYPE ATP synthase subunit A|Thermococcus sp. (strain KI)

Query: 4 PGPFG 8
PGPFG
Sbjct: 230 PGPFG 234


>sp|AATA_PYRIL|A-TYPE ATP synthase subunit A|Pyrobaculum islandicum (strain DSM 4184

Query: 4 PGPFG 8
PGPFG
Sbjct: 235 PGPFG 239


>sp|AATA_NATPD|A-TYPE ATP synthase subunit A|Natronomonas pharaonis (strain ATCC 35678

Query: 4 PGPFG 8
PGPFG
Sbjct: 236 PGPFG 240


>sp|ARCE_THEKO|ARGININE synthetase ArcE|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 4 PGPFGDL 10
P P+GDL
Sbjct: 161 PMPYGDL 167


>sp|GLK_PYRCJ|GLUCOKINASE calidifontis (strain DSM 21063

Query: 1 EGRPGPFGD 9
E RP FGD
Sbjct: 263 EIRPASFGD 271


>sp|CPGS_METTH|CYCLIC 2,3-diphosphoglycerate synthetase|Methanothermobacter

Query: 2 GRPGPFGD 9
GRP FGD
Sbjct: 62 GRPVHFGD 69


>sp|AATA_HALVD|A-TYPE ATP synthase subunit A|Haloferax volcanii (strain ATCC 29605

Query: 4 PGPFG 8
PGPFG
Sbjct: 237 PGPFG 241


>sp|SYE_IGNH4|GLUTAMATE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 EGRPGPFGDL 10
EG+P P DL
Sbjct: 207 EGKPCPHRDL 216


>sp|ILVB_METJA|PROBABLE acetolactate synthase large subunit|Methanocaldococcus jannaschii

Query: 2 GRPGP 6
GRPGP
Sbjct: 148 GRPGP 152


>sp|DNLI_METTP|DNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 EGRPGPFGDL 10
+GRP PF ++
Sbjct: 303 DGRPLPFQEI 312


>sp|DNLI_METKA|DNA ligase|Methanopyrus kandleri (strain AV19 /

Query: 2 GRPGPFGDL 10
G+P PF +L
Sbjct: 309 GKPRPFQEL 317


>sp|POK_METHJ|PANTOATE kinase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 4 PGPFGDL 10
PGP GD+
Sbjct: 159 PGPDGDI 165


>sp|RL22_PYRAB|LARGE ribosomal subunit protein uL22|Pyrococcus abyssi (strain GE5 /

Query: 2 GRPGPFGD 9
GRP PF +
Sbjct: 134 GRPTPFNE 141


>sp|Y719_METJA|UNCHARACTERIZED ABC transporter ATP-binding protein|Methanocaldococcus jannaschii

Query: 2 GRPGPFG 8
G PG FG
Sbjct: 538 GEPGKFG 544


>sp|CPGS_THEGJ|CYCLIC 2,3-diphosphoglycerate synthetase|Thermococcus gammatolerans

Query: 3 RPGPFGDL 10
RP P GD+
Sbjct: 317 RPRPLGDV 324


>sp|AATA_METKA|A-TYPE ATP synthase subunit A|Methanopyrus kandleri (strain AV19 /

Query: 4 PGPFG 8
PGPFG
Sbjct: 235 PGPFG 239


>sp|AATA_HALWD|A-TYPE ATP synthase subunit A|Haloquadratum walsbyi (strain DSM 16790

Query: 4 PGPFG 8
PGPFG
Sbjct: 236 PGPFG 240


>sp|AATA_HALMA|A-TYPE ATP synthase subunit A|Haloarcula marismortui (strain ATCC 43049

Query: 4 PGPFG 8
PGPFG
Sbjct: 237 PGPFG 241


>sp|AATA_HALSA|A-TYPE ATP synthase subunit A|Halobacterium salinarum (strain ATCC 700922

Query: 4 PGPFG 8
PGPFG
Sbjct: 234 PGPFG 238


>sp|AATA_HALS3|A-TYPE ATP synthase subunit A|Halobacterium salinarum (strain ATCC 29341

Query: 4 PGPFG 8
PGPFG
Sbjct: 234 PGPFG 238


>sp|LEUD_METAC|3-ISOPROPYLMALATE dehydratase small subunit|Methanosarcina acetivorans (strain ATCC

Query: 1 EGRPGPFGD 9
EGR FGD
Sbjct: 2 EGRAWKFGD 10




121|SequenceR|610|601|GLDGKEGRPG

>sp|Y866_ARCFU|UNCHARACTERIZED sugar kinase AF_0866|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 DGKEGRP 9
DGK GRP
Sbjct: 80 DGKTGRP 86


>sp|GATE_METS3|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanobrevibacter smithii (strain ATCC

Query: 1 GLDGKEGRPG 10
GL GKE +PG
Sbjct: 308 GLIGKEVQPG 317


>sp|Y942_METJA|PROBABLE ATP-dependent helicase MJ0942|Methanocaldococcus jannaschii (strain

Query: 1 GLDGKEGR 8
G+DGKE +
Sbjct: 498 GMDGKEAK 505


>sp|HMGCS_THEKO|HYDROXYMETHYLGLUTARYL-COA synthase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 GLDGKEGRPG 10
G D +GRPG
Sbjct: 141 GADTSQGRPG 150


>sp|HMGCS_THESM|HYDROXYMETHYLGLUTARYL-COA synthase|Thermococcus sibiricus (strain DSM 12597

Query: 1 GLDGKEGRPG 10
G D +GRPG
Sbjct: 141 GADTSQGRPG 150


>sp|IF6_THEVO|TRANSLATION initiation factor 6|Thermoplasma volcanium (strain ATCC 51530

Query: 1 GLDGKEGR 8
GLDG +GR
Sbjct: 80 GLDGIDGR 87


>sp|HMGCS_THEON|HYDROXYMETHYLGLUTARYL-COA synthase|Thermococcus onnurineus (strain NA1)

Query: 1 GLDGKEGRPG 10
G D +GRPG
Sbjct: 141 GADTAQGRPG 150


>sp|HMGCS_THEGJ|HYDROXYMETHYLGLUTARYL-COA synthase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 GLDGKEGRPG 10
G D +GRPG
Sbjct: 141 GADTAQGRPG 150


>sp|HMGCS_PYRHO|HYDROXYMETHYLGLUTARYL-COA synthase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 GLDGKEGRPG 10
G D +GRPG
Sbjct: 141 GADTAQGRPG 150


>sp|HMGCS_PYRFU|HYDROXYMETHYLGLUTARYL-COA synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 GLDGKEGRPG 10
G D +GRPG
Sbjct: 141 GADTAQGRPG 150


>sp|RTCA_PYRAB|RNA 3'-terminal phosphate cyclase|Pyrococcus abyssi (strain GE5 /

Query: 2 LDGKEGRPG 10
LDG+ G+PG
Sbjct: 325 LDGEVGKPG 333


>sp|GATE_METVS|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanococcus vannielii (strain ATCC

Query: 1 GLDGKEGRPG 10
GL GKE +PG
Sbjct: 315 GLIGKEVQPG 324


>sp|GATE_METBF|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanosarcina barkeri (strain Fusaro /

Query: 1 GLDGKEGRPG 10
GL GKE +PG
Sbjct: 315 GLVGKEVQPG 324


>sp|CISY_PYRFU|CITRATE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 LDGKEGR 8
+DGKEG+
Sbjct: 24 IDGKEGK 30


>sp|GATE_METJA|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanocaldococcus jannaschii (strain

Query: 1 GLDGKEGRPG 10
GL GKE +PG
Sbjct: 316 GLVGKEIQPG 325


>sp|GATE_THEKO|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Thermococcus kodakarensis (strain ATCC

Query: 1 GLDGKEGRPG 10
GL GKE +PG
Sbjct: 318 GLIGKEIQPG 327


>sp|PYRI_IGNH4|ASPARTATE carbamoyltransferase regulatory chain|Ignicoccus hospitalis

Query: 1 GLDGKEG 7
G+DG EG
Sbjct: 31 GIDGSEG 37


>sp|RPO1N_THECE|DNA-DIRECTED RNA polymerase subunit Rpo1N|Thermococcus celer

Query: 1 GLDGKEGRP 9
GLD ++ RP
Sbjct: 202 GLDAEKARP 210


>sp|GATE_METHJ|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanospirillum hungatei JF-1 (strain

Query: 1 GLDGKEGRPG 10
GL G+E +PG
Sbjct: 304 GLVGREIQPG 313




122|SequenceR|615|606|KEGKEGLDGK

>sp|CAS6A_METJA|CRISPR-ASSOCIATED endoribonuclease Cas6 1|Methanocaldococcus jannaschii (strain

Query: 1 KEGKEGLDGK 10
KEG E +DGK
Sbjct: 69 KEGIETIDGK 78


>sp|DNLI_METAR|DNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 1 KEGKEGLDGK 10
K G EGL GK
Sbjct: 398 KSGNEGLMGK 407




123|SequenceR|620|611|VGRFGKEGKE

>sp|DP2L_METVS|DNA polymerase II large subunit|Methanococcus vannielii (strain ATCC

Query: 2 GRFGKEGKE 10
GRFG+ GKE
Sbjct: 90 GRFGEFGKE 98


>sp|LHRC2_THEBM|ATP-DEPENDENT helicase Lhr-Core protein 2|Thermococcus barophilus (strain DSM

Query: 2 GRFGKEGK 9
G+FG+ GK
Sbjct: 492 GKFGRRGK 499


>sp|RS5_IGNH4|SMALL ribosomal subunit protein uS5|Ignicoccus hospitalis (strain

Query: 1 VGRFGKEGK 9
VGR KEGK
Sbjct: 16 VGRMVKEGK 24


>sp|RS5_AERPE|SMALL ribosomal subunit protein uS5|Aeropyrum pernix (strain ATCC

Query: 1 VGRFGKEGK 9
VGR KEGK
Sbjct: 20 VGRLVKEGK 28


>sp|PURL_PYRAE|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 VGRFGKEGK 9
VGRF EG+
Sbjct: 325 VGRFTAEGR 333


>sp|Y1031_METJA|UNCHARACTERIZED transporter MJ1031|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VGRFGKEG 8
+G FG+EG
Sbjct: 117 LGMFGEEG 124


>sp|H669_METJA|PROBABLE ATP-dependent RNA helicase MJ0669|Methanocaldococcus jannaschii

Query: 2 GRFGKEGK 9
GR GK+GK
Sbjct: 330 GRAGKKGK 337


>sp|DP2S_METTH|DNA polymerase II small subunit|Methanothermobacter

Query: 1 VGRFGKEG 8
+G+F +EG
Sbjct: 5 IGKFAREG 12




124|SequenceR|625|616|GKEGKVGRFG

>sp|KPTA_METMA|PROBABLE RNA 2'-phosphotransferase|Methanosarcina mazei (strain ATCC

Query: 1 GKEGKVGRF 9
G+E K+GRF
Sbjct: 30 GREEKLGRF 38


>sp|DP2L_METMP|DNA polymerase II large subunit|Methanococcus maripaludis (strain DSM

Query: 3 EGKVGRFG 10
EGK G FG
Sbjct: 89 EGKFGEFG 96


>sp|DP2L_METVS|DNA polymerase II large subunit|Methanococcus vannielii (strain ATCC

Query: 3 EGKVGRFG 10
EG+ G FG
Sbjct: 89 EGRFGEFG 96


>sp|ARGDC_CALMQ|ARGININE decarboxylase proenzyme|Caldivirga maquilingensis (strain ATCC

Query: 1 GKEGKVGR 8
G+EG VGR
Sbjct: 15 GEEGVVGR 22


>sp|TOP1_METJA|DNA topoisomerase 1|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KEGKVGRF 9
+EGK G+F
Sbjct: 731 REGKFGKF 738


>sp|RS8_METS5|SMALL ribosomal subunit protein uS8|Metallosphaera sedula (strain ATCC

Query: 2 KEGKVGRF 9
KEG VG F
Sbjct: 43 KEGYVGEF 50


>sp|RS8_SACI7|SMALL ribosomal subunit protein uS8|Saccharolobus islandicus (strain

Query: 2 KEGKVGRF 9
KEG VG F
Sbjct: 43 KEGYVGEF 50


>sp|RS8_SACI6|SMALL ribosomal subunit protein uS8|Saccharolobus islandicus (strain

Query: 2 KEGKVGRF 9
KEG VG F
Sbjct: 43 KEGYVGEF 50


>sp|RS8_SACI4|SMALL ribosomal subunit protein uS8|Saccharolobus islandicus (strain

Query: 2 KEGKVGRF 9
KEG VG F
Sbjct: 43 KEGYVGEF 50


>sp|RS8_SACI3|SMALL ribosomal subunit protein uS8|Saccharolobus islandicus (strain

Query: 2 KEGKVGRF 9
KEG VG F
Sbjct: 43 KEGYVGEF 50


>sp|RS8_SACI2|SMALL ribosomal subunit protein uS8|Saccharolobus islandicus (strain

Query: 2 KEGKVGRF 9
KEG VG F
Sbjct: 43 KEGYVGEF 50


>sp|RS8_SACI1|SMALL ribosomal subunit protein uS8|Saccharolobus islandicus (strain

Query: 2 KEGKVGRF 9
KEG VG F
Sbjct: 43 KEGYVGEF 50


>sp|RS8_SACS2|SMALL ribosomal subunit protein uS8|Saccharolobus solfataricus (strain

Query: 2 KEGKVGRF 9
KEG VG F
Sbjct: 43 KEGYVGEF 50


>sp|DNAG_THEVO|DNA primase DnaG|Thermoplasma volcanium (strain ATCC 51530

Query: 2 KEGKVGR 8
K GK+GR
Sbjct: 64 KSGKIGR 70


>sp|RS8_IGNH4|SMALL ribosomal subunit protein uS8|Ignicoccus hospitalis (strain

Query: 2 KEGKVGRF 9
KEG VG F
Sbjct: 43 KEGYVGEF 50




125|SequenceR|630|621|PQGPEGKEGK

>sp|AOCD_METTH|ORNITHINE cyclodeaminase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 PQGPEGKEG 9
P+ P GK+G
Sbjct: 159 PERPRGKQG 167


>sp|PELO_THEAC|PROTEIN pelota homolog|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 QGPEGKEGK 10
+GPE +GK
Sbjct: 87 EGPEDTKGK 95


>sp|Y213_METKA|UPF0282 protein MK0213|Methanopyrus kandleri (strain AV19 /

Query: 1 PQGPEG 6
P GPEG
Sbjct: 157 PHGPEG 162


>sp|MTD_METTM|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanothermobacter

Query: 4 PEGKEGK 10
P GKEGK
Sbjct: 258 PHGKEGK 264


>sp|KAE1B_METBF|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 QGPEGKE 8
+GPEGK+
Sbjct: 365 EGPEGKK 371


>sp|HEM1_NATPD|GLUTAMYL-TRNA reductase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 PQGPEG 6
P GPEG
Sbjct: 426 PDGPEG 431




126|SequenceR|635|626|LGDLGPQGPE

>sp|RS3A_AERPE|SMALL ribosomal subunit protein eS1|Aeropyrum pernix (strain ATCC 700893

Query: 5 GPQGPE 10
GP GPE
Sbjct: 196 GPNGPE 201


>sp|UVRA_METTH|UVRABC system protein A|Methanothermobacter thermautotrophicus (strain

Query: 3 DLGPQGPE 10
DLGP+G E
Sbjct: 911 DLGPEGGE 918


>sp|SYC_HALSA|CYSTEINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 3 DLGPQGPE 10
+L PQGP+
Sbjct: 164 ELDPQGPD 171


>sp|SRP54_METLZ|SIGNAL recognition particle 54 kDa|Methanocorpusculum labreanum (strain

Query: 2 GDLGPQGP 9
G +GP GP
Sbjct: 438 GGMGPMGP 445


>sp|RNP4_AERPE|RIBONUCLEASE P protein component 4|Aeropyrum pernix (strain ATCC 700893

Query: 3 DLGPQGP 9
D GPQGP
Sbjct: 136 DKGPQGP 142


>sp|RL30_PYRIL|LARGE ribosomal subunit protein uL30|Pyrobaculum islandicum (strain DSM

Query: 2 GDLGPQGP 9
GDLG +GP
Sbjct: 160 GDLGYRGP 167


>sp|RL30_PYRCJ|LARGE ribosomal subunit protein uL30|Pyrobaculum calidifontis (strain DSM

Query: 2 GDLGPQGP 9
GDLG +GP
Sbjct: 162 GDLGYRGP 169


>sp|RL30_PYRAE|LARGE ribosomal subunit protein uL30|Pyrobaculum aerophilum (strain ATCC

Query: 2 GDLGPQGP 9
GDLG +GP
Sbjct: 161 GDLGYRGP 168


>sp|Y746_HALSA|UPF0229 protein VNG_0746C|Halobacterium salinarum (strain ATCC 700922

Query: 2 GDLGPQGPE 10
GDLG GP+
Sbjct: 28 GDLGGSGPD 36


>sp|RL30_PYRNV|LARGE ribosomal subunit protein uL30|Pyrobaculum neutrophilum (strain DSM

Query: 2 GDLGPQGP 9
GDLG +GP
Sbjct: 158 GDLGYRGP 165


>sp|GSA_METBU|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanococcoides burtonii (strain DSM 6242

Query: 1 LGDLGPQGPE 10
LG++GP PE
Sbjct: 207 LGNIGPILPE 216


>sp|RL30_PYRAR|LARGE ribosomal subunit protein uL30|Pyrobaculum arsenaticum (strain DSM

Query: 2 GDLGPQGP 9
GDLG +GP
Sbjct: 159 GDLGYRGP 166


>sp|RL3_PYRAR|LARGE ribosomal subunit protein uL3|Pyrobaculum arsenaticum (strain DSM

Query: 2 GDLGPQGP 9
G +GPQ P
Sbjct: 238 GTIGPQAP 245


>sp|RL3_PYRNV|LARGE ribosomal subunit protein uL3|Pyrobaculum neutrophilum (strain DSM

Query: 2 GDLGPQGP 9
G +GPQ P
Sbjct: 238 GTIGPQAP 245


>sp|ENCP1_PYRFU|FERRITIN-LIKE-ENCAPSULIN shell fusion protein|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LGDLGPQGPE 10
L +LGP+G +
Sbjct: 313 LQELGPEGDD 322


>sp|RL3_ARCFU|LARGE ribosomal subunit protein uL3|Archaeoglobus fulgidus (strain ATCC

Query: 1 LGDLGPQGP 9
+G+LGP P
Sbjct: 228 VGNLGPWNP 236


>sp|ACDA2_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 4 LGPQGP 9
LGP GP
Sbjct: 39 LGPMGP 44


>sp|ACDA3_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 4 LGPQGP 9
LGP GP
Sbjct: 39 LGPMGP 44


>sp|ACDA2_METAC|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 4 LGPQGP 9
LGP GP
Sbjct: 39 LGPMGP 44




127|SequenceR|640|631|QCPADLGDLG

>sp|GATE_AERPE|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Aeropyrum pernix (strain ATCC 700893

Query: 2 CPADLGD 8
CPA+LG+
Sbjct: 31 CPAELGE 37


>sp|Y1648_AERPE|UNCHARACTERIZED protein APE_1648.1|Aeropyrum pernix (strain ATCC 700893

Query: 1 QCPADLGDL 9
+CPADL L
Sbjct: 180 ECPADLARL 188


>sp|CCA_METB6|CCA-ADDING enzyme|Methanoregula boonei (strain DSM 21154

Query: 2 CPADLGDL 9
CPADL L
Sbjct: 271 CPADLAAL 278


>sp|MVK_METTH|MEVALONATE kinase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 QCPADLGDL 9
Q ADLGDL
Sbjct: 161 QFEADLGDL 169


>sp|MFNA_METMA|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanosarcina mazei (strain

Query: 4 ADLGDLG 10
A+LGDLG
Sbjct: 50 ANLGDLG 56


>sp|MFNA_METBF|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanosarcina barkeri

Query: 4 ADLGDLG 10
A+LGDLG
Sbjct: 50 ANLGDLG 56


>sp|MFNA_METAC|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanosarcina acetivorans

Query: 4 ADLGDLG 10
A+LGDLG
Sbjct: 50 ANLGDLG 56


>sp|TRUB_HALMA|PROBABLE tRNA pseudouridine synthase B|Haloarcula marismortui (strain ATCC

Query: 1 QCPADLGDL 9
Q PAD+ D+
Sbjct: 109 QAPADIADI 117


>sp|RNH2_PYRAR|RIBONUCLEASE HII|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 CPADL 6
CPADL
Sbjct: 96 CPADL 100


>sp|SYG_AERPE|GLYCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 1 QCPADLGDLG 10
+CP G+LG
Sbjct: 131 RCPVCQGELG 140


>sp|RADA_METLZ|DNA repair and recombination protein|Methanocorpusculum labreanum

Query: 1 QCPADLGDLG 10
Q P +LG LG
Sbjct: 125 QLPQELGGLG 134


>sp|HCP_METMA|HYDROXYLAMINE reductase|Methanosarcina mazei (strain ATCC BAA-159

Query: 5 DLGDLG 10
DLGD+G
Sbjct: 432 DLGDIG 437


>sp|HCP_METVS|HYDROXYLAMINE reductase|Methanococcus vannielii (strain ATCC 35089

Query: 5 DLGDLG 10
DLGD+G
Sbjct: 435 DLGDIG 440




128|SequenceR|645|636|GDPGLQCPAD

>sp|Y609_METTH|UPF0179 protein MTH_609|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 GDPGLQCPA 9
G PG QCPA
Sbjct: 124 GKPGKQCPA 132


>sp|Y114_METTH|UNCHARACTERIZED protein MTH_114|Methanothermobacter thermautotrophicus (strain

Query: 3 PGLQCPAD 10
P + CP+D
Sbjct: 9 PSMNCPSD 16


>sp|RPO1N_THECE|DNA-DIRECTED RNA polymerase subunit Rpo1N|Thermococcus celer

Query: 2 DPGLQC 7
DPGL+C
Sbjct: 55 DPGLRC 60


>sp|RPO1N_HALSA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 2 DPGLQC 7
DPGL+C
Sbjct: 57 DPGLEC 62


>sp|RPO1N_HALS3|DNA-DIRECTED RNA polymerase subunit Rpo1N|Halobacterium salinarum (strain ATCC

Query: 2 DPGLQC 7
DPGL+C
Sbjct: 57 DPGLEC 62


>sp|RPO12_PYRAR|DNA-DIRECTED RNA polymerase subunit Rpo12|Pyrobaculum arsenaticum (strain DSM

Query: 3 PGLQCP 8
PG++CP
Sbjct: 26 PGIRCP 31


>sp|RPO12_PYRAE|DNA-DIRECTED RNA polymerase subunit Rpo12|Pyrobaculum aerophilum (strain ATCC

Query: 3 PGLQCP 8
PG++CP
Sbjct: 26 PGIRCP 31


>sp|Y578_METJA|UNCHARACTERIZED protein MJ0578|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 GDPGLQCP 8
G PG+ CP
Sbjct: 170 GPPGVGCP 177


>sp|RPO12_PYRCJ|DNA-DIRECTED RNA polymerase subunit Rpo12|Pyrobaculum calidifontis (strain DSM

Query: 3 PGLQCP 8
PG++CP
Sbjct: 26 PGIRCP 31


>sp|ASSY_SACS2|ARGININOSUCCINATE synthase|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 DPGLQCPAD 10
DP L+ P D
Sbjct: 188 DPSLEVPED 196


>sp|MCRAM_METJA|[METHYL coenzyme M reductase]-L-arginine

Query: 1 GDPGLQC 7
G+PG+ C
Sbjct: 12 GEPGINC 18


>sp|RPO12_SACSH|DNA-DIRECTED RNA polymerase subunit Rpo12|Saccharolobus shibatae (strain ATCC

Query: 3 PGLQCP 8
PG++CP
Sbjct: 22 PGVRCP 27


>sp|RPO12_SACS2|DNA-DIRECTED RNA polymerase subunit Rpo12|Saccharolobus solfataricus (strain

Query: 3 PGLQCP 8
PG++CP
Sbjct: 22 PGVRCP 27


>sp|RPO12_SACI7|DNA-DIRECTED RNA polymerase subunit Rpo12|Saccharolobus islandicus (strain

Query: 3 PGLQCP 8
PG++CP
Sbjct: 22 PGVRCP 27


>sp|RPO12_SACI6|DNA-DIRECTED RNA polymerase subunit Rpo12|Saccharolobus islandicus (strain

Query: 3 PGLQCP 8
PG++CP
Sbjct: 22 PGVRCP 27


>sp|RPO12_SACI4|DNA-DIRECTED RNA polymerase subunit Rpo12|Saccharolobus islandicus (strain

Query: 3 PGLQCP 8
PG++CP
Sbjct: 22 PGVRCP 27


>sp|RPO12_SACI3|DNA-DIRECTED RNA polymerase subunit Rpo12|Saccharolobus islandicus (strain

Query: 3 PGLQCP 8
PG++CP
Sbjct: 22 PGVRCP 27


>sp|RPO12_SACI2|DNA-DIRECTED RNA polymerase subunit Rpo12|Saccharolobus islandicus (strain

Query: 3 PGLQCP 8
PG++CP
Sbjct: 22 PGVRCP 27


>sp|RPO12_SACI1|DNA-DIRECTED RNA polymerase subunit Rpo12|Saccharolobus islandicus (strain

Query: 3 PGLQCP 8
PG++CP
Sbjct: 22 PGVRCP 27


>sp|CBID_METHJ|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 GDPGLQCPA 9
GDP + C A
Sbjct: 142 GDPAVSCQA 150


>sp|RPO1N_METJA|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanocaldococcus jannaschii

Query: 2 DPGLQC 7
DPGL C
Sbjct: 57 DPGLVC 62


>sp|RPO12_PYRNV|DNA-DIRECTED RNA polymerase subunit Rpo12|Pyrobaculum neutrophilum (strain DSM

Query: 3 PGLQCP 8
PG++CP
Sbjct: 26 PGIRCP 31


>sp|RFCL_METTH|REPLICATION factor C large subunit|Methanothermobacter thermautotrophicus

Query: 4 GLQCPAD 10
G++CP D
Sbjct: 175 GIECPDD 181


>sp|PUS10_METTM|TRNA pseudouridine synthase Pus10|Methanothermobacter marburgensis

Query: 5 LQCPAD 10
L+CPAD
Sbjct: 130 LRCPAD 135


>sp|RPO1N_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo1N|Sulfolobus acidocaldarius (strain

Query: 2 DPGLQCP 8
+PG +CP
Sbjct: 53 EPGQKCP 59


>sp|SYG_METTH|GLYCINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 DPGLQCP 8
D G++CP
Sbjct: 125 DEGIRCP 131


>sp|HMGCS_METAR|HYDROXYMETHYLGLUTARYL-COA synthase|Methanocella arvoryzae (strain DSM 22066

Query: 3 PGLQCP 8
PGL CP
Sbjct: 257 PGLTCP 262


>sp|RPO1N_SACSH|DNA-DIRECTED RNA polymerase subunit Rpo1N|Saccharolobus shibatae (strain ATCC

Query: 2 DPGLQCP 8
+PG +CP
Sbjct: 53 EPGQKCP 59


>sp|RPO1N_SACS2|DNA-DIRECTED RNA polymerase subunit Rpo1N|Saccharolobus solfataricus (strain

Query: 2 DPGLQCP 8
+PG +CP
Sbjct: 53 EPGQKCP 59


>sp|MCH_METAR|METHENYLTETRAHYDROMETHANOPTERIN cyclohydrolase|Methanocella arvoryzae (strain DSM 22066

Query: 2 DPGLQCPAD 10
DPG+ PA+
Sbjct: 279 DPGIFAPAE 287


>sp|RPO12_SULTO|DNA-DIRECTED RNA polymerase subunit Rpo12|Sulfurisphaera tokodaii (strain DSM

Query: 3 PGLQCP 8
PG++CP
Sbjct: 22 PGVRCP 27


>sp|RPO1N_METVS|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanococcus vannielii (strain ATCC

Query: 2 DPGLQCPA 9
DPGL C +
Sbjct: 57 DPGLVCKS 64


>sp|RPO12_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo12|Sulfolobus acidocaldarius (strain

Query: 3 PGLQCP 8
PG++CP
Sbjct: 22 PGVRCP 27




129|SequenceR|654|641|KQWCGPMPLGDPGL

>sp|Y738_METTH|UNCHARACTERIZED protein MTH_738|Methanothermobacter thermautotrophicus (strain ATCC

Query: 4 CGPMPLGDPGL 14
CGP P+ +P L
Sbjct: 205 CGPTPMMNPPL 215


>sp|Y1487_METJA|UNCHARACTERIZED methyltransferase MJ1487|Methanocaldococcus jannaschii (strain ATCC

Query: 5 GPMPLGDP 12
GP P GDP
Sbjct: 96 GPHPTGDP 103


>sp|PROF2_LOKSG|LOKI profilin-2|Lokiarchaeum sp. (strain GC14_75)

Query: 6 PMPLGDPG 13
P+P+G PG
Sbjct: 97 PIPIGGPG 104


>sp|MUTL_METMJ|DNA mismatch repair protein MutL|Methanoculleus marisnigri (strain ATCC

Query: 6 PMPLGDPG 13
P P+G+PG
Sbjct: 359 PSPVGEPG 366


>sp|Y1111_PYRAE|UNCHARACTERIZED protein PAE1111|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 KQWC---GPMPLGD 11
++W GP+P+GD
Sbjct: 56 REWVRKHGPVPVGD 69


>sp|Y1154_METLZ|UPF0173 metal-dependent hydrolase Mlab_1154|Methanocorpusculum labreanum

Query: 6 PMPLGDPG 13
PMPL DP
Sbjct: 23 PMPLEDPA 30


>sp|Y676_METJA|PUTATIVE hydrogenase expression/formation protein MJ0676|Methanocaldococcus

Query: 7 MPLGDP 12
MP+GDP
Sbjct: 325 MPIGDP 330


>sp|PAN1_HALSA|PROTEASOME-ACTIVATING nucleotidase 1|Halobacterium salinarum (strain ATCC 700922

Query: 7 MPLGDPGL 14
+P+ DPGL
Sbjct: 166 LPMKDPGL 173


>sp|SYW1_HALSA|TRYPTOPHAN--TRNA ligase 1|Halobacterium salinarum (strain ATCC 700922

Query: 5 GPMPLGDP 12
G MP GDP
Sbjct: 83 GFMPTGDP 90


>sp|MFNA_METVS|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcus vannielii

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 49 LGDPGL 54


>sp|MFNA_METST|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanosphaera stadtmanae

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 54 LGDPGL 59


>sp|MFNA_METS3|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanobrevibacter smithii

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 54 LGDPGL 59


>sp|MFNA_METMP|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcus maripaludis

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 49 LGDPGL 54


>sp|MFNA_METM7|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcus maripaludis

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 49 LGDPGL 54


>sp|MFNA_METM5|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcus maripaludis

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 49 LGDPGL 54


>sp|MFNA_METJA|L-TYROSINE/L-ASPARTATE decarboxylase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 57 LGDPGL 62


>sp|MFNA_META3|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcus aeolicus

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 49 LGDPGL 54


>sp|MFNA_METTH|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanothermobacter

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 32 LGDPGL 37


>sp|DP2L_NANEQ|DNA polymerase II large subunit|Nanoarchaeum equitans (strain Kin4-M)

Query: 1 KQWCGPMPLGD 11
K+ CG + LGD
Sbjct: 1068 KKQCGILTLGD 1078


>sp|MFNA_PYRAB|PROBABLE L-aspartate decarboxylase|Pyrococcus abyssi (strain GE5 /

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 57 LGDPGL 62


>sp|Y378_NANEQ|UPF0173 metal-dependent hydrolase NEQ378|Nanoarchaeum equitans (strain

Query: 8 PLGDPG 13
PLG+PG
Sbjct: 109 PLGNPG 114


>sp|MFNA_PYRHO|L-ASPARTATE/L-GLUTAMATE decarboxylase|Pyrococcus horikoshii (strain ATCC 700860

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 56 LGDPGL 61


>sp|MFNA_METTP|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanothrix

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 55 LGDPGL 60


>sp|MFNA_THEGJ|PROBABLE L-aspartate decarboxylase|Thermococcus gammatolerans (strain DSM

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 55 LGDPGL 60


>sp|HISX_PICTO|HISTIDINOL dehydrogenase|Picrophilus torridus (strain ATCC 700027

Query: 5 GPMPLGD 11
GP+P GD
Sbjct: 302 GPVPAGD 308


>sp|GGR_META3|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 4 CGPMPLGDP 12
CG P+G P
Sbjct: 257 CGGAPVGGP 265


>sp|MFNA_METLZ|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanocorpusculum labreanum

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 52 LGDPGL 57


>sp|GUAAB_METBU|GMP synthase [glutamine-hydrolyzing] subunit B|Methanococcoides

Query: 1 KQWCGPMPLGDPGL 14
++ C MP PGL
Sbjct: 178 EEICERMPFPGPGL 191


>sp|MFNA_THEKO|L-ASPARTATE decarboxylase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 55 LGDPGL 60


>sp|NTPTH_AERPE|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Aeropyrum pernix (strain ATCC 700893

Query: 5 GPMPLGDPGL 14
GPM L PG
Sbjct: 129 GPMELAVPGF 138


>sp|MFNA_METPE|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanosphaerula palustris

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 52 LGDPGL 57


>sp|GUAAB_METAC|GMP synthase [glutamine-hydrolyzing] subunit B|Methanosarcina

Query: 1 KQWCGPMPLGDPGL 14
++ C MP PGL
Sbjct: 179 EEICERMPFPGPGL 192


>sp|GCSH2_SULAC|PROBABLE glycine cleavage system H|Sulfolobus acidocaldarius (strain ATCC

Query: 2 QWCGPMP 8
+W GP+P
Sbjct: 73 KWAGPVP 79


>sp|MFNA_METHJ|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanospirillum hungatei

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 52 LGDPGL 57


>sp|GUAAB_METMA|GMP synthase [glutamine-hydrolyzing] subunit B|Methanosarcina mazei

Query: 4 CGPMPLGDPGL 14
C MP PGL
Sbjct: 182 CERMPFPGPGL 192


>sp|MFNA_METBU|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanococcoides burtonii

Query: 9 LGDPGL 14
+GDPGL
Sbjct: 52 MGDPGL 57


>sp|MFNA_PYRFU|PROBABLE L-aspartate decarboxylase|Pyrococcus furiosus (strain ATCC 43587

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 56 LGDPGL 61


>sp|GUAAB_METBF|GMP synthase [glutamine-hydrolyzing] subunit B|Methanosarcina barkeri

Query: 4 CGPMPLGDPGL 14
C MP PGL
Sbjct: 182 CERMPFPGPGL 192


>sp|MFNA_METMJ|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanoculleus marisnigri

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 52 LGDPGL 57


>sp|GCSPB_STAMF|PROBABLE glycine dehydrogenase (decarboxylating) subunit|Staphylothermus

Query: 5 GPMPLG 10
GP+PLG
Sbjct: 78 GPVPLG 83


>sp|Y727_METTH|UPF0280 protein MTH_727|Methanothermobacter thermautotrophicus (strain

Query: 1 KQWCGPM 7
+ WCG M
Sbjct: 12 ESWCGTM 18


>sp|MFNA_ARCFU|PROBABLE L-aspartate decarboxylase|Archaeoglobus fulgidus (strain ATCC

Query: 9 LGDPGL 14
LGDPG+
Sbjct: 44 LGDPGI 49


>sp|COXX2_PYRCJ|PROTOHEME IX farnesyltransferase 2|Pyrobaculum calidifontis (strain DSM 21063

Query: 3 WCGPMP 8
W GP+P
Sbjct: 101 WLGPLP 106


>sp|MFNA_METB6|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanoregula boonei (strain

Query: 9 LGDPGL 14
LGDPGL
Sbjct: 52 LGDPGL 57


>sp|GCSH2_SACS2|PROBABLE glycine cleavage system H|Saccharolobus solfataricus (strain ATCC

Query: 2 QWCGPMP 8
+W GP+P
Sbjct: 73 KWAGPVP 79


>sp|GCSH2_SULTO|PROBABLE glycine cleavage system H|Sulfurisphaera tokodaii (strain DSM

Query: 2 QWCGPMP 8
+W GP+P
Sbjct: 73 KWAGPVP 79


>sp|DSRB_ARCFU|SULFITE reductase, dissimilatory-type subunit beta|Archaeoglobus fulgidus

Query: 4 CGPMPLGDP 12
C MPL DP
Sbjct: 251 CPGMPLFDP 259




THE END