CASP4_HUMAN Blast Output
Archaea
1|Sequence|1|10|MAEGNHRKKP

>sp|TOP6A_SACSH|TYPE 2 DNA topoisomerase 6|Saccharolobus shibatae (strain ATCC 51178

Query: 4 GNHRKKP 10
GN RKKP
Sbjct: 304 GNSRKKP 310


>sp|SUI1_METVA|PROTEIN translation factor SUI1 homolog|Methanococcus vannielii

Query: 3 EGNHRKK 9
+G+HRKK
Sbjct: 78 QGDHRKK 84


>sp|SYFB_AERPE|PHENYLALANINE--TRNA ligase beta subunit|Aeropyrum pernix (strain ATCC 700893

Query: 3 EGNHRKKP 10
E HR+KP
Sbjct: 427 ENQHRRKP 434


>sp|Y1394_METJA|UNCHARACTERIZED protein MJ1394|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MAEGNH 6
+AEGNH
Sbjct: 869 IAEGNH 874


>sp|Y1393_METJA|UNCHARACTERIZED protein MJ1393|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 MAEGNH 6
+AEGNH
Sbjct: 494 IAEGNH 499


>sp|SUI1_METJA|PROTEIN translation factor SUI1 homolog|Methanocaldococcus jannaschii

Query: 3 EGNHRKK 9
+G+HRKK
Sbjct: 79 QGDHRKK 85


>sp|RS3A_THEON|SMALL ribosomal subunit protein eS1|Thermococcus onnurineus (strain

Query: 1 MAEGNHRKK 9
MA+GN RK+
Sbjct: 1 MAKGNPRKR 9


>sp|RS3A_THEKO|SMALL ribosomal subunit protein eS1|Thermococcus kodakarensis (strain

Query: 1 MAEGNHRKK 9
MA GN RK+
Sbjct: 1 MARGNPRKR 9


>sp|CFBA_META3|SIROHYDROCHLORIN cobaltochelatase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 MAEGNHRKK 9
+A GNH K+
Sbjct: 70 LAHGNHTKR 78




2|Sequence|6|15|HRKKPLKVLE

>sp|SYFB_AERPE|PHENYLALANINE--TRNA ligase beta subunit|Aeropyrum pernix (strain ATCC 700893

Query: 1 HRKKPLKVLE 10
HR+KP+KV E
Sbjct: 430 HRRKPVKVFE 439


>sp|RGYR1_AERPE|REVERSE gyrase 1|Aeropyrum pernix (strain ATCC 700893

Query: 1 HRKKPLKVLE 10
H KKPL++L+
Sbjct: 398 HAKKPLELLD 407


>sp|RNP2_METM5|RIBONUCLEASE P protein component 2|Methanococcus maripaludis (strain C5 /

Query: 1 HRKKPLKV 8
HRKKP+ +
Sbjct: 85 HRKKPINI 92


>sp|RNP2_METM6|RIBONUCLEASE P protein component 2|Methanococcus maripaludis (strain C6 /

Query: 1 HRKKPLKV 8
HRKKP+ +
Sbjct: 85 HRKKPINI 92


>sp|GLMM_METTH|PROBABLE phosphoglucosamine mutase|Methanothermobacter thermautotrophicus

Query: 3 KKPLKVL 9
KKPLKV+
Sbjct: 168 KKPLKVV 174


>sp|RNP2_METM7|RIBONUCLEASE P protein component 2|Methanococcus maripaludis (strain C7 /

Query: 1 HRKKPLKV 8
HRKKP+ +
Sbjct: 85 HRKKPINI 92


>sp|CPGS_PYRAB|CYCLIC 2,3-diphosphoglycerate synthetase|Pyrococcus abyssi (strain GE5 /

Query: 1 HRKKPLKVLE 10
H K P K LE
Sbjct: 52 HDKDPFKALE 61




3|Sequence|11|20|LKVLESLGKD

>sp|LEUC_PYRNV|3-ISOPROPYLMALATE dehydratase large subunit|Pyrobaculum neutrophilum (strain DSM

Query: 1 LKVLESLGK 9
L+VLES+GK
Sbjct: 41 LEVLESMGK 49


>sp|LEUC_PYRIL|3-ISOPROPYLMALATE dehydratase large subunit|Pyrobaculum islandicum (strain DSM 4184

Query: 1 LKVLESLGK 9
L+VLES+GK
Sbjct: 41 LEVLESMGK 49


>sp|LEUC_PYRAE|3-ISOPROPYLMALATE dehydratase large subunit|Pyrobaculum aerophilum (strain ATCC

Query: 1 LKVLESLGK 9
L+VLES+GK
Sbjct: 41 LEVLESMGK 49


>sp|CCA_METB6|CCA-ADDING enzyme|Methanoregula boonei (strain DSM 21154

Query: 3 VLESLGKD 10
V ESLGKD
Sbjct: 414 VRESLGKD 421


>sp|LEUC_PYRCJ|3-ISOPROPYLMALATE dehydratase large subunit|Pyrobaculum calidifontis (strain DSM

Query: 1 LKVLESLGK 9
L+VLE +GK
Sbjct: 41 LEVLEQMGK 49


>sp|PDXS_THEKO|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermococcus kodakarensis

Query: 2 KVLESLGKD 10
K+LE+LG D
Sbjct: 97 KILEALGVD 105


>sp|SYY1_PYRAE|TYROSINE--TRNA ligase 1|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 KVLESLGKD 10
KV+E+LG D
Sbjct: 104 KVIETLGGD 112


>sp|LEUC_PYRAR|3-ISOPROPYLMALATE dehydratase large subunit|Pyrobaculum arsenaticum (strain DSM

Query: 1 LKVLESLGK 9
L+VLE +GK
Sbjct: 41 LEVLEHMGK 49


>sp|OGG1_KORCO|8-OXOGUANINE DNA glycosylase/AP lyase|Korarchaeum cryptofilum (strain OPF8)

Query: 1 LKVLESLG 8
L++LESLG
Sbjct: 57 LRILESLG 64


>sp|SYA_HALLT|ALANINE--TRNA ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 2 KVLESLGKD 10
K+ ESLG D
Sbjct: 183 KLFESLGAD 191


>sp|PDXS_METS5|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Metallosphaera sedula (strain

Query: 2 KVLESLGKD 10
KVLE+LG D
Sbjct: 132 KVLEALGVD 140


>sp|G6PI_HALWD|PROBABLE glucose-6-phosphate isomerase|Haloquadratum walsbyi (strain DSM

Query: 5 ESLGKD 10
ESLGKD
Sbjct: 271 ESLGKD 276


>sp|AROA_PYRAB|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 1 LKVLESLG 8
LKV+ES G
Sbjct: 194 LKVMESFG 201


>sp|SYR_THEKO|ARGININE--TRNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 KVLESLGKD 10
+VLES G+D
Sbjct: 571 EVLESAGRD 579


>sp|PDXS_THEON|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Thermococcus onnurineus (strain

Query: 2 KVLESLGKD 10
+VLE+LG D
Sbjct: 97 RVLEALGVD 105


>sp|HMD_METVO|5,10-METHENYLTETRAHYDROMETHANOPTERIN hydrogenase|Methanococcus voltae

Query: 1 LKVLESLGK 9
LKVLE GK
Sbjct: 334 LKVLEKHGK 342


>sp|PDXS_HALWD|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Haloquadratum walsbyi (strain

Query: 2 KVLESLGKD 10
++LESLG D
Sbjct: 99 EILESLGVD 107


>sp|G6PI_HALSA|PROBABLE glucose-6-phosphate isomerase|Halobacterium salinarum (strain ATCC

Query: 5 ESLGKD 10
ESLGKD
Sbjct: 272 ESLGKD 277


>sp|G6PI_NATPD|PROBABLE glucose-6-phosphate isomerase|Natronomonas pharaonis (strain ATCC

Query: 5 ESLGKD 10
ESLGKD
Sbjct: 269 ESLGKD 274


>sp|PDXS_HALLT|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Halorubrum lacusprofundi (strain

Query: 2 KVLESLGKD 10
++LESLG D
Sbjct: 99 EILESLGVD 107


>sp|PDXS_SULTO|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Sulfurisphaera tokodaii (strain

Query: 2 KVLESLGKD 10
K+LE+LG D
Sbjct: 111 KILEALGVD 119


>sp|RS3A_SACS2|SMALL ribosomal subunit protein eS1|Saccharolobus solfataricus (strain

Query: 1 LKVLESLGK 9
LKV E+LGK
Sbjct: 190 LKVPENLGK 198


>sp|RS3A_SACI7|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 LKVLESLGK 9
LKV E+LGK
Sbjct: 190 LKVPENLGK 198


>sp|RS3A_SACI6|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 LKVLESLGK 9
LKV E+LGK
Sbjct: 190 LKVPENLGK 198


>sp|RS3A_SACI4|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 LKVLESLGK 9
LKV E+LGK
Sbjct: 190 LKVPENLGK 198


>sp|RS3A_SACI3|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 LKVLESLGK 9
LKV E+LGK
Sbjct: 190 LKVPENLGK 198


>sp|RS3A_SACI2|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 LKVLESLGK 9
LKV E+LGK
Sbjct: 190 LKVPENLGK 198


>sp|RS3A_SACI1|SMALL ribosomal subunit protein eS1|Saccharolobus islandicus (strain

Query: 1 LKVLESLGK 9
LKV E+LGK
Sbjct: 190 LKVPENLGK 198


>sp|AROA_NATPD|3-PHOSPHOSHIKIMATE 1-carboxyvinyltransferase|Natronomonas pharaonis (strain ATCC 35678

Query: 1 LKVLESLGKD 10
+ +LES+G D
Sbjct: 282 VSILESMGAD 291


>sp|VORA_PYRHO|KETOISOVALERATE oxidoreductase subunit VorA|Pyrococcus horikoshii (strain ATCC

Query: 2 KVLESLGKD 10
KV++S+GK+
Sbjct: 235 KVIKSVGKE 243


>sp|G6PI_HALMA|PROBABLE glucose-6-phosphate isomerase|Haloarcula marismortui (strain ATCC

Query: 5 ESLGKD 10
ESLGKD
Sbjct: 272 ESLGKD 277


>sp|PDXS_PICTO|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Picrophilus torridus (strain

Query: 3 VLESLGKD 10
VLESLG D
Sbjct: 101 VLESLGVD 108




4|Sequence|16|25|SLGKDFLTGV

>sp|RIFK_PYRAR|RIBOFLAVIN kinase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 3 GKDFLTGV 10
G+DFL+G+
Sbjct: 62 GRDFLSGI 69


>sp|TOP1_ARCFU|DNA topoisomerase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 LGKDFLT 8
+GKDFL+
Sbjct: 187 MGKDFLS 193


>sp|DPOL_THEAG|DNA polymerase|Thermococcus aggregans

Query: 1 SLGKDFLTG 9
SL K FL+G
Sbjct: 486 SLAKSFLSG 494


>sp|RPE_METJA|RIBULOSE-PHOSPHATE 3-epimerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 SLGKDFLT 8
+L KDFLT
Sbjct: 217 ALNKDFLT 224


>sp|SYV_PYRAE|VALINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 GKDFLTGV 10
GK+FLT V
Sbjct: 580 GKEFLTKV 587


>sp|PCNA_METBF|DNA polymerase sliding clamp|Methanosarcina barkeri (strain Fusaro /

Query: 1 SLGKDF 6
SLGKDF
Sbjct: 214 SLGKDF 219


>sp|SYFA_METS5|PHENYLALANINE--TRNA ligase alpha subunit|Metallosphaera sedula (strain ATCC 51363

Query: 1 SLGKDFLTG 9
+LGKDF G
Sbjct: 95 ALGKDFEIG 103


>sp|Y1865_ARCFU|UNCHARACTERIZED protein AF_1865|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 LGKDFLT 8
LGK FLT
Sbjct: 256 LGKQFLT 262




5|Sequence|21|30|FLTGVLDNLV

>sp|Y1302_METJA|UNCHARACTERIZED polyferredoxin-like protein MJ1302|Methanocaldococcus jannaschii

Query: 1 FLTGVLDNL 9
FLTG+ +NL
Sbjct: 15 FLTGIYENL 23


>sp|RPO1C_METTW|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanothermobacter thermautotrophicus

Query: 2 LTGVLDNLV 10
LTG+++N++
Sbjct: 423 LTGIIENII 431


>sp|RPO1C_METTH|DNA-DIRECTED RNA polymerase subunit Rpo1C|Methanothermobacter thermautotrophicus

Query: 2 LTGVLDNLV 10
LTG+++N++
Sbjct: 423 LTGIIENII 431




6|Sequence|26|35|LDNLVEQNVL

>sp|TRM1_META3|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanococcus aeolicus

Query: 1 LDNLVEQNV 9
LDNL ++N+
Sbjct: 271 LDNLTDENI 279


>sp|COBQ_METMA|PROBABLE cobyric acid synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LDNLVEQNV 9
L N+VEQN+
Sbjct: 466 LANVVEQNI 474


>sp|COBQ_METBF|PROBABLE cobyric acid synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 LDNLVEQNV 9
L N+VEQN+
Sbjct: 466 LANVVEQNL 474


>sp|UPP_HALWD|URACIL phosphoribosyltransferase|Haloquadratum walsbyi (strain DSM 16790

Query: 1 LDNLVEQNVL 10
LDN+V NVL
Sbjct: 76 LDNIVIVNVL 85




7|Sequence|31|40|EQNVLNWKEE

>sp|ASPD_METBU|L-ASPARTATE dehydrogenase|Methanococcoides burtonii (strain DSM 6242

Query: 1 EQNVLNWKEE 10
EQ+++N KE+
Sbjct: 37 EQSIINLKEQ 46


>sp|TOP1_ARCFU|DNA topoisomerase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 NVLNWKEE 10
N LNWK+E
Sbjct: 654 NYLNWKKE 661


>sp|Y378_METTH|UPF0104 membrane protein MTH_378|Methanothermobacter thermautotrophicus

Query: 4 VLNWKEE 10
++NW+EE
Sbjct: 160 LVNWREE 166


>sp|THIC_PYRFU|PHOSPHOMETHYLPYRIMIDINE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 5 LNWKEE 10
LNWKE+
Sbjct: 378 LNWKEQ 383


>sp|Y978_PYRFU|UPF0252 protein PF0978|Pyrococcus furiosus (strain ATCC 43587

Query: 3 NVLNWKEE 10
N+L W+EE
Sbjct: 73 NILKWEEE 80


>sp|PURP_METAR|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanocella arvoryzae (strain DSM

Query: 2 QNVLNWKEE 10
+N+L W+ E
Sbjct: 120 RNILRWEAE 128


>sp|HPPA_PYRAE|K(+)-INSENSITIVE pyrophosphate-energized proton pump|Pyrobaculum aerophilum (strain

Query: 4 VLNWKEE 10
+L WKE+
Sbjct: 575 ILEWKEQ 581


>sp|SYA_METTH|ALANINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 1 EQNVLNWKEE 10
E N + W+EE
Sbjct: 151 EDNTVYWEEE 160


>sp|RFRNP_HALMA|RNA-FREE ribonuclease P|Haloarcula marismortui (strain ATCC 43049

Query: 1 EQNVLNWKEE 10
+Q ++NW E+
Sbjct: 184 DQGIINWAED 193




8|Sequence|36|45|NWKEEEKKKY

>sp|Y678_METJA|UNCHARACTERIZED protein MJ0678|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 WKEEEKKKY 10
WK+EE +KY
Sbjct: 290 WKKEEARKY 298


>sp|KAE1_IGNH4|TRNA N6-adenosine threonylcarbamoyltransferase|Ignicoccus hospitalis

Query: 2 WKEEEKKK 9
WK+E+KKK
Sbjct: 216 WKKEDKKK 223


>sp|LEUC_METAC|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina

Query: 2 WKEEEKKKY 10
WK +E+ KY
Sbjct: 250 WKSDEEAKY 258


>sp|LEUC_METMA|PROBABLE 3-isopropylmalate dehydratase large subunit|Methanosarcina mazei

Query: 2 WKEEEKKKY 10
WK +E KY
Sbjct: 250 WKSDEGAKY 258


>sp|MCRA_METFE|METHYL-COENZYME M reductase subunit alpha|Methanothermus fervidus

Query: 2 WKEEEKKK 9
WK+ E+KK
Sbjct: 34 WKQSERKK 41


>sp|MCRA_METKA|METHYL-COENZYME M reductase I subunit|Methanopyrus kandleri (strain AV19 /

Query: 2 WKEEEKKK 9
WK+ E+KK
Sbjct: 34 WKQSERKK 41


>sp|APGM_PYRAB|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrococcus abyssi (strain GE5 /

Query: 1 NWKEEEKKK 9
+W++EE KK
Sbjct: 177 SWEDEESKK 185


>sp|AATB_AERPE|A-TYPE ATP synthase subunit B|Aeropyrum pernix (strain ATCC 700893

Query: 1 NWKEEEKKKY 10
N KEE KKY
Sbjct: 447 NIKEETIKKY 456


>sp|Y378_METTH|UPF0104 membrane protein MTH_378|Methanothermobacter thermautotrophicus

Query: 1 NWKEEE 6
NW+EE+
Sbjct: 162 NWREEK 167


>sp|APGM_THEKO|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Thermococcus kodakarensis (strain ATCC

Query: 2 WKEEEKKK 9
W++EE KK
Sbjct: 179 WEDEESKK 186


>sp|SAHH_ARCFU|ADENOSYLHOMOCYSTEINASE fulgidus (strain ATCC 49558

Query: 1 NWKEEEKKKY 10
NW++ E+K Y
Sbjct: 356 NWQKLERKVY 365


>sp|SODF_METTH|SUPEROXIDE dismutase [Fe]|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 NWKEEEKK 8
NWKE EK+
Sbjct: 193 NWKEVEKR 200


>sp|MCRX_METFV|METHYL-COENZYME M reductase II subunit|Methanothermus fervidus (strain ATCC 43054

Query: 2 WKEEEKKK 9
WK+ E+K+
Sbjct: 35 WKQSERKR 42


>sp|SODF_METTM|SUPEROXIDE dismutase [Fe]|Methanothermobacter marburgensis (strain ATCC

Query: 1 NWKEEEKK 8
NWKE EK+
Sbjct: 190 NWKEVEKR 197


>sp|Y1566_ARCFU|UNCHARACTERIZED protein AF_1566|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 WKEEEK 7
W EEEK
Sbjct: 83 WTEEEK 88


>sp|MCRA_METTH|METHYL-COENZYME M reductase subunit alpha|Methanothermobacter thermautotrophicus

Query: 2 WKEEEKK 8
WK+ E+K
Sbjct: 31 WKQSERK 37




9|Sequence|41|50|EKKKYYDAKT

>sp|MUTS_METBU|DNA mismatch repair protein MutS|Methanococcoides burtonii (strain

Query: 3 KKYYDAK 9
K+YYDAK
Sbjct: 9 KQYYDAK 15


>sp|ACDA1_METTE|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina

Query: 1 EKKKYYDAKT 10
EK K YDA++
Sbjct: 673 EKWKVYDARS 682


>sp|PUR7_METAC|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 EKKKYYDAK 9
EKK YY+A+
Sbjct: 43 EKKGYYNAQ 51


>sp|PUR7_METBF|PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 1 EKKKYYDAK 9
EKK YY+A+
Sbjct: 43 EKKGYYNAQ 51


>sp|ACDA_METBU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanococcoides

Query: 1 EKKKYYDAK 9
EK K YDA+
Sbjct: 669 EKWKVYDAR 677


>sp|RS4E_PYRCJ|SMALL ribosomal subunit protein eS4|Pyrobaculum calidifontis (strain DSM

Query: 1 EKKKYYDAK 9
++ KYYD K
Sbjct: 100 DEAKYYDLK 108




10|Sequence|46|55|YDAKTEDKVR

>sp|ACDA2_ARCFU|ACETYL-COA decarbonylase/synthase complex subunit alpha|Archaeoglobus fulgidus

Query: 1 YDAKTEDKVR 10
YDA+T +KVR
Sbjct: 666 YDARTGEKVR 675


>sp|FAE_METBF|5,6,7,8-TETRAHYDROMETHANOPTERIN hydro-lyase|Methanosarcina barkeri (strain Fusaro /

Query: 1 YDAKTEDKV 9
+DAK +DKV
Sbjct: 133 WDAKDKDKV 141




11|Sequence|51|60|EDKVRVMADS

>sp|KHSE_THEVO|HOMOSERINE kinase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 DKVRVMAD 9
DK+R++AD
Sbjct: 41 DKLRILAD 48


>sp|Y1747_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 1 EDKVRVMADS 10
E+K++ +ADS
Sbjct: 426 EEKIKKLADS 435




12|Sequence|56|65|VMADSMQEKQ

>sp|AATA_SULTO|A-TYPE ATP synthase subunit A|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 VMADSMQEKQ 10
V+AD M+E Q
Sbjct: 15 VIADGMREAQ 24




13|Sequence|61|70|MQEKQRMAGQ

***** No hits found ******


14|Sequence|66|75|RMAGQMLLQT

***** No hits found ******


15|Sequence|71|80|MLLQTFFNID

>sp|Y504_METJA|UNCHARACTERIZED protein MJ0504|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 LQTFFNID 10
+ TFFNI+
Sbjct: 170 MNTFFNIE 177


>sp|DP2L_HALWD|DNA polymerase II large subunit|Haloquadratum walsbyi (strain DSM 16790

Query: 5 TFFNID 10
TF+NID
Sbjct: 1252 TFYNID 1257


>sp|Y1446_ARCFU|UNCHARACTERIZED protein AF_1446|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 LQTFFNID 10
L TFF+ID
Sbjct: 42 LWTFFDID 49




16|Sequence|76|85|FFNIDQISPN

>sp|Y298_METJA|UNCHARACTERIZED protein MJ0298|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 FNIDQISPN 10
+NID++SP+
Sbjct: 31 YNIDKVSPD 39


>sp|ATGT_HALVD|TRNA-GUANINE(15) transglycosylase|Haloferax volcanii (strain ATCC 29605

Query: 3 NIDQISP 9
NID ISP
Sbjct: 40 NIDTISP 46


>sp|PSA_THEVO|PROTEASOME subunit alpha|Thermoplasma volcanium (strain ATCC 51530

Query: 1 FFNIDQISP 9
F IDQI P
Sbjct: 138 FAGIDQIGP 146


>sp|PSA_THEAC|PROTEASOME subunit alpha|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 FFNIDQISP 9
F IDQI P
Sbjct: 138 FAGIDQIGP 146




17|Sequence|81|90|QISPNKKAHP

>sp|Y1226_METJA|PUTATIVE cation-transporting ATPase MJ1226|Methanocaldococcus jannaschii

Query: 4 PNKKAHP 10
P KK HP
Sbjct: 41 PEKKVHP 47


>sp|G3PP_PYRHO|GLYCERALDEHYDE 3-phosphate phosphatase|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 SPNKKAHP 10
S NKK HP
Sbjct: 229 SSNKKVHP 236


>sp|IDSA_METJA|SHORT chain isoprenyl diphosphate synthase|Methanocaldococcus jannaschii

Query: 1 QISPNKKAH 9
+I NKKAH
Sbjct: 128 RIKDNKKAH 136


>sp|FENR_PICTO|FERREDOXIN--NADP reductase|Picrophilus torridus (strain ATCC 700027

Query: 1 QISPNKKA 8
Q+SPNK+
Sbjct: 258 QLSPNKRG 265


>sp|SYG_METTP|GLYCINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 ISPNKKAHP 10
I P K HP
Sbjct: 217 IDPRNKQHP 225


>sp|Y002_METMP|UPF0425 pyridoxal phosphate-dependent protein MMP0002|Methanococcus

Query: 4 PNKKAHP 10
P K AHP
Sbjct: 108 PEKPAHP 114


>sp|Y952_ARCFU|UNCHARACTERIZED protein AF_0952|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 ISPNKKA 8
+SPNKK
Sbjct: 117 VSPNKKG 123


>sp|SYA_THEAC|ALANINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 ISPNKKA 8
ISP+KKA
Sbjct: 838 ISPSKKA 844




18|Sequence|86|95|KKAHPNMEAG

>sp|ATGT_ARCFU|TRNA-GUANINE(15) transglycosylase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 KAHPNMEAG 10
+AHPNM AG
Sbjct: 331 RAHPNMLAG 339


>sp|PHSG_THELN|MALTODEXTRIN phosphorylase|Thermococcus litoralis (strain ATCC 51850

Query: 2 KAHPNMEAG 10
KAHP EAG
Sbjct: 526 KAHPRDEAG 534


>sp|HEM3_NITMS|PROBABLE porphobilinogen deaminase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 KKAHPNME 8
KKAHP+ E
Sbjct: 25 KKAHPDTE 32


>sp|SYI_AERPE|ISOLEUCINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 3 AHPNME 8
AHP+ME
Sbjct: 244 AHPDME 249


>sp|CBID_METHJ|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 KKAHPNM 7
K AHPN+
Sbjct: 313 KSAHPNV 319


>sp|AATB_METB6|A-TYPE ATP synthase subunit B|Methanoregula boonei (strain DSM 21154

Query: 2 KAHPNMEAG 10
K HP ++AG
Sbjct: 450 KYHPKLKAG 458


>sp|SYDND_HALVO|ASPARTATE--TRNA(ASP/ASN) ligase|Haloferax volcanii (Halobacterium volcanii)

Query: 4 HPNME 8
HPNME
Sbjct: 352 HPNME 356


>sp|MFNA_METS3|PROBABLE L-tyrosine/L-aspartate decarboxylase|Methanobrevibacter smithii

Query: 4 HPNMEA 9
HP+MEA
Sbjct: 333 HPDMEA 338


>sp|ASD_HALSA|PUTATIVE archaetidylserine decarboxylase proenzyme|Halobacterium salinarum

Query: 1 KKAHPNMEAG 10
++ HP +EAG
Sbjct: 139 RRIHPYVEAG 148


>sp|FRHA_METBF|COENZYME F420 hydrogenase subunit alpha|Methanosarcina barkeri (strain

Query: 2 KAHPNMEA 9
KA+P MEA
Sbjct: 290 KANPQMEA 297


>sp|ILVC_METBF|KETOL-ACID reductoisomerase (NADP(+))|Methanosarcina barkeri (strain Fusaro /

Query: 5 PNMEAG 10
PN+EAG
Sbjct: 96 PNLEAG 101


>sp|HISX_METTH|HISTIDINOL dehydrogenase|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 KKAHPNMEAG 10
++AH N+E G
Sbjct: 69 EEAHKNLEPG 78


>sp|DAPAT_METJA|LL-DIAMINOPIMELATE aminotransferase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KAHPNME 8
K HP+ME
Sbjct: 39 KRHPDME 45




19|Sequence|91|100|NMEAGPPESG

>sp|SYK_METTH|LYSINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 MEAGPPES 9
+E GPPES
Sbjct: 307 LEIGPPES 314


>sp|RPO1N_METTH|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanothermobacter thermautotrophicus

Query: 1 NMEAGPPE 8
NMEAG P+
Sbjct: 248 NMEAGAPQ 255


>sp|RPO1N_METTW|DNA-DIRECTED RNA polymerase subunit Rpo1N|Methanothermobacter thermautotrophicus

Query: 1 NMEAGPPE 8
NMEAG P+
Sbjct: 248 NMEAGAPQ 255


>sp|GPMA_METMA|2,3-BISPHOSPHOGLYCERATE-DEPENDENT phosphoglycerate mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 NMEAGPPE 8
N E GPPE
Sbjct: 146 NFEPGPPE 153


>sp|SYFA_METS5|PHENYLALANINE--TRNA ligase alpha subunit|Metallosphaera sedula (strain ATCC 51363

Query: 1 NMEAGPP 7
N+EA PP
Sbjct: 202 NVEANPP 208


>sp|NIFH_METMJ|NITROGENASE iron protein|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 MEAGPPESG 10
+EAG PE G
Sbjct: 84 VEAGGPEPG 92


>sp|PMDHL_METTH|PHOSPHOMEVALONATE dehydratase large subunit|Methanothermobacter thermautotrophicus

Query: 2 MEAGPPESG 10
MEA P E+G
Sbjct: 259 MEASPDEAG 267


>sp|RRP42_THEVO|EXOSOME complex component Rrp42|Thermoplasma volcanium (strain ATCC 51530

Query: 1 NMEAGPP 7
+ EAGPP
Sbjct: 95 SFEAGPP 101




20|Sequence|96|105|PPESGESTDA

>sp|KAD_PYRFU|ADENYLATE kinase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 PPESGESTDA 10
PP SG+ST A
Sbjct: 8 PPGSGKSTQA 17


>sp|KAD_PYRHO|ADENYLATE kinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 PPESGESTDA 10
PP SG+ST A
Sbjct: 8 PPGSGKSTQA 17


>sp|KAD_PYRAB|ADENYLATE kinase|Pyrococcus abyssi (strain GE5 /

Query: 1 PPESGESTDA 10
PP SG+ST A
Sbjct: 8 PPGSGKSTQA 17


>sp|KCY_SULTO|CYTIDYLATE kinase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 PPESGESTDA 10
PP SG+ST A
Sbjct: 8 PPGSGKSTVA 17


>sp|XERA_SACS2|TYROSINE recombinase XerA|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 PPESGESTDA 10
PPESG+ +A
Sbjct: 8 PPESGDLYNA 17


>sp|KCY_DESA1|CYTIDYLATE kinase|Desulfurococcus amylolyticus (strain DSM 18924

Query: 1 PPESGESTDA 10
PP SG++T A
Sbjct: 9 PPGSGKTTQA 18


>sp|KCY_AERPE|CYTIDYLATE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 1 PPESGESTDA 10
PP SG+ST A
Sbjct: 5 PPGSGKSTYA 14


>sp|KAD_THESM|ADENYLATE kinase|Thermococcus sibiricus (strain DSM 12597

Query: 1 PPESGEST 8
PP SG+ST
Sbjct: 8 PPGSGKST 15


>sp|CDC6H_HALMA|ORC1-TYPE DNA replication protein 8|Haloarcula marismortui (strain ATCC 43049

Query: 2 PESGESTDA 10
PESG STD+
Sbjct: 123 PESGYSTDS 131


>sp|KAD_THEON|ADENYLATE kinase|Thermococcus onnurineus (strain NA1)

Query: 1 PPESGEST 8
PP SG+ST
Sbjct: 8 PPGSGKST 15


>sp|KCY_IGNH4|CYTIDYLATE kinase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 PPESGESTDA 10
PP SG+ST A
Sbjct: 9 PPGSGKSTVA 18


>sp|KCY_HALLT|CYTIDYLATE kinase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 PPESGESTDA 10
PP SG+ST+A
Sbjct: 8 PPGSGKSTNA 17


>sp|KAD_THEGJ|ADENYLATE kinase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 PPESGEST 8
PP SG+ST
Sbjct: 8 PPGSGKST 15


>sp|DHEB_HALSI|GLUTAMATE dehydrogenase B|Halobacterium salinarum (Halobacterium halobium)

Query: 1 PPESGESTDA 10
PPES STD+
Sbjct: 6 PPESAPSTDS 15


>sp|DHEB_HALSA|GLUTAMATE dehydrogenase B|Halobacterium salinarum (strain ATCC 700922

Query: 1 PPESGESTDA 10
PPES STD+
Sbjct: 6 PPESAPSTDS 15


>sp|NTPTH_AERPE|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Aeropyrum pernix (strain ATCC 700893

Query: 1 PPESGEST 8
PP SG+ST
Sbjct: 25 PPGSGKST 32


>sp|Y939_SULTO|KELCH domain-containing protein STK_09390|Sulfurisphaera tokodaii (strain

Query: 4 SGESTDA 10
SGE+TDA
Sbjct: 665 SGENTDA 671


>sp|Y1533_METJA|UNCHARACTERIZED KH and PIN-domain containing|Methanocaldococcus jannaschii (strain

Query: 1 PPESGEST 8
PP SG+ST
Sbjct: 292 PPGSGKST 299


>sp|KAD_THEKO|ADENYLATE kinase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 PPESGEST 8
PP SG+ST
Sbjct: 8 PPGSGKST 15


>sp|DNAG_METAR|DNA primase DnaG|Methanocella arvoryzae (strain DSM 22066

Query: 2 PESGESTDA 10
PES E TDA
Sbjct: 135 PESQEITDA 143


>sp|GATA_HALSA|GLUTAMYL-TRNA(GLN) amidotransferase subunit A|Halobacterium salinarum (strain ATCC

Query: 1 PPESGESTD 9
PP+ GES D
Sbjct: 357 PPKLGESLD 365


>sp|ENO_METMA|ENOLASE mazei (strain ATCC BAA-159

Query: 2 PESGESTDA 10
P+ GEST+A
Sbjct: 222 PKMGESTEA 230


>sp|KAD_METTP|ADENYLATE kinase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 PPESGESTDA 10
PP SG+ T A
Sbjct: 8 PPGSGKGTQA 17


>sp|IDH_ARCFU|ISOCITRATE dehydrogenase [NADP]|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 PPESGE 6
PPE+GE
Sbjct: 8 PPENGE 13


>sp|TRPA_HALMA|TRYPTOPHAN synthase alpha chain|Haloarcula marismortui (strain ATCC 43049

Query: 3 ESGESTDA 10
E+G+STDA
Sbjct: 257 ENGDSTDA 264




21|Sequence|101|110|ESTDALKLCP

>sp|SYL1_METS5|LEUCINE--TRNA ligase 1|Metallosphaera sedula (strain ATCC 51363

Query: 2 STDALKLCP 10
+TDA+ CP
Sbjct: 174 ATDAVGYCP 182




22|Sequence|106|115|LKLCPHEEFL

>sp|RPO1N_SULAC|DNA-DIRECTED RNA polymerase subunit Rpo1N|Sulfolobus acidocaldarius (strain ATCC

Query: 2 KLCPHEEFL 10
++CPH+ F+
Sbjct: 578 EICPHDSFI 586


>sp|SAT_PYRAB|SULFATE adenylyltransferase|Pyrococcus abyssi (strain GE5 /

Query: 2 KLCPHEE 8
K+CPH+E
Sbjct: 330 KICPHDE 336


>sp|AATA_METJA|A-TYPE ATP synthase subunit A|Methanocaldococcus jannaschii (strain ATCC

Query: 1 LKLCPHEEFL 10
+K PH+EF+
Sbjct: 559 MKYIPHDEFI 568


>sp|SAT_HYPBU|SULFATE adenylyltransferase|Hyperthermus butylicus (strain DSM 5456

Query: 2 KLCPHEE 8
K+CPH E
Sbjct: 333 KICPHPE 339


>sp|SYE_THEAC|GLUTAMATE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 4 CPHEEF 9
CP EEF
Sbjct: 192 CPREEF 197


>sp|AATA_META3|A-TYPE ATP synthase subunit A|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 LKLCPHEEFL 10
+K P EEFL
Sbjct: 558 MKYTPEEEFL 567


>sp|SAT_IGNH4|SULFATE adenylyltransferase|Ignicoccus hospitalis (strain KIN4/I /

Query: 2 KLCPHEE 8
K+CPH E
Sbjct: 333 KICPHPE 339


>sp|SYE_PYRAE|GLUTAMATE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 KLCPHEE 8
K CPH E
Sbjct: 216 KACPHRE 222


>sp|SAT_STAMF|SULFATE adenylyltransferase|Staphylothermus marinus (strain ATCC 43588

Query: 2 KLCPHEE 8
K+CPH E
Sbjct: 333 KICPHGE 339


>sp|Y711_METJA|UNCHARACTERIZED protein MJ0711|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 KLCPHEEFL 10
++C +EEFL
Sbjct: 33 RICSYEEFL 41


>sp|DPO4_METMJ|DNA polymerase IV|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 LCPHEEFL 10
LCPH +L
Sbjct: 72 LCPHGVYL 79


>sp|SYE_METAR|GLUTAMATE--TRNA ligase|Methanocella arvoryzae (strain DSM 22066

Query: 2 KLCPHEE 8
K CPH E
Sbjct: 217 KPCPHRE 223


>sp|FLPA_METKA|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Methanopyrus kandleri (strain

Query: 1 LKLCPHEEF 9
+++ PHEEF
Sbjct: 4 IEIEPHEEF 12


>sp|RHAD_THEAC|L-RHAMNOSE 1-dehydrogenase (NADP(+))|Thermoplasma acidophilum (strain ATCC

Query: 3 LCPHEEFL 10
+CP E+F
Sbjct: 94 ICPFEDFF 101


>sp|SYE_STAMF|GLUTAMATE--TRNA ligase|Staphylothermus marinus (strain ATCC 43588

Query: 2 KLCPHEEF 9
K CPH E
Sbjct: 198 KPCPHREL 205


>sp|TBP_THECE|TATA-BOX-BINDING protein|Thermococcus celer

Query: 1 LKLCPHEEF 9
+++CPH ++
Sbjct: 27 IEMCPHSKY 35


>sp|SAT_CENSY|SULFATE adenylyltransferase|Cenarchaeum symbiosum (strain A)

Query: 2 KLCPHEE 8
K CPH E
Sbjct: 330 KACPHGE 336


>sp|AATA_METVS|A-TYPE ATP synthase subunit A|Methanococcus vannielii (strain ATCC 35089

Query: 1 LKLCPHEEFL 10
+K P EEF+
Sbjct: 557 MKYMPEEEFI 566


>sp|PUS10_METTM|TRNA pseudouridine synthase Pus10|Methanothermobacter marburgensis

Query: 2 KLCPH 6
K+CPH
Sbjct: 17 KICPH 21


>sp|SAT_AERPE|SULFATE adenylyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 2 KLCPH 6
K+CPH
Sbjct: 335 KVCPH 339


>sp|Y142_AERPE|UNCHARACTERIZED HTH-type transcriptional regulator APE_0142|Aeropyrum pernix

Query: 2 KLCPHEE 8
K CPH++
Sbjct: 138 KYCPHKK 144


>sp|SYE_PYRIL|GLUTAMATE--TRNA ligase|Pyrobaculum islandicum (strain DSM 4184

Query: 2 KLCPHEE 8
+ CPH E
Sbjct: 216 RACPHRE 222


>sp|ASSTI_METAC|L-ASPARTATE semialdehyde sulfurtransferase iron-sulfur subunit|Methanosarcina

Query: 1 LKLCPH 6
+K+CPH
Sbjct: 118 IKMCPH 123


>sp|SAT_THEON|SULFATE adenylyltransferase|Thermococcus onnurineus (strain NA1)

Query: 2 KLCPH-EEF 9
K+CPH +EF
Sbjct: 330 KICPHPKEF 338


>sp|SAT_NITMS|SULFATE adenylyltransferase|Nitrosopumilus maritimus (strain SCM1)

Query: 2 KLCPHE 7
K CPH+
Sbjct: 331 KACPHD 336


>sp|TBP_THESM|TATA-BOX-BINDING protein|Thermococcus sibiricus (strain DSM 12597

Query: 1 LKLCPHEEF 9
+++CPH ++
Sbjct: 27 IEICPHSKY 35


>sp|SYL_ARCFU|LEUCINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LKLCPHEE 8
++ CPH++
Sbjct: 176 VRYCPHDQ 183


>sp|SYE_PYRAR|GLUTAMATE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 KLCPHEE 8
K CPH +
Sbjct: 216 KACPHRD 222


>sp|SYE_METMA|GLUTAMATE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 KLCPHEE 8
K CPH +
Sbjct: 215 KACPHRD 221




23|Sequence|111|120|HEEFLRLCKE

>sp|SYV_THEAC|VALINE--TRNA ligase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 EEFLRLCKE 10
EEF+RLCKE
Sbjct: 102 EEFIRLCKE 110


>sp|SYV_METTP|VALINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 EEFLRLCKE 10
EEF RLC+E
Sbjct: 106 EEFRRLCEE 114


>sp|CARB_METTP|CARBAMOYL phosphate synthase large chain|Methanothrix thermoacetophila

Query: 1 HEEFLRLCK 9
HEE +R+C+
Sbjct: 185 HEELMRICE 193


>sp|SYV_PYRAE|VALINE--TRNA ligase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 EEFLRLCKE 10
E+F+++CKE
Sbjct: 108 EKFIKMCKE 116


>sp|Y612_METJA|PROBABLE arogenate/prephenate dehydrogenase|Methanocaldococcus jannaschii

Query: 1 HEEFLRLCKE 10
HE F+ CKE
Sbjct: 244 HETFINQCKE 253


>sp|HBCAL_NITMS|4-HYDROXYBUTYRATE--COA ligase [ADP-forming]|Nitrosopumilus maritimus (strain SCM1)

Query: 2 EEFLRLCK 9
+EFL++CK
Sbjct: 221 QEFLKVCK 228


>sp|CARA_METKA|CARBAMOYL phosphate synthase small chain|Methanopyrus kandleri (strain AV19 /

Query: 2 EEFLRLCKE 10
+EFL +C+E
Sbjct: 352 DEFLAMCRE 360


>sp|TRI_THEAC|TRICORN protease|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 HEEFLRLCKE 10
HEEFL++ E
Sbjct: 683 HEEFLQMYDE 692


>sp|SYV_METTH|VALINE--TRNA ligase|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 EEFLRLCKE 10
EEF RLC E
Sbjct: 108 EEFRRLCVE 116


>sp|SYI_METTM|ISOLEUCINE--TRNA ligase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 2 EEFLRLCKE 10
EEF+R C+E
Sbjct: 116 EEFVRKCRE 124


>sp|RAD50_SACS2|DNA double-strand break repair Rad50|Saccharolobus solfataricus (strain

Query: 1 HEEFLRLCK 9
+EEF+RL K
Sbjct: 532 YEEFMRLSK 540


>sp|TRPA_METJA|TRYPTOPHAN synthase alpha chain|Methanocaldococcus jannaschii (strain ATCC

Query: 2 EEFLRLCKE 10
EEF++ CKE
Sbjct: 112 EEFVKKCKE 120


>sp|HEM1_METTM|GLUTAMYL-TRNA reductase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 3 EFLRLCKE 10
EFLR+C E
Sbjct: 384 EFLRMCSE 391


>sp|Y158_METJA|UPF0425 pyridoxal phosphate-dependent protein MJ0158|Methanocaldococcus

Query: 1 HEEFLRLCK 9
+EEFLRL K
Sbjct: 5 YEEFLRLEK 13


>sp|PDXT_METS5|PYRIDOXAL 5'-phosphate synthase subunit PdxT|Metallosphaera sedula (strain

Query: 1 HEEFLRLCK 9
HE FLR+ K
Sbjct: 189 HEYFLRMVK 197


>sp|SYV_THEVO|VALINE--TRNA ligase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 EEFLRLCKE 10
E F+ LC+E
Sbjct: 102 EHFINLCRE 110


>sp|LIVF_ARCFU|PROBABLE branched-chain amino acid transport|Archaeoglobus fulgidus (strain

Query: 1 HEEFLRLC 8
HE+F +LC
Sbjct: 224 HEKFEKLC 231


>sp|MVK_METJA|MEVALONATE kinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EEFLRLCK 9
EEFL+ CK
Sbjct: 180 EEFLKNCK 187


>sp|MALE_PYRFU|MALTOTRIOSE-BINDING protein|Pyrococcus furiosus (strain ATCC 43587

Query: 2 EEFLRLCKE 10
EE++ LC E
Sbjct: 80 EEYMALCPE 88


>sp|Y3226_SACS2|UNCHARACTERIZED aldolase SSO3226|Saccharolobus solfataricus (strain ATCC 35092

Query: 2 EEFLRLCKE 10
EEFLR+ ++
Sbjct: 218 EEFLRMLRD 226


>sp|THIL_METJA|THIAMINE-MONOPHOSPHATE kinase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 HEEFLRLCKE 10
++EF RLC++
Sbjct: 179 YKEFERLCQK 188


>sp|Y1169_SACI6|UPF0200 protein M164_1169|Saccharolobus islandicus (strain M.16.4 /

Query: 1 HEEFLRLCKE 10
+EEF R C+E
Sbjct: 170 YEEFKRRCEE 179


>sp|Y1675_SACI1|UPF0200 protein YN1551_1675|Saccharolobus islandicus (strain Y.N.15.51 /

Query: 1 HEEFLRLCKE 10
+EEF R C+E
Sbjct: 170 YEEFKRRCEE 179


>sp|Y1277_SACI2|UPF0200 protein LS215_1277|Saccharolobus islandicus (strain L.S.2.15 /

Query: 1 HEEFLRLCKE 10
+EEF R C+E
Sbjct: 170 YEEFKRRCEE 179


>sp|Y1244_SACI3|UPF0200 protein M1627_1244|Saccharolobus islandicus (strain M.16.27)

Query: 1 HEEFLRLCKE 10
+EEF R C+E
Sbjct: 170 YEEFKRRCEE 179


>sp|Y1180_SACI4|UPF0200 protein M1425_1180|Saccharolobus islandicus (strain M.14.25 /

Query: 1 HEEFLRLCKE 10
+EEF R C+E
Sbjct: 170 YEEFKRRCEE 179


>sp|Y1041_SACS2|UPF0200 protein SSO1041|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 HEEFLRLCKE 10
+EEF R C+E
Sbjct: 170 YEEFKRRCEE 179


>sp|Y1305_METJA|PUTATIVE protein adenylyltransferase MJ1305|Methanocaldococcus jannaschii

Query: 2 EEFLRLCKE 10
+EFL+ CK+
Sbjct: 11 DEFLQKCKQ 19


>sp|ASSY_HALMA|ARGININOSUCCINATE synthase|Haloarcula marismortui (strain ATCC 43049

Query: 2 EEFLRLCKE 10
EEF LC E
Sbjct: 69 EEFADLCME 77


>sp|Y1176_SACI7|UPF0200 protein YG5714_1176|Saccharolobus islandicus (strain Y.G.57.14 /

Query: 1 HEEFLRLCKE 10
+EEF R C+E
Sbjct: 170 YEEFKRRCEE 179


>sp|SYV_AERPE|VALINE--TRNA ligase|Aeropyrum pernix (strain ATCC 700893

Query: 2 EEFLRLCKE 10
E FL LC E
Sbjct: 119 ERFLALCSE 127


>sp|MTNA_METJA|PUTATIVE methylthioribose-1-phosphate isomerase|Methanocaldococcus

Query: 1 HEEFLRLCKE 10
HEE + CK+
Sbjct: 115 HEEDIETCKK 124


>sp|SYV_ARCFU|VALINE--TRNA ligase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 EEFLRLCKE 10
+EF RLC E
Sbjct: 105 DEFRRLCVE 113


>sp|Y3544_METJA|UNCHARACTERIZED protein MJECL44|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 EEFLRLCK 9
EEF +CK
Sbjct: 233 EEFYEICK 240


>sp|SYI_METMP|ISOLEUCINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 2 EEFLRLCKE 10
+EF+ CKE
Sbjct: 113 QEFINKCKE 121


>sp|RADB_THEVO|DNA repair and recombination protein|Thermoplasma volcanium (strain

Query: 2 EEFLRLCK 9
E FL +CK
Sbjct: 74 ERFLSICK 81


>sp|SYV_METMP|VALINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 3 EFLRLCKE 10
EF RLC E
Sbjct: 106 EFRRLCVE 113


>sp|SYI_METBF|ISOLEUCINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 2 EEFLRLCKE 10
E F+ CKE
Sbjct: 114 ENFIEKCKE 122


>sp|SYV_PYRAB|VALINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 2 EEFLRLCKE 10
EEFL+ C E
Sbjct: 103 EEFLKKCVE 111


>sp|SYI_SACI4|ISOLEUCINE--TRNA ligase|Saccharolobus islandicus (strain M.14.25 /

Query: 2 EEFLRLCKE 10
E F+ CKE
Sbjct: 116 ENFINKCKE 124


>sp|SYI_SACI3|ISOLEUCINE--TRNA ligase|Saccharolobus islandicus (strain M.16.27) (Sulfolobus

Query: 2 EEFLRLCKE 10
E F+ CKE
Sbjct: 116 ENFINKCKE 124


>sp|SYI_METAC|ISOLEUCINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 EEFLRLCKE 10
E F+ CKE
Sbjct: 114 ENFIEKCKE 122


>sp|SYV_PYRHO|VALINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 2 EEFLRLCKE 10
EEFL+ C E
Sbjct: 103 EEFLKKCVE 111


>sp|SYI_METMA|ISOLEUCINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 EEFLRLCKE 10
E F+ CKE
Sbjct: 114 ENFIEKCKE 122


>sp|RAD50_SULTO|DNA double-strand break repair Rad50|Sulfurisphaera tokodaii (strain

Query: 1 HEEFLRLCKE 10
HE+++RL +E
Sbjct: 536 HEKYIRLKEE 545




24|Sequence|116|125|RLCKERAEEI

>sp|PYRE_PYRFU|OROTATE phosphoribosyltransferase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 RLCKERAEE 9
RL KE+AEE
Sbjct: 49 RLIKEKAEE 57


>sp|AROC_IGNH4|CHORISMATE synthase|Ignicoccus hospitalis (strain KIN4/I /

Query: 3 CKERAEEI 10
C+E+AEE+
Sbjct: 187 CEEKAEEV 194


>sp|RNZ_NATPD|RIBONUCLEASE Z|Natronomonas pharaonis (strain ATCC 35678

Query: 1 RLCKERAEEI 10
R +ERAEE+
Sbjct: 156 RFDRERAEEL 165


>sp|YPV8_METTF|UNCHARACTERIZED protein ORF8|Methanothermobacter thermautotrophicus

Query: 4 KERAEEI 10
KERAE+I
Sbjct: 326 KERAEDI 332


>sp|FAEHP_METTP|BIFUNCTIONAL enzyme Fae/Hps|Methanothrix thermoacetophila (strain DSM 6194

Query: 4 KERAEEI 10
KERAEE+
Sbjct: 101 KERAEEL 107


>sp|MTSB_METMA|METHYLATED-THIOL--CORRINOID protein MtsB|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 RLCKERAEEI 10
+LC+ER EI
Sbjct: 133 KLCQERIGEI 142


>sp|PYRE_PYRHO|OROTATE phosphoribosyltransferase|Pyrococcus horikoshii (strain ATCC

Query: 1 RLCKERAEEI 10
+L KE+AEE+
Sbjct: 51 KLIKEKAEEL 60


>sp|SERA_ARCFU|D-3-PHOSPHOGLYCERATE dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 KERAEEI 10
KERAE+I
Sbjct: 174 KERAEQI 180


>sp|KAE1_IGNH4|TRNA N6-adenosine threonylcarbamoyltransferase|Ignicoccus hospitalis

Query: 2 LCKERAEE 9
LC E AEE
Sbjct: 183 LCSEGAEE 190


>sp|TPIS_THEAC|TRIOSEPHOSPHATE isomerase|Thermoplasma acidophilum (strain ATCC 25905

Query: 2 LCKERAEE 9
LC E AEE
Sbjct: 115 LCVENAEE 122


>sp|RAD50_PYRAB|DNA double-strand break repair Rad50|Pyrococcus abyssi (strain GE5 /

Query: 4 KERAEEI 10
KERAEEI
Sbjct: 341 KERAEEI 347




25|Sequence|121|130|RAEEIYPIKE

>sp|RS3A_STAMF|SMALL ribosomal subunit protein eS1|Staphylothermus marinus (strain ATCC

Query: 1 RAEEIYPIKE 10
RA +IYPI++
Sbjct: 173 RARKIYPIRK 182


>sp|SYFA_METM7|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus maripaludis (strain C7 /

Query: 2 AEEIYPIK 9
EEIYP+K
Sbjct: 225 TEEIYPVK 232


>sp|RS3A_IGNH4|SMALL ribosomal subunit protein eS1|Ignicoccus hospitalis (strain KIN4/I

Query: 1 RAEEIYPIK 9
RA +IYPI+
Sbjct: 175 RARKIYPIR 183


>sp|HDRA1_METAC|FERREDOXIN:COB-COM heterodisulfide reductase subunit A|Methanosarcina acetivorans

Query: 1 RAEEIYPI 8
RAE IYP+
Sbjct: 747 RAEVIYPL 754


>sp|MRE11_SULAC|DNA double-strand break repair protein|Sulfolobus acidocaldarius

Query: 1 RAEEIYP 7
R EEIYP
Sbjct: 90 RKEEIYP 96


>sp|RS3A_THEKO|SMALL ribosomal subunit protein eS1|Thermococcus kodakarensis (strain

Query: 2 AEEIYPIK 9
A +IYPIK
Sbjct: 178 ARKIYPIK 185


>sp|RS3A_THEGJ|SMALL ribosomal subunit protein eS1|Thermococcus gammatolerans (strain

Query: 2 AEEIYPIK 9
A +IYPIK
Sbjct: 178 ARKIYPIK 185


>sp|RRP41_METMA|EXOSOME complex component Rrp41|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 RAEEIYPIK 9
RA+EI P+K
Sbjct: 22 RADEIRPMK 30


>sp|RS3A_THEON|SMALL ribosomal subunit protein eS1|Thermococcus onnurineus (strain NA1)

Query: 2 AEEIYPIK 9
A +IYPIK
Sbjct: 178 ARKIYPIK 185


>sp|ACDA1_METMA|ACETYL-COA decarbonylase/synthase complex subunit alpha|Methanosarcina mazei

Query: 2 AEEIYPIKE 10
A+E++PI+E
Sbjct: 389 AQEMHPIRE 397


>sp|RS3A_PYRAB|SMALL ribosomal subunit protein eS1|Pyrococcus abyssi (strain GE5 /

Query: 2 AEEIYPIKE 10
A++IYP+K+
Sbjct: 175 AKKIYPLKK 183


>sp|RS3A_THESM|SMALL ribosomal subunit protein eS1|Thermococcus sibiricus (strain DSM

Query: 2 AEEIYPIK 9
A++IYP+K
Sbjct: 178 AKKIYPLK 185


>sp|RS3A_METTH|SMALL ribosomal subunit protein eS1|Methanothermobacter

Query: 1 RAEEIYPIK 9
+A++IYP+K
Sbjct: 173 QAKKIYPLK 181


>sp|RS3A_ARCFU|SMALL ribosomal subunit protein eS1|Archaeoglobus fulgidus (strain ATCC

Query: 2 AEEIYPIK 9
A++IYPI+
Sbjct: 177 AKKIYPIR 184


>sp|MTAC_METBF|METHANOL--CORRINOID protein|Methanosarcina barkeri (strain Fusaro /

Query: 2 AEEIYPIKE 10
AEE+YP E
Sbjct: 30 AEELYPKDE 38


>sp|SYFA_METVS|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus vannielii (strain ATCC 35089

Query: 2 AEEIYPIK 9
EEIYP K
Sbjct: 225 TEEIYPAK 232


>sp|DADD_METKA|5'-DEOXYADENOSINE deaminase|Methanopyrus kandleri (strain AV19 /

Query: 3 EEIYPIKE 10
EEI+P++E
Sbjct: 88 EEIWPLEE 95


>sp|Y1681_METJA|UNCHARACTERIZED protein MJ1681|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RAEEIY 6
RAEEIY
Sbjct: 56 RAEEIY 61




26|Sequence|126|135|YPIKERNNRT

>sp|Y543_METHJ|UPF0316 protein Mhun_0543|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 YPIKERNN 8
YPI+++NN
Sbjct: 177 YPIEDKNN 184


>sp|PRNK_THEKO|POLYRIBONUCLEOTIDE 5'-hydroxyl-kinase TK1956|Thermococcus kodakarensis (strain ATCC

Query: 1 YPIKERNN 8
YP++ER N
Sbjct: 190 YPLEERRN 197


>sp|APGM_METMA|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 YPIKERNNRT 10
YPI++ NRT
Sbjct: 14 YPIEKLGNRT 23


>sp|APGM_METAC|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanosarcina acetivorans (strain ATCC

Query: 1 YPIKERNNRT 10
YPI+E +RT
Sbjct: 14 YPIEELGSRT 23


>sp|FEN_METAR|FLAP endonuclease 1|Methanocella arvoryzae (strain DSM 22066

Query: 3 IKERNNRT 10
+KE NNRT
Sbjct: 16 LKELNNRT 23




27|Sequence|131|140|RNNRTRLALI

>sp|PHEA_METJA|PREPHENATE dehydratase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RNNRTRLALI 10
+NN+TR LI
Sbjct: 168 KNNKTRFILI 177




28|Sequence|136|145|RLALIICNTE

>sp|NFI_PYRAB|ENDONUCLEASE V|Pyrococcus abyssi (strain GE5 /

Query: 1 RLALIICN 8
R+AL+IC+
Sbjct: 40 RVALVICS 47




29|Sequence|141|150|ICNTEFDHLP

>sp|KPRS_METKA|RIBOSE-PHOSPHATE pyrophosphokinase|Methanopyrus kandleri (strain AV19 /

Query: 1 ICNTEFDHL 9
IC E+DHL
Sbjct: 178 ICGVEYDHL 186


>sp|MALA_HALJT|ALPHA-AMYLASE MalA|Haloarcula japonica (strain ATCC 49778

Query: 1 ICNTEFDHLP 10
I N FDHLP
Sbjct: 380 IANFNFDHLP 389


>sp|MPTA_HALSA|GTP cyclohydrolase MptA|Halobacterium salinarum (strain ATCC 700922

Query: 5 EFDHLP 10
EFDHLP
Sbjct: 267 EFDHLP 272


>sp|MPTA_HALS3|GTP cyclohydrolase MptA|Halobacterium salinarum (strain ATCC 29341

Query: 5 EFDHLP 10
EFDHLP
Sbjct: 267 EFDHLP 272


>sp|GGR2_METST|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 2|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 CNTEFDHL 9
CNTEF ++
Sbjct: 170 CNTEFKYM 177


>sp|DP2L_HALWD|DNA polymerase II large subunit|Haloquadratum walsbyi (strain DSM 16790

Query: 1 ICNTEFDHL 9
I TEFDHL
Sbjct: 521 ISVTEFDHL 529


>sp|GATD_THEPD|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Thermofilum pendens (strain DSM 2475

Query: 4 TEFDHLP 10
+EFDH P
Sbjct: 441 SEFDHYP 447


>sp|ATGT_METAC|TRNA-GUANINE(15) transglycosylase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 ICNTEFDH 8
IC EF+H
Sbjct: 462 ICEKEFEH 469


>sp|MVK_PYRAB|MEVALONATE kinase|Pyrococcus abyssi (strain GE5 /

Query: 5 EFDHLP 10
EF+HLP
Sbjct: 178 EFEHLP 183


>sp|SYH_METMJ|HISTIDINE--TRNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 ICNTEFDHL 9
+C +F+HL
Sbjct: 38 VCTPDFEHL 46


>sp|HIS7_METS3|IMIDAZOLEGLYCEROL-PHOSPHATE dehydratase|Methanobrevibacter smithii (strain ATCC 35061

Query: 2 CNTEFD 7
CN EFD
Sbjct: 116 CNMEFD 121


>sp|Y093_METJA|UNCHARACTERIZED protein MJ0093|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ICNTEFD 7
ICN +FD
Sbjct: 33 ICNVKFD 39


>sp|ATGT_METMA|TRNA-GUANINE(15) transglycosylase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 ICNTEFDH 8
IC EF H
Sbjct: 462 ICEKEFQH 469


>sp|COFH_HALMA|5-AMINO-6-(D-RIBITYLAMINO)URACIL--L-TYROSINE 4-hydroxyphenyl transferase|Haloarcula marismortui (strain ATCC

Query: 3 NTEFDHLP 10
+TEF+H P
Sbjct: 14 STEFEHRP 21


>sp|Y1128_METJA|UNCHARACTERIZED protein MJ1128|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 CNTEFDHL 9
CN ++HL
Sbjct: 275 CNKHYEHL 282


>sp|SYDND_HALSA|ASPARTATE--TRNA(ASP/ASN) ligase|Halobacterium salinarum (strain ATCC 700922

Query: 1 ICNTEFDHLP 10
I E+DH+P
Sbjct: 290 ILADEYDHVP 299


>sp|ATGT_METBF|TRNA-GUANINE(15) transglycosylase|Methanosarcina barkeri (strain Fusaro /

Query: 1 ICNTEFDH 8
IC EF H
Sbjct: 462 ICEEEFKH 469


>sp|CAS10_METJA|CRISPR system single-strand-specific deoxyribonuclease

Query: 1 ICNTEFD 7
IC EFD
Sbjct: 430 ICRNEFD 436


>sp|TBP3_METMA|TATA-BOX-BINDING protein 3|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 ICNTEFDHL 9
I TEFD+L
Sbjct: 173 IVKTEFDNL 181


>sp|HMDX_METJA|H(2)-FORMING methylenetetrahydromethanopterin dehydrogenase-related protein

Query: 1 ICNTEFDHLP 10
I NT +H+P
Sbjct: 98 IANTIIEHVP 107




30|Sequence|146|155|FDHLPPRNGA

>sp|Y008_METJA|UNCHARACTERIZED protein MJ0008|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 HLPPRN 8
HLPP+N
Sbjct: 171 HLPPKN 176


>sp|COXX_HALSA|PROTOHEME IX farnesyltransferase|Halobacterium salinarum (strain ATCC 700922

Query: 2 DHLPPRNG 9
D +PPRN
Sbjct: 237 DRIPPRNA 244


>sp|COXX_HALS3|PROTOHEME IX farnesyltransferase|Halobacterium salinarum (strain ATCC 29341

Query: 2 DHLPPRNG 9
D +PPRN
Sbjct: 254 DRIPPRNA 261


>sp|RF1_HALLT|PEPTIDE chain release factor subunit|Halorubrum lacusprofundi (strain

Query: 1 FDHLPPRNG 9
+D PP NG
Sbjct: 85 YDTFPPENG 93


>sp|PYRI_IGNH4|ASPARTATE carbamoyltransferase regulatory chain|Ignicoccus hospitalis

Query: 2 DHLPP 6
DHLPP
Sbjct: 16 DHLPP 20


>sp|HACA_METAC|PROBABLE methanogen homoaconitase large subunit|Methanosarcina acetivorans

Query: 1 FDHLPPRN 8
FDH+ P N
Sbjct: 73 FDHIAPAN 80


>sp|AATI_PYRAB|A-TYPE ATP synthase subunit I|Pyrococcus abyssi (strain GE5 /

Query: 3 HLPPRNGA 10
+LPPR G
Sbjct: 71 YLPPRKGG 78


>sp|HACA_METMA|PROBABLE methanogen homoaconitase large subunit|Methanosarcina mazei

Query: 1 FDHLPPRN 8
FDH+ P N
Sbjct: 40 FDHIAPAN 47


>sp|CDC6C_HALMA|ORC1-TYPE DNA replication protein 3|Haloarcula marismortui (strain ATCC 43049

Query: 1 FDHLPPRNG 9
FD+ PP +G
Sbjct: 110 FDYEPPSSG 118


>sp|RF1_HALSA|PEPTIDE chain release factor subunit|Halobacterium salinarum (strain ATCC

Query: 1 FDHLPPRNG 9
+D PP NG
Sbjct: 85 YDTFPPDNG 93


>sp|RF1_HALS3|PEPTIDE chain release factor subunit|Halobacterium salinarum (strain ATCC

Query: 1 FDHLPPRNG 9
+D PP NG
Sbjct: 85 YDTFPPDNG 93


>sp|PYRI_METKA|ASPARTATE carbamoyltransferase regulatory chain|Methanopyrus kandleri

Query: 1 FDHLPP 6
DHLPP
Sbjct: 16 LDHLPP 21


>sp|DPHB_PYRAE|DIPHTHINE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 4 LPPRNGA 10
+PPR GA
Sbjct: 172 MPPREGA 178


>sp|CDC66_HALSA|ORC1-TYPE DNA replication protein 6|Halobacterium salinarum (strain ATCC

Query: 1 FDHLPPRNG 9
FD+ PP +G
Sbjct: 110 FDYEPPSSG 118


>sp|TF2B1_HALSA|TRANSCRIPTION initiation factor IIB 1|Halobacterium salinarum (strain ATCC

Query: 2 DHLPPRNGA 10
DH P R GA
Sbjct: 49 DHAPERTGA 57


>sp|CDC62_METTH|ORC1-TYPE DNA replication protein 2|Methanothermobacter thermautotrophicus

Query: 1 FDHLPPRNG 9
F H PP G
Sbjct: 114 FGHQPPETG 122


>sp|RF1_HALWD|PEPTIDE chain release factor subunit|Haloquadratum walsbyi (strain DSM

Query: 1 FDHLPPRNG 9
+D PP NG
Sbjct: 85 YDTYPPDNG 93


>sp|Y977_METKA|UNCHARACTERIZED glycosyltransferase MK0977|Methanopyrus kandleri (strain AV19 /

Query: 2 DHLPPRNG 9
D LPPR+
Sbjct: 168 DELPPRDA 175


>sp|NADK_PYRHO|NAD kinase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 FDHLPP 6
++HLPP
Sbjct: 238 YEHLPP 243


>sp|EF2_PYRAE|ELONGATION factor 2|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 DHLPPRNGA 10
+H+PP N A
Sbjct: 258 EHIPPPNVA 266


>sp|PYRI_AERPE|ASPARTATE carbamoyltransferase regulatory chain|Aeropyrum pernix (strain

Query: 2 DHLPP 6
DH+PP
Sbjct: 18 DHIPP 22


>sp|EF2_PYRAR|ELONGATION factor 2|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 DHLPPRNGA 10
+H+PP N A
Sbjct: 258 EHVPPPNVA 266


>sp|EF2_PYRNV|ELONGATION factor 2|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 DHLPPRNGA 10
+H+PP N A
Sbjct: 258 EHVPPPNVA 266


>sp|EF2_PYRIL|ELONGATION factor 2|Pyrobaculum islandicum (strain DSM 4184

Query: 2 DHLPPRNGA 10
+H+PP N A
Sbjct: 258 EHVPPPNVA 266


>sp|EF2_PYRCJ|ELONGATION factor 2|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 DHLPPRNGA 10
+H+PP N A
Sbjct: 258 EHVPPPNVA 266


>sp|SAT_THEON|SULFATE adenylyltransferase|Thermococcus onnurineus (strain NA1)

Query: 1 FDHLPPRNGA 10
F+H P+N A
Sbjct: 238 FEHYYPKNAA 247




31|Sequence|151|160|PRNGADFDIT

>sp|GYRB_ARCFU|DNA gyrase subunit B|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 GADFDIT 10
G DFDIT
Sbjct: 480 GKDFDIT 486


>sp|RS15_METST|SMALL ribosomal subunit protein uS15|Methanosphaera stadtmanae (strain

Query: 2 RNGADFD 8
RNG DF+
Sbjct: 59 RNGTDFE 65


>sp|SPEE1_HYPBU|POLYAMINE aminopropyltransferase 1|Hyperthermus butylicus (strain DSM 5456

Query: 2 RNGADFDI 9
R G DFD+
Sbjct: 152 RRGEDFDV 159


>sp|PYRF_SULTO|OROTIDINE 5'-phosphate decarboxylase|Sulfurisphaera tokodaii (strain DSM

Query: 3 NGADFDI 9
NGAD++I
Sbjct: 173 NGADYEI 179


>sp|GSA_HALLT|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 PRNGAD 6
P+NGAD
Sbjct: 386 PKNGAD 391


>sp|CSG_HALSA|CELL surface glycoprotein|Halobacterium salinarum (strain ATCC 700922

Query: 2 RNGADFDIT 10
RN AD D+T
Sbjct: 148 RNNADNDVT 156


>sp|CSG_HALS3|CELL surface glycoprotein|Halobacterium salinarum (strain ATCC 29341

Query: 2 RNGADFDIT 10
RN AD D+T
Sbjct: 148 RNNADNDVT 156


>sp|THIE_METAC|THIAMINE-PHOSPHATE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 RNGADF 7
RNGAD+
Sbjct: 134 RNGADY 139




32|Sequence|156|165|DFDITGMKEL

>sp|TRUA_METAC|TRNA pseudouridine synthase A|Methanosarcina acetivorans (strain ATCC

Query: 1 DFDITGMKE 9
D+DI+ M+E
Sbjct: 119 DYDISKMRE 127


>sp|TRPD_AERPE|ANTHRANILATE phosphoribosyltransferase|Aeropyrum pernix (strain ATCC 700893

Query: 4 ITGMKEL 10
ITG+KEL
Sbjct: 264 ITGLKEL 270


>sp|MRE11_PYRFU|DNA double-strand break repair protein|Pyrococcus furiosus (strain ATCC

Query: 2 FDITGMKEL 10
FD+T +KEL
Sbjct: 312 FDLTEIKEL 320


>sp|PURL_PICTO|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Picrophilus torridus (strain ATCC 700027

Query: 4 ITGMKEL 10
ITGMK+L
Sbjct: 274 ITGMKDL 280


>sp|PRIS_METAC|DNA primase small subunit PriS|Methanosarcina acetivorans (strain ATCC

Query: 1 DFDITGMKEL 10
DFD+ KE+
Sbjct: 282 DFDVRNFKEI 291


>sp|KPRS1_ARCFU|RIBOSE-PHOSPHATE pyrophosphokinase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 DITGMKEL 10
D+TGM++L
Sbjct: 138 DLTGMEKL 145




33|Sequence|161|170|GMKELLEGLD

>sp|SYL_HALSA|LEUCINE--TRNA ligase|Halobacterium salinarum (strain ATCC 700922

Query: 4 ELLEGLD 10
ELL+GLD
Sbjct: 204 ELLDGLD 210


>sp|DNAG_METVS|DNA primase DnaG|Methanococcus vannielii (strain ATCC 35089

Query: 1 GMKELLEGL 9
G+KE+LEG+
Sbjct: 355 GVKEILEGI 363


>sp|RS3A_PYRIL|SMALL ribosomal subunit protein eS1|Pyrobaculum islandicum (strain DSM

Query: 2 MKELLEGL 9
+KE+LEGL
Sbjct: 167 LKEVLEGL 174


>sp|SYP_HALWD|PROLINE--TRNA ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 3 KELLEGLD 10
KE++EG D
Sbjct: 86 KEIVEGFD 93


>sp|IMDH_METJA|INOSINE-5'-MONOPHOSPHATE dehydrogenase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 KELLEGLD 10
KE+LEG D
Sbjct: 264 KEMLEGTD 271


>sp|GCH1_HYPBU|GTP cyclohydrolase 1|Hyperthermus butylicus (strain DSM 5456

Query: 3 KELLEGLD 10
+ELLEG D
Sbjct: 40 EELLEGYD 47


>sp|TRPA_METMP|TRYPTOPHAN synthase alpha chain|Methanococcus maripaludis (strain DSM 14266

Query: 3 KELLEGLD 10
KEL EG+D
Sbjct: 244 KELSEGID 251




34|Sequence|166|175|LEGLDYSVDV

>sp|IF2P_SULTO|PROBABLE translation initiation factor IF-2|Sulfurisphaera tokodaii (strain

Query: 1 LEGLDYSVDV 10
L+GL Y++DV
Sbjct: 248 LQGLGYTIDV 257


>sp|Y3524_METAC|PUTATIVE HTH-type transcriptional regulatory protein|Methanosarcina

Query: 2 EGLDYSVDV 10
EG+D S+DV
Sbjct: 163 EGMDASIDV 171


>sp|Y444_METMA|PUTATIVE HTH-type transcriptional regulatory protein|Methanosarcina mazei

Query: 2 EGLDYSVDV 10
EG+D S+DV
Sbjct: 163 EGMDASIDV 171


>sp|SYI_METMP|ISOLEUCINE--TRNA ligase|Methanococcus maripaludis (strain DSM 14266

Query: 1 LEGLDYSVD 9
LEG+D+S D
Sbjct: 981 LEGIDFSSD 989


>sp|GSA_METBF|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina barkeri (strain Fusaro /

Query: 2 EGLDYSV 8
EG+DYSV
Sbjct: 345 EGIDYSV 351


>sp|Y2318_METBF|PUTATIVE HTH-type transcriptional regulatory protein|Methanosarcina barkeri

Query: 2 EGLDYSVDV 10
EG+D S+DV
Sbjct: 163 EGMDASIDV 171


>sp|GSA_METAC|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 EGLDYSV 8
EGLDY+V
Sbjct: 345 EGLDYTV 351


>sp|SAND_THEX5|S-ADENOSYLMETHIONINE-DEPENDENT nucleotide dehydratase|Thermoplasmatales archaeon (strain ISO4-H5)

Query: 2 EGLDYSVDV 10
EGLD VDV
Sbjct: 256 EGLDREVDV 264


>sp|DHYS1_ARCFU|PROBABLE deoxyhypusine synthase 1|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 EGLDYSVDV 10
EG DY+V +
Sbjct: 238 EGFDYAVQI 246


>sp|RL22_HALSA|LARGE ribosomal subunit protein uL22|Halobacterium salinarum (strain

Query: 3 GLDYSVDV 10
G+ YSVDV
Sbjct: 2 GISYSVDV 9


>sp|RL22_NATPD|LARGE ribosomal subunit protein uL22|Natronomonas pharaonis (strain

Query: 3 GLDYSVDV 10
G+ YSVDV
Sbjct: 2 GISYSVDV 9


>sp|RS9_METMA|SMALL ribosomal subunit protein uS9|Methanosarcina mazei (strain ATCC

Query: 1 LEGLDYSVDV 10
+ GLD +VDV
Sbjct: 58 VSGLDINVDV 67


>sp|RS9_METAC|SMALL ribosomal subunit protein uS9|Methanosarcina acetivorans (strain

Query: 1 LEGLDYSVDV 10
+ GLD +VDV
Sbjct: 58 VSGLDINVDV 67


>sp|SYM_METBF|METHIONINE--TRNA ligase|Methanosarcina barkeri (strain Fusaro /

Query: 1 LEGLDYSV 8
L+G DYSV
Sbjct: 307 LKGADYSV 314


>sp|SYM_METMA|METHIONINE--TRNA ligase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 LEGLDYSV 8
L+G DYSV
Sbjct: 311 LKGADYSV 318


>sp|MPTD_PICTO|DIHYDRONEOPTERIN aldolase|Picrophilus torridus (strain ATCC 700027

Query: 2 EGLDYSV 8
EGLDY V
Sbjct: 107 EGLDYPV 113


>sp|SURE_THEKO|5'-NUCLEOTIDASE SurE|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 EGLDYSV 8
EG+D+SV
Sbjct: 138 EGIDFSV 144


>sp|GSA_PICTO|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Picrophilus torridus (strain ATCC 700027

Query: 1 LEGLDYS 7
L+G+DYS
Sbjct: 311 LQGMDYS 317


>sp|GSA_METMA|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 EGLDYSV 8
EGLDY V
Sbjct: 345 EGLDYHV 351


>sp|FLAB1_AERPE|PROBABLE flagellin 1|Aeropyrum pernix (strain ATCC 700893

Query: 2 EGLDYSVD 9
EG+D SVD
Sbjct: 85 EGVDMSVD 92


>sp|PDXS_HALSA|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Halobacterium salinarum (strain

Query: 1 LEGLDY 6
LEG+DY
Sbjct: 182 LEGMDY 187


>sp|PDXS_HALS3|PYRIDOXAL 5'-phosphate synthase subunit PdxS|Halobacterium salinarum (strain

Query: 1 LEGLDY 6
LEG+DY
Sbjct: 182 LEGMDY 187


>sp|HIS4_SACS2|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Saccharolobus solfataricus

Query: 1 LEGLDYSV 8
++G+DYSV
Sbjct: 174 VKGIDYSV 181


>sp|DAPAL_THEKO|UNCHARACTERIZED DapA-like lyase TK1237|Thermococcus kodakarensis (strain ATCC

Query: 5 DYSVDV 10
DYS+DV
Sbjct: 15 DYSIDV 20


>sp|IPYR_METAC|INORGANIC pyrophosphatase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 EGLDYSVDV 10
EGLD +VD+
Sbjct: 147 EGLDAAVDM 155


>sp|DHYS_METKA|PROBABLE deoxyhypusine synthase|Methanopyrus kandleri (strain AV19 /

Query: 3 GLDYSVDV 10
GLDY+V +
Sbjct: 235 GLDYAVQI 242


>sp|ACDD_METKA|ACETYL-COA decarbonylase/synthase complex subunit delta|Methanopyrus kandleri

Query: 3 GLDYSVDV 10
G++Y++DV
Sbjct: 294 GIEYTIDV 301


>sp|TMG10_METTH|TRNA (guanine(10)-N2)-dimethyltransferase|Methanothermobacter

Query: 2 EGLDYSV 8
EG+D+SV
Sbjct: 26 EGIDFSV 32


>sp|SYM_METAC|METHIONINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 LEGLDYSV 8
L G DYSV
Sbjct: 311 LNGADYSV 318


>sp|DAPAL_THEON|UNCHARACTERIZED DapA-like lyase TON_0506|Thermococcus onnurineus (strain NA1)

Query: 5 DYSVDV 10
DYS+DV
Sbjct: 15 DYSIDV 20




35|Sequence|171|180|YSVDVEENLT

>sp|PAN_METM6|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain C6 /

Query: 1 YSVDVEEN 8
YS DVE+N
Sbjct: 7 YSTDVEKN 14


>sp|IMDH_PYRFU|INOSINE-5'-MONOPHOSPHATE dehydrogenase|Pyrococcus furiosus (strain ATCC 43587

Query: 2 SVDVEENL 9
SVDVEE L
Sbjct: 166 SVDVEEAL 173


>sp|PAN_METM5|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain C5 /

Query: 1 YSVDVEEN 8
YS D+E+N
Sbjct: 7 YSTDIEKN 14


>sp|PAN_METMP|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain DSM 14266

Query: 1 YSVDVEEN 8
YS D+E+N
Sbjct: 7 YSTDIEKN 14


>sp|CBIA_THEVO|COBYRINATE a,c-diamide synthase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 YSVDVEENL 9
Y+VD EN+
Sbjct: 305 YAVDARENI 313


>sp|PAN_METM7|PROTEASOME-ACTIVATING nucleotidase|Methanococcus maripaludis (strain C7 /

Query: 1 YSVDVEEN 8
YS D+E+N
Sbjct: 7 YSTDIEKN 14




36|Sequence|176|185|EENLTARDME

>sp|ILVD_METKA|DIHYDROXY-ACID dehydratase|Methanopyrus kandleri (strain AV19 /

Query: 1 EENLTARDM 9
EE +TARD+
Sbjct: 240 EEGITARDV 248


>sp|FTRL_METTH|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase-like protein|Methanothermobacter

Query: 3 NLTARDME 10
+TARDME
Sbjct: 24 TITARDME 31


>sp|HMGCS_METST|HYDROXYMETHYLGLUTARYL-COA synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 NLTARDME 10
NLTA D+E
Sbjct: 102 NLTAADLE 109


>sp|FTRL_METTM|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase-like protein|Methanothermobacter marburgensis

Query: 4 LTARDME 10
+TARDME
Sbjct: 25 ITARDME 31


>sp|MSMJS_METJA|SMALL-CONDUCTANCE mechanosensitive channel MscMJ|Methanocaldococcus jannaschii

Query: 2 ENLTARD 8
ENLT RD
Sbjct: 241 ENLTVRD 247


>sp|PCKG_THEAC|PHOSPHOENOLPYRUVATE carboxykinase [GTP]|Thermoplasma acidophilum (strain ATCC 25905

Query: 3 NLTARDME 10
NLT +DME
Sbjct: 538 NLTKQDME 545


>sp|CDC6K_HALMA|ORC1-TYPE DNA replication protein 11|Haloarcula marismortui (strain ATCC

Query: 2 ENLTARDME 10
ENL RD E
Sbjct: 24 ENLVGRDTE 32




37|Sequence|181|190|ARDMESALRA

>sp|FTRL_METTM|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase-like protein|Methanothermobacter marburgensis

Query: 1 ARDMESALRA 10
ARDME+ RA
Sbjct: 27 ARDMETVRRA 36


>sp|FTRL_METTH|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase-like protein|Methanothermobacter

Query: 1 ARDMESALRA 10
ARDME+ RA
Sbjct: 27 ARDMETVRRA 36


>sp|HIS6_METBU|IMIDAZOLE glycerol phosphate synthase subunit|Methanococcoides burtonii

Query: 2 RDMESALRA 10
RD++ ALRA
Sbjct: 258 RDVKEALRA 266


>sp|PUS10_AERPE|TRNA pseudouridine synthase Pus10|Aeropyrum pernix (strain ATCC 700893

Query: 1 ARDMESALRA 10
+R +ESALRA
Sbjct: 3 SRVLESALRA 12


>sp|NADE_AERPE|NH(3)-DEPENDENT NAD(+) synthetase|Aeropyrum pernix (strain ATCC 700893

Query: 2 RDMESALR 9
RD+E ALR
Sbjct: 80 RDVEDALR 87


>sp|Y1005_METKA|PUTATIVE HTH-type transcriptional regulatory protein|Methanopyrus kandleri

Query: 3 DMESALRA 10
D+E ALRA
Sbjct: 8 DLEEALRA 15




38|Sequence|186|195|SALRAFATRP

>sp|DEOC_ACIB4|DEOXYRIBOSE-PHOSPHATE aldolase|Aciduliprofundum boonei (strain DSM 19572

Query: 3 LRAFATR 9
L+AFATR
Sbjct: 15 LKAFATR 21


>sp|CS3HD_THETK|CRISPR-ASSOCIATED endonuclease Cas3-HD|Thermoproteus tenax (strain ATCC 35583

Query: 1 SALRAFATRP 10
+ALR +A+RP
Sbjct: 149 AALREWASRP 158




39|Sequence|191|200|FATRPEHKSS

>sp|Y1852_ARCFU|UNCHARACTERIZED protein AF_1852|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 RPEHKS 9
RPEHKS
Sbjct: 125 RPEHKS 130


>sp|SYT_HALMA|THREONINE--TRNA ligase|Haloarcula marismortui (strain ATCC 43049

Query: 1 FATRPE 6
FATRPE
Sbjct: 419 FATRPE 424




40|Sequence|196|205|EHKSSDSTFL

>sp|PSB_ACIB4|PROTEASOME subunit beta|Aciduliprofundum boonei (strain DSM 19572

Query: 1 EHKSSDSTFL 10
EH++S TF+
Sbjct: 24 EHRASMETFI 33




41|Sequence|201|210|DSTFLVLMSH

>sp|HISX_SULTO|HISTIDINOL dehydrogenase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 2 STFLVLMSH 10
STFLVL+S+
Sbjct: 246 STFLVLLSN 254




42|Sequence|206|215|VLMSHGILEG

>sp|TRPB_PYRHO|TRYPTOPHAN synthase beta chain|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 VLMSHGILE 9
VLM+HGI++
Sbjct: 357 VLMNHGIVK 365


>sp|G1PDH_METMA|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 VLMSHGILE 9
VL+ HG+LE
Sbjct: 19 VLVGHGVLE 27


>sp|DADD_METTP|5'-DEOXYADENOSINE deaminase|Methanothrix thermoacetophila (strain DSM 6194

Query: 1 VLMSHGILEG 10
VLM G++EG
Sbjct: 385 VLMRDGVIEG 394


>sp|G1PDH_METAC|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanosarcina acetivorans (strain ATCC

Query: 1 VLMSHGILE 9
VL+ HG+LE
Sbjct: 19 VLVGHGVLE 27


>sp|G1PDH_METBF|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Methanosarcina barkeri (strain Fusaro /

Query: 1 VLMSHGILE 9
VL+ HG+LE
Sbjct: 19 VLVGHGVLE 27


>sp|BACR_HALAR|CRUXRHODOPSIN-1 argentinensis

Query: 1 VLMSHGILEG 10
+L SHG+L+G
Sbjct: 227 LLRSHGVLDG 236


>sp|BACR1_HALMA|BACTERIORHODOPSIN-I marismortui (strain ATCC 43049

Query: 1 VLMSHGILEG 10
+L SHG+L+G
Sbjct: 227 LLRSHGVLDG 236


>sp|ASSY_THEAC|ARGININOSUCCINATE synthase|Thermoplasma acidophilum (strain ATCC 25905

Query: 1 VLMSHGIL 8
+ MSHGI+
Sbjct: 334 IRMSHGIM 341


>sp|COBS_METTH|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Methanothermobacter thermautotrophicus

Query: 2 LMSHGILE 9
LMSHG E
Sbjct: 89 LMSHGSFE 96




43|Sequence|211|220|GILEGICGTV

>sp|IF2P_METTH|PROBABLE translation initiation factor IF-2|Methanothermobacter

Query: 2 ILEGICG 8
++EGICG
Sbjct: 51 VIEGICG 57


>sp|SLAA_METS5|S-LAYER protein A|Metallosphaera sedula (strain ATCC 51363

Query: 1 GILEGICGTV 10
GILEGI T+
Sbjct: 983 GILEGILSTI 992


>sp|COBQ_METMP|PROBABLE cobyric acid synthase|Methanococcus maripaludis (strain DSM 14266

Query: 1 GILEGICG 8
GI+ GICG
Sbjct: 324 GIVLGICG 331


>sp|COBQ_METM5|PROBABLE cobyric acid synthase|Methanococcus maripaludis (strain C5 /

Query: 1 GILEGICG 8
GI+ GICG
Sbjct: 324 GIVLGICG 331


>sp|DPOL_PYRSD|DNA polymerase|Pyrococcus sp. (strain GB-D)

Query: 2 ILEGICGTV 10
I E +CGT+
Sbjct: 838 IFESLCGTL 846


>sp|DPOL_THEHY|DNA polymerase|Thermococcus hydrothermalis

Query: 2 ILEGICGTV 10
I E +CGT+
Sbjct: 804 IFENLCGTL 812


>sp|COBQ_METM6|PROBABLE cobyric acid synthase|Methanococcus maripaludis (strain C6 /

Query: 1 GILEGICG 8
GI+ GICG
Sbjct: 324 GIVLGICG 331


>sp|COX1_HALSA|CYTOCHROME c oxidase polypeptide 1|Halobacterium salinarum (strain ATCC

Query: 1 GILEGICGTV 10
GIL G+ GT+
Sbjct: 72 GILYGVYGTI 81


>sp|RS10_CENSY|SMALL ribosomal subunit protein uS10|Cenarchaeum symbiosum (strain A)

Query: 3 LEGICGTV 10
L+G+CG +
Sbjct: 17 LDGVCGII 24


>sp|RS10_NITMS|SMALL ribosomal subunit protein uS10|Nitrosopumilus maritimus (strain

Query: 3 LEGICGTV 10
L+G+CG +
Sbjct: 17 LDGVCGEI 24


>sp|RLMH_METTP|PUTATIVE ribosomal RNA large subunit|Methanothrix thermoacetophila (strain

Query: 1 GILEGICGTV 10
GIL +CG V
Sbjct: 49 GILAHLCGGV 58


>sp|HIS8_METBF|HISTIDINOL-PHOSPHATE aminotransferase|Methanosarcina barkeri (strain Fusaro /

Query: 1 GILEGICGTV 10
G+L+G+C V
Sbjct: 101 GLLDGLCRLV 110


>sp|CBIA_SULTO|COBYRINATE a,c-diamide synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 GILEGICG 8
GI+EG+ G
Sbjct: 84 GIIEGVMG 91


>sp|CBIA_SULAC|COBYRINATE a,c-diamide synthase|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 GILEGICG 8
GI+EG+ G
Sbjct: 84 GIIEGVMG 91


>sp|CBIA_SACS2|COBYRINATE a,c-diamide synthase|Saccharolobus solfataricus (strain ATCC

Query: 1 GILEGICG 8
GI+EG+ G
Sbjct: 82 GIIEGVMG 89


>sp|HIS8_METMA|HISTIDINOL-PHOSPHATE aminotransferase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 GILEGIC 7
G+L+G+C
Sbjct: 103 GLLDGLC 109


>sp|HIS8_METAC|HISTIDINOL-PHOSPHATE aminotransferase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 GILEGIC 7
G+L+G+C
Sbjct: 102 GLLDGLC 108


>sp|HERA_PYRFU|DNA double-strand break repair helicase|Pyrococcus furiosus (strain

Query: 1 GILEGICGTV 10
GI+E + GTV
Sbjct: 174 GIVEDVGGTV 183


>sp|AATB_METBU|A-TYPE ATP synthase subunit B|Methanococcoides burtonii (strain DSM 6242

Query: 1 GILEGICGTV 10
G+++GI G+V
Sbjct: 288 GVIKGIKGSV 297


>sp|DPOL_THEG8|DNA polymerase|Thermococcus sp. (strain GE8)

Query: 2 ILEGICGTV 10
+ E +CGT+
Sbjct: 835 LFESLCGTL 843


>sp|APGM_METVS|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcus vannielii (strain ATCC

Query: 4 EGICG 8
EGICG
Sbjct: 37 EGICG 41


>sp|APGM_METM6|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcus maripaludis (strain C6 /

Query: 4 EGICG 8
EGICG
Sbjct: 37 EGICG 41


>sp|APGM_METMP|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcus maripaludis (strain DSM

Query: 4 EGICG 8
EGICG
Sbjct: 37 EGICG 41


>sp|APGM_META3|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Methanococcus aeolicus (strain ATCC

Query: 4 EGICG 8
EGICG
Sbjct: 37 EGICG 41


>sp|AATB_METMJ|A-TYPE ATP synthase subunit B|Methanoculleus marisnigri (strain ATCC 35101

Query: 1 GILEGICGTV 10
GI++G+ G+V
Sbjct: 287 GIIKGVKGSV 296


>sp|KDGA_PICTO|2-DEHYDRO-3-DEOXY-D-GLUCONATE/2-DEHYDRO-3-DEOXY-PHOSPHOGLUCONATE aldolase|Picrophilus torridus (strain ATCC 700027

Query: 5 GICGT 9
G+CGT
Sbjct: 192 GVCGT 196




44|Sequence|216|225|ICGTVHDEKK

>sp|SYFA_METM5|PHENYLALANINE--TRNA ligase alpha subunit|Methanococcus maripaludis (strain C5 /

Query: 2 CGTVHDEK 9
CGT+ DEK
Sbjct: 309 CGTIGDEK 316


>sp|CYAS_METLZ|CYSTEATE synthase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 ICGTVHDEKK 10
ICG V+D K
Sbjct: 312 ICGGVYDAMK 321


>sp|TRM1_METST|TRNA (guanine(26)-N(2))-dimethyltransferase|Methanosphaera stadtmanae

Query: 1 ICGTVHD 7
+CGT HD
Sbjct: 162 LCGTYHD 168


>sp|RUBR2_METJA|PROBABLE Rubredoxin-2|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ICGTVHDEKK 10
+CG V+DE K
Sbjct: 10 MCGWVYDEDK 19


>sp|RUBR_PYRAB|RUBREDOXIN abyssi (strain GE5 /

Query: 1 ICGTVHDEKK 10
ICG ++DE +
Sbjct: 8 ICGYIYDEDE 17


>sp|RUBR_PYRFU|RUBREDOXIN furiosus (strain ATCC 43587

Query: 1 ICGTVHDE 8
ICG ++DE
Sbjct: 8 ICGYIYDE 15


>sp|TRPF_METVS|N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase|Methanococcus vannielii (strain ATCC 35089

Query: 2 CGTVHDEK 9
CG VHD +
Sbjct: 138 CGMVHDHR 145


>sp|Y4342_METAC|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina acetivorans

Query: 2 CGTVHDE 8
C TVH+E
Sbjct: 93 CRTVHEE 99


>sp|IF2P_METST|PROBABLE translation initiation factor IF-2|Methanosphaera stadtmanae

Query: 1 ICGTVHDE 8
I GT+H+E
Sbjct: 168 IVGTLHEE 175


>sp|Y640_METJA|UNCHARACTERIZED protein MJ0640|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ICGTVHDEKK 10
ICG V EKK
Sbjct: 292 ICGEVIAEKK 301


>sp|Y988_METJA|UNCHARACTERIZED protein MJ0988|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 ICGTVHDEK 9
+CG V+D K
Sbjct: 152 LCGIVYDTK 160




45|Sequence|221|230|HDEKKPDVLL

>sp|DAPB_METMJ|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanoculleus marisnigri (strain ATCC 35101

Query: 2 DEKKPDVLL 10
+EKKPDVL+
Sbjct: 56 NEKKPDVLI 64


>sp|CBIA_METTH|COBYRINATE a,c-diamide synthase|Methanothermobacter thermautotrophicus (strain

Query: 1 HDEKKPDV 8
HDE+ PDV
Sbjct: 281 HDEELPDV 288


>sp|MNTP_METHJ|MANGANESE exporter MntP|Methanospirillum hungatei JF-1 (strain ATCC

Query: 1 HDEKKPDVL 9
H+E+ PDV
Sbjct: 94 HEEEAPDVF 102


>sp|DAPB_METB6|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanoregula boonei (strain DSM 21154

Query: 4 KKPDVLL 10
KKPDVL+
Sbjct: 58 KKPDVLI 64


>sp|DAPB_METJA|4-HYDROXY-TETRAHYDRODIPICOLINATE reductase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 EKKPDVLL 10
E KPDVL+
Sbjct: 70 ETKPDVLV 77


>sp|UREND_METTH|DNA uridine endonuclease|Methanothermobacter thermautotrophicus

Query: 3 EKKPDVL 9
E+KPD+L
Sbjct: 28 EEKPDIL 34


>sp|DPOL_THEFM|DNA polymerase|Thermococcus fumicolans

Query: 3 EKKPDVLL 10
EK PDVL+
Sbjct: 200 EKDPDVLI 207


>sp|DPOL_THEHY|DNA polymerase|Thermococcus hydrothermalis

Query: 3 EKKPDVLL 10
EK PDVL+
Sbjct: 167 EKDPDVLI 174


>sp|DPOL_THEG8|DNA polymerase|Thermococcus sp. (strain GE8)

Query: 3 EKKPDVLL 10
EK PDVL+
Sbjct: 200 EKDPDVLI 207


>sp|NADA_METMA|QUINOLINATE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 1 HDEKKPDVL 9
H E +PDVL
Sbjct: 197 HPECRPDVL 205


>sp|NADA1_METAC|QUINOLINATE synthase 1|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 HDEKKPDVL 9
H E +PDVL
Sbjct: 197 HPECRPDVL 205


>sp|CCA_METTH|CCA-ADDING enzyme|Methanothermobacter thermautotrophicus (strain ATCC 29096

Query: 2 DEKKPDVLL 10
DE++ DVLL
Sbjct: 151 DEQRDDVLL 159


>sp|RLME_METJA|RIBOSOMAL RNA large subunit methyltransferase|Methanocaldococcus jannaschii

Query: 1 HDEKKPDVLL 10
+DEKK DV++
Sbjct: 112 NDEKKVDVVI 121


>sp|DPOL1_METTH|DNA polymerase PolB subunit 1|Methanothermobacter thermautotrophicus

Query: 3 EKKPDVLL 10
+KKPD+L+
Sbjct: 236 DKKPDILV 243


>sp|Y980_PYRAB|UPF0282 protein PYRAB09800|Pyrococcus abyssi (strain GE5 /

Query: 3 EKKPDVLL 10
EK PD+L+
Sbjct: 199 EKNPDILI 206


>sp|RIBL_METST|FAD synthase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 3 EKKPDVL 9
EKKPD++
Sbjct: 81 EKKPDII 87


>sp|SYL_PYRNV|LEUCINE--TRNA ligase|Pyrobaculum neutrophilum (strain DSM 2338

Query: 2 DEKKPDV 8
D+K+PD+
Sbjct: 198 DDKEPDI 204


>sp|TRPB2_ARCFU|TRYPTOPHAN synthase beta chain 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 EKKPDVLL 10
++KPDVL+
Sbjct: 256 DEKPDVLI 263


>sp|Y1002_PYRHO|UPF0282 protein PH1002|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 EKKPDVLL 10
EK PD+L+
Sbjct: 199 EKNPDILI 206


>sp|RL11_AERPE|LARGE ribosomal subunit protein uL11|Aeropyrum pernix (strain ATCC

Query: 3 EKKPDVL 9
EKKPD+L
Sbjct: 47 EKKPDLL 53


>sp|DPOL_DESST|DNA polymerase|Desulfurococcus sp. (strain Tok)

Query: 3 EKKPDVLL 10
EK PDVL+
Sbjct: 200 EKDPDVLI 207


>sp|PYRG_PYRAE|CTP synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 3 EKKPDVL 9
EK PD+L
Sbjct: 332 EKNPDIL 338


>sp|DPOL_THEKO|DNA polymerase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 3 EKKPDVLL 10
EK PDVL+
Sbjct: 200 EKDPDVLI 207


>sp|DPOL_THEGO|DNA polymerase|Thermococcus gorgonarius

Query: 3 EKKPDVLL 10
EK PDVL+
Sbjct: 200 EKDPDVLI 207


>sp|SYL_PYRAR|LEUCINE--TRNA ligase|Pyrobaculum arsenaticum (strain DSM 13514

Query: 2 DEKKPDV 8
D+K+PD+
Sbjct: 198 DDKEPDI 204


>sp|DPOL_THEAG|DNA polymerase|Thermococcus aggregans

Query: 3 EKKPDVLL 10
EK PDVL+
Sbjct: 200 EKDPDVLI 207


>sp|DPOL_THES9|DNA polymerase|Thermococcus sp. (strain 9oN-7)

Query: 3 EKKPDVLL 10
EK PDVL+
Sbjct: 200 EKDPDVLI 207


>sp|Y1593_PYRAB|PROTEIN PYRAB15930|Pyrococcus abyssi (strain GE5 /

Query: 3 EKKPDVLL 10
++KPDVL+
Sbjct: 58 DRKPDVLV 65


>sp|DABA_HALMA|PROBABLE inorganic carbon transporter subunit|Haloarcula marismortui

Query: 3 EKKPDVLL 10
EK+P++LL
Sbjct: 87 EKEPEILL 94




46|Sequence|226|235|PDVLLYDTIF

>sp|NIFH_METVO|NITROGENASE iron protein|Methanococcus voltae

Query: 1 PDVLLYDTI 9
PDV++YD +
Sbjct: 117 PDVVIYDIL 125


>sp|NIFH_METJA|NITROGENASE iron protein|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PDVLLYDTI 9
PDV++YD +
Sbjct: 117 PDVVIYDIL 125


>sp|IF2P_METLZ|PROBABLE translation initiation factor IF-2|Methanocorpusculum labreanum

Query: 2 DVLLYDTI 9
DV+LYD I
Sbjct: 249 DVILYDGI 256


>sp|RL11_NATPD|LARGE ribosomal subunit protein uL11|Natronomonas pharaonis (strain ATCC

Query: 1 PDVLLYDT 8
PD+L YDT
Sbjct: 110 PDLLAYDT 117


>sp|DPH2_METJA|2-(3-AMINO-3-CARBOXYPROPYL)HISTIDINE synthase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 PDVLLYD 7
PD+L YD
Sbjct: 284 PDILFYD 290


>sp|KTHY_META3|PROBABLE thymidylate kinase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 PDVLLY 6
PDVL+Y
Sbjct: 114 PDVLIY 119


>sp|HYPA_METST|HYDROGENASE maturation factor HypA|Methanosphaera stadtmanae (strain ATCC

Query: 2 DVLLYDTIF 10
D+L DTIF
Sbjct: 49 DILREDTIF 57


>sp|Y462_METMA|PUTATIVE ABC transporter ATP-binding protein|Methanosarcina mazei (strain

Query: 3 VLLYDT 8
VLLYDT
Sbjct: 337 VLLYDT 342


>sp|IF2P_PYRIL|PROBABLE translation initiation factor IF-2|Pyrobaculum islandicum (strain

Query: 2 DVLLYDTIF 10
DV+LYD +
Sbjct: 252 DVILYDGVL 260


>sp|Y1316_METTH|UPF0215 protein MTH_1316|Methanothermobacter thermautotrophicus (strain

Query: 2 DVLLYDTIF 10
DVLL T+F
Sbjct: 35 DVLLVGTVF 43


>sp|SYA_IGNH4|ALANINE--TRNA ligase|Ignicoccus hospitalis (strain KIN4/I /

Query: 1 PDVLLYDTI 9
PD LLY+ +
Sbjct: 275 PDELLYELV 283




47|Sequence|231|240|YDTIFQIFNN

>sp|DAPF_METJA|DIAMINOPIMELATE epimerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 YDTIFQIFNN 10
YD F+IFN+
Sbjct: 59 YDVRFRIFNS 68


>sp|OFOA_SACSO|2-OXOACID:FERREDOXIN oxidoreductase subunit alpha|Saccharolobus solfataricus

Query: 2 DTIFQIFN 9
+TIFQ FN
Sbjct: 75 ETIFQHFN 82


>sp|THII_PYRAE|TRNA sulfurtransferase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 YDTIFQIFNN 10
YD I ++ NN
Sbjct: 360 YDAITEVVNN 369


>sp|GSA_THEVO|GLUTAMATE-1-SEMIALDEHYDE 2,1-aminomutase|Thermoplasma volcanium (strain ATCC 51530

Query: 1 YDTIFQIF 8
Y T+FQ+F
Sbjct: 346 YGTMFQVF 353


>sp|DAPF_META3|DIAMINOPIMELATE epimerase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 1 YDTIFQIFNN 10
YD F+IFN+
Sbjct: 61 YDIRFRIFNS 70


>sp|CBID_METTH|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanothermobacter thermautotrophicus

Query: 2 DTIFQIFNN 10
DT+ +IFN+
Sbjct: 289 DTVTRIFND 297


>sp|Y642_METMP|UPF0285 protein MMP0642|Methanococcus maripaludis (strain DSM 14266

Query: 2 DTIFQIFNN 10
DT F+I NN
Sbjct: 224 DTKFEIMNN 232


>sp|DPCKG_METVS|GTP-DEPENDENT dephospho-CoA kinase|Methanococcus vannielii (strain ATCC 35089

Query: 1 YDTIFQIFN 9
+ T+F+++N
Sbjct: 69 FKTVFEVYN 77




48|Sequence|236|245|QIFNNRNCLS

>sp|PURP_METTP|5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-monophosphate synthetase|Methanothrix thermoacetophila (strain

Query: 3 FNNRNCLS 10
F NR CL+
Sbjct: 112 FGNRRCLA 119




49|Sequence|241|250|RNCLSLKDKP

>sp|Y704_METJA|UNCHARACTERIZED protein MJ0704|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 RNCLSLKDKP 10
+NCL+ K+KP
Sbjct: 256 KNCLNRKNKP 265


>sp|AROD_METMA|3-DEHYDROQUINATE dehydratase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 NCLSLKDKP 10
N LSLKD P
Sbjct: 94 NLLSLKDGP 102


>sp|Y153_THEVO|UPF0284 protein TV0153|Thermoplasma volcanium (strain ATCC 51530

Query: 3 CLSLKDKP 10
CLS KD P
Sbjct: 63 CLSSKDPP 70


>sp|AROD_METBF|3-DEHYDROQUINATE dehydratase|Methanosarcina barkeri (strain Fusaro /

Query: 2 NCLSLKDKP 10
N +SLKD P
Sbjct: 94 NLISLKDGP 102


>sp|KAE1B_METTH|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 2 NCLSLKDKP 10
N LSL+ KP
Sbjct: 23 NVLSLRGKP 31


>sp|FTR_METBF|FORMYLMETHANOFURAN--TETRAHYDROMETHANOPTERIN formyltransferase|Methanosarcina barkeri (strain Fusaro /

Query: 1 RNCLSLKDK 9
R C S+KDK
Sbjct: 223 RFCPSIKDK 231


>sp|PYRI_HALSA|ASPARTATE carbamoyltransferase regulatory chain|Halobacterium salinarum

Query: 2 NCLSLKDKP 10
NC++ D+P
Sbjct: 114 NCITANDEP 122




50|Sequence|246|255|LKDKPKVIIV

>sp|HUTU_THEVO|PROBABLE urocanate hydratase|Thermoplasma volcanium (strain ATCC 51530

Query: 2 KDKPKVIIV 10
KD P+V+IV
Sbjct: 92 KDSPRVLIV 100


>sp|PURA_THEKO|ADENYLOSUCCINATE synthetase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 LKDKPKVI 8
LKD+P+VI
Sbjct: 25 LKDEPEVI 32


>sp|PURA_THEGJ|ADENYLOSUCCINATE synthetase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 LKDKPKVI 8
LKD+P+VI
Sbjct: 25 LKDEPEVI 32


>sp|PURA_THEON|ADENYLOSUCCINATE synthetase|Thermococcus onnurineus (strain NA1)

Query: 1 LKDKPKVI 8
LKD+P++I
Sbjct: 25 LKDEPQII 32


>sp|Y832_METJA|UNCHARACTERIZED protein MJ0832|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LKDKPKVI 8
LKDKP VI
Sbjct: 806 LKDKPAVI 813


>sp|WECB_METJA|UDP-N-ACETYLGLUCOSAMINE 2-epimerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LKDKPKVIIV 10
LK+KP V++V
Sbjct: 83 LKEKPDVVVV 92


>sp|GLYA_METS3|SERINE hydroxymethyltransferase|Methanobrevibacter smithii (strain ATCC

Query: 1 LKDKPKVII 9
L++KPK+++
Sbjct: 160 LEEKPKIVL 168


>sp|Y286_KORCO|UPF0282 protein Kcr_0286|Korarchaeum cryptofilum (strain OPF8)

Query: 1 LKDKPKVIIV 10
L+ KPKV++V
Sbjct: 186 LEKKPKVVMV 195


>sp|CBID_META3|COBALT-PRECORRIN-5B C(1)-methyltransferase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 KDKPKVIIV 10
KDKPK+ IV
Sbjct: 109 KDKPKIEIV 117


>sp|Y1574_METJA|UNCHARACTERIZED ATP-dependent helicase MJ1574|Methanocaldococcus jannaschii (strain

Query: 1 LKDKPKVIIV 10
LKDKP V+
Sbjct: 143 LKDKPNVLFT 152


>sp|GLYA_METPE|SERINE hydroxymethyltransferase|Methanosphaerula palustris (strain ATCC

Query: 2 KDKPKVII 9
K KPKVI+
Sbjct: 162 KVKPKVIV 169


>sp|SYS_NITMS|SERINE--TRNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 LKDKPKVI 8
LK+KP+VI
Sbjct: 7 LKEKPQVI 14


>sp|GLYA_THEAC|SERINE hydroxymethyltransferase|Thermoplasma acidophilum (strain ATCC

Query: 1 LKDKPKVII 9
+K+KPKV +
Sbjct: 158 IKEKPKVCL 166


>sp|TRM56_HYPBU|TRNA (cytidine(56)-2'-O)-methyltransferase|Hyperthermus butylicus

Query: 4 KPKVIIV 10
KPK+IIV
Sbjct: 113 KPKLIIV 119


>sp|Y303_PYRFU|UPF0284 protein PF0303|Pyrococcus furiosus (strain ATCC 43587

Query: 3 DKPKVI 8
DKPK+I
Sbjct: 44 DKPKII 49


>sp|RL13_NANEQ|LARGE ribosomal subunit protein uL13|Nanoarchaeum equitans (strain

Query: 1 LKDKPKV 7
LKDKPK+
Sbjct: 109 LKDKPKL 115


>sp|PUR2_THEKO|PHOSPHORIBOSYLAMINE--GLYCINE ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 2 KDKPKVI 8
KD+PK+I
Sbjct: 278 KDEPKII 284


>sp|NTPTH_STAMF|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Staphylothermus marinus (strain ATCC 43588

Query: 3 DKPKVIIV 10
DKPK++++
Sbjct: 128 DKPKILVI 135




51|Sequence|251|260|KVIIVQACRG

>sp|HIS4_METAC|1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] imidazole-4-carboxamide isomerase|Methanosarcina acetivorans

Query: 4 IVQACR 9
IVQACR
Sbjct: 71 IVQACR 76


>sp|SERA_ARCFU|D-3-PHOSPHOGLYCERATE dehydrogenase|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 VIIVQACRG 10
VI+V A RG
Sbjct: 223 VIVVNAARG 231




52|Sequence|256|265|QACRGANRGE

>sp|RL10_THEAC|LARGE ribosomal subunit protein uL10|Thermoplasma acidophilum (strain

Query: 1 QACRGANRGE 10
Q RG NRG+
Sbjct: 39 QDIRGKNRGK 48


>sp|Y799_METJA|UNCHARACTERIZED protein MJ0799|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 ACRGANRG 9
AC+ A+RG
Sbjct: 196 ACKDASRG 203


>sp|RS19_METB6|SMALL ribosomal subunit protein uS19|Methanoregula boonei (strain DSM

Query: 4 RGANRGE 10
RG NRGE
Sbjct: 50 RGLNRGE 56




53|Sequence|261|270|ANRGELWVRD

>sp|DNLI_METLZ|DNA ligase|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 ANRGELWVR 9
NRG+LW++
Sbjct: 403 GNRGKLWIK 411


>sp|PCCA_HALMT|PROPIONYL-COA carboxylase, biotin carboxylase and|Haloferax mediterranei

Query: 1 ANRGELWVR 9
ANRGE+ VR
Sbjct: 8 ANRGEIAVR 16


>sp|PYCA_METTH|PYRUVATE carboxylase subunit A|Methanothermobacter thermautotrophicus

Query: 1 ANRGELWVR 9
ANRGE+ +R
Sbjct: 8 ANRGEIAIR 16


>sp|PYCA_METJA|PYRUVATE carboxylase subunit A|Methanocaldococcus jannaschii (strain ATCC

Query: 1 ANRGELWVR 9
ANRGE+ +R
Sbjct: 8 ANRGEIAIR 16


>sp|RRP4_KORCO|EXOSOME complex component Rrp4|Korarchaeum cryptofilum (strain OPF8)

Query: 1 ANRGELWVR 9
AN G +WV+
Sbjct: 180 ANNGRIWVK 188


>sp|PYCA_ARCFU|PYRUVATE carboxylase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 ANRGELWVR 9
ANRGE+ VR
Sbjct: 8 ANRGEIAVR 16


>sp|GCS2_HALLT|GLUTAMATE--CYSTEINE ligase|Halorubrum lacusprofundi (strain ATCC 49239

Query: 1 ANRGELW 7
A+RGELW
Sbjct: 219 ADRGELW 225


>sp|STOPP_PYRHO|MEMBRANE-BOUND protease PH1510|Pyrococcus horikoshii (strain ATCC 700860

Query: 3 RGELW 7
RGELW
Sbjct: 399 RGELW 403


>sp|GATD_PYRFU|GLUTAMYL-TRNA(GLN) amidotransferase subunit D|Pyrococcus furiosus (strain ATCC 43587

Query: 2 NRGELWVRD 10
+ GE+WV D
Sbjct: 293 SEGEVWVDD 301


>sp|FTTA_METJA|TRANSCRIPTION termination factor FttA|Methanocaldococcus jannaschii (strain ATCC

Query: 3 RGELWVR 9
RG+ W+R
Sbjct: 175 RGDYWIR 181


>sp|Y415_METJA|UNCHARACTERIZED protein MJ0415|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 GELWVRD 10
G+LW+ D
Sbjct: 150 GDLWIND 156


>sp|LEUC2_METKA|3-ISOPROPYLMALATE dehydratase large subunit 2|Methanopyrus kandleri (strain AV19 /

Query: 4 GELWVR 9
GELW+R
Sbjct: 147 GELWIR 152


>sp|TRM1_SULTO|TRNA (guanine(26)-N(2))-dimethyltransferase|Sulfurisphaera tokodaii

Query: 4 GELWVRD 10
GELW R+
Sbjct: 277 GELWNRE 283


>sp|Y1464_METJA|UNCHARACTERIZED GTP-binding protein MJ1464|Methanocaldococcus jannaschii (strain

Query: 3 RGELWVR 9
+GE WVR
Sbjct: 146 KGEQWVR 152


>sp|GCS2_HALWD|GLUTAMATE--CYSTEINE ligase|Haloquadratum walsbyi (strain DSM 16790

Query: 2 NRGELW 7
+RGELW
Sbjct: 222 DRGELW 227


>sp|GCS2_HALVD|GLUTAMATE--CYSTEINE ligase|Haloferax volcanii (strain ATCC 29605

Query: 2 NRGELW 7
+RGELW
Sbjct: 220 DRGELW 225


>sp|GCS2_HALSA|GLUTAMATE--CYSTEINE ligase|Halobacterium salinarum (strain ATCC 700922

Query: 2 NRGELW 7
+RGELW
Sbjct: 220 DRGELW 225


>sp|GCS2_HALS3|GLUTAMATE--CYSTEINE ligase|Halobacterium salinarum (strain ATCC 29341

Query: 2 NRGELW 7
+RGELW
Sbjct: 220 DRGELW 225


>sp|DNLI_PYRHO|DNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 ANRGELWVR 9
NRG+ W++
Sbjct: 412 GNRGKKWLK 420


>sp|THYX_SULTO|FLAVIN-DEPENDENT thymidylate synthase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 5 ELWVRD 10
E+W+RD
Sbjct: 42 EVWIRD 47


>sp|GCS2_NATPD|GLUTAMATE--CYSTEINE ligase|Natronomonas pharaonis (strain ATCC 35678

Query: 2 NRGELW 7
+RGELW
Sbjct: 220 DRGELW 225


>sp|DNLI_PYRAB|DNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 ANRGELWVR 9
NRG+ W++
Sbjct: 412 GNRGKKWLK 420


>sp|GCS2_HALMA|GLUTAMATE--CYSTEINE ligase|Haloarcula marismortui (strain ATCC 43049

Query: 2 NRGELW 7
+RGELW
Sbjct: 221 DRGELW 226


>sp|TYW3_THESM|TRNA(PHE) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-

Query: 4 GELWVRD 10
GELWV +
Sbjct: 158 GELWVNE 164


>sp|DNLI_PYRFU|DNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 ANRGELWVR 9
NRG+ W++
Sbjct: 412 GNRGKKWLK 420


>sp|TRI_SACS2|TRICORN protease homolog|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 ANRGELWV 8
+GELW+
Sbjct: 223 GTKGELWI 230


>sp|MSMS_METAC|METHYL sulfide methyltransferase-associated sensor|Methanosarcina

Query: 1 ANRGELW 7
A++GE+W
Sbjct: 975 AHKGEIW 981


>sp|DNLI_THEON|DNA ligase|Thermococcus onnurineus (strain NA1)

Query: 1 ANRGELWVR 9
NRG+ W++
Sbjct: 415 GNRGKKWLK 423


>sp|DNLI_PYRAY|DNA ligase|Pyrococcus abyssi

Query: 1 ANRGELWVR 9
NRG+ W++
Sbjct: 412 GNRGKKWLK 420


>sp|DNLI_THEKO|DNA ligase|Thermococcus kodakarensis (strain ATCC BAA-918

Query: 1 ANRGELWVR 9
NRG+ W++
Sbjct: 412 GNRGKKWLK 420


>sp|DNLI_THEFM|DNA ligase|Thermococcus fumicolans

Query: 1 ANRGELWVR 9
NRG+ W++
Sbjct: 412 GNRGKKWLK 420


>sp|DNLI_METMJ|DNA ligase|Methanoculleus marisnigri (strain ATCC 35101

Query: 3 RGELWVR 9
RG LWV+
Sbjct: 405 RGRLWVK 411


>sp|NADM_PICTO|NICOTINAMIDE-NUCLEOTIDE adenylyltransferase|Picrophilus torridus (strain ATCC 700027

Query: 3 RGELWVRD 10
RGE W +D
Sbjct: 136 RGENWKKD 143




54|Sequence|266|275|LWVRDSPASL

>sp|AMASY_HALMA|APPARENT malate synthase|Haloarcula marismortui (strain ATCC 43049

Query: 1 LWVRDSPAS 9
+W R+SPA+
Sbjct: 87 VWHRESPAT 95


>sp|Y419_METJA|UNCHARACTERIZED protein MJ0419|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LWVRDSP 7
+WV+D P
Sbjct: 94 IWVKDVP 100


>sp|ACEB_HALVD|MALATE synthase|Haloferax volcanii (strain ATCC 29605

Query: 1 LWVRDSPAS 9
+W RDSP +
Sbjct: 86 VWHRDSPET 94


>sp|TRUB_PYRIL|PROBABLE tRNA pseudouridine synthase B|Pyrobaculum islandicum (strain DSM

Query: 1 LWVRDS 6
+WVRDS
Sbjct: 241 IWVRDS 246


>sp|TRUB_PYRAR|PROBABLE tRNA pseudouridine synthase B|Pyrobaculum arsenaticum (strain DSM

Query: 1 LWVRDS 6
+WVRDS
Sbjct: 241 IWVRDS 246


>sp|HBCAL_NITMS|4-HYDROXYBUTYRATE--COA ligase [ADP-forming]|Nitrosopumilus maritimus (strain SCM1)

Query: 2 WVRDSPASL 10
WV+ SP +
Sbjct: 452 WVKSSPGKI 460


>sp|SYN_PYRAB|ASPARAGINE--TRNA ligase|Pyrococcus abyssi (strain GE5 /

Query: 1 LWVRDS 6
LW+RDS
Sbjct: 37 LWIRDS 42


>sp|SYN_PYRFU|ASPARAGINE--TRNA ligase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 LWVRDS 6
LW+RDS
Sbjct: 37 LWIRDS 42


>sp|SYN_PYRHO|ASPARAGINE--TRNA ligase|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LWVRDS 6
LW+RDS
Sbjct: 37 LWIRDS 42


>sp|DTDA_METKA|D-AMINOACYL-TRNA deacylase|Methanopyrus kandleri (strain AV19 /

Query: 1 LWVRDSPAS 9
LW D PAS
Sbjct: 7 LWNPDDPAS 15


>sp|TRUB_PYRNV|PROBABLE tRNA pseudouridine synthase B|Pyrobaculum neutrophilum (strain DSM

Query: 1 LWVRDS 6
+WVRDS
Sbjct: 241 IWVRDS 246


>sp|TRUB_PYRAE|PROBABLE tRNA pseudouridine synthase B|Pyrobaculum aerophilum (strain ATCC

Query: 1 LWVRDS 6
+WVRDS
Sbjct: 241 IWVRDS 246


>sp|TREH2_SULAC|TREHALASE 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 1 LWVRDSPASL 10
+WVRDS ++
Sbjct: 251 VWVRDSSYAI 260


>sp|TRUB_PYRCJ|PROBABLE tRNA pseudouridine synthase B|Pyrobaculum calidifontis (strain DSM

Query: 1 LWVRDS 6
+WVRDS
Sbjct: 241 IWVRDS 246


>sp|TRUB_THEON|PROBABLE tRNA pseudouridine synthase B|Thermococcus onnurineus (strain NA1)

Query: 1 LWVRDSPAS 9
+W+RDS +
Sbjct: 253 VWIRDSAVA 261


>sp|PURL_PYRIL|PHOSPHORIBOSYLFORMYLGLYCINAMIDINE synthase subunit PurL|Pyrobaculum islandicum (strain DSM 4184

Query: 1 LWVRDSPAS 9
+W+R+ P S
Sbjct: 42 MWLRELPGS 50


>sp|TRUB_THEKO|PROBABLE tRNA pseudouridine synthase B|Thermococcus kodakarensis (strain

Query: 1 LWVRDSPAS 9
+W+RDS +
Sbjct: 253 VWIRDSAVA 261


>sp|TRUB_THEGJ|PROBABLE tRNA pseudouridine synthase B|Thermococcus gammatolerans (strain

Query: 1 LWVRDSPAS 9
+W+RDS +
Sbjct: 253 VWIRDSAVA 261


>sp|RS15_NITMS|SMALL ribosomal subunit protein uS15|Nitrosopumilus maritimus (strain

Query: 2 WVRDSPASL 10
W+ SPA +
Sbjct: 25 WITQSPAEI 33




55|Sequence|271|280|SPASLEVASS

***** No hits found ******


56|Sequence|276|285|EVASSQSSEN

***** No hits found ******


57|Sequence|281|290|QSSENLEEDA

>sp|ACDG1_METTE|ACETYL-COA decarbonylase/synthase complex subunit gamma|Methanosarcina

Query: 3 SENLEEDA 10
S+N+EEDA
Sbjct: 105 SDNMEEDA 112


>sp|Y604_ARCFU|UNCHARACTERIZED protein AF_0604|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 ENLEED 9
ENLEED
Sbjct: 85 ENLEED 90


>sp|HMGCS_THESM|HYDROXYMETHYLGLUTARYL-COA synthase|Thermococcus sibiricus (strain DSM 12597

Query: 1 QSSENLEEDA 10
+S NL+EDA
Sbjct: 44 KSVNNLDEDA 53




58|Sequence|286|295|LEEDAVYKTH

>sp|Y1127_METJA|UNCHARACTERIZED protein MJ1127|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 LEEDAVYKTH 10
L+E+ VYK H
Sbjct: 257 LDEEGVYKIH 266


>sp|TRPD_META3|ANTHRANILATE phosphoribosyltransferase|Methanococcus aeolicus (strain ATCC

Query: 2 EEDAVYKTH 10
EE+ +YK H
Sbjct: 233 EENKIYKIH 241


>sp|Y1143_METST|PUTATIVE HTH-type transcriptional regulatory protein|Methanosphaera

Query: 1 LEEDAVYKTH 10
LEED VY+ H
Sbjct: 88 LEEDIVYERH 97


>sp|HTPX_THEAC|PROTEASE HtpX homolog|Thermoplasma acidophilum (strain ATCC 25905

Query: 5 AVYKTH 10
AVY+TH
Sbjct: 68 AVYRTH 73


>sp|Y967_METTH|PUTATIVE HTH-type transcriptional regulatory protein|Methanothermobacter

Query: 1 LEEDAVYKTH 10
L+ED VY+ H
Sbjct: 87 LKEDVVYERH 96


>sp|MTAD2_ARCFU|5-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE deaminase 2|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 LEEDAVY 7
L+EDAVY
Sbjct: 89 LDEDAVY 95


>sp|DAPAL_PYRHO|UNCHARACTERIZED DapA-like lyase PH0847|Pyrococcus horikoshii (strain ATCC 700860

Query: 1 LEEDAVYK 8
L+EDA++K
Sbjct: 107 LKEDAIFK 114


>sp|DADD_METST|5'-DEOXYADENOSINE deaminase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 2 EEDAVY 7
EEDA+Y
Sbjct: 411 EEDAIY 416


>sp|APE2_SACS2|LEUCYL aminopeptidase|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 LEEDAVYKTH 10
LE+D+V TH
Sbjct: 329 LEKDSVSTTH 338


>sp|Y1470_METJA|UNCHARACTERIZED protein MJ1470|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 EDAVYKT 9
+DA+YKT
Sbjct: 485 DDAIYKT 491


>sp|ACDA2_METKA|PUTATIVE acetyl-CoA decarbonylase/synthase complex subunit|Methanopyrus

Query: 2 EEDAVY 7
EEDAVY
Sbjct: 308 EEDAVY 313


>sp|RFCS_METS3|REPLICATION factor C small subunit|Methanobrevibacter smithii (strain ATCC

Query: 1 LEEDAVYK 8
++EDAVY+
Sbjct: 211 VDEDAVYE 218




59|Sequence|291|300|VYKTHVEKDF

>sp|DNAG_METLZ|DNA primase DnaG|Methanocorpusculum labreanum (strain ATCC 43576

Query: 1 VYKTHVEKD 9
V K+H+EKD
Sbjct: 269 VLKSHIEKD 277


>sp|DHE3_THELN|GLUTAMATE dehydrogenase|Thermococcus litoralis (strain ATCC 51850

Query: 1 VYKTHVEKD 9
VY TH EK+
Sbjct: 384 VYNTHKEKN 392


>sp|FLPA_SACS2|FIBRILLARIN-LIKE rRNA/tRNA 2'-O-methyltransferase|Saccharolobus solfataricus (strain

Query: 1 VYKTHVEK 8
+YKT VEK
Sbjct: 195 IYKTEVEK 202


>sp|FPRA_METTM|COENZYME F420H(2) oxidase|Methanothermobacter marburgensis (strain ATCC

Query: 1 VYKTHVEKD 9
+ + HVEKD
Sbjct: 79 IIQNHVEKD 87


>sp|DPOL3_SACSH|DNA polymerase 3|Saccharolobus shibatae (strain ATCC 51178

Query: 5 HVEKDF 10
H+EKDF
Sbjct: 657 HIEKDF 662


>sp|Y1054_METJA|UNCHARACTERIZED protein MJ1054|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 YKTHVEKDF 10
YK ++KDF
Sbjct: 457 YKIKIDKDF 465


>sp|DHE3_THEPR|GLUTAMATE dehydrogenase|Thermococcus profundus

Query: 1 VYKTHVEKD 9
VY TH +K+
Sbjct: 384 VYNTHKDKN 392




60|Sequence|296|305|VEKDFIAFCS

>sp|Y1664_METJA|UNCHARACTERIZED protein MJ1664|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 VEKDFIAFCS 10
++KDF FCS
Sbjct: 86 IKKDFKDFCS 95


>sp|RL30_METLZ|LARGE ribosomal subunit protein uL30|Methanocorpusculum labreanum

Query: 3 KDFIAF 8
KDF+AF
Sbjct: 49 KDFVAF 54


>sp|RFCL_METLZ|REPLICATION factor C large subunit|Methanocorpusculum labreanum (strain ATCC

Query: 2 EKDFIAFC 9
EKD AFC
Sbjct: 372 EKDPAAFC 379


>sp|Y538_METJA|UNCHARACTERIZED protein MJ0538|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 KDFIAFC 9
KD+I FC
Sbjct: 67 KDYINFC 73




61|Sequence|301|310|IAFCSSTPHN

>sp|BIOB_META3|BIOTIN synthase|Methanococcus aeolicus (strain ATCC BAA-1280

Query: 2 AFCSSTPHN 10
AFCS + HN
Sbjct: 69 AFCSQSLHN 77


>sp|BIOB_METMP|BIOTIN synthase|Methanococcus maripaludis (strain DSM 14266

Query: 3 FCSSTPHN 10
FCS + HN
Sbjct: 73 FCSQSKHN 80


>sp|BIOB_METM7|BIOTIN synthase|Methanococcus maripaludis (strain C7 /

Query: 3 FCSSTPHN 10
FCS + HN
Sbjct: 73 FCSQSKHN 80


>sp|BIOB_METM6|BIOTIN synthase|Methanococcus maripaludis (strain C6 /

Query: 3 FCSSTPHN 10
FCS + HN
Sbjct: 73 FCSQSKHN 80


>sp|BIOB_METM5|BIOTIN synthase|Methanococcus maripaludis (strain C5 /

Query: 3 FCSSTPHN 10
FCS + HN
Sbjct: 73 FCSQSKHN 80


>sp|SYM_METST|METHIONINE--TRNA ligase|Methanosphaera stadtmanae (strain ATCC 43021

Query: 4 CSSTPH 9
C STPH
Sbjct: 176 CDSTPH 181


>sp|BIOB_METVS|BIOTIN synthase|Methanococcus vannielii (strain ATCC 35089

Query: 3 FCSSTPHN 10
FCS + HN
Sbjct: 73 FCSQSIHN 80


>sp|Y946_ARCFU|UNCHARACTERIZED protein AF_0946|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 IAFCSSTP 8
+AFCS P
Sbjct: 554 LAFCSGDP 561


>sp|Y550_METJA|UNCHARACTERIZED protein MJ0550|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 IAFCSSTPH 9
I+FC +T H
Sbjct: 246 ISFCPATVH 254


>sp|PYRC_HALSA|DIHYDROOROTASE salinarum (strain ATCC 700922

Query: 4 CSSTPHN 10
C +TPH+
Sbjct: 240 CEATPHH 246


>sp|Y189_METAR|UPF0313 protein UNCMA_01890|Methanocella arvoryzae (strain DSM 22066

Query: 2 AFCSSTPH 9
AFC+ T H
Sbjct: 304 AFCAITAH 311




62|Sequence|306|315|STPHNVSWRD

>sp|APGM_PYRAB|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrococcus abyssi (strain GE5 /

Query: 3 PHNVSWRD 10
PH SW D
Sbjct: 173 PHKFSWED 180


>sp|RL3_METLZ|LARGE ribosomal subunit protein uL3|Methanocorpusculum labreanum (strain

Query: 2 TPHNVSWR 9
TPH+V W+
Sbjct: 238 TPHHVRWQ 245


>sp|KHSE_AERPE|HOMOSERINE kinase|Aeropyrum pernix (strain ATCC 700893

Query: 3 PHNVSWRD 10
P NVS+RD
Sbjct: 196 PENVSFRD 203


>sp|RL3_METHJ|LARGE ribosomal subunit protein uL3|Methanospirillum hungatei JF-1

Query: 2 TPHNVSWR 9
TPH+V W+
Sbjct: 242 TPHHVRWQ 249


>sp|Y900_METJA|UNCHARACTERIZED protein MJ0900|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 PHNVSWRD 10
P N++W D
Sbjct: 204 PTNITWED 211


>sp|APGM_THEGJ|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Thermococcus gammatolerans (strain DSM

Query: 3 PHNVSWRD 10
PH +W D
Sbjct: 174 PHRFTWED 181


>sp|Y1470_METJA|UNCHARACTERIZED protein MJ1470|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 TPHNVSW 8
TPH V+W
Sbjct: 289 TPHTVAW 295


>sp|PUS10_METV3|TRNA pseudouridine synthase Pus10|Methanococcus voltae (strain ATCC

Query: 2 TPHNVSWR 9
TPH VS R
Sbjct: 435 TPHRVSHR 442


>sp|QOX2_SULAC|QUINOL oxidase subunit 2|Sulfolobus acidocaldarius (strain ATCC 33909

Query: 3 PHNVSWRD 10
P N +WRD
Sbjct: 142 PGNYTWRD 149


>sp|APGM_PYRFU|2,3-BISPHOSPHOGLYCERATE-INDEPENDENT phosphoglycerate mutase|Pyrococcus furiosus (strain ATCC 43587

Query: 3 PHNVSWRD 10
PH +W D
Sbjct: 174 PHPFTWED 181


>sp|Y1128_METJA|UNCHARACTERIZED protein MJ1128|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 TPHNVS 7
TPHNV+
Sbjct: 73 TPHNVN 78


>sp|SYS_METB6|SERINE--TRNA ligase|Methanoregula boonei (strain DSM 21154

Query: 2 TPHNVSWRD 10
TP ++W D
Sbjct: 23 TPEKIAWVD 31


>sp|RL3_METPE|LARGE ribosomal subunit protein uL3|Methanosphaerula palustris (strain

Query: 3 PHNVSWR 9
PH+V W+
Sbjct: 243 PHHVRWQ 249


>sp|G1PDH_METS5|GLYCEROL-1-PHOSPHATE dehydrogenase [NAD(P)+]|Metallosphaera sedula (strain ATCC 51363

Query: 4 HNVSWRD 10
H ++WR+
Sbjct: 282 HGINWRE 288


>sp|Y1546_PYRCJ|UPF0282 protein Pcal_1546|Pyrobaculum calidifontis (strain DSM 21063

Query: 2 TPHNVSW 8
+PH+++W
Sbjct: 108 SPHDLNW 114


>sp|Y1033_SACS2|KELCH domain-containing protein SSO1033|Saccharolobus solfataricus

Query: 3 PHNVSWR 9
P+N SWR
Sbjct: 174 PNNDSWR 180


>sp|RL3_METMJ|LARGE ribosomal subunit protein uL3|Methanoculleus marisnigri (strain

Query: 3 PHNVSWR 9
PH+V W+
Sbjct: 243 PHHVRWQ 249


>sp|RL3_METB6|LARGE ribosomal subunit protein uL3|Methanoregula boonei (strain DSM

Query: 3 PHNVSW 8
PH+V W
Sbjct: 243 PHHVRW 248




63|Sequence|311|320|VSWRDSTMGS

>sp|RFCS_THEPD|REPLICATION factor C small subunit|Thermofilum pendens (strain DSM 2475

Query: 2 SWRDSTM 8
SWRD+T+
Sbjct: 65 SWRDNTL 71


>sp|GADH_PICTO|D-GLYCERALDEHYDE dehydrogenase (NADP(+))|Picrophilus torridus (strain ATCC 700027

Query: 3 WRDSTMG 9
WRDS+ G
Sbjct: 9 WRDSSSG 15


>sp|Y1581_ARCFU|UNCHARACTERIZED protein AF_1581|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 VSWRDSTMGS 10
+ WRDS + S
Sbjct: 32 LGWRDSMLHS 41


>sp|SUDHA_PYRFU|SULFIDE dehydrogenase subunit alpha|Pyrococcus furiosus (strain ATCC

Query: 1 VSWRDSTM 8
+ WRD+T+
Sbjct: 86 IIWRDNTL 93


>sp|TRMY_METTP|TRNA (pseudouridine(54)-N(1))-methyltransferase|Methanothrix

Query: 2 SWRDSTMG 9
SWR+ST G
Sbjct: 97 SWRESTPG 104


>sp|RL3_METAC|LARGE ribosomal subunit protein uL3|Methanosarcina acetivorans (strain

Query: 1 VSWRDSTMG 9
VSWR MG
Sbjct: 246 VSWRVPQMG 254


>sp|RL3_METMA|LARGE ribosomal subunit protein uL3|Methanosarcina mazei (strain ATCC

Query: 1 VSWRDSTMG 9
VSWR MG
Sbjct: 246 VSWRVPQMG 254


>sp|KAE1B_NATPD|PROBABLE bifunctional tRNA threonylcarbamoyladenosine

Query: 1 VSWRD 5
VSWRD
Sbjct: 327 VSWRD 331


>sp|RL3_METBF|LARGE ribosomal subunit protein uL3|Methanosarcina barkeri (strain Fusaro

Query: 1 VSWRDSTMG 9
VSWR MG
Sbjct: 246 VSWRVPQMG 254




64|Sequence|316|325|STMGSIFITQ

***** No hits found ******


65|Sequence|321|330|IFITQLITCF

>sp|UDGA_SACS2|TYPE-4 uracil-DNA glycosylase|Saccharolobus solfataricus (strain ATCC

Query: 1 IFITQLITC 9
+FIT L+ C
Sbjct: 78 VFITNLVKC 86


>sp|UDGA_SULTO|TYPE-4 uracil-DNA glycosylase|Sulfurisphaera tokodaii (strain DSM 16993

Query: 1 IFITQLITC 9
+FIT ++ C
Sbjct: 78 VFITNVVKC 86


>sp|UDGA_PYRAE|TYPE-4 uracil-DNA glycosylase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 1 IFITQLITC 9
+FIT ++ C
Sbjct: 76 VFITNVVKC 84


>sp|CAS4_SACS2|CRISPR-ASSOCIATED exonuclease Cas4|Saccharolobus solfataricus (strain ATCC 35092

Query: 1 IFITQLITC 9
I++T L+ C
Sbjct: 24 IYVTDLVRC 32




66|Sequence|326|335|LITCFQKYSW

>sp|QUEE_PYRAE|7-CARBOXY-7-DEAZAGUANINE synthase|Pyrobaculum aerophilum (strain ATCC 51768

Query: 2 ITCFQKYSW 10
I C KYSW
Sbjct: 40 IYCDTKYSW 48


>sp|Y3537_METJA|UNCHARACTERIZED protein MJECL37|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 4 CFQKYSW 10
CFQKY +
Sbjct: 11 CFQKYGY 17


>sp|ASPD_METBF|L-ASPARTATE dehydrogenase|Methanosarcina barkeri (strain Fusaro /

Query: 1 LITCFQKYS 9
L TC ++YS
Sbjct: 43 LTTCLKRYS 51


>sp|PHR_METTM|DEOXYRIBODIPYRIMIDINE photo-lyase|Methanothermobacter marburgensis (strain ATCC BAA-927

Query: 2 ITCFQKY 8
+ CF+KY
Sbjct: 232 LACFEKY 238


>sp|DAPF_METJA|DIAMINOPIMELATE epimerase|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 2 ITCFQKYSW 10
I CF KY +
Sbjct: 80 IRCFSKYVY 88


>sp|DAPF_METTP|DIAMINOPIMELATE epimerase|Methanothrix thermoacetophila (strain DSM 6194

Query: 2 ITCFQKYSW 10
I C K++W
Sbjct: 81 IRCLAKHAW 89


>sp|SIHH_METMA|S-INOSYL-L-HOMOCYSTEINE hydrolase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 ITCFQKY 8
I CF KY
Sbjct: 90 INCFAKY 96


>sp|COBS_METBF|ADENOSYLCOBINAMIDE-GDP ribazoletransferase|Methanosarcina barkeri (strain Fusaro /

Query: 2 ITCFQKYSW 10
I CF + W
Sbjct: 205 IVCFLPFGW 213


>sp|PURA_METVS|ADENYLOSUCCINATE synthetase|Methanococcus vannielii (strain ATCC 35089

Query: 2 ITCFQKY 8
ITC KY
Sbjct: 282 ITCLDKY 288


>sp|PURA_METMP|ADENYLOSUCCINATE synthetase|Methanococcus maripaludis (strain DSM 14266

Query: 2 ITCFQKY 8
ITC KY
Sbjct: 282 ITCLDKY 288


>sp|PURA_METM7|ADENYLOSUCCINATE synthetase|Methanococcus maripaludis (strain C7 /

Query: 2 ITCFQKY 8
ITC KY
Sbjct: 282 ITCLDKY 288


>sp|PURA_METM6|ADENYLOSUCCINATE synthetase|Methanococcus maripaludis (strain C6 /

Query: 2 ITCFQKY 8
ITC KY
Sbjct: 282 ITCLDKY 288


>sp|PURA_METM5|ADENYLOSUCCINATE synthetase|Methanococcus maripaludis (strain C5 /

Query: 2 ITCFQKY 8
ITC KY
Sbjct: 282 ITCLDKY 288


>sp|Y085_ARCFU|UNCHARACTERIZED protein AF_0085|Archaeoglobus fulgidus (strain ATCC 49558

Query: 3 TCFQKYSW 10
TCF Y W
Sbjct: 103 TCFYSYHW 110


>sp|Y355_METJA|UNCHARACTERIZED protein MJ0355|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 3 TCFQKYSW 10
+CF+ YS+
Sbjct: 60 SCFENYSF 67




67|Sequence|331|340|QKYSWCCHLE

>sp|CAS10_METJA|CRISPR system single-strand-specific deoxyribonuclease

Query: 1 QKYSWC 6
QKY+WC
Sbjct: 187 QKYTWC 192


>sp|AGLE_HALVD|GLYCOSYLTRANSFERASE AglE|Haloferax volcanii (strain ATCC 29605

Query: 4 SWCCHL 9
+WCC L
Sbjct: 283 AWCCRL 288


>sp|QUEC_METBF|7-CYANO-7-DEAZAGUANINE synthase|Methanosarcina barkeri (strain Fusaro /

Query: 2 KYSWCCH 8
+YSW C+
Sbjct: 190 EYSWSCY 196


>sp|QUEC_METAC|7-CYANO-7-DEAZAGUANINE synthase|Methanosarcina acetivorans (strain ATCC 35395

Query: 2 KYSWCCH 8
+YSW C+
Sbjct: 190 EYSWSCY 196


>sp|QUEC_METMA|7-CYANO-7-DEAZAGUANINE synthase|Methanosarcina mazei (strain ATCC BAA-159

Query: 2 KYSWCCH 8
+YSW C+
Sbjct: 190 EYSWSCY 196


>sp|QUEC_METBU|7-CYANO-7-DEAZAGUANINE synthase|Methanococcoides burtonii (strain DSM 6242

Query: 2 KYSWCCH 8
+YSW C+
Sbjct: 189 EYSWSCY 195


>sp|TRET_THELN|TREHALOSE synthase|Thermococcus litoralis (strain ATCC 51850

Query: 1 QKYSWCCHLE 10
Q + W CH++
Sbjct: 146 QPWIWRCHID 155


>sp|TRET_PYRFU|TREHALOSE synthase|Pyrococcus furiosus (strain ATCC 43587

Query: 1 QKYSWCCHLE 10
Q + W CH++
Sbjct: 146 QPWIWRCHID 155


>sp|LACC_HALVD|LACCASE volcanii (strain ATCC 29605

Query: 2 KYSWCCHL 9
++ W CH+
Sbjct: 508 QFPWHCHM 515


>sp|Y043_METJA|UNCHARACTERIZED protein MJ0043|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 1 QKYSWCC 7
+KY+W C
Sbjct: 644 KKYNWKC 650


>sp|RL31_DESA1|LARGE ribosomal subunit protein eL31|Desulfurococcus amylolyticus

Query: 2 KYSWCCHLE 10
KY W C E
Sbjct: 57 KYIWSCGRE 65


>sp|Y1331_ARCFU|UNCHARACTERIZED protein AF_1331|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 KYSWC 6
KY WC
Sbjct: 294 KYYWC 298




68|Sequence|336|345|CCHLEEVFRK

>sp|GATE_METM6|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanococcus maripaludis (strain C6 /

Query: 3 HLEEVFR 9
HLEEVF+
Sbjct: 525 HLEEVFK 531


>sp|PELO_METKA|PROTEIN pelota homolog|Methanopyrus kandleri (strain AV19 /

Query: 3 HLEEVFRK 10
HLEEVF++
Sbjct: 257 HLEEVFKR 264


>sp|RRP4_METBF|EXOSOME complex component Rrp4|Methanosarcina barkeri (strain Fusaro /

Query: 3 HLEEVFRK 10
H EE++RK
Sbjct: 244 HSEEIYRK 251


>sp|RRP4_METAC|EXOSOME complex component Rrp4|Methanosarcina acetivorans (strain ATCC

Query: 3 HLEEVFRK 10
H EE++RK
Sbjct: 244 HSEEIYRK 251


>sp|TRKA1_METMZ|TRK system potassium uptake protein|Methanosarcina mazei

Query: 1 CCHLEEVFRK 10
CC + VFR+
Sbjct: 180 CCIVSAVFRE 189


>sp|TRKA1_METMA|TRK system potassium uptake protein|Methanosarcina mazei (strain ATCC

Query: 1 CCHLEEVFRK 10
CC + VFR+
Sbjct: 180 CCIVSAVFRE 189


>sp|SYH_KORCO|HISTIDINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 3 HLEEVF 8
HLEE+F
Sbjct: 244 HLEEIF 249


>sp|MSRA_METMP|PEPTIDE methionine sulfoxide reductase MsrA|Methanococcus maripaludis

Query: 5 EEVFRK 10
EEVFRK
Sbjct: 18 EEVFRK 23


>sp|GATE_METM7|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanococcus maripaludis (strain C7 /

Query: 3 HLEEVFR 9
HL+EVF+
Sbjct: 525 HLDEVFK 531


>sp|CCA_PYRFU|CCA-ADDING enzyme|Pyrococcus furiosus (strain ATCC 43587

Query: 4 LEEVFRK 10
LEE+F+K
Sbjct: 400 LEEIFKK 406


>sp|LEU1_PYRAB|2-ISOPROPYLMALATE synthase|Pyrococcus abyssi (strain GE5 /

Query: 3 HLEEVFRK 10
HLE F+K
Sbjct: 351 HLERAFKK 358


>sp|SYM_METTP|METHIONINE--TRNA ligase|Methanothrix thermoacetophila (strain DSM 6194

Query: 3 HLEEVFR 9
H E+VFR
Sbjct: 80 HFEDVFR 86


>sp|PYCA_ARCFU|PYRUVATE carboxylase subunit A|Archaeoglobus fulgidus (strain ATCC 49558

Query: 4 LEEVFRK 10
LEE FRK
Sbjct: 176 LEEAFRK 182


>sp|DMRX_METMA|DIHYDROMETHANOPTERIN reductase (acceptor)|Methanosarcina mazei (strain ATCC BAA-159

Query: 3 HLEEVFRK 10
+LEE+FR+
Sbjct: 65 YLEEIFRE 72


>sp|GATE_METJA|GLUTAMYL-TRNA(GLN) amidotransferase subunit E|Methanocaldococcus jannaschii (strain

Query: 3 HLEEVFR 9
HLEE F+
Sbjct: 526 HLEETFK 532


>sp|RUBH_METTH|PUTATIVE rubredoxin|Methanothermobacter thermautotrophicus (strain ATCC

Query: 1 CCHLEE 6
CC LEE
Sbjct: 125 CCSLEE 130




69|Sequence|341|350|EVFRKVQQSF

>sp|MTD_METKA|F420-DEPENDENT methylenetetrahydromethanopterin dehydrogenase|Methanopyrus

Query: 2 VFRKVQQSF 10
VFR VQ++F
Sbjct: 153 VFRVVQEAF 161


>sp|GUAA_PYRAE|GMP synthase [glutamine-hydrolyzing]|Pyrobaculum aerophilum (strain

Query: 2 VFRKVQQSF 10
+FRKV Q+F
Sbjct: 420 LFRKVWQAF 428


>sp|SYG_THEGJ|GLYCINE--TRNA ligase|Thermococcus gammatolerans (strain DSM 15229

Query: 1 EVFRKVQQS 9
E+FRK+Q++
Sbjct: 493 EIFRKLQKA 501




70|Sequence|346|355|VQQSFETPRA

>sp|RS4_METBF|SMALL ribosomal subunit protein uS4|Methanosarcina barkeri (strain

Query: 3 QSFETPR 9
+SFETPR
Sbjct: 9 KSFETPR 15


>sp|IF2B_STAMF|TRANSLATION initiation factor 2 subunit|Staphylothermus marinus (strain ATCC

Query: 2 QQSFETPRA 10
+++FE PRA
Sbjct: 28 KETFEVPRA 36


>sp|XDH2_HALVD|D-XYLOSE 1-dehydrogenase (NADP(+)) 2|Haloferax volcanii (strain ATCC 29605

Query: 1 VQQSFETP 8
V+ SF+TP
Sbjct: 222 VESSFDTP 229


>sp|SYC_METAC|CYSTEINE--TRNA ligase|Methanosarcina acetivorans (strain ATCC 35395

Query: 1 VQQSFETPRA 10
++ F TPRA
Sbjct: 363 LEDDFNTPRA 372


>sp|EF1A_CENSY|ELONGATION factor 1-alpha|Cenarchaeum symbiosum (strain A)

Query: 3 QSFETPR 9
Q FETP+
Sbjct: 82 QKFETPK 88




71|Sequence|351|360|ETPRAKAQMP

***** No hits found ******


72|Sequence|356|365|KAQMPTIERL

>sp|RS7_AERPE|SMALL ribosomal subunit protein uS7|Aeropyrum pernix (strain ATCC

Query: 1 KAQMPTIERL 10
KA++P +ERL
Sbjct: 64 KAEVPIVERL 73


>sp|RS7_METKA|SMALL ribosomal subunit protein uS7|Methanopyrus kandleri (strain AV19

Query: 1 KAQMPTIERL 10
KA++P +ERL
Sbjct: 56 KAEVPIVERL 65


>sp|TIAS_ACIS3|TRNA(ILE2) 2-agmatinylcytidine synthetase TiaS|Acidilobus saccharovorans

Query: 2 AQMPTIERL 10
A++PT++RL
Sbjct: 416 ARLPTMDRL 424




73|Sequence|361|370|TIERLSMTRY

***** No hits found ******


74|Sequence|366|377|SMTRYFYLFPGN

>sp|TMG10_PYRAB|TRNA (guanine(10)-N2)-dimethyltransferase|Pyrococcus abyssi (strain GE5

Query: 1 SMTRYFYL 8
S++RYFY+
Sbjct: 318 SLSRYFYI 325


>sp|SYS_KORCO|SERINE--TRNA ligase|Korarchaeum cryptofilum (strain OPF8)

Query: 3 TRYFYLF 9
+R+FYLF
Sbjct: 183 SRFFYLF 189


>sp|DOXD_ACIAM|THIOSULFATE dehydrogenase [quinone] large subunit|Acidianus ambivalens

Query: 2 MTRYFYLFP 10
MTR YLFP
Sbjct: 15 MTRMEYLFP 23


>sp|Y1865_ARCFU|UNCHARACTERIZED protein AF_1865|Archaeoglobus fulgidus (strain ATCC 49558

Query: 1 SMTRYFYLF 9
++++Y+YLF
Sbjct: 176 TISKYYYLF 184


>sp|Y2332_ARCFU|UNCHARACTERIZED protein AF_2332|Archaeoglobus fulgidus (strain ATCC 49558

Query: 2 MTRYFYLFPGN 12
M YF+ F GN
Sbjct: 1 MNLYFFTFTGN 11


>sp|TRM14_METJA|TRNA (guanine(6)-N2)-methyltransferase|Methanocaldococcus jannaschii

Query: 2 MTRYFYL 8
MTR FYL
Sbjct: 373 MTRVFYL 379


>sp|SYT_NITMS|THREONINE--TRNA ligase|Nitrosopumilus maritimus (strain SCM1)

Query: 1 SMTRYFYLFPG 11
SM YF FP
Sbjct: 265 SMVSYFNRFPA 275


>sp|Y1590_CALMQ|MEMO1 family protein Cmaq_1590|Caldivirga maquilingensis (strain ATCC

Query: 7 YLFPGN 12
YLFPG+
Sbjct: 148 YLFPGS 153


>sp|SYT_CENSY|THREONINE--TRNA ligase|Cenarchaeum symbiosum (strain A)

Query: 1 SMTRYFYLFPG 11
SM YF FP
Sbjct: 259 SMVSYFNRFPA 269


>sp|GGR2_METKA|DIGERANYLGERANYLGLYCEROPHOSPHOLIPID reductase 2|Methanopyrus kandleri (strain AV19 /

Query: 5 YFYLFP 10
YF++FP
Sbjct: 201 YFWIFP 206


>sp|Y486_METJA|UNCHARACTERIZED protein MJ0486|Methanocaldococcus jannaschii (strain ATCC 43067

Query: 5 YFYLFPG 11
Y Y +PG
Sbjct: 99 YIYFYPG 105


>sp|NTPTH_PYRAB|NUCLEOSIDE-TRIPHOSPHATASE THEP1|Pyrococcus abyssi (strain GE5 /

Query: 2 MTRYFYLFPGN 12
+ RY++L P N
Sbjct: 143 LGRYYWLTPEN 153


>sp|PYRF_THEAC|OROTIDINE 5'-phosphate decarboxylase|Thermoplasma acidophilum (strain ATCC

Query: 5 YFYLFPGN 12
Y Y+ PGN
Sbjct: 138 YGYIAPGN 145






THE END